kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def generate(self, args, *kwargs): """ Implementation for the generate method defined in ReportBase. Generates a html report and saves it. :param args: 1 argument, which is the filename :param kwargs: 3 keyword arguments with keys 'title', 'heads' and 'refresh' :return...	[ "def", "generate", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "title", "=", "kwargs", ".", "get", "(", "\"title\"", ")", "heads", "=", "kwargs", ".", "get", "(", "\"heads\"", ")", "refresh", "=", "kwargs", ".", "get", "(", ...	40	15.066667
def set_user_profile(self, displayname=None, avatar_url=None, reason="Changing room profile information"): """Set user profile within a room. This sets displayname and avatar_url for the logged in user only in a specific...	[ "def", "set_user_profile", "(", "self", ",", "displayname", "=", "None", ",", "avatar_url", "=", "None", ",", "reason", "=", "\"Changing room profile information\"", ")", ":", "member", "=", "self", ".", "client", ".", "api", ".", "get_membership", "(", "self"...	39.2	15.88
def _get_available_extensions(): """Get a list of available file extensions to make it easy for tab-completion and exception handling. """ extensions = [] # from filenames parsers_dir = os.path.join(os.path.dirname(__file__)) glob_filename = os.path.join(parsers_dir, "*" + _FILENAME_SUFFIX ...	[ "def", "_get_available_extensions", "(", ")", ":", "extensions", "=", "[", "]", "# from filenames", "parsers_dir", "=", "os", ".", "path", ".", "join", "(", "os", ".", "path", ".", "dirname", "(", "__file__", ")", ")", "glob_filename", "=", "os", ".", "p...	35.478261	14.652174
def _parse_args(): """ Parses the command line arguments. :return: Namespace with arguments. :rtype: Namespace """ parser = argparse.ArgumentParser(description='rain - a new sort of automated builder.') parser.add_argument('action', help='what shall we do?', default='build', nargs='?',...	[ "def", "_parse_args", "(", ")", ":", "parser", "=", "argparse", ".", "ArgumentParser", "(", "description", "=", "'rain - a new sort of automated builder.'", ")", "parser", ".", "add_argument", "(", "'action'", ",", "help", "=", "'what shall we do?'", ",", "default",...	40.230769	28.384615
def screenshots_done(self, jobid): """ Return true if the screenshots job is done """ resp = self.session.get(os.path.join(self.api_url, '{0}.json'.format(jobid))) resp = self._process_response(resp) return True if resp.json()['state'] == 'done' else False	[ "def", "screenshots_done", "(", "self", ",", "jobid", ")", ":", "resp", "=", "self", ".", "session", ".", "get", "(", "os", ".", "path", ".", "join", "(", "self", ".", "api_url", ",", "'{0}.json'", ".", "format", "(", "jobid", ")", ")", ")", "resp"...	42.571429	12.571429
def update_cov(self): """Recursively compute the covariance matrix for the multivariate normal proposal distribution. This method is called every self.interval once self.delay iterations have been performed. """ scaling = (2.4) ** 2 / self.dim # Gelman et al. 1996. ...	[ "def", "update_cov", "(", "self", ")", ":", "scaling", "=", "(", "2.4", ")", "**", "2", "/", "self", ".", "dim", "# Gelman et al. 1996.", "epsilon", "=", "1.0e-5", "chain", "=", "np", ".", "asarray", "(", "self", ".", "_trace", ")", "# Recursively comput...	41.454545	21.945455
def build_actions(self): """Create an ActionCollection that will perform sanity checks, copy the file, create a database entry and perform cleanup actions and in case of a failure clean everything up. :param work: the workfile :type work: :class:`JB_File` :param release: the rel...	[ "def", "build_actions", "(", "self", ")", ":", "checkau", "=", "ActionUnit", "(", "\"Sanity Checks\"", ",", "\"Check the workfile. If the file is not conform, ask the user to continue.\"", ",", "self", ".", "sanity_check", ")", "copyau", "=", "ActionUnit", "(", "\"Copy Fi...	56.06	19.58
def get_reversed_statuses(context): """Return a mapping of exit codes to status strings. Args: context (scriptworker.context.Context): the scriptworker context Returns: dict: the mapping of exit codes to status strings. """ _rev = {v: k for k, v in STATUSES.items()} _rev.updat...	[ "def", "get_reversed_statuses", "(", "context", ")", ":", "_rev", "=", "{", "v", ":", "k", "for", "k", ",", "v", "in", "STATUSES", ".", "items", "(", ")", "}", "_rev", ".", "update", "(", "dict", "(", "context", ".", "config", "[", "'reversed_statuse...	28.307692	21.769231
def case_insensitive_file_search(directory, pattern): """ Looks for file with pattern with case insensitive search """ try: return os.path.join( directory, [filename for filename in os.listdir(directory) if re.search(pattern, filename, re.IGNORECASE)][0]) ...	[ "def", "case_insensitive_file_search", "(", "directory", ",", "pattern", ")", ":", "try", ":", "return", "os", ".", "path", ".", "join", "(", "directory", ",", "[", "filename", "for", "filename", "in", "os", ".", "listdir", "(", "directory", ")", "if", "...	32.416667	15.75
def extract_uhs(dstore, what): """ Extracts uniform hazard spectra. Use it as /extract/uhs?kind=mean or /extract/uhs?kind=rlz-0, etc """ info = get_info(dstore) if what == '': # npz exports for QGIS sitecol = dstore['sitecol'] mesh = get_mesh(sitecol, complete=False) dic...	[ "def", "extract_uhs", "(", "dstore", ",", "what", ")", ":", "info", "=", "get_info", "(", "dstore", ")", "if", "what", "==", "''", ":", "# npz exports for QGIS", "sitecol", "=", "dstore", "[", "'sitecol'", "]", "mesh", "=", "get_mesh", "(", "sitecol", ",...	33.972222	13.305556
def add_method(self, pattern): """Decorator to add new dispatch functions.""" def wrap(f): def frozen_function(class_instance, f): def _(pattern, args, kwargs): return f(class_instance, pattern, args, **kwargs) return _ se...	[ "def", "add_method", "(", "self", ",", "pattern", ")", ":", "def", "wrap", "(", "f", ")", ":", "def", "frozen_function", "(", "class_instance", ",", "f", ")", ":", "def", "_", "(", "pattern", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "...	31.230769	22
def values(obj, glob, separator="/", afilter=None, dirs=True): """ Given an object and a path glob, return an array of all values which match the glob. The arguments to this function are identical to those of search(), and it is primarily a shorthand for a list comprehension over a yielded search ca...	[ "def", "values", "(", "obj", ",", "glob", ",", "separator", "=", "\"/\"", ",", "afilter", "=", "None", ",", "dirs", "=", "True", ")", ":", "return", "[", "x", "[", "1", "]", "for", "x", "in", "dpath", ".", "util", ".", "search", "(", "obj", ","...	55.375	29.625
def update(self, query_name, saved_query_attributes): """ Given a dict of attributes to be updated, update only those attributes in the Saved Query at the resource given by 'query_name'. This will perform two HTTP requests--one to fetch the query definition, and one to set the ne...	[ "def", "update", "(", "self", ",", "query_name", ",", "saved_query_attributes", ")", ":", "query_name_attr_name", "=", "\"query_name\"", "refresh_rate_attr_name", "=", "\"refresh_rate\"", "query_attr_name", "=", "\"query\"", "metadata_attr_name", "=", "\"metadata\"", "old...	43.617021	26.723404
def write_to_file(self, file_path='', date=(datetime.date.today()), organization='llnl'): """ Writes stargazers data to file. """ with open(file_path, 'w+') as out: out.write('date,organization,stargazers\n') sorted_stargazers = sorted(self.stargazers)#sor...	[ "def", "write_to_file", "(", "self", ",", "file_path", "=", "''", ",", "date", "=", "(", "datetime", ".", "date", ".", "today", "(", ")", ")", ",", "organization", "=", "'llnl'", ")", ":", "with", "open", "(", "file_path", ",", "'w+'", ")", "as", "...	42.454545	13.727273
def plot_subtract_from_data_all(self): """ subtract model components from data :return: """ f, axes = plt.subplots(2, 3, figsize=(16, 8)) self.subtract_from_data_plot(ax=axes[0, 0], text='Data') self.subtract_from_data_plot(ax=axes[0, 1], text='Data - Point Sour...	[ "def", "plot_subtract_from_data_all", "(", "self", ")", ":", "f", ",", "axes", "=", "plt", ".", "subplots", "(", "2", ",", "3", ",", "figsize", "=", "(", "16", ",", "8", ")", ")", "self", ".", "subtract_from_data_plot", "(", "ax", "=", "axes", "[", ...	53.842105	31.631579
def refresh_token( self, token_url, refresh_token=None, body="", auth=None, timeout=None, headers=None, verify=True, proxies=None, **kwargs ): """Fetch a new access token using a refresh token. :param token_url: The tok...	[ "def", "refresh_token", "(", "self", ",", "token_url", ",", "refresh_token", "=", "None", ",", "body", "=", "\"\"", ",", "auth", "=", "None", ",", "timeout", "=", "None", ",", "headers", "=", "None", ",", "verify", "=", "True", ",", "proxies", "=", "...	37.216216	22.797297
def add_item(self, item, replace = False): """ Add an item to the roster. This will not automatically update the roster on the server. :Parameters: - `item`: the item to add - `replace`: if `True` then existing item will be replaced, otherwise a `V...	[ "def", "add_item", "(", "self", ",", "item", ",", "replace", "=", "False", ")", ":", "if", "item", ".", "jid", "in", "self", ".", "_jids", ":", "if", "replace", ":", "self", ".", "remove_item", "(", "item", ".", "jid", ")", "else", ":", "raise", ...	32.545455	14.727273
def QA_fetch_user(user_cookie, db=DATABASE): """ get the user Arguments: user_cookie : str the unique cookie_id for a user Keyword Arguments: db: database for query Returns: list --- [ACCOUNT] """ collection = DATABASE.account return [res for res in collection...	[ "def", "QA_fetch_user", "(", "user_cookie", ",", "db", "=", "DATABASE", ")", ":", "collection", "=", "DATABASE", ".", "account", "return", "[", "res", "for", "res", "in", "collection", ".", "find", "(", "{", "'user_cookie'", ":", "user_cookie", "}", ",", ...	23.6	20.8
def auth_aliases(d): """Interpret user/password aliases. """ for alias, real in ((USER_KEY, "readonly_user"), (PASS_KEY, "readonly_password")): if alias in d: d[real] = d[alias] del d[alias]	[ "def", "auth_aliases", "(", "d", ")", ":", "for", "alias", ",", "real", "in", "(", "(", "USER_KEY", ",", "\"readonly_user\"", ")", ",", "(", "PASS_KEY", ",", "\"readonly_password\"", ")", ")", ":", "if", "alias", "in", "d", ":", "d", "[", "real", "]"...	31.375	11.625
def _next(self, state_class, *args): """Transition into the next state. :param type state_class: a subclass of :class:`State`. It is intialized with the communication object and :paramref:`args` :param args: additional arguments """ self._communication.state = state_cl...	[ "def", "_next", "(", "self", ",", "state_class", ",", "", "args", ")", ":", "self", ".", "_communication", ".", "state", "=", "state_class", "(", "self", ".", "_communication", ",", "", "args", ")" ]	43	17.375
def plotlyFrequencyHistogram(counts): """ x-axis is a count of how many times a bit was active y-axis is number of bits that have that frequency """ data = [ go.Histogram( x=tuple(count for _, _, count in counts.getNonZerosSorted()) ) ] py.plot(data, filename=os.environ.get("HEATMAP_NAME", ...	[ "def", "plotlyFrequencyHistogram", "(", "counts", ")", ":", "data", "=", "[", "go", ".", "Histogram", "(", "x", "=", "tuple", "(", "count", "for", "_", ",", "_", ",", "count", "in", "counts", ".", "getNonZerosSorted", "(", ")", ")", ")", "]", "py", ...	31.5	18.666667
def to_dict(self,include_node_id=False,no_attributes=False,track_namespaces=False): """ This function is currently geared very much towards writing STIX/CybOX objects to a dictionary. That should not be the case -- the function needs to be generic just as the from_dict function. ...	[ "def", "to_dict", "(", "self", ",", "include_node_id", "=", "False", ",", "no_attributes", "=", "False", ",", "track_namespaces", "=", "False", ")", ":", "flat_result", "=", "[", "]", "def", "make_ns_slug", "(", "name_counter", ",", "slug", "=", "'n'", ")"...	42.24031	25.031008
def labels(self, value): """ Setter for self.__labels attribute. :param value: Attribute value. :type value: tuple """ if value is not None: assert type(value) is tuple, "'{0}' attribute: '{1}' type is not 'tuple'!".format("labels", value) ass...	[ "def", "labels", "(", "self", ",", "value", ")", ":", "if", "value", "is", "not", "None", ":", "assert", "type", "(", "value", ")", "is", "tuple", ",", "\"'{0}' attribute: '{1}' type is not 'tuple'!\"", ".", "format", "(", "\"labels\"", ",", "value", ")", ...	45.785714	23.357143
def parse_srs(t_srs, src_ds_list=None): """Parse arbitrary input t_srs Parameters ---------- t_srs : str or gdal.Dataset or filename Arbitrary input t_srs src_ds_list : list of gdal.Dataset objects, optional Needed if specifying 'first' or 'last' Returns ------- t_srs ...	[ "def", "parse_srs", "(", "t_srs", ",", "src_ds_list", "=", "None", ")", ":", "if", "t_srs", "is", "None", "and", "src_ds_list", "is", "None", ":", "print", "(", "\"Input t_srs and src_ds_list are both None\"", ")", "else", ":", "if", "t_srs", "is", "None", "...	34.478261	13.804348
def describe(self, req=None, resp=None, **kwargs): """Describe API resource using resource introspection. Additional description on derrived resource class can be added using keyword arguments and calling ``super().decribe()`` method call like following: .. code-block:: python ...	[ "def", "describe", "(", "self", ",", "req", "=", "None", ",", "resp", "=", "None", ",", "", "", "kwargs", ")", ":", "description", "=", "{", "'params'", ":", "OrderedDict", "(", "[", "(", "name", ",", "param", ".", "describe", "(", ")", ")", "f...	36.020833	19.75
def from_ast( pyast_node, node=None, node_cls=None, Node=Node, iter_fields=ast.iter_fields, AST=ast.AST): '''Convert the ast tree to a tater tree. ''' node_cls = node_cls or Node node = node or node_cls() name = pyast_node.__class__.__name__ attrs = [] for field, value in it...	[ "def", "from_ast", "(", "pyast_node", ",", "node", "=", "None", ",", "node_cls", "=", "None", ",", "Node", "=", "Node", ",", "iter_fields", "=", "ast", ".", "iter_fields", ",", "AST", "=", "ast", ".", "AST", ")", ":", "node_cls", "=", "node_cls", "or...	36.1	11.366667
def is_build_needed(self, data_sink, data_src): """ returns true if data_src needs to be rebuilt, given that data_sink has had a rebuild requested. """ return (self._gettask(data_src).last_build_time == 0 or self._gettask(data_src).last_build_time < se...	[ "def", "is_build_needed", "(", "self", ",", "data_sink", ",", "data_src", ")", ":", "return", "(", "self", ".", "_gettask", "(", "data_src", ")", ".", "last_build_time", "==", "0", "or", "self", ".", "_gettask", "(", "data_src", ")", ".", "last_build_time"...	50.428571	9.142857
def inferSuperimposedSequenceObjects(exp, sequenceId, objectId, sequences, objects): """Run inference on the given sequence.""" # Create the (loc, feat) pairs for this sequence for column 0. objectSensations = { 0: [pair for pair in sequences[sequenceId]] } inferConfig = { "object": sequenceId, "...	[ "def", "inferSuperimposedSequenceObjects", "(", "exp", ",", "sequenceId", ",", "objectId", ",", "sequences", ",", "objects", ")", ":", "# Create the (loc, feat) pairs for this sequence for column 0.", "objectSensations", "=", "{", "0", ":", "[", "pair", "for", "pair", ...	33.684211	23.842105
def limit_keyphrases (path, phrase_limit=20): """ iterator for the most significant key phrases """ rank_thresh = None if isinstance(path, str): lex = [] for meta in json_iter(path): rl = RankedLexeme(**meta) lex.append(rl) else: lex = path ...	[ "def", "limit_keyphrases", "(", "path", ",", "phrase_limit", "=", "20", ")", ":", "rank_thresh", "=", "None", "if", "isinstance", "(", "path", ",", "str", ")", ":", "lex", "=", "[", "]", "for", "meta", "in", "json_iter", "(", "path", ")", ":", "rl", ...	21.689655	20.517241
def ajRadicaux(self, lemme): """ Calcule tous les radicaux du lemme l, * en se servant des modèles, ajoute à ce lemme, * et ensuite à la map * des radicaux de la classe Lemmat. Ligne type de lemme # ablŭo=ā̆blŭo\|lego\|ā̆blŭ\|ā̆blūt\|is, ere, lui, lutum # 0 ...	[ "def", "ajRadicaux", "(", "self", ",", "lemme", ")", ":", "m", "=", "self", ".", "lemmatiseur", ".", "modele", "(", "lemme", ".", "grModele", "(", ")", ")", "''' insérer d'abord les radicaux définis dans lemmes.la\n qui sont prioritaires '''", "for", "i", "in...	39.403846	14.903846
def get_node_type(tree): """ returns the node type (leaf or span) of a subtree (i.e. Nucleus or Satellite) Parameters ---------- tree : nltk.tree.ParentedTree a tree representing a rhetorical structure (or a part of it) """ node_type = tree[0].label() assert node_type in NODE_TY...	[ "def", "get_node_type", "(", "tree", ")", ":", "node_type", "=", "tree", "[", "0", "]", ".", "label", "(", ")", "assert", "node_type", "in", "NODE_TYPES", ",", "\"node_type: {}\"", ".", "format", "(", "node_type", ")", "return", "node_type" ]	30.666667	20.166667
def _filtered_walk(path, file_filter): """ static method that calls os.walk, but filters out anything that doesn't match the filter """ for root, dirs, files in os.walk(path): log.debug('looking in %s', root) log.debug('files is %s', files) file_filter.set_root(root) files = filter(file_filter, fi...	[ "def", "_filtered_walk", "(", "path", ",", "file_filter", ")", ":", "for", "root", ",", "dirs", ",", "files", "in", "os", ".", "walk", "(", "path", ")", ":", "log", ".", "debug", "(", "'looking in %s'", ",", "root", ")", "log", ".", "debug", "(", "...	32.166667	4.5
def create(self, mention, max_message_length): """ Create a message :param mention: JSON object containing mention details from Twitter (or an empty dict {}) :param max_message_length: Maximum allowable length for created message :return: A random message created using a Markov c...	[ "def", "create", "(", "self", ",", "mention", ",", "max_message_length", ")", ":", "message", "=", "[", "]", "def", "message_len", "(", ")", ":", "return", "sum", "(", "[", "len", "(", "w", ")", "+", "1", "for", "w", "in", "message", "]", ")", "w...	37.8125	23.0625
def qualify(workers, qualification, value, by_name, notify, sandbox): """Assign a qualification to 1 or more workers""" if not (workers and qualification and value): raise click.BadParameter( "Must specify a qualification ID, value/score, and at least one worker ID" ) mturk = _mt...	[ "def", "qualify", "(", "workers", ",", "qualification", ",", "value", ",", "by_name", ",", "notify", ",", "sandbox", ")", ":", "if", "not", "(", "workers", "and", "qualification", "and", "value", ")", ":", "raise", "click", ".", "BadParameter", "(", "\"M...	38.411765	25.676471
def decode_offset_response(cls, response): """ Decode OffsetResponse into OffsetResponsePayloads Arguments: response: OffsetResponse Returns: list of OffsetResponsePayloads """ return [ kafka.structs.OffsetResponsePayload(topic, partition, error,...	[ "def", "decode_offset_response", "(", "cls", ",", "response", ")", ":", "return", "[", "kafka", ".", "structs", ".", "OffsetResponsePayload", "(", "topic", ",", "partition", ",", "error", ",", "tuple", "(", "offsets", ")", ")", "for", "topic", ",", "partit...	31.571429	18.714286
def main(target, label): """ Semver tag triggered deployment helper """ check_environment(target, label) click.secho('Fetching tags from the upstream ...') handler = TagHandler(git.list_tags()) print_information(handler, label) tag = handler.yield_tag(target, label) confirm(tag)	[ "def", "main", "(", "target", ",", "label", ")", ":", "check_environment", "(", "target", ",", "label", ")", "click", ".", "secho", "(", "'Fetching tags from the upstream ...'", ")", "handler", "=", "TagHandler", "(", "git", ".", "list_tags", "(", ")", ")", ...	23.538462	14.307692
def get(self, id, options): '''Get a single item with the given ID''' if not self._item_path: raise AttributeError('get is not available for %s' % self._item_name) target = self._item_path % id json_data = self._redmine.get(target, options) data = self._redmine.un...	[ "def", "get", "(", "self", ",", "id", ",", "", "", "options", ")", ":", "if", "not", "self", ".", "_item_path", ":", "raise", "AttributeError", "(", "'get is not available for %s'", "%", "self", ".", "_item_name", ")", "target", "=", "self", ".", "_ite...	47.666667	13.444444
def getxattr(self, req, ino, name, size): """ Set an extended attribute Valid replies: reply_buf reply_data reply_xattr reply_err """ self.reply_err(req, errno.ENOSYS)	[ "def", "getxattr", "(", "self", ",", "req", ",", "ino", ",", "name", ",", "size", ")", ":", "self", ".", "reply_err", "(", "req", ",", "errno", ".", "ENOSYS", ")" ]	22.7	14.5
def convert_mrf_to_syntax_mrf( mrf_lines, conversion_rules ): ''' Converts given lines from Filosoft's mrf format to syntactic analyzer's format, using the morph-category conversion rules from conversion_rules, and punctuation via method _convert_punctuation(); As a result of conversion, th...	[ "def", "convert_mrf_to_syntax_mrf", "(", "mrf_lines", ",", "conversion_rules", ")", ":", "i", "=", "0", "while", "(", "i", "<", "len", "(", "mrf_lines", ")", ")", ":", "line", "=", "mrf_lines", "[", "i", "]", "if", "line", ".", "startswith", "(", "' '...	48.140625	18.109375
async def fetch_state(self, request): """Fetches data from a specific address in the validator's state tree. Request: query: - head: The id of the block to use as the head of the chain - address: The 70 character address of the data to be fetched Res...	[ "async", "def", "fetch_state", "(", "self", ",", "request", ")", ":", "error_traps", "=", "[", "error_handlers", ".", "InvalidAddressTrap", ",", "error_handlers", ".", "StateNotFoundTrap", "]", "address", "=", "request", ".", "match_info", ".", "get", "(", "'a...	38.8125	19.46875
def toggle_settings( toolbar=False, nbname=False, hideprompt=False, kernellogo=False): """Toggle main notebook toolbar (e.g., buttons), filename, and kernel logo.""" toggle = '' if toolbar: toggle += 'div#maintoolbar {margin-left: 8px !important;}\n' toggle += '.toolbar.containe...	[ "def", "toggle_settings", "(", "toolbar", "=", "False", ",", "nbname", "=", "False", ",", "hideprompt", "=", "False", ",", "kernellogo", "=", "False", ")", ":", "toggle", "=", "''", "if", "toolbar", ":", "toggle", "+=", "'div#maintoolbar {margin-left: 8px !imp...	48.166667	28.083333
def send_up(self, count): """ Sends the given number of up key presses. """ for i in range(count): self.interface.send_key(Key.UP)	[ "def", "send_up", "(", "self", ",", "count", ")", ":", "for", "i", "in", "range", "(", "count", ")", ":", "self", ".", "interface", ".", "send_key", "(", "Key", ".", "UP", ")" ]	29.5	6.166667
def trackerItem( self ): """ Returns the tracker item for this chart. :return <XChartTrackerItem> \|\| None """ # check for the tracking enabled state if not self.isTrackingEnabled(): return None # generate a new tracker i...	[ "def", "trackerItem", "(", "self", ")", ":", "# check for the tracking enabled state\r", "if", "not", "self", ".", "isTrackingEnabled", "(", ")", ":", "return", "None", "# generate a new tracker item\r", "if", "not", "(", "self", ".", "_trackerItem", "and", "self", ...	31.588235	11.588235
def info(): """Display app info. Examples: $ dj info No application, try running dj init. $ dj info Application: foo @ 2.7.9 Requirements: Django == 1.10 """ application = get_current_application() info = application.info() stdout.write(info) return info	[ "def", "info", "(", ")", ":", "application", "=", "get_current_application", "(", ")", "info", "=", "application", ".", "info", "(", ")", "stdout", ".", "write", "(", "info", ")", "return", "info" ]	15.789474	21.947368
def _compute_fans(shape): """Computes the number of input and output units for a weight shape. Args: shape: Integer shape tuple or TF tensor shape. Returns: A tuple of scalars (fan_in, fan_out). """ if len(shape) < 1: # Just to avoid errors for constants. fan_in = fan_out = 1 elif len(shape) ...	[ "def", "_compute_fans", "(", "shape", ")", ":", "if", "len", "(", "shape", ")", "<", "1", ":", "# Just to avoid errors for constants.", "fan_in", "=", "fan_out", "=", "1", "elif", "len", "(", "shape", ")", "==", "1", ":", "fan_in", "=", "fan_out", "=", ...	29.241379	14.655172
def _format_stage_info(bar_width, stage_info, duration, timedelta_formatter=_pretty_time_delta): """Formats the Spark stage progress. Parameters ---------- bar_width : int Width of the progressbar to print out. stage_info : :class:`pyspark.status.StageInfo` Information about the run...	[ "def", "_format_stage_info", "(", "bar_width", ",", "stage_info", ",", "duration", ",", "timedelta_formatter", "=", "_pretty_time_delta", ")", ":", "dur", "=", "timedelta_formatter", "(", "duration", ")", "percent", "=", "(", "stage_info", ".", "numCompletedTasks", ...	31.911765	17.941176
def get_pub_date(self, undefined=""): """ Args: undefined (optional): Argument, which will be returned if the `pub_date` record is not found. Returns: str: Date of publication (month and year usually) or `undefined` \ if `pub_date` ...	[ "def", "get_pub_date", "(", "self", ",", "undefined", "=", "\"\"", ")", ":", "dates", "=", "self", "[", "\"260c \"", "]", "+", "self", "[", "\"264c\"", "]", "def", "clean_date", "(", "date", ")", ":", "\"\"\"\n Clean the `date` strings from special c...	27.333333	18.428571
def ntp_server_key(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") ntp = ET.SubElement(config, "ntp", xmlns="urn:brocade.com:mgmt:brocade-ntp") server = ET.SubElement(ntp, "server") ip_key = ET.SubElement(server, "ip") ip_key.text = kwarg...	[ "def", "ntp_server_key", "(", "self", ",", "", "", "kwargs", ")", ":", "config", "=", "ET", ".", "Element", "(", "\"config\"", ")", "ntp", "=", "ET", ".", "SubElement", "(", "config", ",", "\"ntp\"", ",", "xmlns", "=", "\"urn:brocade.com:mgmt:brocade-ntp...	39.466667	10.466667
def get_storage_pool_by_name(self, name): """ Get ScaleIO StoragePool object by its name :param name: Name of StoragePool :return: ScaleIO StoragePool object :raise KeyError: No StoragePool with specified name found :rtype: StoragePool object """ for stora...	[ "def", "get_storage_pool_by_name", "(", "self", ",", "name", ")", ":", "for", "storage_pool", "in", "self", ".", "conn", ".", "storage_pools", ":", "if", "storage_pool", ".", "name", "==", "name", ":", "return", "storage_pool", "raise", "KeyError", "(", "\"S...	40.333333	7
def MakeDynamicPotentialFunc(kBT_Gamma, density, SpringPotnlFunc): """ Creates the function that calculates the potential given the position (in volts) and the radius of the particle. Parameters ---------- kBT_Gamma : float Value of kB*T/Gamma density : float density of the...	[ "def", "MakeDynamicPotentialFunc", "(", "kBT_Gamma", ",", "density", ",", "SpringPotnlFunc", ")", ":", "def", "PotentialFunc", "(", "xdata", ",", "Radius", ")", ":", "\"\"\"\n calculates the potential given the position (in volts) \n and the radius of the particle.\...	27.466667	17.733333
def get_groups_count(self, field=None): ''' Returns 'matches' from group response. If grouping on more than one field, provide the field argument to specify which count you are looking for. ''' field = field if field else self._determine_group_field(field) if 'ma...	[ "def", "get_groups_count", "(", "self", ",", "field", "=", "None", ")", ":", "field", "=", "field", "if", "field", "else", "self", ".", "_determine_group_field", "(", "field", ")", "if", "'matches'", "in", "self", ".", "data", "[", "'grouped'", "]", "[",...	47.1	26.9
def as_dict( self, key="id" ): """ Return a dictionary containing all remaining motifs, using `key` as the dictionary key. """ rval = {} for motif in self: rval[ getattr( motif, key ) ] = motif return rval	[ "def", "as_dict", "(", "self", ",", "key", "=", "\"id\"", ")", ":", "rval", "=", "{", "}", "for", "motif", "in", "self", ":", "rval", "[", "getattr", "(", "motif", ",", "key", ")", "]", "=", "motif", "return", "rval" ]	29.444444	13.222222
def strip_fhss(self, idx): """strip (2 byte) radiotap.fhss.hopset(1 byte) and radiotap.fhss.pattern(1 byte) :idx: int :return: int idx :return: collections.namedtuple """ fhss = collections.namedtuple('fhss', ['hopset', 'pattern']) fhss.hopset,...	[ "def", "strip_fhss", "(", "self", ",", "idx", ")", ":", "fhss", "=", "collections", ".", "namedtuple", "(", "'fhss'", ",", "[", "'hopset'", ",", "'pattern'", "]", ")", "fhss", ".", "hopset", ",", "fhss", ".", "pattern", ",", "=", "struct", ".", "unpa...	36.181818	15
def sameAs(self, other): """ Check if this is the same location. :: >>> l = Location(pop=5, snap=100) >>> m = Location(pop=5.0, snap=100.0) >>> l.sameAs(m) 0 >>> l = Location(pop=5, snap=100) >>> m = Location(pop=5....	[ "def", "sameAs", "(", "self", ",", "other", ")", ":", "if", "not", "hasattr", "(", "other", ",", "\"get\"", ")", ":", "return", "-", "1", "d", "=", "self", ".", "distance", "(", "other", ")", "if", "d", "<", "_EPSILON", ":", "return", "0", "retur...	26.5	14
def run_step(context): """Parse input file and substitutes {tokens} from context. Args: context: pypyr.context.Context. Mandatory. The following context keys expected: - fileFormat - in. mandatory. str, path-like, or an iterable...	[ "def", "run_step", "(", "context", ")", ":", "logger", ".", "debug", "(", "\"started\"", ")", "deprecated", "(", "context", ")", "StreamRewriterStep", "(", "__name__", ",", "'fileFormat'", ",", "context", ")", ".", "run_step", "(", ")", "logger", ".", "deb...	40.421053	24.605263
def update(self, table, columns, values): """Update one or more existing table rows. :type table: str :param table: Name of the table to be modified. :type columns: list of str :param columns: Name of the table columns to be modified. :type values: list of lists ...	[ "def", "update", "(", "self", ",", "table", ",", "columns", ",", "values", ")", ":", "self", ".", "_mutations", ".", "append", "(", "Mutation", "(", "update", "=", "_make_write_pb", "(", "table", ",", "columns", ",", "values", ")", ")", ")" ]	34.384615	18.461538
def create_virtualenv(venv=VENV, install_pip=False): """Creates the virtual environment and installs PIP only into the virtual environment """ print 'Creating venv...', install = ['virtualenv', '-q', venv] run_command(install) print 'done.' print 'Installing pip in virtualenv...', ...	[ "def", "create_virtualenv", "(", "venv", "=", "VENV", ",", "install_pip", "=", "False", ")", ":", "print", "'Creating venv...'", ",", "install", "=", "[", "'virtualenv'", ",", "'-q'", ",", "venv", "]", "run_command", "(", "install", ")", "print", "'done.'", ...	30.625	14.5
def pf_to_n(L, pf, R): """Returns the number of non-intersecting spheres required to achieve as close to a given packing fraction as possible, along with the actual achieved packing fraction. for a number of non-intersecting spheres. Parameters ---------- L: float array, shape (d,) Syst...	[ "def", "pf_to_n", "(", "L", ",", "pf", ",", "R", ")", ":", "dim", "=", "L", ".", "shape", "[", "0", "]", "n", "=", "int", "(", "round", "(", "pf", "*", "np", ".", "product", "(", "L", ")", "/", "sphere_volume", "(", "R", ",", "dim", ")", ...	31.192308	22.346154
def div_img(img1, div2): """ Pixelwise division or divide by a number """ if is_img(div2): return img1.get_data()/div2.get_data() elif isinstance(div2, (float, int)): return img1.get_data()/div2 else: raise NotImplementedError('Cannot divide {}({}) by ' ...	[ "def", "div_img", "(", "img1", ",", "div2", ")", ":", "if", "is_img", "(", "div2", ")", ":", "return", "img1", ".", "get_data", "(", ")", "/", "div2", ".", "get_data", "(", ")", "elif", "isinstance", "(", "div2", ",", "(", "float", ",", "int", ")...	43.25	14.25
def listed(self): """Print blacklist packages """ print("\nPackages in the blacklist:\n") for black in self.get_black(): if black: print("{0}{1}{2}".format(self.meta.color["GREEN"], black, self.meta.color["ENDC"])) ...	[ "def", "listed", "(", "self", ")", ":", "print", "(", "\"\\nPackages in the blacklist:\\n\"", ")", "for", "black", "in", "self", ".", "get_black", "(", ")", ":", "if", "black", ":", "print", "(", "\"{0}{1}{2}\"", ".", "format", "(", "self", ".", "meta", ...	34.727273	14.181818
def main(argv): """Train on examples and export the updated model weights.""" tf_records = argv[1:] logging.info("Training on %s records: %s to %s", len(tf_records), tf_records[0], tf_records[-1]) with utils.logged_timer("Training"): train(*tf_records) if FLAGS.export_path: ...	[ "def", "main", "(", "argv", ")", ":", "tf_records", "=", "argv", "[", "1", ":", "]", "logging", ".", "info", "(", "\"Training on %s records: %s to %s\"", ",", "len", "(", "tf_records", ")", ",", "tf_records", "[", "0", "]", ",", "tf_records", "[", "-", ...	37.571429	14.5
def normalise_reads(self): """ Use bbnorm from the bbmap suite of tools to perform read normalisation """ logging.info('Normalising reads to a kmer depth of 100') for sample in self.metadata: # Set the name of the normalised read files sample.general.norma...	[ "def", "normalise_reads", "(", "self", ")", ":", "logging", ".", "info", "(", "'Normalising reads to a kmer depth of 100'", ")", "for", "sample", "in", "self", ".", "metadata", ":", "# Set the name of the normalised read files", "sample", ".", "general", ".", "normali...	59.238095	27.142857
def _inherited_value(self, attr_name): """ Return the attribute value, e.g. 'width' of the base placeholder this placeholder inherits from. """ base_placeholder = self._base_placeholder if base_placeholder is None: return None inherited_value = getattr...	[ "def", "_inherited_value", "(", "self", ",", "attr_name", ")", ":", "base_placeholder", "=", "self", ".", "_base_placeholder", "if", "base_placeholder", "is", "None", ":", "return", "None", "inherited_value", "=", "getattr", "(", "base_placeholder", ",", "attr_nam...	37.1	10.7
def _infer_precision(base_precision, bins): """Infer an appropriate precision for _round_frac """ for precision in range(base_precision, 20): levels = [_round_frac(b, precision) for b in bins] if algos.unique(levels).size == bins.size: return precision return base_precision	[ "def", "_infer_precision", "(", "base_precision", ",", "bins", ")", ":", "for", "precision", "in", "range", "(", "base_precision", ",", "20", ")", ":", "levels", "=", "[", "_round_frac", "(", "b", ",", "precision", ")", "for", "b", "in", "bins", "]", "...	38.875	8.125
def imethodcallPayload(self, methodname, localnsp, **kwargs): """Generate the XML payload for an intrinsic methodcall.""" param_list = [pywbem.IPARAMVALUE(x[0], pywbem.tocimxml(x[1])) for x in kwargs.items()] payload = cim_xml.CIM( cim_xml.MESSAGE( ...	[ "def", "imethodcallPayload", "(", "self", ",", "methodname", ",", "localnsp", ",", "", "", "kwargs", ")", ":", "param_list", "=", "[", "pywbem", ".", "IPARAMVALUE", "(", "x", "[", "0", "]", ",", "pywbem", ".", "tocimxml", "(", "x", "[", "1", "]", ...	37.526316	15.052632
def RecurseKey(recur_item, depth=15, key_path=''): """Flattens nested dictionaries and lists by yielding it's values. The hierarchy of a plist file is a series of nested dictionaries and lists. This is a helper function helps plugins navigate the structure without having to reimplement their own recursive meth...	[ "def", "RecurseKey", "(", "recur_item", ",", "depth", "=", "15", ",", "key_path", "=", "''", ")", ":", "if", "depth", "<", "1", ":", "logger", ".", "debug", "(", "'Recursion limit hit for key: {0:s}'", ".", "format", "(", "key_path", ")", ")", "return", ...	33.807018	23.368421
def inverse(self): """ returns q.conjugate()/q.norm()2 So if the quaternion is unit length, it is the same as the conjugate. """ new = self.conjugate() tmp = self.norm()2 new.w /= tmp new.x /= tmp new.y /= tmp new.z /= tmp ...	[ "def", "inverse", "(", "self", ")", ":", "new", "=", "self", ".", "conjugate", "(", ")", "tmp", "=", "self", ".", "norm", "(", ")", "**", "2", "new", ".", "w", "/=", "tmp", "new", ".", "x", "/=", "tmp", "new", ".", "y", "/=", "tmp", "new", ...	24.769231	16.307692
def setBrush(self, b, resize=0, proportional=None): """ Sets the size of the current :py:class:`Brush`. :param brush: The :py:class:`Brush` object to use as a brush. :param resize: An optional absolute value to resize the brush before using it. :param proportional: An optional relative float 0-1 value to r...	[ "def", "setBrush", "(", "self", ",", "b", ",", "resize", "=", "0", ",", "proportional", "=", "None", ")", ":", "if", "proportional", "!=", "None", ":", "resize", "=", "int", "(", "self", ".", "brush", ".", "brushSize", "*", "0.5", ")", "b", ".", ...	40.333333	18.866667
def supported_operations(self): """ All file operations supported by the camera. """ return tuple(op for op in backend.FILE_OPS if self._operations & op)	[ "def", "supported_operations", "(", "self", ")", ":", "return", "tuple", "(", "op", "for", "op", "in", "backend", ".", "FILE_OPS", "if", "self", ".", "_operations", "&", "op", ")" ]	55.666667	15
def _get_sample_select(samples, keep): """Returns a vector of True/False to keep samples.""" k = np.ones_like(samples, dtype=bool) if keep is not None: k = np.array([s in keep for s in samples], dtype=bool) if np.sum(k) == 0: logger.warning("No samples matched the keep list") ...	[ "def", "_get_sample_select", "(", "samples", ",", "keep", ")", ":", "k", "=", "np", ".", "ones_like", "(", "samples", ",", "dtype", "=", "bool", ")", "if", "keep", "is", "not", "None", ":", "k", "=", "np", ".", "array", "(", "[", "s", "in", "keep...	40.25	13.125
def fromString( parent, xmlstring, actions = None ): """ Loads the xml string as xml data and then calls the fromXml method. :param parent \| <QWidget> xmlstring \| <str> actions \| {<str> name: <QAction>, .. } \|\| None :retu...	[ "def", "fromString", "(", "parent", ",", "xmlstring", ",", "actions", "=", "None", ")", ":", "try", ":", "xdata", "=", "ElementTree", ".", "fromstring", "(", "xmlstring", ")", "except", "ExpatError", ",", "e", ":", "logger", ".", "exception", "(", "e", ...	31.388889	16.722222
def window_bohman(N): r"""Bohman tapering window :param N: window length .. math:: w(n) = (1-\|x\|) \cos (\pi \|x\|) + \frac{1}{\pi} \sin(\pi \|x\|) where x is a length N vector of linearly spaced values between -1 and 1. .. plot:: :width: 80% :include-source: from spectru...	[ "def", "window_bohman", "(", "N", ")", ":", "x", "=", "linspace", "(", "-", "1", ",", "1", ",", "N", ")", "w", "=", "(", "1.", "-", "abs", "(", "x", ")", ")", "", "cos", "(", "pi", "", "abs", "(", "x", ")", ")", "+", "1.", "/", "pi", ...	23.636364	23.045455
def addLocation(self, locationUri, weight): """ add relevant location to the topic page @param locationUri: uri of the location to add @param weight: importance of the provided location (typically in range 1 - 50) """ assert isinstance(weight, (float, int)), "weight value...	[ "def", "addLocation", "(", "self", ",", "locationUri", ",", "weight", ")", ":", "assert", "isinstance", "(", "weight", ",", "(", "float", ",", "int", ")", ")", ",", "\"weight value has to be a positive or negative integer\"", "self", ".", "topicPage", "[", "\"lo...	54.375	21.625
def user_path(self, team, user): """ Returns the path to directory with the user's package repositories. """ return os.path.join(self.team_path(team), user)	[ "def", "user_path", "(", "self", ",", "team", ",", "user", ")", ":", "return", "os", ".", "path", ".", "join", "(", "self", ".", "team_path", "(", "team", ")", ",", "user", ")" ]	36.8	11.6
def create_privkey(self): """ This is called by post_build() for key creation. """ if self.group in _tls_named_ffdh_groups: params = _ffdh_groups[_tls_named_ffdh_groups[self.group]][0] privkey = params.generate_private_key() self.privkey = privkey ...	[ "def", "create_privkey", "(", "self", ")", ":", "if", "self", ".", "group", "in", "_tls_named_ffdh_groups", ":", "params", "=", "_ffdh_groups", "[", "_tls_named_ffdh_groups", "[", "self", ".", "group", "]", "]", "[", "0", "]", "privkey", "=", "params", "."...	47.290323	13.870968
def probePlane(img, origin=(0, 0, 0), normal=(1, 0, 0)): """ Takes a ``vtkImageData`` and probes its scalars on a plane. .. hint:: \|probePlane\| \|probePlane.py\|_ """ plane = vtk.vtkPlane() plane.SetOrigin(origin) plane.SetNormal(normal) planeCut = vtk.vtkCutter() planeCut.SetInputDa...	[ "def", "probePlane", "(", "img", ",", "origin", "=", "(", "0", ",", "0", ",", "0", ")", ",", "normal", "=", "(", "1", ",", "0", ",", "0", ")", ")", ":", "plane", "=", "vtk", ".", "vtkPlane", "(", ")", "plane", ".", "SetOrigin", "(", "origin",...	31.764706	17.529412
def contrast(image, mask = slice(None)): r""" Takes a simple or multi-spectral image and returns the contrast of the texture. Fcon = standard_deviation(gray_value) / (kurtosis(gray_value)**0.25) Parameters ---------- image : array_like or list/tuple of array_like A single imag...	[ "def", "contrast", "(", "image", ",", "mask", "=", "slice", "(", "None", ")", ")", ":", "image", "=", "numpy", ".", "asarray", "(", "image", ")", "# set default mask or apply given mask", "if", "not", "type", "(", "mask", ")", "is", "slice", ":", "if", ...	30.756757	24.189189
def _resolve_argn(macro, args): """Get argument from macro name ie : $ARG3$ -> args[2] :param macro: macro to parse :type macro: :param args: args given to command line :type args: :return: argument at position N-1 in args table (where N is the int parsed) ...	[ "def", "_resolve_argn", "(", "macro", ",", "args", ")", ":", "# first, get the number of args", "_id", "=", "None", "matches", "=", "re", ".", "search", "(", "r'ARG(?P<id>\\d+)'", ",", "macro", ")", "if", "matches", "is", "not", "None", ":", "_id", "=", "i...	32.681818	14.954545
def set_visible(self, visible): """ Set the visibility of the widget. """ v = View.VISIBILITY_VISIBLE if visible else View.VISIBILITY_GONE self.widget.setVisibility(v)	[ "def", "set_visible", "(", "self", ",", "visible", ")", ":", "v", "=", "View", ".", "VISIBILITY_VISIBLE", "if", "visible", "else", "View", ".", "VISIBILITY_GONE", "self", ".", "widget", ".", "setVisibility", "(", "v", ")" ]	32.5	14.166667
def prior_dates(args, *kwargs): """Get the prior distribution of calibrated radiocarbon dates""" try: chron = args[0] except IndexError: chron = kwargs['coredates'] d_r = np.array(kwargs['d_r']) d_std = np.array(kwargs['d_std']) t_a = np.array(k...	[ "def", "prior_dates", "(", "", "args", ",", "", "*", "kwargs", ")", ":", "try", ":", "chron", "=", "args", "[", "0", "]", "except", "IndexError", ":", "chron", "=", "kwargs", "[", "'coredates'", "]", "d_r", "=", "np", ".", "array", "(", "kwargs",...	31.076923	16.307692
def validate_maildirs(ctx, param, value): """ Check that folders are maildirs. """ for path in value: for subdir in MD_SUBDIRS: if not os.path.isdir(os.path.join(path, subdir)): raise click.BadParameter( '{} is not a maildir (missing {!r} sub-directory).'....	[ "def", "validate_maildirs", "(", "ctx", ",", "param", ",", "value", ")", ":", "for", "path", "in", "value", ":", "for", "subdir", "in", "MD_SUBDIRS", ":", "if", "not", "os", ".", "path", ".", "isdir", "(", "os", ".", "path", ".", "join", "(", "path...	41.666667	12.555556
def make_app(global_conf, full_stack=True, **app_conf): """Create a Pylons WSGI application and return it ``global_conf`` The inherited configuration for this application. Normally from the [DEFAULT] section of the Paste ini file. ``full_stack`` Whether or not this applicat...	[ "def", "make_app", "(", "global_conf", ",", "full_stack", "=", "True", ",", "", "", "app_conf", ")", ":", "# Configure the Pylons environment\r", "load_environment", "(", "global_conf", ",", "app_conf", ")", "# The Pylons WSGI app\r", "app", "=", "PylonsApp", "(",...	35.655738	21.52459
def addFilteringOptions(parser, samfileIsPositionalArg=False): """ Add options to an argument parser for filtering SAM/BAM. @param samfileIsPositionalArg: If C{True} the SAM/BAM file must be given as the final argument on the command line (without being preceded by --sam...	[ "def", "addFilteringOptions", "(", "parser", ",", "samfileIsPositionalArg", "=", "False", ")", ":", "parser", ".", "add_argument", "(", "'%ssamfile'", "%", "(", "''", "if", "samfileIsPositionalArg", "else", "'--'", ")", ",", "required", "=", "True", ",", "help...	44.40678	23.932203
def updateNewCredentialValues(self): """ Set the new credential values to the credentials to use, and delete the new ones """ credentials_base = "disk.0.os.credentials." new_credentials_base = "disk.0.os.credentials.new." for elem in ['password', 'public_key', 'private_...	[ "def", "updateNewCredentialValues", "(", "self", ")", ":", "credentials_base", "=", "\"disk.0.os.credentials.\"", "new_credentials_base", "=", "\"disk.0.os.credentials.new.\"", "for", "elem", "in", "[", "'password'", ",", "'public_key'", ",", "'private_key'", "]", ":", ...	44.333333	23.166667
def setup_logging(self): """ Configure the logging framework. """ if self.config.debug: util.setup_logging(level=logging.DEBUG) util.activate_debug_shell_on_signal() else: util.setup_logging(level=logging.INFO)	[ "def", "setup_logging", "(", "self", ")", ":", "if", "self", ".", "config", ".", "debug", ":", "util", ".", "setup_logging", "(", "level", "=", "logging", ".", "DEBUG", ")", "util", ".", "activate_debug_shell_on_signal", "(", ")", "else", ":", "util", "....	30.888889	9.333333
async def stop_async(self): """ Terminiates the partition manger. """ self.cancellation_token.cancel() if self.run_task and not self.run_task.done(): await self.run_task	[ "async", "def", "stop_async", "(", "self", ")", ":", "self", ".", "cancellation_token", ".", "cancel", "(", ")", "if", "self", ".", "run_task", "and", "not", "self", ".", "run_task", ".", "done", "(", ")", ":", "await", "self", ".", "run_task" ]	30.714286	5.285714
def get_and_cache_account(self, addr): """Gets and caches an account for an addres, creates blank if not found. :param addr: :return: """ if addr in self.cache: return self.cache[addr] rlpdata = self.secure_trie.get(addr) if ( rlp...	[ "def", "get_and_cache_account", "(", "self", ",", "addr", ")", ":", "if", "addr", "in", "self", ".", "cache", ":", "return", "self", ".", "cache", "[", "addr", "]", "rlpdata", "=", "self", ".", "secure_trie", ".", "get", "(", "addr", ")", "if", "(", ...	29.333333	16.416667
def lazy_send(chainlet, chunks): """ Canonical version of `chainlet_send` that always takes and returns an iterable :param chainlet: the chainlet to receive and return data :type chainlet: chainlink.ChainLink :param chunks: the stream slice of data to pass to ``chainlet`` :type chunks: iterable...	[ "def", "lazy_send", "(", "chainlet", ",", "chunks", ")", ":", "fork", ",", "join", "=", "chainlet", ".", "chain_fork", ",", "chainlet", ".", "chain_join", "if", "fork", "and", "join", ":", "return", "_send_n_get_m", "(", "chainlet", ",", "chunks", ")", "...	36.3	18.1
def set_eep(self, data): ''' Update packet data based on EEP. Input data is a dictionary with keys corresponding to the EEP. ''' self._bit_data, self._bit_status = self.eep.set_values(self._profile, self._bit_data, self._bit_status, data)	[ "def", "set_eep", "(", "self", ",", "data", ")", ":", "self", ".", "_bit_data", ",", "self", ".", "_bit_status", "=", "self", ".", "eep", ".", "set_values", "(", "self", ".", "_profile", ",", "self", ".", "_bit_data", ",", "self", ".", "_bit_status", ...	84	54.666667
def assert_not_equal(first, second, msg_fmt="{msg}"): """Fail if first equals second, as determined by the '==' operator. >>> assert_not_equal(5, 8) >>> assert_not_equal(-7, -7.0) Traceback (most recent call last): ... AssertionError: -7 == -7.0 The following msg_fmt arguments are supp...	[ "def", "assert_not_equal", "(", "first", ",", "second", ",", "msg_fmt", "=", "\"{msg}\"", ")", ":", "if", "first", "==", "second", ":", "msg", "=", "\"{!r} == {!r}\"", ".", "format", "(", "first", ",", "second", ")", "fail", "(", "msg_fmt", ".", "format"...	31.388889	14.944444
def _multi_value_field(self, field): """ Private method that returns `True` if a field is multi-valued, else `False`. Required arguemnts: `field` -- The field to lookup Returns a boolean value indicating whether the field is multi-valued. """ for fie...	[ "def", "_multi_value_field", "(", "self", ",", "field", ")", ":", "for", "field_dict", "in", "self", ".", "schema", ":", "if", "field_dict", "[", "'field_name'", "]", "==", "field", ":", "return", "field_dict", "[", "'multi_valued'", "]", "==", "'true'", "...	32.928571	17.5
def listen_tta(self, target, timeout): """Listen timeout seconds for a Type A activation at 106 kbps. The ``sens_res``, ``sdd_res``, and ``sel_res`` response data must be provided and ``sdd_res`` must be a 4 byte UID that starts with ``08h``. Depending on ``sel_res`` an activation may ...	[ "def", "listen_tta", "(", "self", ",", "target", ",", "timeout", ")", ":", "return", "super", "(", "Device", ",", "self", ")", ".", "listen_tta", "(", "target", ",", "timeout", ")" ]	53.545455	20.545455
def timeseries(self): """ Load time series It returns the actual time series used in power flow analysis. If :attr:`_timeseries` is not :obj:`None`, it is returned. Otherwise, :meth:`timeseries()` looks for time series of the according sector in :class:`~.grid.network.Ti...	[ "def", "timeseries", "(", "self", ")", ":", "if", "self", ".", "_timeseries", "is", "None", ":", "if", "isinstance", "(", "self", ".", "grid", ",", "MVGrid", ")", ":", "voltage_level", "=", "'mv'", "elif", "isinstance", "(", "self", ".", "grid", ",", ...	34.964912	16.964912
def measures(measurements, *kwargs): """Decorator-maker used to declare measurements for phases. See the measurements module docstring for examples of usage. Args: measurements: Measurement objects to declare, or a string name from which to create a Measurement. kwargs: Keyword arguments to pa...	[ "def", "measures", "(", "", "measurements", ",", "", "*", "kwargs", ")", ":", "def", "_maybe_make", "(", "meas", ")", ":", "\"\"\"Turn strings into Measurement objects if necessary.\"\"\"", "if", "isinstance", "(", "meas", ",", "Measurement", ")", ":", "return",...	40.877551	23
def get_statement_queries(stmts, **params): """Get queries used to search based on a statement. In addition to the stmts, you can enter any parameters standard to the query. See https://github.com/indralab/indra_db/rest_api for a full list. Parameters ---------- stmts : list[Statement] ...	[ "def", "get_statement_queries", "(", "stmts", ",", "", "", "params", ")", ":", "def", "pick_ns", "(", "ag", ")", ":", "for", "ns", "in", "[", "'HGNC'", ",", "'FPLX'", ",", "'CHEMBL'", ",", "'CHEBI'", ",", "'GO'", ",", "'MESH'", "]", ":", "if", "n...	35.02439	18.439024
def create_tumor_bamdir(tumor, tumor_bam, normal_bam, work_dir): """Create expected input directory with tumor/normal BAMs in one place. """ bam_dir = utils.safe_makedir(os.path.join(work_dir, tumor, "in_bams")) normal_bam_ready = os.path.join(bam_dir, os.path.basename(normal_bam)) utils.symlink_plu...	[ "def", "create_tumor_bamdir", "(", "tumor", ",", "tumor_bam", ",", "normal_bam", ",", "work_dir", ")", ":", "bam_dir", "=", "utils", ".", "safe_makedir", "(", "os", ".", "path", ".", "join", "(", "work_dir", ",", "tumor", ",", "\"in_bams\"", ")", ")", "n...	56	16.666667
def cli(env, identifier, name, all, note): """Capture one or all disks from a virtual server to a SoftLayer image.""" vsi = SoftLayer.VSManager(env.client) vs_id = helpers.resolve_id(vsi.resolve_ids, identifier, 'VS') capture = vsi.capture(vs_id, name, all, note) table = formatting.KeyValueTable(...	[ "def", "cli", "(", "env", ",", "identifier", ",", "name", ",", "all", ",", "note", ")", ":", "vsi", "=", "SoftLayer", ".", "VSManager", "(", "env", ".", "client", ")", "vs_id", "=", "helpers", ".", "resolve_id", "(", "vsi", ".", "resolve_ids", ",", ...	38.473684	18.052632
def set_attributes(self, **attributes): """ Set group of attributes without calling set between attributes regardless of global auto_set. Set will be called only after all attributes are set based on global auto_set. :param attributes: dictionary of <attribute, value> to set. """ ...	[ "def", "set_attributes", "(", "self", ",", "", "", "attributes", ")", ":", "auto_set", "=", "IxeObject", ".", "get_auto_set", "(", ")", "IxeObject", ".", "set_auto_set", "(", "False", ")", "for", "name", ",", "value", "in", "attributes", ".", "items", ...	37.133333	16.2
def str(self,local): """ Return the string representation of the time range :param local: if False [default] use UTC datetime. If True use localtz """ s = self.start_time.str(local) \ + u" to " \ + self.end_time.str(local) return s	[ "def", "str", "(", "self", ",", "local", ")", ":", "s", "=", "self", ".", "start_time", ".", "str", "(", "local", ")", "+", "u\" to \"", "+", "self", ".", "end_time", ".", "str", "(", "local", ")", "return", "s" ]	32.444444	16.111111
def show(self, ax:plt.Axes=None, figsize:tuple=(3,3), title:Optional[str]=None, hide_axis:bool=True, cmap:str=None, y:Any=None, **kwargs): "Show image on `ax` with `title`, using `cmap` if single-channel, overlaid with optional `y`" cmap = ifnone(cmap, defaults.cmap) ax = show_imag...	[ "def", "show", "(", "self", ",", "ax", ":", "plt", ".", "Axes", "=", "None", ",", "figsize", ":", "tuple", "=", "(", "3", ",", "3", ")", ",", "title", ":", "Optional", "[", "str", "]", "=", "None", ",", "hide_axis", ":", "bool", "=", "True", ...	68.142857	28.142857

def generate(self, *args, **kwargs): """ Implementation for the generate method defined in ReportBase. Generates a html report and saves it. :param args: 1 argument, which is the filename :param kwargs: 3 keyword arguments with keys 'title', 'heads' and 'refresh' :return...

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40

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def set_user_profile(self, displayname=None, avatar_url=None, reason="Changing room profile information"): """Set user profile within a room. This sets displayname and avatar_url for the logged in user only in a specific...

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def _get_available_extensions(): """Get a list of available file extensions to make it easy for tab-completion and exception handling. """ extensions = [] # from filenames parsers_dir = os.path.join(os.path.dirname(__file__)) glob_filename = os.path.join(parsers_dir, "*" + _FILENAME_SUFFIX ...

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def _parse_args(): """ Parses the command line arguments. :return: Namespace with arguments. :rtype: Namespace """ parser = argparse.ArgumentParser(description='rain - a new sort of automated builder.') parser.add_argument('action', help='what shall we do?', default='build', nargs='?',...

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40.230769

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def screenshots_done(self, jobid): """ Return true if the screenshots job is done """ resp = self.session.get(os.path.join(self.api_url, '{0}.json'.format(jobid))) resp = self._process_response(resp) return True if resp.json()['state'] == 'done' else False

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42.571429

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def update_cov(self): """Recursively compute the covariance matrix for the multivariate normal proposal distribution. This method is called every self.interval once self.delay iterations have been performed. """ scaling = (2.4) ** 2 / self.dim # Gelman et al. 1996. ...

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41.454545

21.945455

def build_actions(self): """Create an ActionCollection that will perform sanity checks, copy the file, create a database entry and perform cleanup actions and in case of a failure clean everything up. :param work: the workfile :type work: :class:`JB_File` :param release: the rel...

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56.06

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def get_reversed_statuses(context): """Return a mapping of exit codes to status strings. Args: context (scriptworker.context.Context): the scriptworker context Returns: dict: the mapping of exit codes to status strings. """ _rev = {v: k for k, v in STATUSES.items()} _rev.updat...

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28.307692

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def case_insensitive_file_search(directory, pattern): """ Looks for file with pattern with case insensitive search """ try: return os.path.join( directory, [filename for filename in os.listdir(directory) if re.search(pattern, filename, re.IGNORECASE)][0]) ...

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32.416667

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def extract_uhs(dstore, what): """ Extracts uniform hazard spectra. Use it as /extract/uhs?kind=mean or /extract/uhs?kind=rlz-0, etc """ info = get_info(dstore) if what == '': # npz exports for QGIS sitecol = dstore['sitecol'] mesh = get_mesh(sitecol, complete=False) dic...

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33.972222

13.305556

def add_method(self, pattern): """Decorator to add new dispatch functions.""" def wrap(f): def frozen_function(class_instance, f): def _(pattern, *args, **kwargs): return f(class_instance, pattern, *args, **kwargs) return _ se...

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31.230769

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def values(obj, glob, separator="/", afilter=None, dirs=True): """ Given an object and a path glob, return an array of all values which match the glob. The arguments to this function are identical to those of search(), and it is primarily a shorthand for a list comprehension over a yielded search ca...

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55.375

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def update(self, query_name, saved_query_attributes): """ Given a dict of attributes to be updated, update only those attributes in the Saved Query at the resource given by 'query_name'. This will perform two HTTP requests--one to fetch the query definition, and one to set the ne...

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43.617021

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def write_to_file(self, file_path='', date=(datetime.date.today()), organization='llnl'): """ Writes stargazers data to file. """ with open(file_path, 'w+') as out: out.write('date,organization,stargazers\n') sorted_stargazers = sorted(self.stargazers)#sor...

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42.454545

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def plot_subtract_from_data_all(self): """ subtract model components from data :return: """ f, axes = plt.subplots(2, 3, figsize=(16, 8)) self.subtract_from_data_plot(ax=axes[0, 0], text='Data') self.subtract_from_data_plot(ax=axes[0, 1], text='Data - Point Sour...

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53.842105

31.631579

def refresh_token( self, token_url, refresh_token=None, body="", auth=None, timeout=None, headers=None, verify=True, proxies=None, **kwargs ): """Fetch a new access token using a refresh token. :param token_url: The tok...

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37.216216

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def add_item(self, item, replace = False): """ Add an item to the roster. This will not automatically update the roster on the server. :Parameters: - `item`: the item to add - `replace`: if `True` then existing item will be replaced, otherwise a `V...

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32.545455

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def QA_fetch_user(user_cookie, db=DATABASE): """ get the user Arguments: user_cookie : str the unique cookie_id for a user Keyword Arguments: db: database for query Returns: list --- [ACCOUNT] """ collection = DATABASE.account return [res for res in collection...

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23.6

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def auth_aliases(d): """Interpret user/password aliases. """ for alias, real in ((USER_KEY, "readonly_user"), (PASS_KEY, "readonly_password")): if alias in d: d[real] = d[alias] del d[alias]

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31.375

11.625

def _next(self, state_class, *args): """Transition into the next state. :param type state_class: a subclass of :class:`State`. It is intialized with the communication object and :paramref:`args` :param args: additional arguments """ self._communication.state = state_cl...

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43

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def plotlyFrequencyHistogram(counts): """ x-axis is a count of how many times a bit was active y-axis is number of bits that have that frequency """ data = [ go.Histogram( x=tuple(count for _, _, count in counts.getNonZerosSorted()) ) ] py.plot(data, filename=os.environ.get("HEATMAP_NAME", ...

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31.5

18.666667

def to_dict(self,include_node_id=False,no_attributes=False,track_namespaces=False): """ This function is currently geared very much towards writing STIX/CybOX objects to a dictionary. That should not be the case -- the function needs to be generic just as the from_dict function. ...

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42.24031

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def labels(self, value): """ Setter for **self.__labels** attribute. :param value: Attribute value. :type value: tuple """ if value is not None: assert type(value) is tuple, "'{0}' attribute: '{1}' type is not 'tuple'!".format("labels", value) ass...

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45.785714

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def parse_srs(t_srs, src_ds_list=None): """Parse arbitrary input t_srs Parameters ---------- t_srs : str or gdal.Dataset or filename Arbitrary input t_srs src_ds_list : list of gdal.Dataset objects, optional Needed if specifying 'first' or 'last' Returns ------- t_srs ...

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34.478261

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def describe(self, req=None, resp=None, **kwargs): """Describe API resource using resource introspection. Additional description on derrived resource class can be added using keyword arguments and calling ``super().decribe()`` method call like following: .. code-block:: python ...

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36.020833

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def from_ast( pyast_node, node=None, node_cls=None, Node=Node, iter_fields=ast.iter_fields, AST=ast.AST): '''Convert the ast tree to a tater tree. ''' node_cls = node_cls or Node node = node or node_cls() name = pyast_node.__class__.__name__ attrs = [] for field, value in it...

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36.1

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def is_build_needed(self, data_sink, data_src): """ returns true if data_src needs to be rebuilt, given that data_sink has had a rebuild requested. """ return (self._gettask(data_src).last_build_time == 0 or self._gettask(data_src).last_build_time < se...

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50.428571

9.142857

def inferSuperimposedSequenceObjects(exp, sequenceId, objectId, sequences, objects): """Run inference on the given sequence.""" # Create the (loc, feat) pairs for this sequence for column 0. objectSensations = { 0: [pair for pair in sequences[sequenceId]] } inferConfig = { "object": sequenceId, "...

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33.684211

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def limit_keyphrases (path, phrase_limit=20): """ iterator for the most significant key phrases """ rank_thresh = None if isinstance(path, str): lex = [] for meta in json_iter(path): rl = RankedLexeme(**meta) lex.append(rl) else: lex = path ...

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def ajRadicaux(self, lemme): """ Calcule tous les radicaux du lemme l, * en se servant des modèles, ajoute à ce lemme, * et ensuite à la map * des radicaux de la classe Lemmat. Ligne type de lemme # ablŭo=ā̆blŭo|lego|ā̆blŭ|ā̆blūt|is, ere, lui, lutum # 0 ...

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def get_node_type(tree): """ returns the node type (leaf or span) of a subtree (i.e. Nucleus or Satellite) Parameters ---------- tree : nltk.tree.ParentedTree a tree representing a rhetorical structure (or a part of it) """ node_type = tree[0].label() assert node_type in NODE_TY...

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def _filtered_walk(path, file_filter): """ static method that calls os.walk, but filters out anything that doesn't match the filter """ for root, dirs, files in os.walk(path): log.debug('looking in %s', root) log.debug('files is %s', files) file_filter.set_root(root) files = filter(file_filter, fi...

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def create(self, mention, max_message_length): """ Create a message :param mention: JSON object containing mention details from Twitter (or an empty dict {}) :param max_message_length: Maximum allowable length for created message :return: A random message created using a Markov c...

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def qualify(workers, qualification, value, by_name, notify, sandbox): """Assign a qualification to 1 or more workers""" if not (workers and qualification and value): raise click.BadParameter( "Must specify a qualification ID, value/score, and at least one worker ID" ) mturk = _mt...

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def decode_offset_response(cls, response): """ Decode OffsetResponse into OffsetResponsePayloads Arguments: response: OffsetResponse Returns: list of OffsetResponsePayloads """ return [ kafka.structs.OffsetResponsePayload(topic, partition, error,...

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def main(target, label): """ Semver tag triggered deployment helper """ check_environment(target, label) click.secho('Fetching tags from the upstream ...') handler = TagHandler(git.list_tags()) print_information(handler, label) tag = handler.yield_tag(target, label) confirm(tag)

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def get(self, id, **options): '''Get a single item with the given ID''' if not self._item_path: raise AttributeError('get is not available for %s' % self._item_name) target = self._item_path % id json_data = self._redmine.get(target, **options) data = self._redmine.un...

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def getxattr(self, req, ino, name, size): """ Set an extended attribute Valid replies: reply_buf reply_data reply_xattr reply_err """ self.reply_err(req, errno.ENOSYS)

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def convert_mrf_to_syntax_mrf( mrf_lines, conversion_rules ): ''' Converts given lines from Filosoft's mrf format to syntactic analyzer's format, using the morph-category conversion rules from conversion_rules, and punctuation via method _convert_punctuation(); As a result of conversion, th...

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async def fetch_state(self, request): """Fetches data from a specific address in the validator's state tree. Request: query: - head: The id of the block to use as the head of the chain - address: The 70 character address of the data to be fetched Res...

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def toggle_settings( toolbar=False, nbname=False, hideprompt=False, kernellogo=False): """Toggle main notebook toolbar (e.g., buttons), filename, and kernel logo.""" toggle = '' if toolbar: toggle += 'div#maintoolbar {margin-left: 8px !important;}\n' toggle += '.toolbar.containe...

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def send_up(self, count): """ Sends the given number of up key presses. """ for i in range(count): self.interface.send_key(Key.UP)

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def trackerItem( self ): """ Returns the tracker item for this chart. :return <XChartTrackerItem> || None """ # check for the tracking enabled state if not self.isTrackingEnabled(): return None # generate a new tracker i...

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def info(): """Display app info. Examples: $ dj info No application, try running dj init. $ dj info Application: foo @ 2.7.9 Requirements: Django == 1.10 """ application = get_current_application() info = application.info() stdout.write(info) return info

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def _compute_fans(shape): """Computes the number of input and output units for a weight shape. Args: shape: Integer shape tuple or TF tensor shape. Returns: A tuple of scalars (fan_in, fan_out). """ if len(shape) < 1: # Just to avoid errors for constants. fan_in = fan_out = 1 elif len(shape) ...

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def _format_stage_info(bar_width, stage_info, duration, timedelta_formatter=_pretty_time_delta): """Formats the Spark stage progress. Parameters ---------- bar_width : int Width of the progressbar to print out. stage_info : :class:`pyspark.status.StageInfo` Information about the run...

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def get_pub_date(self, undefined=""): """ Args: undefined (optional): Argument, which will be returned if the `pub_date` record is not found. Returns: str: Date of publication (month and year usually) or `undefined` \ if `pub_date` ...

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def ntp_server_key(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") ntp = ET.SubElement(config, "ntp", xmlns="urn:brocade.com:mgmt:brocade-ntp") server = ET.SubElement(ntp, "server") ip_key = ET.SubElement(server, "ip") ip_key.text = kwarg...

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def get_storage_pool_by_name(self, name): """ Get ScaleIO StoragePool object by its name :param name: Name of StoragePool :return: ScaleIO StoragePool object :raise KeyError: No StoragePool with specified name found :rtype: StoragePool object """ for stora...

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40.333333

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def MakeDynamicPotentialFunc(kBT_Gamma, density, SpringPotnlFunc): """ Creates the function that calculates the potential given the position (in volts) and the radius of the particle. Parameters ---------- kBT_Gamma : float Value of kB*T/Gamma density : float density of the...

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27.466667

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def get_groups_count(self, field=None): ''' Returns 'matches' from group response. If grouping on more than one field, provide the field argument to specify which count you are looking for. ''' field = field if field else self._determine_group_field(field) if 'ma...

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def as_dict( self, key="id" ): """ Return a dictionary containing all remaining motifs, using `key` as the dictionary key. """ rval = {} for motif in self: rval[ getattr( motif, key ) ] = motif return rval

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def strip_fhss(self, idx): """strip (2 byte) radiotap.fhss.hopset(1 byte) and radiotap.fhss.pattern(1 byte) :idx: int :return: int idx :return: collections.namedtuple """ fhss = collections.namedtuple('fhss', ['hopset', 'pattern']) fhss.hopset,...

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36.181818

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def sameAs(self, other): """ Check if this is the same location. :: >>> l = Location(pop=5, snap=100) >>> m = Location(pop=5.0, snap=100.0) >>> l.sameAs(m) 0 >>> l = Location(pop=5, snap=100) >>> m = Location(pop=5....

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26.5

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def run_step(context): """Parse input file and substitutes {tokens} from context. Args: context: pypyr.context.Context. Mandatory. The following context keys expected: - fileFormat - in. mandatory. str, path-like, or an iterable...

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def update(self, table, columns, values): """Update one or more existing table rows. :type table: str :param table: Name of the table to be modified. :type columns: list of str :param columns: Name of the table columns to be modified. :type values: list of lists ...

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def create_virtualenv(venv=VENV, install_pip=False): """Creates the virtual environment and installs PIP only into the virtual environment """ print 'Creating venv...', install = ['virtualenv', '-q', venv] run_command(install) print 'done.' print 'Installing pip in virtualenv...', ...

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def pf_to_n(L, pf, R): """Returns the number of non-intersecting spheres required to achieve as close to a given packing fraction as possible, along with the actual achieved packing fraction. for a number of non-intersecting spheres. Parameters ---------- L: float array, shape (d,) Syst...

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def div_img(img1, div2): """ Pixelwise division or divide by a number """ if is_img(div2): return img1.get_data()/div2.get_data() elif isinstance(div2, (float, int)): return img1.get_data()/div2 else: raise NotImplementedError('Cannot divide {}({}) by ' ...

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43.25

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def listed(self): """Print blacklist packages """ print("\nPackages in the blacklist:\n") for black in self.get_black(): if black: print("{0}{1}{2}".format(self.meta.color["GREEN"], black, self.meta.color["ENDC"])) ...

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def main(argv): """Train on examples and export the updated model weights.""" tf_records = argv[1:] logging.info("Training on %s records: %s to %s", len(tf_records), tf_records[0], tf_records[-1]) with utils.logged_timer("Training"): train(*tf_records) if FLAGS.export_path: ...

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37.571429

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def normalise_reads(self): """ Use bbnorm from the bbmap suite of tools to perform read normalisation """ logging.info('Normalising reads to a kmer depth of 100') for sample in self.metadata: # Set the name of the normalised read files sample.general.norma...

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def _inherited_value(self, attr_name): """ Return the attribute value, e.g. 'width' of the base placeholder this placeholder inherits from. """ base_placeholder = self._base_placeholder if base_placeholder is None: return None inherited_value = getattr...

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def _infer_precision(base_precision, bins): """Infer an appropriate precision for _round_frac """ for precision in range(base_precision, 20): levels = [_round_frac(b, precision) for b in bins] if algos.unique(levels).size == bins.size: return precision return base_precision

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def imethodcallPayload(self, methodname, localnsp, **kwargs): """Generate the XML payload for an intrinsic methodcall.""" param_list = [pywbem.IPARAMVALUE(x[0], pywbem.tocimxml(x[1])) for x in kwargs.items()] payload = cim_xml.CIM( cim_xml.MESSAGE( ...

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def RecurseKey(recur_item, depth=15, key_path=''): """Flattens nested dictionaries and lists by yielding it's values. The hierarchy of a plist file is a series of nested dictionaries and lists. This is a helper function helps plugins navigate the structure without having to reimplement their own recursive meth...

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def inverse(self): """ returns q.conjugate()/q.norm()**2 So if the quaternion is unit length, it is the same as the conjugate. """ new = self.conjugate() tmp = self.norm()**2 new.w /= tmp new.x /= tmp new.y /= tmp new.z /= tmp ...

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def setBrush(self, b, resize=0, proportional=None): """ Sets the size of the current :py:class:`Brush`. :param brush: The :py:class:`Brush` object to use as a brush. :param resize: An optional absolute value to resize the brush before using it. :param proportional: An optional relative float 0-1 value to r...

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def supported_operations(self): """ All file operations supported by the camera. """ return tuple(op for op in backend.FILE_OPS if self._operations & op)

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55.666667

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def _get_sample_select(samples, keep): """Returns a vector of True/False to keep samples.""" k = np.ones_like(samples, dtype=bool) if keep is not None: k = np.array([s in keep for s in samples], dtype=bool) if np.sum(k) == 0: logger.warning("No samples matched the keep list") ...

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40.25

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def fromString( parent, xmlstring, actions = None ): """ Loads the xml string as xml data and then calls the fromXml method. :param parent | <QWidget> xmlstring | <str> actions | {<str> name: <QAction>, .. } || None :retu...

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def window_bohman(N): r"""Bohman tapering window :param N: window length .. math:: w(n) = (1-|x|) \cos (\pi |x|) + \frac{1}{\pi} \sin(\pi |x|) where x is a length N vector of linearly spaced values between -1 and 1. .. plot:: :width: 80% :include-source: from spectru...

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23.045455

def addLocation(self, locationUri, weight): """ add relevant location to the topic page @param locationUri: uri of the location to add @param weight: importance of the provided location (typically in range 1 - 50) """ assert isinstance(weight, (float, int)), "weight value...

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54.375

21.625

def user_path(self, team, user): """ Returns the path to directory with the user's package repositories. """ return os.path.join(self.team_path(team), user)

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36.8

11.6

def create_privkey(self): """ This is called by post_build() for key creation. """ if self.group in _tls_named_ffdh_groups: params = _ffdh_groups[_tls_named_ffdh_groups[self.group]][0] privkey = params.generate_private_key() self.privkey = privkey ...

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47.290323

13.870968

def probePlane(img, origin=(0, 0, 0), normal=(1, 0, 0)): """ Takes a ``vtkImageData`` and probes its scalars on a plane. .. hint:: |probePlane| |probePlane.py|_ """ plane = vtk.vtkPlane() plane.SetOrigin(origin) plane.SetNormal(normal) planeCut = vtk.vtkCutter() planeCut.SetInputDa...

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31.764706

17.529412

def contrast(image, mask = slice(None)): r""" Takes a simple or multi-spectral image and returns the contrast of the texture. Fcon = standard_deviation(gray_value) / (kurtosis(gray_value)**0.25) Parameters ---------- image : array_like or list/tuple of array_like A single imag...

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30.756757

24.189189

def _resolve_argn(macro, args): """Get argument from macro name ie : $ARG3$ -> args[2] :param macro: macro to parse :type macro: :param args: args given to command line :type args: :return: argument at position N-1 in args table (where N is the int parsed) ...

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32.681818

14.954545

def set_visible(self, visible): """ Set the visibility of the widget. """ v = View.VISIBILITY_VISIBLE if visible else View.VISIBILITY_GONE self.widget.setVisibility(v)

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32.5

14.166667

def prior_dates(*args, **kwargs): """Get the prior distribution of calibrated radiocarbon dates""" try: chron = args[0] except IndexError: chron = kwargs['coredates'] d_r = np.array(kwargs['d_r']) d_std = np.array(kwargs['d_std']) t_a = np.array(k...

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31.076923

16.307692

def validate_maildirs(ctx, param, value): """ Check that folders are maildirs. """ for path in value: for subdir in MD_SUBDIRS: if not os.path.isdir(os.path.join(path, subdir)): raise click.BadParameter( '{} is not a maildir (missing {!r} sub-directory).'....

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41.666667

12.555556

def make_app(global_conf, full_stack=True, **app_conf): """Create a Pylons WSGI application and return it ``global_conf`` The inherited configuration for this application. Normally from the [DEFAULT] section of the Paste ini file. ``full_stack`` Whether or not this applicat...

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35.655738

21.52459

def addFilteringOptions(parser, samfileIsPositionalArg=False): """ Add options to an argument parser for filtering SAM/BAM. @param samfileIsPositionalArg: If C{True} the SAM/BAM file must be given as the final argument on the command line (without being preceded by --sam...

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44.40678

23.932203

def updateNewCredentialValues(self): """ Set the new credential values to the credentials to use, and delete the new ones """ credentials_base = "disk.0.os.credentials." new_credentials_base = "disk.0.os.credentials.new." for elem in ['password', 'public_key', 'private_...

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44.333333

23.166667

def setup_logging(self): """ Configure the logging framework. """ if self.config.debug: util.setup_logging(level=logging.DEBUG) util.activate_debug_shell_on_signal() else: util.setup_logging(level=logging.INFO)

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30.888889

9.333333

async def stop_async(self): """ Terminiates the partition manger. """ self.cancellation_token.cancel() if self.run_task and not self.run_task.done(): await self.run_task

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30.714286

5.285714

def get_and_cache_account(self, addr): """Gets and caches an account for an addres, creates blank if not found. :param addr: :return: """ if addr in self.cache: return self.cache[addr] rlpdata = self.secure_trie.get(addr) if ( rlp...

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29.333333

16.416667

def lazy_send(chainlet, chunks): """ Canonical version of `chainlet_send` that always takes and returns an iterable :param chainlet: the chainlet to receive and return data :type chainlet: chainlink.ChainLink :param chunks: the stream slice of data to pass to ``chainlet`` :type chunks: iterable...

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36.3

18.1

def set_eep(self, data): ''' Update packet data based on EEP. Input data is a dictionary with keys corresponding to the EEP. ''' self._bit_data, self._bit_status = self.eep.set_values(self._profile, self._bit_data, self._bit_status, data)

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84

54.666667

def assert_not_equal(first, second, msg_fmt="{msg}"): """Fail if first equals second, as determined by the '==' operator. >>> assert_not_equal(5, 8) >>> assert_not_equal(-7, -7.0) Traceback (most recent call last): ... AssertionError: -7 == -7.0 The following msg_fmt arguments are supp...

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31.388889

14.944444

def _multi_value_field(self, field): """ Private method that returns `True` if a field is multi-valued, else `False`. Required arguemnts: `field` -- The field to lookup Returns a boolean value indicating whether the field is multi-valued. """ for fie...

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32.928571

17.5

def listen_tta(self, target, timeout): """Listen *timeout* seconds for a Type A activation at 106 kbps. The ``sens_res``, ``sdd_res``, and ``sel_res`` response data must be provided and ``sdd_res`` must be a 4 byte UID that starts with ``08h``. Depending on ``sel_res`` an activation may ...

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53.545455

20.545455

def timeseries(self): """ Load time series It returns the actual time series used in power flow analysis. If :attr:`_timeseries` is not :obj:`None`, it is returned. Otherwise, :meth:`timeseries()` looks for time series of the according sector in :class:`~.grid.network.Ti...

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34.964912

16.964912

def measures(*measurements, **kwargs): """Decorator-maker used to declare measurements for phases. See the measurements module docstring for examples of usage. Args: measurements: Measurement objects to declare, or a string name from which to create a Measurement. kwargs: Keyword arguments to pa...

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40.877551

23

def get_statement_queries(stmts, **params): """Get queries used to search based on a statement. In addition to the stmts, you can enter any parameters standard to the query. See https://github.com/indralab/indra_db/rest_api for a full list. Parameters ---------- stmts : list[Statement] ...

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35.02439

18.439024

def create_tumor_bamdir(tumor, tumor_bam, normal_bam, work_dir): """Create expected input directory with tumor/normal BAMs in one place. """ bam_dir = utils.safe_makedir(os.path.join(work_dir, tumor, "in_bams")) normal_bam_ready = os.path.join(bam_dir, os.path.basename(normal_bam)) utils.symlink_plu...

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56

16.666667

def cli(env, identifier, name, all, note): """Capture one or all disks from a virtual server to a SoftLayer image.""" vsi = SoftLayer.VSManager(env.client) vs_id = helpers.resolve_id(vsi.resolve_ids, identifier, 'VS') capture = vsi.capture(vs_id, name, all, note) table = formatting.KeyValueTable(...

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38.473684

18.052632

def set_attributes(self, **attributes): """ Set group of attributes without calling set between attributes regardless of global auto_set. Set will be called only after all attributes are set based on global auto_set. :param attributes: dictionary of <attribute, value> to set. """ ...

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37.133333

16.2

def str(self,local): """ Return the string representation of the time range :param local: if False [default] use UTC datetime. If True use localtz """ s = self.start_time.str(local) \ + u" to " \ + self.end_time.str(local) return s

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32.444444

16.111111

def show(self, ax:plt.Axes=None, figsize:tuple=(3,3), title:Optional[str]=None, hide_axis:bool=True, cmap:str=None, y:Any=None, **kwargs): "Show image on `ax` with `title`, using `cmap` if single-channel, overlaid with optional `y`" cmap = ifnone(cmap, defaults.cmap) ax = show_imag...

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68.142857

28.142857