kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def _forwardImplementation(self, inbuf, outbuf): """ Proportional probability method. """ assert self.module propensities = self.module.getActionValues(0) summedProps = sum(propensities) probabilities = propensities / summedProps action = eventGenerator(probabi...	[ "def", "_forwardImplementation", "(", "self", ",", "inbuf", ",", "outbuf", ")", ":", "assert", "self", ".", "module", "propensities", "=", "self", ".", "module", ".", "getActionValues", "(", "0", ")", "summedProps", "=", "sum", "(", "propensities", ")", "p...	28.571429	15.357143
def metadata(self): """Retrieves metadata about the bucket. Returns: A BucketMetadata instance with information about this bucket. Raises: Exception if there was an error requesting the bucket's metadata. """ if self._info is None: try: self._info = self._api.buckets_get(s...	[ "def", "metadata", "(", "self", ")", ":", "if", "self", ".", "_info", "is", "None", ":", "try", ":", "self", ".", "_info", "=", "self", ".", "_api", ".", "buckets_get", "(", "self", ".", "_name", ")", "except", "Exception", "as", "e", ":", "raise",...	28.266667	22.133333
def get_election(self, row, race): """ Gets the Election object for the given row of election results. Depends on knowing the Race object. If this is the presidential election, this will determine the Division attached to the election based on the row's statename. This ...	[ "def", "get_election", "(", "self", ",", "row", ",", "race", ")", ":", "election_day", "=", "election", ".", "ElectionDay", ".", "objects", ".", "get", "(", "date", "=", "row", "[", "\"electiondate\"", "]", ")", "if", "row", "[", "\"racetypeid\"", "]", ...	34.06	18.38
def count_words(pattern): """ Count the number of words in a pattern as well as the total length of those words :param pattern: The pattern to parse :type pattern: str :return: The word count first, then the total length of all words :rtype : tuple of (int, int) ...	[ "def", "count_words", "(", "pattern", ")", ":", "word_pattern", "=", "re", ".", "compile", "(", "r'(\\b(?<![\\(\\)\\[\\]\\\|])\\w\\w*\\b(?![\\(\\)\\[\\]\\\|]))'", ",", "re", ".", "IGNORECASE", ")", "words", "=", "word_pattern", ".", "findall", "(", "pattern", ")", "...	35.9375	20.3125
def set_col_min_width(self, x: int, min_width: int): """Sets a minimum width for blocks in the column with coordinate x.""" if x < 0: raise IndexError('x < 0') self._min_widths[x] = min_width	[ "def", "set_col_min_width", "(", "self", ",", "x", ":", "int", ",", "min_width", ":", "int", ")", ":", "if", "x", "<", "0", ":", "raise", "IndexError", "(", "'x < 0'", ")", "self", ".", "_min_widths", "[", "x", "]", "=", "min_width" ]	44.6	7.8
def mappability(args): """ %prog mappability reference.fasta Generate 50mer mappability for reference genome. Commands are based on gem mapper. See instructions: <https://github.com/xuefzhao/Reference.Mappability> """ p = OptionParser(mappability.__doc__) p.add_option("--mer", default=5...	[ "def", "mappability", "(", "args", ")", ":", "p", "=", "OptionParser", "(", "mappability", ".", "__doc__", ")", "p", ".", "add_option", "(", "\"--mer\"", ",", "default", "=", "50", ",", "type", "=", "\"int\"", ",", "help", "=", "\"User mer size\"", ")", ...	26.833333	19.958333
def tpot_driver(args): """Perform a TPOT run.""" if args.VERBOSITY >= 2: _print_args(args) input_data = _read_data_file(args) features = input_data.drop(args.TARGET_NAME, axis=1) training_features, testing_features, training_target, testing_target = \ train_test_split(features, inp...	[ "def", "tpot_driver", "(", "args", ")", ":", "if", "args", ".", "VERBOSITY", ">=", "2", ":", "_print_args", "(", "args", ")", "input_data", "=", "_read_data_file", "(", "args", ")", "features", "=", "input_data", ".", "drop", "(", "args", ".", "TARGET_NA...	39.135593	21.288136
def get_nodes(self, coord, coords): """Get the variables containing the definition of the nodes Parameters ---------- coord: xarray.Coordinate The mesh variable coords: dict The coordinates to use to get node coordinates""" def get_coord(coord): ...	[ "def", "get_nodes", "(", "self", ",", "coord", ",", "coords", ")", ":", "def", "get_coord", "(", "coord", ")", ":", "return", "coords", ".", "get", "(", "coord", ",", "self", ".", "ds", ".", "coords", ".", "get", "(", "coord", ")", ")", "return", ...	37.153846	15.769231
def init(ctx): """Initialize the project for use with EasyCI. This installs the necessary git hooks (pre-commit + pre-push) and add a config file if one does not already exists. """ # install hooks git = ctx.obj['vcs'] click.echo("Installing hooks...", nl=False) for old in ['commit-msg']...	[ "def", "init", "(", "ctx", ")", ":", "# install hooks", "git", "=", "ctx", ".", "obj", "[", "'vcs'", "]", "click", ".", "echo", "(", "\"Installing hooks...\"", ",", "nl", "=", "False", ")", "for", "old", "in", "[", "'commit-msg'", "]", ":", "path", "...	35.90625	16.75
def invalidate_cache(self): """ Invalidate httpBL cache """ if self._use_cache: self._cache_version += 1 self._cache.increment('cached_httpbl_{0}_version'.format(self._api_key))	[ "def", "invalidate_cache", "(", "self", ")", ":", "if", "self", ".", "_use_cache", ":", "self", ".", "_cache_version", "+=", "1", "self", ".", "_cache", ".", "increment", "(", "'cached_httpbl_{0}_version'", ".", "format", "(", "self", ".", "_api_key", ")", ...	28.375	15.375
def pages(request, path=None, instance=None): """ Представление для отображения текстовых страниц :param request: запрос :param path: адрес :param instance: страница :return: """ if instance and instance.active: p = instance else: raise Http404() return render(r...	[ "def", "pages", "(", "request", ",", "path", "=", "None", ",", "instance", "=", "None", ")", ":", "if", "instance", "and", "instance", ".", "active", ":", "p", "=", "instance", "else", ":", "raise", "Http404", "(", ")", "return", "render", "(", "requ...	23.333333	17.466667
async def _read(self, path, *, raw=None, recurse=None, dc=None, separator=None, keys=None, watch=None, consistency=None): """Returns the specified key Parameters: ...	[ "async", "def", "_read", "(", "self", ",", "path", ",", "*", ",", "raw", "=", "None", ",", "recurse", "=", "None", ",", "dc", "=", "None", ",", "separator", "=", "None", ",", "keys", "=", "None", ",", "watch", "=", "None", ",", "consistency", "="...	31.571429	12.035714
def coreBurkAlpha(self, R, Rs, rho0, r_core, ax_x, ax_y): """ deflection angle :param R: :param Rs: :param rho0: :param r_core: :param ax_x: :param ax_y: :return: """ x = R * Rs ** -1 p = Rs * r_core ** -1 gx = sel...	[ "def", "coreBurkAlpha", "(", "self", ",", "R", ",", "Rs", ",", "rho0", ",", "r_core", ",", "ax_x", ",", "ax_y", ")", ":", "x", "=", "R", "", "Rs", "", "-", "1", "p", "=", "Rs", "", "r_core", "**", "-", "1", "gx", "=", "self", ".", "_G",...	19.75	19.15
async def lookup(client: Client, search: str) -> dict: """ GET UID/Public key data :param client: Client to connect to the api :param search: UID or public key :return: """ return await client.get(MODULE + '/lookup/%s' % search, schema=LOOKUP_SCHEMA)	[ "async", "def", "lookup", "(", "client", ":", "Client", ",", "search", ":", "str", ")", "->", "dict", ":", "return", "await", "client", ".", "get", "(", "MODULE", "+", "'/lookup/%s'", "%", "search", ",", "schema", "=", "LOOKUP_SCHEMA", ")" ]	30.111111	16.333333
def delete_course(self, courseid): """ Erase all course data """ # Wipes the course (delete database) self.wipe_course(courseid) # Deletes the course from the factory (entire folder) self.course_factory.delete_course(courseid) # Removes backup filepath = os.path...	[ "def", "delete_course", "(", "self", ",", "courseid", ")", ":", "# Wipes the course (delete database)", "self", ".", "wipe_course", "(", "courseid", ")", "# Deletes the course from the factory (entire folder)", "self", ".", "course_factory", ".", "delete_course", "(", "co...	37.333333	18.2
def parse_document(graph: BELGraph, enumerated_lines: Iterable[Tuple[int, str]], metadata_parser: MetadataParser, ) -> None: """Parse the lines in the document section of a BEL script.""" parse_document_start_time = time.time() for line_number, line ...	[ "def", "parse_document", "(", "graph", ":", "BELGraph", ",", "enumerated_lines", ":", "Iterable", "[", "Tuple", "[", "int", ",", "str", "]", "]", ",", "metadata_parser", ":", "MetadataParser", ",", ")", "->", "None", ":", "parse_document_start_time", "=", "t...	41.65625	19.21875
def preprovision_rbridge_id_wwn(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") preprovision = ET.SubElement(config, "preprovision", xmlns="urn:brocade.com:mgmt:brocade-preprovision") rbridge_id = ET.SubElement(preprovision, "rbridge-id") rbridge...	[ "def", "preprovision_rbridge_id_wwn", "(", "self", ",", "", "", "kwargs", ")", ":", "config", "=", "ET", ".", "Element", "(", "\"config\"", ")", "preprovision", "=", "ET", ".", "SubElement", "(", "config", ",", "\"preprovision\"", ",", "xmlns", "=", "\"u...	45.153846	16.769231
def mcmc(x1, x2, x1err=[], x2err=[], po=(1,1,0.5), logify=True, nsteps=5000, nwalkers=100, nburn=500, output='full'): """ Use emcee to find the best-fit linear relation or power law accounting for measurement uncertainties and intrinsic scatter Parameters ---------- x1 : array...	[ "def", "mcmc", "(", "x1", ",", "x2", ",", "x1err", "=", "[", "]", ",", "x2err", "=", "[", "]", ",", "po", "=", "(", "1", ",", "1", ",", "0.5", ")", ",", "logify", "=", "True", ",", "nsteps", "=", "5000", ",", "nwalkers", "=", "100", ",", ...	38.574713	17.701149
def get_table_description(self, cursor, table_name): "Returns a description of the table, with the DB-API cursor.description interface." # pylint:disable=too-many-locals,unused-argument result = [] for field in self.table_description_cache(table_name)['fields']: params = Orde...	[ "def", "get_table_description", "(", "self", ",", "cursor", ",", "table_name", ")", ":", "# pylint:disable=too-many-locals,unused-argument", "result", "=", "[", "]", "for", "field", "in", "self", ".", "table_description_cache", "(", "table_name", ")", "[", "'fields'...	58.627907	23.139535
def fit2dArrayToFn(arr, fn, mask=None, down_scale_factor=None, output_shape=None, guess=None, outgrid=None): """Fit a 2d array to a 2d function USE ONLY MASKED VALUES * [down_scale_factor] map to speed up fitting procedure, set value smaller than 1 * [output_s...	[ "def", "fit2dArrayToFn", "(", "arr", ",", "fn", ",", "mask", "=", "None", ",", "down_scale_factor", "=", "None", ",", "output_shape", "=", "None", ",", "guess", "=", "None", ",", "outgrid", "=", "None", ")", ":", "if", "mask", "is", "None", ":", "#as...	29.980769	18.615385
async def worker_start(self, worker, exc=None): '''Start the worker by invoking the :meth:`create_server` method. ''' if not exc and self.name not in worker.servers: servers = await self.binds(worker, worker.sockets) for server in servers.values(): server....	[ "async", "def", "worker_start", "(", "self", ",", "worker", ",", "exc", "=", "None", ")", ":", "if", "not", "exc", "and", "self", ".", "name", "not", "in", "worker", ".", "servers", ":", "servers", "=", "await", "self", ".", "binds", "(", "worker", ...	51.857143	20.142857
def copy(self, dest, src): """Copy element from sequence, member from mapping. :param dest: the destination :type dest: Pointer :param src: the source :type src: Pointer :return: resolved document :rtype: Target """ doc = fragment = deepcopy(self....	[ "def", "copy", "(", "self", ",", "dest", ",", "src", ")", ":", "doc", "=", "fragment", "=", "deepcopy", "(", "self", ".", "document", ")", "for", "token", "in", "Pointer", "(", "src", ")", ":", "fragment", "=", "token", ".", "extract", "(", "fragme...	30.8	13.466667
def get_notables(self, id_num): """Return the notables of the activity with the given id. """ url = self._build_url('my', 'activities', id_num, 'notables') return self._json(url)	[ "def", "get_notables", "(", "self", ",", "id_num", ")", ":", "url", "=", "self", ".", "_build_url", "(", "'my'", ",", "'activities'", ",", "id_num", ",", "'notables'", ")", "return", "self", ".", "_json", "(", "url", ")" ]	41.2	9.6
def dispatch(self, block = False, timeout = None): """Get the next event from the queue and pass it to the appropriate handlers. :Parameters: - `block`: wait for event if the queue is empty - `timeout`: maximum time, in seconds, to wait if `block` is `True` :Type...	[ "def", "dispatch", "(", "self", ",", "block", "=", "False", ",", "timeout", "=", "None", ")", ":", "logger", ".", "debug", "(", "\" dispatching...\"", ")", "try", ":", "event", "=", "self", ".", "queue", ".", "get", "(", "block", ",", "timeout", ")",...	38.1	14.45
def _upgradeTableOid(store, table, createTable, postCreate=lambda: None): """ Upgrade a table to have an explicit oid. Must be called in a transaction to avoid corrupting the database. """ if _hasExplicitOid(store, table): return store.executeSchemaSQL( 'ALTER TABLE DATABASE.{...	[ "def", "_upgradeTableOid", "(", "store", ",", "table", ",", "createTable", ",", "postCreate", "=", "lambda", ":", "None", ")", ":", "if", "_hasExplicitOid", "(", "store", ",", "table", ")", ":", "return", "store", ".", "executeSchemaSQL", "(", "'ALTER TABLE ...	36.375	18.625
def chart(symbol, timeframe='1m', date=None, token='', version=''): '''Historical price/volume data, daily and intraday https://iexcloud.io/docs/api/#historical-prices Data Schedule 1d: -9:30-4pm ET Mon-Fri on regular market trading days -9:30-1pm ET on early close trading days All others: ...	[ "def", "chart", "(", "symbol", ",", "timeframe", "=", "'1m'", ",", "date", "=", "None", ",", "token", "=", "''", ",", "version", "=", "''", ")", ":", "_raiseIfNotStr", "(", "symbol", ")", "if", "timeframe", "is", "not", "None", "and", "timeframe", "!...	38.655172	21.965517
def _maketicks(self, ax, ylabel='Energy (eV)'): """Utility method to add tick marks to a band structure.""" # set y-ticks ax.yaxis.set_major_locator(MaxNLocator(6)) ax.yaxis.set_minor_locator(AutoMinorLocator(2)) # set x-ticks; only plot the unique tick labels ticks = se...	[ "def", "_maketicks", "(", "self", ",", "ax", ",", "ylabel", "=", "'Energy (eV)'", ")", ":", "# set y-ticks", "ax", ".", "yaxis", ".", "set_major_locator", "(", "MaxNLocator", "(", "6", ")", ")", "ax", ".", "yaxis", ".", "set_minor_locator", "(", "AutoMinor...	43.615385	16.480769
def list_of_installed(self, repo, name): """Return installed packages """ all_installed_names = [] all_installed_packages = find_package("", self.meta.pkg_path) for inst in all_installed_packages: if repo == "sbo" and inst.endswith("_SBo"): name = spli...	[ "def", "list_of_installed", "(", "self", ",", "repo", ",", "name", ")", ":", "all_installed_names", "=", "[", "]", "all_installed_packages", "=", "find_package", "(", "\"\"", ",", "self", ".", "meta", ".", "pkg_path", ")", "for", "inst", "in", "all_installed...	39.8	11.6
def download(url): """ Download `url` and return it as utf-8 encoded text. Args: url (str): What should be downloaded? Returns: str: Content of the page. """ headers = {"User-Agent": USER_AGENT} resp = requests.get( url, timeout=REQUEST_TIMEOUT, head...	[ "def", "download", "(", "url", ")", ":", "headers", "=", "{", "\"User-Agent\"", ":", "USER_AGENT", "}", "resp", "=", "requests", ".", "get", "(", "url", ",", "timeout", "=", "REQUEST_TIMEOUT", ",", "headers", "=", "headers", ",", "allow_redirects", "=", ...	25.567568	19.351351
def add_time_event(self, time_event): """Add a TimeEvent. :type time_event: :class: `~opencensus.trace.time_event.TimeEvent` :param time_event: A TimeEvent object. """ if isinstance(time_event, time_event_module.TimeEvent): self.time_events.append(time_event) ...	[ "def", "add_time_event", "(", "self", ",", "time_event", ")", ":", "if", "isinstance", "(", "time_event", ",", "time_event_module", ".", "TimeEvent", ")", ":", "self", ".", "time_events", ".", "append", "(", "time_event", ")", "else", ":", "raise", "TypeErro...	41.727273	18.272727
def set(self, indexes=None, columns=None, values=None): """ Given indexes and columns will set a sub-set of the DataFrame to the values provided. This method will direct to the below methods based on what types are passed in for the indexes and columns. If the indexes or columns contains...	[ "def", "set", "(", "self", ",", "indexes", "=", "None", ",", "columns", "=", "None", ",", "values", "=", "None", ")", ":", "if", "(", "indexes", "is", "not", "None", ")", "and", "(", "columns", "is", "not", "None", ")", ":", "if", "isinstance", "...	60.92	33.4
def get_version_name(version_id): """ Get the name of a protocol version by the internal version ID. :param Integer version_id: Internal protocol version ID :return: Name of the version :rtype: String """ ver = registry.version_info.get(version_id) if ver: return ver.name r...	[ "def", "get_version_name", "(", "version_id", ")", ":", "ver", "=", "registry", ".", "version_info", ".", "get", "(", "version_id", ")", "if", "ver", ":", "return", "ver", ".", "name", "return", "'unknown'" ]	24.846154	18.076923
def moran_cultural(network): """Generalized cultural Moran process. At eachtime step, an individual is chosen to receive information from another individual. Nobody dies, but perhaps their ideas do. """ if not network.transmissions(): # first step, replacer is a source replacer = random.ch...	[ "def", "moran_cultural", "(", "network", ")", ":", "if", "not", "network", ".", "transmissions", "(", ")", ":", "# first step, replacer is a source", "replacer", "=", "random", ".", "choice", "(", "network", ".", "nodes", "(", "type", "=", "Source", ")", ")"...	36.736842	20.368421
def get_status(self, hosts, services): """Get the status of this host :return: "UP", "DOWN", "UNREACHABLE" or "n/a" based on host state_id or business_rule state :rtype: str """ if self.got_business_rule: mapping = { 0: "UP", 1: "DOWN"...	[ "def", "get_status", "(", "self", ",", "hosts", ",", "services", ")", ":", "if", "self", ".", "got_business_rule", ":", "mapping", "=", "{", "0", ":", "\"UP\"", ",", "1", ":", "\"DOWN\"", ",", "4", ":", "\"UNREACHABLE\"", ",", "}", "return", "mapping",...	31.133333	20.533333
def respond(self): """Process the current request. From :pep:`333`: The start_response callable must not actually transmit the response headers. Instead, it must store them for the server or gateway to transmit only after the first iteration of the appli...	[ "def", "respond", "(", "self", ")", ":", "response", "=", "self", ".", "req", ".", "server", ".", "wsgi_app", "(", "self", ".", "env", ",", "self", ".", "start_response", ")", "try", ":", "for", "chunk", "in", "filter", "(", "None", ",", "response", ...	40.913043	18.304348
def _scan_for_tokens(contents): """Scan a string for tokens and return immediate form tokens.""" # Regexes are in priority order. Changing the order may alter the # behavior of the lexer scanner = re.Scanner([ # Things inside quotes (r"(?<![^\s\(])([\"\'])(?:(?=(\\?))\2.)*?\1(?![^\s\)])"...	[ "def", "_scan_for_tokens", "(", "contents", ")", ":", "# Regexes are in priority order. Changing the order may alter the", "# behavior of the lexer", "scanner", "=", "re", ".", "Scanner", "(", "[", "# Things inside quotes", "(", "r\"(?<![^\\s\\(])([\\\"\\'])(?:(?=(\\\\?))\\2.)*?\\1...	41.616438	18.438356
def read_some(self): """Read at least one byte of cooked data unless EOF is hit. Return '' if EOF is hit. Block if no data is immediately available. """ self.process_rawq() while self.cookedq.tell() == 0 and not self.eof: self.fill_rawq() self.p...	[ "def", "read_some", "(", "self", ")", ":", "self", ".", "process_rawq", "(", ")", "while", "self", ".", "cookedq", ".", "tell", "(", ")", "==", "0", "and", "not", "self", ".", "eof", ":", "self", ".", "fill_rawq", "(", ")", "self", ".", "process_ra...	29.133333	16.2
def post(self, endpoint, json=None, params=None, **kwargs): """POST to DHIS2 :param endpoint: DHIS2 API endpoint :param json: HTTP payload :param params: HTTP parameters :return: requests.Response object """ json = kwargs['data'] if 'data' in kwargs else json ...	[ "def", "post", "(", "self", ",", "endpoint", ",", "json", "=", "None", ",", "params", "=", "None", ",", "", "", "kwargs", ")", ":", "json", "=", "kwargs", "[", "'data'", "]", "if", "'data'", "in", "kwargs", "else", "json", "return", "self", ".", ...	42.777778	9.777778
def _bundle_models(custom_models): """ Create a JavaScript bundle with selected `models`. """ exports = [] modules = [] def read_json(name): with io.open(join(bokehjs_dir, "js", name + ".json"), encoding="utf-8") as f: return json.loads(f.read()) bundles = ["bokeh", "bokeh-api"...	[ "def", "_bundle_models", "(", "custom_models", ")", ":", "exports", "=", "[", "]", "modules", "=", "[", "]", "def", "read_json", "(", "name", ")", ":", "with", "io", ".", "open", "(", "join", "(", "bokehjs_dir", ",", "\"js\"", ",", "name", "+", "\".j...	38.835165	21.318681
def rollaxis(vari, axis, start=0): """ Roll the specified axis backwards, until it lies in a given position. Args: vari (chaospy.poly.base.Poly, numpy.ndarray): Input array or polynomial. axis (int): The axis to roll backwards. The positions of the other axes do not ...	[ "def", "rollaxis", "(", "vari", ",", "axis", ",", "start", "=", "0", ")", ":", "if", "isinstance", "(", "vari", ",", "Poly", ")", ":", "core_old", "=", "vari", ".", "A", ".", "copy", "(", ")", "core_new", "=", "{", "}", "for", "key", "in", "var...	34.47619	17.428571
def _return_metadata(): """ Return JSON-formatted metadata for route attachment. Requires flask.current_app to be set, which means `with app.app_context()` """ app = current_app retdict = {"auth": app.config["AUTH"]["type"]} for fld in ["name", "repository", "version", "description", ...	[ "def", "_return_metadata", "(", ")", ":", "app", "=", "current_app", "retdict", "=", "{", "\"auth\"", ":", "app", ".", "config", "[", "\"AUTH\"", "]", "[", "\"type\"", "]", "}", "for", "fld", "in", "[", "\"name\"", ",", "\"repository\"", ",", "\"version\...	34.416667	11.416667
def lz (inlist, score): """ Returns the z-score for a given input score, given that score and the list from which that score came. Not appropriate for population calculations. Usage: lz(inlist, score) """ z = (score-mean(inlist))/samplestdev(inlist) return z	[ "def", "lz", "(", "inlist", ",", "score", ")", ":", "z", "=", "(", "score", "-", "mean", "(", "inlist", ")", ")", "/", "samplestdev", "(", "inlist", ")", "return", "z" ]	29.555556	19.333333
def fetch(self, remote='origin'): """fetch from a remote""" git(self.gitdir, "fetch", remote, _env=self.env())	[ "def", "fetch", "(", "self", ",", "remote", "=", "'origin'", ")", ":", "git", "(", "self", ".", "gitdir", ",", "\"fetch\"", ",", "remote", ",", "_env", "=", "self", ".", "env", "(", ")", ")" ]	41.333333	8.333333
def fitlin_clipped(xy,uv,verbose=False,mode='rscale',nclip=3,reject=3): """ Perform a clipped fit based on the number of iterations and rejection limit (in sigma) specified by the user. This will more closely replicate the results obtained by 'geomap' using 'maxiter' and 'reject' parameters. """...	[ "def", "fitlin_clipped", "(", "xy", ",", "uv", ",", "verbose", "=", "False", ",", "mode", "=", "'rscale'", ",", "nclip", "=", "3", ",", "reject", "=", "3", ")", ":", "fitting_funcs", "=", "{", "'rscale'", ":", "fitlin_rscale", ",", "'general'", ":", ...	37.552632	19.026316
def assoc(m, kvs): """Associate keys to values in associative data structure m. If m is None, returns a new Map with key-values kvs.""" if m is None: return lmap.Map.empty().assoc(kvs) if isinstance(m, IAssociative): return m.assoc(*kvs) raise TypeError( f"Object of type {t...	[ "def", "assoc", "(", "m", ",", "", "kvs", ")", ":", "if", "m", "is", "None", ":", "return", "lmap", ".", "Map", ".", "empty", "(", ")", ".", "assoc", "(", "", "kvs", ")", "if", "isinstance", "(", "m", ",", "IAssociative", ")", ":", "return", ...	36.6	15.5
def do_capacity(self, line): "capacity [tablename] {read_units} {write_units}" table, line = self.get_table_params(line) args = self.getargs(line) read_units = int(args[0]) write_units = int(args[1]) desc = table.describe() prov = desc['Table']['ProvisionedThrou...	[ "def", "do_capacity", "(", "self", ",", "line", ")", ":", "table", ",", "line", "=", "self", ".", "get_table_params", "(", "line", ")", "args", "=", "self", ".", "getargs", "(", "line", ")", "read_units", "=", "int", "(", "args", "[", "0", "]", ")"...	42.75	24.522727
def _do_scatter_var(v, parallel): """Logic for scattering a variable. """ # For batches, scatter records only at the top level (double nested) if parallel.startswith("batch") and workflow.is_cwl_record(v): return (tz.get_in(["type", "type"], v) == "array" and tz.get_in(["type", "...	[ "def", "_do_scatter_var", "(", "v", ",", "parallel", ")", ":", "# For batches, scatter records only at the top level (double nested)", "if", "parallel", ".", "startswith", "(", "\"batch\"", ")", "and", "workflow", ".", "is_cwl_record", "(", "v", ")", ":", "return", ...	44.2	17
def split(nodeShape, jobShape, wallTime): """ Partition a node allocation into two to fit the job, returning the modified shape of the node and a new node reservation for the extra time that the job didn't fill. """ return (Shape(wallTime, nodeShape.memory - jobShape.memory, ...	[ "def", "split", "(", "nodeShape", ",", "jobShape", ",", "wallTime", ")", ":", "return", "(", "Shape", "(", "wallTime", ",", "nodeShape", ".", "memory", "-", "jobShape", ".", "memory", ",", "nodeShape", ".", "cores", "-", "jobShape", ".", "cores", ",", ...	45.1875	10.9375
def get_relative_from_paths(self, filepath, paths): """ Find the relative filepath from the most relevant multiple paths. This is somewhat like a ``os.path.relpath(path[, start])`` but where ``start`` is a list. The most relevant item from ``paths`` will be used to apply the rel...	[ "def", "get_relative_from_paths", "(", "self", ",", "filepath", ",", "paths", ")", ":", "for", "systempath", "in", "paths_by_depth", "(", "paths", ")", ":", "if", "filepath", ".", "startswith", "(", "systempath", ")", ":", "return", "os", ".", "path", ".",...	41.413793	26.034483
def request(self, session_id): """Force the termination of a NETCONF session (not the current one!) session_id is the session identifier of the NETCONF session to be terminated as a string """ node = new_ele("kill-session") sub_ele(node, "session-id").text = session_id ...	[ "def", "request", "(", "self", ",", "session_id", ")", ":", "node", "=", "new_ele", "(", "\"kill-session\"", ")", "sub_ele", "(", "node", ",", "\"session-id\"", ")", ".", "text", "=", "session_id", "return", "self", ".", "_request", "(", "node", ")" ]	42.5	16.125
def add_to_deleted_models(sender, instance=None, args, *kwargs): """ Whenever a model is deleted, we record its ID in a separate model for tracking purposes. During serialization, we will mark the model as deleted in the store. """ if issubclass(sender, SyncableModel): instance._update_del...	[ "def", "add_to_deleted_models", "(", "sender", ",", "instance", "=", "None", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "if", "issubclass", "(", "sender", ",", "SyncableModel", ")", ":", "instance", ".", "_update_deleted_models", "(", ")" ]	46.714286	16.714286
def file_attribs(location, mode=None, owner=None, group=None, sudo=False): """Updates the mode/owner/group for the remote file at the given location.""" return dir_attribs(location, mode, owner, group, False, sudo)	[ "def", "file_attribs", "(", "location", ",", "mode", "=", "None", ",", "owner", "=", "None", ",", "group", "=", "None", ",", "sudo", "=", "False", ")", ":", "return", "dir_attribs", "(", "location", ",", "mode", ",", "owner", ",", "group", ",", "Fals...	55.75	14.75
def _get_children_as_string(node): """Iterate through all the children of a node. Returns one string containing the values from all the text-nodes recursively. """ out = [] if node: for child in node: if child.nodeType == child.TEXT_NODE: out.append(child.dat...	[ "def", "_get_children_as_string", "(", "node", ")", ":", "out", "=", "[", "]", "if", "node", ":", "for", "child", "in", "node", ":", "if", "child", ".", "nodeType", "==", "child", ".", "TEXT_NODE", ":", "out", ".", "append", "(", "child", ".", "data"...	30.071429	17.714286
def verify_ethinca_metric_options(opts, parser): """ Checks that the necessary options are given for the ethinca metric calculation. Parameters ---------- opts : argparse.Values instance Result of parsing the input options with OptionParser parser : object The OptionParser i...	[ "def", "verify_ethinca_metric_options", "(", "opts", ",", "parser", ")", ":", "if", "opts", ".", "filter_cutoff", "is", "not", "None", "and", "not", "(", "opts", ".", "filter_cutoff", "in", "pnutils", ".", "named_frequency_cutoffs", ".", "keys", "(", ")", ")...	46.68	21.8
def log(self, sequence, infoarray) -> None: """Log the given \|IOSequence\| object either for reading or writing data. The optional `array` argument allows for passing alternative data in an \|InfoArray\| object replacing the series of the \|IOSequence\| object, which is useful for wr...	[ "def", "log", "(", "self", ",", "sequence", ",", "infoarray", ")", "->", "None", ":", "descr_device", "=", "sequence", ".", "descr_device", "self", ".", "sequences", "[", "descr_device", "]", "=", "sequence", "self", ".", "arrays", "[", "descr_device", "]"...	41.571429	18.057143
def search_function(root1, q, s, f, l, o='g'): """ function to get links """ global links links = search(q, o, s, f, l) root1.destroy() root1.quit()	[ "def", "search_function", "(", "root1", ",", "q", ",", "s", ",", "f", ",", "l", ",", "o", "=", "'g'", ")", ":", "global", "links", "links", "=", "search", "(", "q", ",", "o", ",", "s", ",", "f", ",", "l", ")", "root1", ".", "destroy", "(", ...	18.5	14
def options_absent(name, sections=None, separator='='): ''' .. code-block:: yaml /home/saltminion/api-paste.ini: ini.options_absent: - separator: '=' - sections: test: - testkey - secondoption test1: ...	[ "def", "options_absent", "(", "name", ",", "sections", "=", "None", ",", "separator", "=", "'='", ")", ":", "ret", "=", "{", "'name'", ":", "name", ",", "'changes'", ":", "{", "}", ",", "'result'", ":", "True", ",", "'comment'", ":", "'No anomaly detec...	37.453333	17.906667
def vmomentdensity(self,args,*kwargs): """ NAME: vmomentdensity PURPOSE: calculate the an arbitrary moment of the velocity distribution at R times the density INPUT: R - radius at which to calculate the moment(/ro) n - vR^n ...	[ "def", "vmomentdensity", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "use_physical", "=", "kwargs", ".", "pop", "(", "'use_physical'", ",", "True", ")", "ro", "=", "kwargs", ".", "pop", "(", "'ro'", ",", "None", ")", "if", "ro...	29.985714	26.3
def get_type(type_name): """Get a type given its importable name. Parameters ---------- task_name : `str` Name of the Python type, such as ``mypackage.MyClass``. Returns ------- object The object. """ parts = type_name.split('.') if len(parts) < 2: raise...	[ "def", "get_type", "(", "type_name", ")", ":", "parts", "=", "type_name", ".", "split", "(", "'.'", ")", "if", "len", "(", "parts", ")", "<", "2", ":", "raise", "SphinxError", "(", "'Type must be fully-qualified, '", "'of the form ``module.MyClass``. Got: {}'", ...	25.136364	19.909091
def check_precomputed_distance_matrix(X): """Perform check_array(X) after removing infinite values (numpy.inf) from the given distance matrix. """ tmp = X.copy() tmp[np.isinf(tmp)] = 1 check_array(tmp)	[ "def", "check_precomputed_distance_matrix", "(", "X", ")", ":", "tmp", "=", "X", ".", "copy", "(", ")", "tmp", "[", "np", ".", "isinf", "(", "tmp", ")", "]", "=", "1", "check_array", "(", "tmp", ")" ]	36	9.5
def add_child(self, child, logical_block_size, allow_duplicate=False): # type: (DirectoryRecord, int, bool) -> bool ''' A method to add a new child to this directory record. Parameters: child - The child directory record object to add. logical_block_size - The size of ...	[ "def", "add_child", "(", "self", ",", "child", ",", "logical_block_size", ",", "allow_duplicate", "=", "False", ")", ":", "# type: (DirectoryRecord, int, bool) -> bool", "if", "not", "self", ".", "_initialized", ":", "raise", "pycdlibexception", ".", "PyCdlibInternalE...	47.333333	29.222222
def find_instance_and_eni_by_ip(vpc_info, ip): """ Given a specific IP address, find the EC2 instance and ENI. We need this information for setting the route. Returns instance and emi in a tuple. """ for instance in vpc_info['instances']: for eni in instance.interfaces: fo...	[ "def", "find_instance_and_eni_by_ip", "(", "vpc_info", ",", "ip", ")", ":", "for", "instance", "in", "vpc_info", "[", "'instances'", "]", ":", "for", "eni", "in", "instance", ".", "interfaces", ":", "for", "pa", "in", "eni", ".", "private_ip_addresses", ":",...	35.25	14.5
def building(shape=None, gray=False): """Photo of the Centre for Mathematical Sciences in Cambridge. Returns ------- An image with the following properties: image type: color (or gray scales if `gray=True`) size: [442, 331] (if not specified by `size`) scale: [0, 1] type...	[ "def", "building", "(", "shape", "=", "None", ",", "gray", "=", "False", ")", ":", "# TODO: Store data in some ODL controlled url", "name", "=", "'cms.mat'", "url", "=", "URL_CAM", "+", "name", "dct", "=", "get_data", "(", "name", ",", "subset", "=", "DATA_S...	30.333333	15.388889
def get_next_step(self, step=None): """ Returns the next step after the given `step`. If no more steps are available, None will be returned. If the `step` argument is None, the current step will be determined automatically. """ if step is None: step = self.ste...	[ "def", "get_next_step", "(", "self", ",", "step", "=", "None", ")", ":", "if", "step", "is", "None", ":", "step", "=", "self", ".", "steps", ".", "current", "form_list", "=", "self", ".", "get_form_list", "(", ")", "keys", "=", "list", "(", "form_lis...	37.866667	10.533333
def bed(args): """ %prog bed frgscffile Convert the frgscf posmap file to bed format. """ p = OptionParser(bed.__doc__) opts, args = p.parse_args(args) if len(args) != 1: sys.exit(not p.print_help()) frgscffile, = args bedfile = frgscffile.rsplit(".", 1)[0] + ".bed" fw...	[ "def", "bed", "(", "args", ")", ":", "p", "=", "OptionParser", "(", "bed", ".", "__doc__", ")", "opts", ",", "args", "=", "p", ".", "parse_args", "(", "args", ")", "if", "len", "(", "args", ")", "!=", "1", ":", "sys", ".", "exit", "(", "not", ...	21.125	19.375
def get_pages(parser, token): """Add to context the list of page links. Usage: .. code-block:: html+django {% get_pages %} This is mostly used for Digg-style pagination. This call inserts in the template context a pages variable, as a sequence of page links. You can use pages in ...	[ "def", "get_pages", "(", "parser", ",", "token", ")", ":", "# Validate args.", "try", ":", "tag_name", ",", "args", "=", "token", ".", "contents", ".", "split", "(", "None", ",", "1", ")", "except", "ValueError", ":", "var_name", "=", "'pages'", "else", ...	24.95122	22.170732
def is_complex(arg): ''' is_complex(x) yields True if x is a complex numeric object and False otherwise. Note that this includes anything representable as as a complex number such as an integer or a boolean value. In effect, this makes this function an alias for is_number(arg). ''' return (i...	[ "def", "is_complex", "(", "arg", ")", ":", "return", "(", "is_complex", "(", "mag", "(", "arg", ")", ")", "if", "is_quantity", "(", "arg", ")", "else", "True", "if", "isinstance", "(", "arg", ",", "numbers", ".", "Complex", ")", "else", "is_npscalar", ...	57.444444	36.555556
def get_all_child_edges(self): """Return tuples for all child GO IDs, containing current GO ID and child GO ID.""" all_child_edges = set() for parent in self.children: all_child_edges.add((parent.item_id, self.item_id)) all_child_edges \|= parent.get_all_child_edges() ...	[ "def", "get_all_child_edges", "(", "self", ")", ":", "all_child_edges", "=", "set", "(", ")", "for", "parent", "in", "self", ".", "children", ":", "all_child_edges", ".", "add", "(", "(", "parent", ".", "item_id", ",", "self", ".", "item_id", ")", ")", ...	48.571429	10.714286
def select_candidates(config): """Select candidates to download. Parameters ---------- config: NgdConfig Runtime configuration object Returns ------- list of (<candidate entry>, <taxonomic group>) """ download_candidates = [] for group in config.group: summary...	[ "def", "select_candidates", "(", "config", ")", ":", "download_candidates", "=", "[", "]", "for", "group", "in", "config", ".", "group", ":", "summary_file", "=", "get_summary", "(", "config", ".", "section", ",", "group", ",", "config", ".", "uri", ",", ...	24.26087	21.913043
def parse_filespec(fspec, sep=':', gpat='*'): """ Parse given filespec `fspec` and return [(filetype, filepath)]. Because anyconfig.load should find correct file's type to load by the file extension, this function will not try guessing file's type if not file type is specified explicitly. :par...	[ "def", "parse_filespec", "(", "fspec", ",", "sep", "=", "':'", ",", "gpat", "=", "'*'", ")", ":", "if", "sep", "in", "fspec", ":", "tpl", "=", "(", "ftype", ",", "fpath", ")", "=", "tuple", "(", "fspec", ".", "split", "(", "sep", ")", ")", "els...	34.375	17.8125
def run(self): """ Run the given command and yield each line(s) one by one. .. note:: The difference between this method and :code:`self.execute()` is that :code:`self.execute()` wait for the process to end in order to return its output. """ ...	[ "def", "run", "(", "self", ")", ":", "with", "Popen", "(", "self", ".", "command", ",", "stdout", "=", "PIPE", ",", "shell", "=", "True", ")", "as", "process", ":", "# We initiate a process and parse the command to it.", "while", "True", ":", "# We loop infini...	34.78125	23.46875
def get_page_by_id_text(self, project, wiki_identifier, id, recursion_level=None, include_content=None, **kwargs): """GetPageByIdText. [Preview API] Gets metadata or content of the wiki page for the provided page id. Content negotiation is done based on the `Accept` header sent in the request. :...	[ "def", "get_page_by_id_text", "(", "self", ",", "project", ",", "wiki_identifier", ",", "id", ",", "recursion_level", "=", "None", ",", "include_content", "=", "None", ",", "", "", "kwargs", ")", ":", "route_values", "=", "{", "}", "if", "project", "is",...	60.515152	29.181818
def start_drag(self, sprite, cursor_x = None, cursor_y = None): """start dragging given sprite""" cursor_x, cursor_y = cursor_x or sprite.x, cursor_y or sprite.y self._mouse_down_sprite = self._drag_sprite = sprite sprite.drag_x, sprite.drag_y = self._drag_sprite.x, self._drag_sprite.y ...	[ "def", "start_drag", "(", "self", ",", "sprite", ",", "cursor_x", "=", "None", ",", "cursor_y", "=", "None", ")", ":", "cursor_x", ",", "cursor_y", "=", "cursor_x", "or", "sprite", ".", "x", ",", "cursor_y", "or", "sprite", ".", "y", "self", ".", "_m...	52.125	23.5
def _ensure_update_ha_compliant(self, router, current_router, r_hd_binding_db): """To be called in update_router() BEFORE router has been updated in DB. """ if r_hd_binding_db.role == ROUTER_ROLE_HA_REDUNDANCY: return {ha.ENABLED: False} ...	[ "def", "_ensure_update_ha_compliant", "(", "self", ",", "router", ",", "current_router", ",", "r_hd_binding_db", ")", ":", "if", "r_hd_binding_db", ".", "role", "==", "ROUTER_ROLE_HA_REDUNDANCY", ":", "return", "{", "ha", ".", "ENABLED", ":", "False", "}", "auto...	52.108108	17.945946
def _lastRecursiveChild(self): "Finds the last element beneath this object to be parsed." lastChild = self while hasattr(lastChild, 'contents') and lastChild.contents: lastChild = lastChild.contents[-1] return lastChild	[ "def", "_lastRecursiveChild", "(", "self", ")", ":", "lastChild", "=", "self", "while", "hasattr", "(", "lastChild", ",", "'contents'", ")", "and", "lastChild", ".", "contents", ":", "lastChild", "=", "lastChild", ".", "contents", "[", "-", "1", "]", "retu...	43	17
def _decode(self): """ Convert the characters of character in value of component to standard value (WFN value). This function scans the value of component and returns a copy with all percent-encoded characters decoded. :exception: ValueError - invalid character in value ...	[ "def", "_decode", "(", "self", ")", ":", "result", "=", "[", "]", "idx", "=", "0", "s", "=", "self", ".", "_encoded_value", "embedded", "=", "False", "errmsg", "=", "[", "]", "errmsg", ".", "append", "(", "\"Invalid value: \"", ")", "while", "(", "id...	37.085366	21.817073
def run(self, options, args): """Prints the completion code of the given shell""" shells = COMPLETION_SCRIPTS.keys() shell_options = ['--' + shell for shell in sorted(shells)] if options.shell in shells: script = COMPLETION_SCRIPTS.get(options.shell, '') print(BAS...	[ "def", "run", "(", "self", ",", "options", ",", "args", ")", ":", "shells", "=", "COMPLETION_SCRIPTS", ".", "keys", "(", ")", "shell_options", "=", "[", "'--'", "+", "shell", "for", "shell", "in", "sorted", "(", "shells", ")", "]", "if", "options", "...	45.363636	18.363636
def folderitems(self): """TODO: Refactor to non-classic mode """ items = super(AnalysisSpecificationView, self).folderitems() self.categories.sort() return items	[ "def", "folderitems", "(", "self", ")", ":", "items", "=", "super", "(", "AnalysisSpecificationView", ",", "self", ")", ".", "folderitems", "(", ")", "self", ".", "categories", ".", "sort", "(", ")", "return", "items" ]	32.666667	12.666667
def _make_2d_array(self, data): """ Convert a 1D array of mesh values to a masked 2D mesh array given the 1D mesh indices ``mesh_idx``. Parameters ---------- data : 1D `~numpy.ndarray` A 1D array of mesh values. Returns ------- result...	[ "def", "_make_2d_array", "(", "self", ",", "data", ")", ":", "if", "data", ".", "shape", "!=", "self", ".", "mesh_idx", ".", "shape", ":", "raise", "ValueError", "(", "'data and mesh_idx must have the same shape'", ")", "if", "np", ".", "ma", ".", "is_masked...	31.314286	19.771429
def _join_paragraphs(cls, lines, use_indent=False, leading_blanks=False, trailing_blanks=False): """Join adjacent lines together into paragraphs using either a blank line or indent as separator.""" curr_para = [] paragraphs = [] for line in lines: if use_indent: ...	[ "def", "_join_paragraphs", "(", "cls", ",", "lines", ",", "use_indent", "=", "False", ",", "leading_blanks", "=", "False", ",", "trailing_blanks", "=", "False", ")", ":", "curr_para", "=", "[", "]", "paragraphs", "=", "[", "]", "for", "line", "in", "line...	38.2	22.133333
def pre_encrypt_assertion(response): """ Move the assertion to within a encrypted_assertion :param response: The response with one assertion :return: The response but now with the assertion within an encrypted_assertion. """ assertion = response.assertion response.assertion = None ...	[ "def", "pre_encrypt_assertion", "(", "response", ")", ":", "assertion", "=", "response", ".", "assertion", "response", ".", "assertion", "=", "None", "response", ".", "encrypted_assertion", "=", "EncryptedAssertion", "(", ")", "if", "assertion", "is", "not", "No...	38.1875	13.9375
def resolve_variables(self, task): """ Resolve task variables based on input variables and the default values. Raises ------ LookupError If a variable is missing. """ variables = {task.variables, self.project.variables} values = ...	[ "def", "resolve_variables", "(", "self", ",", "task", ")", ":", "variables", "=", "{", "", "", "task", ".", "variables", ",", "", "", "self", ".", "project", ".", "variables", "}", "values", "=", "{", "}", "for", "variable", "in", "variables", "....	25.409091	20.590909
def word_ngrams(s, n=3, token_fn=tokens.on_whitespace): """ Word-level n-grams in a string By default, whitespace is assumed to be a word boundary. >>> ng.word_ngrams('This is not a test!') [('This', 'is', 'not'), ('is', 'not', 'a'), ('not', 'a', 'test!')] If the sequence'...	[ "def", "word_ngrams", "(", "s", ",", "n", "=", "3", ",", "token_fn", "=", "tokens", ".", "on_whitespace", ")", ":", "tokens", "=", "token_fn", "(", "s", ")", "return", "__ngrams", "(", "tokens", ",", "n", "=", "min", "(", "len", "(", "tokens", ")",...	27.434783	21.347826
def get_similar_users(self, users=None, k=10): """Get the k most similar users for each entry in `users`. Each type of recommender has its own model for the similarity between users. For example, the factorization_recommender will return the nearest users based on the cosine similarity ...	[ "def", "get_similar_users", "(", "self", ",", "users", "=", "None", ",", "k", "=", "10", ")", ":", "if", "users", "is", "None", ":", "get_all_users", "=", "True", "users", "=", "_SArray", "(", ")", "else", ":", "get_all_users", "=", "False", "if", "i...	38.359375	24.15625
def get_object_by_name(self, name): """Find an object :param name: Name of object. Case-sensitive. :rtype: Object if found, otherwise ValueError """ for obj in self.objects: if obj.name == name: return obj raise ValueError	[ "def", "get_object_by_name", "(", "self", ",", "name", ")", ":", "for", "obj", "in", "self", ".", "objects", ":", "if", "obj", ".", "name", "==", "name", ":", "return", "obj", "raise", "ValueError" ]	29.1	11.7
def logItems(self, level=logging.DEBUG): """ rootItem """ rootItem = self.rootItem() if rootItem is None: logger.debug("No items in: {}".format(self)) else: rootItem.logBranch(level=level)	[ "def", "logItems", "(", "self", ",", "level", "=", "logging", ".", "DEBUG", ")", ":", "rootItem", "=", "self", ".", "rootItem", "(", ")", "if", "rootItem", "is", "None", ":", "logger", ".", "debug", "(", "\"No items in: {}\"", ".", "format", "(", "self...	30.625	8
def backbone_bond_angles(self): """Dictionary containing backbone bond angles as lists of floats. Returns ------- bond_angles : dict Keys are `n_ca_c`, `ca_c_o`, `ca_c_n` and `c_n_ca`, referring to the N-CA-C, CA-C=O, CA-C-N and C-N-CA angles respectively. ...	[ "def", "backbone_bond_angles", "(", "self", ")", ":", "bond_angles", "=", "dict", "(", "n_ca_c", "=", "[", "angle_between_vectors", "(", "r", "[", "'N'", "]", "-", "r", "[", "'CA'", "]", ",", "r", "[", "'C'", "]", "-", "r", "[", "'CA'", "]", ")", ...	54.115385	27.115385
def get_self_ip(): """获取本机公网ip地址""" TEST_IP = 'http://httpbin.org/ip' html = requests.get(TEST_IP) ip = json.loads(html.text)['origin'] return ip	[ "def", "get_self_ip", "(", ")", ":", "TEST_IP", "=", "'http://httpbin.org/ip'", "html", "=", "requests", ".", "get", "(", "TEST_IP", ")", "ip", "=", "json", ".", "loads", "(", "html", ".", "text", ")", "[", "'origin'", "]", "return", "ip" ]	26.666667	10
def char_beam_search(out): """ Description : apply beam search for prediction result """ out_conv = list() for idx in range(out.shape[0]): probs = out[idx] prob = probs.softmax().asnumpy() line_string_proposals = ctcBeamSearch(prob, ALPHABET, None, k=4, beamWidth=25) ...	[ "def", "char_beam_search", "(", "out", ")", ":", "out_conv", "=", "list", "(", ")", "for", "idx", "in", "range", "(", "out", ".", "shape", "[", "0", "]", ")", ":", "probs", "=", "out", "[", "idx", "]", "prob", "=", "probs", ".", "softmax", "(", ...	33.727273	13.363636
def get_leapdays(init_date, final_date): """ Find the number of leap days between arbitrary dates. Returns a timedelta object. FIXME: calculate this instead of iterating. """ curr_date = init_date leap_days = 0 while curr_date != final_date: if curr_date.month == 2 and curr_d...	[ "def", "get_leapdays", "(", "init_date", ",", "final_date", ")", ":", "curr_date", "=", "init_date", "leap_days", "=", "0", "while", "curr_date", "!=", "final_date", ":", "if", "curr_date", ".", "month", "==", "2", "and", "curr_date", ".", "day", "==", "29...	23.105263	19.947368
def output_to_terminal(sources): """Print statistics to the terminal""" results = OrderedDict() for source in sources: if source.get_is_available(): source.update() results.update(source.get_summary()) for key, value in results.items(): sys.stdout.write(str(key) +...	[ "def", "output_to_terminal", "(", "sources", ")", ":", "results", "=", "OrderedDict", "(", ")", "for", "source", "in", "sources", ":", "if", "source", ".", "get_is_available", "(", ")", ":", "source", ".", "update", "(", ")", "results", ".", "update", "(...	34.363636	11.090909
def like(self): """ Like a clip. """ r = requests.post( "https://kippt.com/api/clips/%s/likes" % (self.id), headers=self.kippt.header ) return (r.json())	[ "def", "like", "(", "self", ")", ":", "r", "=", "requests", ".", "post", "(", "\"https://kippt.com/api/clips/%s/likes\"", "%", "(", "self", ".", "id", ")", ",", "headers", "=", "self", ".", "kippt", ".", "header", ")", "return", "(", "r", ".", "json", ...	23.333333	16.777778
def get_species(taxdump_file, select_divisions=None, exclude_divisions=None, nrows=None): """Get a dataframe with species information.""" if select_divisions and exclude_divisions: raise ValueError('Cannot specify "select_divisions" and ' '"exclude_divisions...	[ "def", "get_species", "(", "taxdump_file", ",", "select_divisions", "=", "None", ",", "exclude_divisions", "=", "None", ",", "nrows", "=", "None", ")", ":", "if", "select_divisions", "and", "exclude_divisions", ":", "raise", "ValueError", "(", "'Cannot specify \"s...	37.88	17.06
def load(self, name): """ If not yet in the cache, load the named template and compiles it, placing it into the cache. If in cache, return the cached template. """ if self.reload: self._maybe_purge_cache() template = self.cache.get(name) if ...	[ "def", "load", "(", "self", ",", "name", ")", ":", "if", "self", ".", "reload", ":", "self", ".", "_maybe_purge_cache", "(", ")", "template", "=", "self", ".", "cache", ".", "get", "(", "name", ")", "if", "template", ":", "return", "template", "path"...	26.896552	19.172414
def empty_platform(cls, arch): """ Create a platform without an ELF loaded. :param str arch: The architecture of the new platform :rtype: Linux """ platform = cls(None) platform._init_cpu(arch) platform._init_std_fds() return platform	[ "def", "empty_platform", "(", "cls", ",", "arch", ")", ":", "platform", "=", "cls", "(", "None", ")", "platform", ".", "_init_cpu", "(", "arch", ")", "platform", ".", "_init_std_fds", "(", ")", "return", "platform" ]	27	13
def user_feature_update(self, userid, payload): ''' update features by user id ''' response, status_code = self.__pod__.User.post_v1_admin_user_uid_features_update( sessionToken=self.__session__, uid=userid, payload=payload ).result() self.logger.debug...	[ "def", "user_feature_update", "(", "self", ",", "userid", ",", "payload", ")", ":", "response", ",", "status_code", "=", "self", ".", "__pod__", ".", "User", ".", "post_v1_admin_user_uid_features_update", "(", "sessionToken", "=", "self", ".", "__session__", ","...	42.777778	15.222222
def options(self, parser, env=os.environ): """Register commandline options.""" super(TimerPlugin, self).options(parser, env) # timer top n parser.add_option( "--timer-top-n", action="store", default="-1", dest="timer_top_n", he...	[ "def", "options", "(", "self", ",", "parser", ",", "env", "=", "os", ".", "environ", ")", ":", "super", "(", "TimerPlugin", ",", "self", ")", ".", "options", "(", "parser", ",", "env", ")", "# timer top n", "parser", ".", "add_option", "(", "\"--timer-...	30.554217	20.951807
def parse_limits_list(path, limits): """Parse a structured list of flux limits as obtained from a YAML file Yields tuples of reaction ID, lower and upper flux bounds. Path can be given as a string or a context. """ context = FilePathContext(path) for limit_def in limits: if 'include' ...	[ "def", "parse_limits_list", "(", "path", ",", "limits", ")", ":", "context", "=", "FilePathContext", "(", "path", ")", "for", "limit_def", "in", "limits", ":", "if", "'include'", "in", "limit_def", ":", "include_context", "=", "context", ".", "resolve", "(",...	33.125	17.0625
def dump(database, output, min_occurences=1, max_occurences=250, returncmd=False): """ Dumps output from kmc database into tab-delimited format. :param database: Database generated by kmc. :param output: Name for output. :param min_occurences: Minimum number of times kmer must be in database to be d...	[ "def", "dump", "(", "database", ",", "output", ",", "min_occurences", "=", "1", ",", "max_occurences", "=", "250", ",", "returncmd", "=", "False", ")", ":", "cmd", "=", "'kmc_tools dump -ci{} -cx{} {} {}'", ".", "format", "(", "min_occurences", ",", "max_occur...	49	24.125
def validate_authorization_request(self, uri, http_method='GET', body=None, headers=None): """Extract response_type and route to the designated handler.""" request = Request( uri, http_method=http_method, body=body, headers=headers) request.sco...	[ "def", "validate_authorization_request", "(", "self", ",", "uri", ",", "http_method", "=", "'GET'", ",", "body", "=", "None", ",", "headers", "=", "None", ")", ":", "request", "=", "Request", "(", "uri", ",", "http_method", "=", "http_method", ",", "body",...	50.545455	24.727273

def _forwardImplementation(self, inbuf, outbuf): """ Proportional probability method. """ assert self.module propensities = self.module.getActionValues(0) summedProps = sum(propensities) probabilities = propensities / summedProps action = eventGenerator(probabi...

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def metadata(self): """Retrieves metadata about the bucket. Returns: A BucketMetadata instance with information about this bucket. Raises: Exception if there was an error requesting the bucket's metadata. """ if self._info is None: try: self._info = self._api.buckets_get(s...

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def get_election(self, row, race): """ Gets the Election object for the given row of election results. Depends on knowing the Race object. If this is the presidential election, this will determine the Division attached to the election based on the row's statename. This ...

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def count_words(pattern): """ Count the number of words in a pattern as well as the total length of those words :param pattern: The pattern to parse :type pattern: str :return: The word count first, then the total length of all words :rtype : tuple of (int, int) ...

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def set_col_min_width(self, x: int, min_width: int): """Sets a minimum width for blocks in the column with coordinate x.""" if x < 0: raise IndexError('x < 0') self._min_widths[x] = min_width

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def mappability(args): """ %prog mappability reference.fasta Generate 50mer mappability for reference genome. Commands are based on gem mapper. See instructions: <https://github.com/xuefzhao/Reference.Mappability> """ p = OptionParser(mappability.__doc__) p.add_option("--mer", default=5...

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def tpot_driver(args): """Perform a TPOT run.""" if args.VERBOSITY >= 2: _print_args(args) input_data = _read_data_file(args) features = input_data.drop(args.TARGET_NAME, axis=1) training_features, testing_features, training_target, testing_target = \ train_test_split(features, inp...

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def get_nodes(self, coord, coords): """Get the variables containing the definition of the nodes Parameters ---------- coord: xarray.Coordinate The mesh variable coords: dict The coordinates to use to get node coordinates""" def get_coord(coord): ...

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def init(ctx): """Initialize the project for use with EasyCI. This installs the necessary git hooks (pre-commit + pre-push) and add a config file if one does not already exists. """ # install hooks git = ctx.obj['vcs'] click.echo("Installing hooks...", nl=False) for old in ['commit-msg']...

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def invalidate_cache(self): """ Invalidate httpBL cache """ if self._use_cache: self._cache_version += 1 self._cache.increment('cached_httpbl_{0}_version'.format(self._api_key))

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def pages(request, path=None, instance=None): """ Представление для отображения текстовых страниц :param request: запрос :param path: адрес :param instance: страница :return: """ if instance and instance.active: p = instance else: raise Http404() return render(r...

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async def _read(self, path, *, raw=None, recurse=None, dc=None, separator=None, keys=None, watch=None, consistency=None): """Returns the specified key Parameters: ...

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def coreBurkAlpha(self, R, Rs, rho0, r_core, ax_x, ax_y): """ deflection angle :param R: :param Rs: :param rho0: :param r_core: :param ax_x: :param ax_y: :return: """ x = R * Rs ** -1 p = Rs * r_core ** -1 gx = sel...

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async def lookup(client: Client, search: str) -> dict: """ GET UID/Public key data :param client: Client to connect to the api :param search: UID or public key :return: """ return await client.get(MODULE + '/lookup/%s' % search, schema=LOOKUP_SCHEMA)

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def delete_course(self, courseid): """ Erase all course data """ # Wipes the course (delete database) self.wipe_course(courseid) # Deletes the course from the factory (entire folder) self.course_factory.delete_course(courseid) # Removes backup filepath = os.path...

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def parse_document(graph: BELGraph, enumerated_lines: Iterable[Tuple[int, str]], metadata_parser: MetadataParser, ) -> None: """Parse the lines in the document section of a BEL script.""" parse_document_start_time = time.time() for line_number, line ...

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def preprovision_rbridge_id_wwn(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") preprovision = ET.SubElement(config, "preprovision", xmlns="urn:brocade.com:mgmt:brocade-preprovision") rbridge_id = ET.SubElement(preprovision, "rbridge-id") rbridge...

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def mcmc(x1, x2, x1err=[], x2err=[], po=(1,1,0.5), logify=True, nsteps=5000, nwalkers=100, nburn=500, output='full'): """ Use emcee to find the best-fit linear relation or power law accounting for measurement uncertainties and intrinsic scatter Parameters ---------- x1 : array...

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def get_table_description(self, cursor, table_name): "Returns a description of the table, with the DB-API cursor.description interface." # pylint:disable=too-many-locals,unused-argument result = [] for field in self.table_description_cache(table_name)['fields']: params = Orde...

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def fit2dArrayToFn(arr, fn, mask=None, down_scale_factor=None, output_shape=None, guess=None, outgrid=None): """Fit a 2d array to a 2d function USE ONLY MASKED VALUES * [down_scale_factor] map to speed up fitting procedure, set value smaller than 1 * [output_s...

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async def worker_start(self, worker, exc=None): '''Start the worker by invoking the :meth:`create_server` method. ''' if not exc and self.name not in worker.servers: servers = await self.binds(worker, worker.sockets) for server in servers.values(): server....

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def copy(self, dest, src): """Copy element from sequence, member from mapping. :param dest: the destination :type dest: Pointer :param src: the source :type src: Pointer :return: resolved document :rtype: Target """ doc = fragment = deepcopy(self....

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def get_notables(self, id_num): """Return the notables of the activity with the given id. """ url = self._build_url('my', 'activities', id_num, 'notables') return self._json(url)

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41.2

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def dispatch(self, block = False, timeout = None): """Get the next event from the queue and pass it to the appropriate handlers. :Parameters: - `block`: wait for event if the queue is empty - `timeout`: maximum time, in seconds, to wait if `block` is `True` :Type...

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def _upgradeTableOid(store, table, createTable, postCreate=lambda: None): """ Upgrade a table to have an explicit oid. Must be called in a transaction to avoid corrupting the database. """ if _hasExplicitOid(store, table): return store.executeSchemaSQL( 'ALTER TABLE *DATABASE*.{...

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def chart(symbol, timeframe='1m', date=None, token='', version=''): '''Historical price/volume data, daily and intraday https://iexcloud.io/docs/api/#historical-prices Data Schedule 1d: -9:30-4pm ET Mon-Fri on regular market trading days -9:30-1pm ET on early close trading days All others: ...

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38.655172

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def _maketicks(self, ax, ylabel='Energy (eV)'): """Utility method to add tick marks to a band structure.""" # set y-ticks ax.yaxis.set_major_locator(MaxNLocator(6)) ax.yaxis.set_minor_locator(AutoMinorLocator(2)) # set x-ticks; only plot the unique tick labels ticks = se...

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def list_of_installed(self, repo, name): """Return installed packages """ all_installed_names = [] all_installed_packages = find_package("", self.meta.pkg_path) for inst in all_installed_packages: if repo == "sbo" and inst.endswith("_SBo"): name = spli...

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39.8

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def download(url): """ Download `url` and return it as utf-8 encoded text. Args: url (str): What should be downloaded? Returns: str: Content of the page. """ headers = {"User-Agent": USER_AGENT} resp = requests.get( url, timeout=REQUEST_TIMEOUT, head...

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def add_time_event(self, time_event): """Add a TimeEvent. :type time_event: :class: `~opencensus.trace.time_event.TimeEvent` :param time_event: A TimeEvent object. """ if isinstance(time_event, time_event_module.TimeEvent): self.time_events.append(time_event) ...

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def set(self, indexes=None, columns=None, values=None): """ Given indexes and columns will set a sub-set of the DataFrame to the values provided. This method will direct to the below methods based on what types are passed in for the indexes and columns. If the indexes or columns contains...

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def get_version_name(version_id): """ Get the name of a protocol version by the internal version ID. :param Integer version_id: Internal protocol version ID :return: Name of the version :rtype: String """ ver = registry.version_info.get(version_id) if ver: return ver.name r...

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def moran_cultural(network): """Generalized cultural Moran process. At eachtime step, an individual is chosen to receive information from another individual. Nobody dies, but perhaps their ideas do. """ if not network.transmissions(): # first step, replacer is a source replacer = random.ch...

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def get_status(self, hosts, services): """Get the status of this host :return: "UP", "DOWN", "UNREACHABLE" or "n/a" based on host state_id or business_rule state :rtype: str """ if self.got_business_rule: mapping = { 0: "UP", 1: "DOWN"...

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def respond(self): """Process the current request. From :pep:`333`: The start_response callable must not actually transmit the response headers. Instead, it must store them for the server or gateway to transmit only after the first iteration of the appli...

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def _scan_for_tokens(contents): """Scan a string for tokens and return immediate form tokens.""" # Regexes are in priority order. Changing the order may alter the # behavior of the lexer scanner = re.Scanner([ # Things inside quotes (r"(?<![^\s\(])([\"\'])(?:(?=(\\?))\2.)*?\1(?![^\s\)])"...

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def read_some(self): """Read at least one byte of cooked data unless EOF is hit. Return '' if EOF is hit. Block if no data is immediately available. """ self.process_rawq() while self.cookedq.tell() == 0 and not self.eof: self.fill_rawq() self.p...

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def post(self, endpoint, json=None, params=None, **kwargs): """POST to DHIS2 :param endpoint: DHIS2 API endpoint :param json: HTTP payload :param params: HTTP parameters :return: requests.Response object """ json = kwargs['data'] if 'data' in kwargs else json ...

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def _bundle_models(custom_models): """ Create a JavaScript bundle with selected `models`. """ exports = [] modules = [] def read_json(name): with io.open(join(bokehjs_dir, "js", name + ".json"), encoding="utf-8") as f: return json.loads(f.read()) bundles = ["bokeh", "bokeh-api"...

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def rollaxis(vari, axis, start=0): """ Roll the specified axis backwards, until it lies in a given position. Args: vari (chaospy.poly.base.Poly, numpy.ndarray): Input array or polynomial. axis (int): The axis to roll backwards. The positions of the other axes do not ...

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def _return_metadata(): """ Return JSON-formatted metadata for route attachment. Requires flask.current_app to be set, which means `with app.app_context()` """ app = current_app retdict = {"auth": app.config["AUTH"]["type"]} for fld in ["name", "repository", "version", "description", ...

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def lz (inlist, score): """ Returns the z-score for a given input score, given that score and the list from which that score came. Not appropriate for population calculations. Usage: lz(inlist, score) """ z = (score-mean(inlist))/samplestdev(inlist) return z

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29.555556

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def fetch(self, remote='origin'): """fetch from a remote""" git(self.gitdir, "fetch", remote, _env=self.env())

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41.333333

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def fitlin_clipped(xy,uv,verbose=False,mode='rscale',nclip=3,reject=3): """ Perform a clipped fit based on the number of iterations and rejection limit (in sigma) specified by the user. This will more closely replicate the results obtained by 'geomap' using 'maxiter' and 'reject' parameters. """...

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37.552632

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def assoc(m, *kvs): """Associate keys to values in associative data structure m. If m is None, returns a new Map with key-values kvs.""" if m is None: return lmap.Map.empty().assoc(*kvs) if isinstance(m, IAssociative): return m.assoc(*kvs) raise TypeError( f"Object of type {t...

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def do_capacity(self, line): "capacity [tablename] {read_units} {write_units}" table, line = self.get_table_params(line) args = self.getargs(line) read_units = int(args[0]) write_units = int(args[1]) desc = table.describe() prov = desc['Table']['ProvisionedThrou...

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42.75

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def _do_scatter_var(v, parallel): """Logic for scattering a variable. """ # For batches, scatter records only at the top level (double nested) if parallel.startswith("batch") and workflow.is_cwl_record(v): return (tz.get_in(["type", "type"], v) == "array" and tz.get_in(["type", "...

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44.2

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def split(nodeShape, jobShape, wallTime): """ Partition a node allocation into two to fit the job, returning the modified shape of the node and a new node reservation for the extra time that the job didn't fill. """ return (Shape(wallTime, nodeShape.memory - jobShape.memory, ...

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45.1875

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def get_relative_from_paths(self, filepath, paths): """ Find the relative filepath from the most relevant multiple paths. This is somewhat like a ``os.path.relpath(path[, start])`` but where ``start`` is a list. The most relevant item from ``paths`` will be used to apply the rel...

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def request(self, session_id): """Force the termination of a NETCONF session (not the current one!) *session_id* is the session identifier of the NETCONF session to be terminated as a string """ node = new_ele("kill-session") sub_ele(node, "session-id").text = session_id ...

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42.5

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def add_to_deleted_models(sender, instance=None, *args, **kwargs): """ Whenever a model is deleted, we record its ID in a separate model for tracking purposes. During serialization, we will mark the model as deleted in the store. """ if issubclass(sender, SyncableModel): instance._update_del...

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46.714286

16.714286

def file_attribs(location, mode=None, owner=None, group=None, sudo=False): """Updates the mode/owner/group for the remote file at the given location.""" return dir_attribs(location, mode, owner, group, False, sudo)

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55.75

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def _get_children_as_string(node): """Iterate through all the children of a node. Returns one string containing the values from all the text-nodes recursively. """ out = [] if node: for child in node: if child.nodeType == child.TEXT_NODE: out.append(child.dat...

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30.071429

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def verify_ethinca_metric_options(opts, parser): """ Checks that the necessary options are given for the ethinca metric calculation. Parameters ---------- opts : argparse.Values instance Result of parsing the input options with OptionParser parser : object The OptionParser i...

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46.68

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41.571429

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def search_function(root1, q, s, f, l, o='g'): """ function to get links """ global links links = search(q, o, s, f, l) root1.destroy() root1.quit()

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18.5

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def options_absent(name, sections=None, separator='='): ''' .. code-block:: yaml /home/saltminion/api-paste.ini: ini.options_absent: - separator: '=' - sections: test: - testkey - secondoption test1: ...

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37.453333

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def vmomentdensity(self,*args,**kwargs): """ NAME: vmomentdensity PURPOSE: calculate the an arbitrary moment of the velocity distribution at R times the density INPUT: R - radius at which to calculate the moment(/ro) n - vR^n ...

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29.985714

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def get_type(type_name): """Get a type given its importable name. Parameters ---------- task_name : `str` Name of the Python type, such as ``mypackage.MyClass``. Returns ------- object The object. """ parts = type_name.split('.') if len(parts) < 2: raise...

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25.136364

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def check_precomputed_distance_matrix(X): """Perform check_array(X) after removing infinite values (numpy.inf) from the given distance matrix. """ tmp = X.copy() tmp[np.isinf(tmp)] = 1 check_array(tmp)

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36

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def add_child(self, child, logical_block_size, allow_duplicate=False): # type: (DirectoryRecord, int, bool) -> bool ''' A method to add a new child to this directory record. Parameters: child - The child directory record object to add. logical_block_size - The size of ...

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47.333333

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def find_instance_and_eni_by_ip(vpc_info, ip): """ Given a specific IP address, find the EC2 instance and ENI. We need this information for setting the route. Returns instance and emi in a tuple. """ for instance in vpc_info['instances']: for eni in instance.interfaces: fo...

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35.25

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def building(shape=None, gray=False): """Photo of the Centre for Mathematical Sciences in Cambridge. Returns ------- An image with the following properties: image type: color (or gray scales if `gray=True`) size: [442, 331] (if not specified by `size`) scale: [0, 1] type...

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30.333333

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def get_next_step(self, step=None): """ Returns the next step after the given `step`. If no more steps are available, None will be returned. If the `step` argument is None, the current step will be determined automatically. """ if step is None: step = self.ste...

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37.866667

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def bed(args): """ %prog bed frgscffile Convert the frgscf posmap file to bed format. """ p = OptionParser(bed.__doc__) opts, args = p.parse_args(args) if len(args) != 1: sys.exit(not p.print_help()) frgscffile, = args bedfile = frgscffile.rsplit(".", 1)[0] + ".bed" fw...

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21.125

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def get_pages(parser, token): """Add to context the list of page links. Usage: .. code-block:: html+django {% get_pages %} This is mostly used for Digg-style pagination. This call inserts in the template context a *pages* variable, as a sequence of page links. You can use *pages* in ...

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24.95122

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def is_complex(arg): ''' is_complex(x) yields True if x is a complex numeric object and False otherwise. Note that this includes anything representable as as a complex number such as an integer or a boolean value. In effect, this makes this function an alias for is_number(arg). ''' return (i...

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57.444444

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def get_all_child_edges(self): """Return tuples for all child GO IDs, containing current GO ID and child GO ID.""" all_child_edges = set() for parent in self.children: all_child_edges.add((parent.item_id, self.item_id)) all_child_edges |= parent.get_all_child_edges() ...

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48.571429

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def select_candidates(config): """Select candidates to download. Parameters ---------- config: NgdConfig Runtime configuration object Returns ------- list of (<candidate entry>, <taxonomic group>) """ download_candidates = [] for group in config.group: summary...

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24.26087

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def parse_filespec(fspec, sep=':', gpat='*'): """ Parse given filespec `fspec` and return [(filetype, filepath)]. Because anyconfig.load should find correct file's type to load by the file extension, this function will not try guessing file's type if not file type is specified explicitly. :par...

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34.375

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def run(self): """ Run the given command and yield each line(s) one by one. .. note:: The difference between this method and :code:`self.execute()` is that :code:`self.execute()` wait for the process to end in order to return its output. """ ...

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34.78125

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def get_page_by_id_text(self, project, wiki_identifier, id, recursion_level=None, include_content=None, **kwargs): """GetPageByIdText. [Preview API] Gets metadata or content of the wiki page for the provided page id. Content negotiation is done based on the `Accept` header sent in the request. :...

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60.515152

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def start_drag(self, sprite, cursor_x = None, cursor_y = None): """start dragging given sprite""" cursor_x, cursor_y = cursor_x or sprite.x, cursor_y or sprite.y self._mouse_down_sprite = self._drag_sprite = sprite sprite.drag_x, sprite.drag_y = self._drag_sprite.x, self._drag_sprite.y ...

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52.125

23.5

def _ensure_update_ha_compliant(self, router, current_router, r_hd_binding_db): """To be called in update_router() BEFORE router has been updated in DB. """ if r_hd_binding_db.role == ROUTER_ROLE_HA_REDUNDANCY: return {ha.ENABLED: False} ...

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52.108108

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def _lastRecursiveChild(self): "Finds the last element beneath this object to be parsed." lastChild = self while hasattr(lastChild, 'contents') and lastChild.contents: lastChild = lastChild.contents[-1] return lastChild

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43

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def _decode(self): """ Convert the characters of character in value of component to standard value (WFN value). This function scans the value of component and returns a copy with all percent-encoded characters decoded. :exception: ValueError - invalid character in value ...

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37.085366

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def run(self, options, args): """Prints the completion code of the given shell""" shells = COMPLETION_SCRIPTS.keys() shell_options = ['--' + shell for shell in sorted(shells)] if options.shell in shells: script = COMPLETION_SCRIPTS.get(options.shell, '') print(BAS...

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45.363636

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def folderitems(self): """TODO: Refactor to non-classic mode """ items = super(AnalysisSpecificationView, self).folderitems() self.categories.sort() return items

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32.666667

12.666667

def _make_2d_array(self, data): """ Convert a 1D array of mesh values to a masked 2D mesh array given the 1D mesh indices ``mesh_idx``. Parameters ---------- data : 1D `~numpy.ndarray` A 1D array of mesh values. Returns ------- result...

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31.314286

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def _join_paragraphs(cls, lines, use_indent=False, leading_blanks=False, trailing_blanks=False): """Join adjacent lines together into paragraphs using either a blank line or indent as separator.""" curr_para = [] paragraphs = [] for line in lines: if use_indent: ...

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38.2

22.133333

def pre_encrypt_assertion(response): """ Move the assertion to within a encrypted_assertion :param response: The response with one assertion :return: The response but now with the assertion within an encrypted_assertion. """ assertion = response.assertion response.assertion = None ...

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38.1875

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def resolve_variables(self, task): """ Resolve task variables based on input variables and the default values. Raises ------ LookupError If a variable is missing. """ variables = {**task.variables, **self.project.variables} values = ...

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25.409091

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def word_ngrams(s, n=3, token_fn=tokens.on_whitespace): """ Word-level n-grams in a string By default, whitespace is assumed to be a word boundary. >>> ng.word_ngrams('This is not a test!') [('This', 'is', 'not'), ('is', 'not', 'a'), ('not', 'a', 'test!')] If the sequence'...

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27.434783

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def get_similar_users(self, users=None, k=10): """Get the k most similar users for each entry in `users`. Each type of recommender has its own model for the similarity between users. For example, the factorization_recommender will return the nearest users based on the cosine similarity ...

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38.359375

24.15625

def get_object_by_name(self, name): """Find an object :param name: Name of object. Case-sensitive. :rtype: Object if found, otherwise ValueError """ for obj in self.objects: if obj.name == name: return obj raise ValueError

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29.1

11.7

def logItems(self, level=logging.DEBUG): """ rootItem """ rootItem = self.rootItem() if rootItem is None: logger.debug("No items in: {}".format(self)) else: rootItem.logBranch(level=level)

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30.625

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def backbone_bond_angles(self): """Dictionary containing backbone bond angles as lists of floats. Returns ------- bond_angles : dict Keys are `n_ca_c`, `ca_c_o`, `ca_c_n` and `c_n_ca`, referring to the N-CA-C, CA-C=O, CA-C-N and C-N-CA angles respectively. ...

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54.115385

27.115385

def get_self_ip(): """获取本机公网ip地址""" TEST_IP = 'http://httpbin.org/ip' html = requests.get(TEST_IP) ip = json.loads(html.text)['origin'] return ip

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26.666667

10

def char_beam_search(out): """ Description : apply beam search for prediction result """ out_conv = list() for idx in range(out.shape[0]): probs = out[idx] prob = probs.softmax().asnumpy() line_string_proposals = ctcBeamSearch(prob, ALPHABET, None, k=4, beamWidth=25) ...

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33.727273

13.363636

def get_leapdays(init_date, final_date): """ Find the number of leap days between arbitrary dates. Returns a timedelta object. FIXME: calculate this instead of iterating. """ curr_date = init_date leap_days = 0 while curr_date != final_date: if curr_date.month == 2 and curr_d...

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23.105263

19.947368

def output_to_terminal(sources): """Print statistics to the terminal""" results = OrderedDict() for source in sources: if source.get_is_available(): source.update() results.update(source.get_summary()) for key, value in results.items(): sys.stdout.write(str(key) +...

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34.363636

11.090909

def like(self): """ Like a clip. """ r = requests.post( "https://kippt.com/api/clips/%s/likes" % (self.id), headers=self.kippt.header ) return (r.json())

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23.333333

16.777778

def get_species(taxdump_file, select_divisions=None, exclude_divisions=None, nrows=None): """Get a dataframe with species information.""" if select_divisions and exclude_divisions: raise ValueError('Cannot specify "select_divisions" and ' '"exclude_divisions...

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37.88

17.06

def load(self, name): """ If not yet in the cache, load the named template and compiles it, placing it into the cache. If in cache, return the cached template. """ if self.reload: self._maybe_purge_cache() template = self.cache.get(name) if ...

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26.896552

19.172414

def empty_platform(cls, arch): """ Create a platform without an ELF loaded. :param str arch: The architecture of the new platform :rtype: Linux """ platform = cls(None) platform._init_cpu(arch) platform._init_std_fds() return platform

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27

13

def user_feature_update(self, userid, payload): ''' update features by user id ''' response, status_code = self.__pod__.User.post_v1_admin_user_uid_features_update( sessionToken=self.__session__, uid=userid, payload=payload ).result() self.logger.debug...

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42.777778

15.222222

def options(self, parser, env=os.environ): """Register commandline options.""" super(TimerPlugin, self).options(parser, env) # timer top n parser.add_option( "--timer-top-n", action="store", default="-1", dest="timer_top_n", he...

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30.554217

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def parse_limits_list(path, limits): """Parse a structured list of flux limits as obtained from a YAML file Yields tuples of reaction ID, lower and upper flux bounds. Path can be given as a string or a context. """ context = FilePathContext(path) for limit_def in limits: if 'include' ...

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33.125

17.0625

def dump(database, output, min_occurences=1, max_occurences=250, returncmd=False): """ Dumps output from kmc database into tab-delimited format. :param database: Database generated by kmc. :param output: Name for output. :param min_occurences: Minimum number of times kmer must be in database to be d...

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49

24.125

def validate_authorization_request(self, uri, http_method='GET', body=None, headers=None): """Extract response_type and route to the designated handler.""" request = Request( uri, http_method=http_method, body=body, headers=headers) request.sco...

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50.545455

24.727273