kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def prepare_env(gdef='', gvars={}, extra_vars={}, host='localhost'): '''clear current sos_dict, execute global_def (definitions and imports), and inject global variables''' env.sos_dict.clear() if not gdef and not gvars: # SoS Notebook calls prepare_env without global statement from a #...	[ "def", "prepare_env", "(", "gdef", "=", "''", ",", "gvars", "=", "{", "}", ",", "extra_vars", "=", "{", "}", ",", "host", "=", "'localhost'", ")", ":", "env", ".", "sos_dict", ".", "clear", "(", ")", "if", "not", "gdef", "and", "not", "gvars", ":...	45.711864	22.186441
def otsu(data, min_threshold=None, max_threshold=None,bins=256): """Compute a threshold using Otsu's method data - an array of intensity values between zero and one min_threshold - only consider thresholds above this minimum value max_threshold - only consider thresholds below this maxi...	[ "def", "otsu", "(", "data", ",", "min_threshold", "=", "None", ",", "max_threshold", "=", "None", ",", "bins", "=", "256", ")", ":", "assert", "min_threshold", "is", "None", "or", "max_threshold", "is", "None", "or", "min_threshold", "<", "max_threshold", ...	40.563636	18.4
def configure(obj, token): """Use this command to configure API tokens """ config = obj.get('config') or FileConfig(obj['profile']) config.auth_token = token config.save()	[ "def", "configure", "(", "obj", ",", "token", ")", ":", "config", "=", "obj", ".", "get", "(", "'config'", ")", "or", "FileConfig", "(", "obj", "[", "'profile'", "]", ")", "config", ".", "auth_token", "=", "token", "config", ".", "save", "(", ")" ]	31	11.333333
def cartesian_cs(self): """The :class:`CartesianCS` which describes the coordinate axes.""" cs = self.element.find(GML_NS + 'cartesianCS') href = cs.attrib[XLINK_NS + 'href'] return get(href)	[ "def", "cartesian_cs", "(", "self", ")", ":", "cs", "=", "self", ".", "element", ".", "find", "(", "GML_NS", "+", "'cartesianCS'", ")", "href", "=", "cs", ".", "attrib", "[", "XLINK_NS", "+", "'href'", "]", "return", "get", "(", "href", ")" ]	43.8	10
def save_file(self, title="Save As", initialDir="~", fileTypes="\|All Files", rememberAs=None, kwargs): """ Show a Save As dialog Usage: C{dialog.save_file(title="Save As", initialDir="~", fileTypes="\|All Files", rememberAs=None, **kwargs)} @param title: window title...	[ "def", "save_file", "(", "self", ",", "title", "=", "\"Save As\"", ",", "initialDir", "=", "\"~\"", ",", "fileTypes", "=", "\"\|All Files\"", ",", "rememberAs", "=", "None", ",", "", "*", "kwargs", ")", ":", "if", "rememberAs", "is", "not", "None", ":",...	54.705882	30.941176
def copy_location(new_node, old_node): """ Copy the source location hint (`lineno` and `col_offset`) from the old to the new node if possible and return the new one. """ for attr in 'lineno', 'col_offset': if attr in old_node._attributes and attr in new_node._attributes \ and hasa...	[ "def", "copy_location", "(", "new_node", ",", "old_node", ")", ":", "for", "attr", "in", "'lineno'", ",", "'col_offset'", ":", "if", "attr", "in", "old_node", ".", "_attributes", "and", "attr", "in", "new_node", ".", "_attributes", "and", "hasattr", "(", "...	41.2	12.8
def loop(self, timeout = 1): """Main loop.""" rlist = [self.sock] wlist = [] if len(self.out_packet) > 0: wlist.append(self.sock) to_read, to_write, _ = select.select(rlist, wlist, [], timeout) if len(to_read) > 0: ret, _ = self.loop_read...	[ "def", "loop", "(", "self", ",", "timeout", "=", "1", ")", ":", "rlist", "=", "[", "self", ".", "sock", "]", "wlist", "=", "[", "]", "if", "len", "(", "self", ".", "out_packet", ")", ">", "0", ":", "wlist", ".", "append", "(", "self", ".", "s...	26.636364	15.454545
def create_eager_metrics_for_problem(problem, model_hparams): """See create_eager_metrics.""" metric_fns = problem.eval_metric_fns(model_hparams) problem_hparams = problem.get_hparams(model_hparams) target_modality = problem_hparams.modality["targets"] weights_fn = model_hparams.weights_fn.get( "targets...	[ "def", "create_eager_metrics_for_problem", "(", "problem", ",", "model_hparams", ")", ":", "metric_fns", "=", "problem", ".", "eval_metric_fns", "(", "model_hparams", ")", "problem_hparams", "=", "problem", ".", "get_hparams", "(", "model_hparams", ")", "target_modali...	48.666667	14.777778
def _draw_breakpoint_icon(self, top, painter, icon_name): """Draw the given breakpoint pixmap. Args: top (int): top of the line to draw the breakpoint icon. painter (QPainter) icon_name (srt): key of icon to draw (see: self.icons) """ rect = QRect(0, ...	[ "def", "_draw_breakpoint_icon", "(", "self", ",", "top", ",", "painter", ",", "icon_name", ")", ":", "rect", "=", "QRect", "(", "0", ",", "top", ",", "self", ".", "sizeHint", "(", ")", ".", "width", "(", ")", ",", "self", ".", "sizeHint", "(", ")",...	36.6875	16.5
def jsonex_request(url, data, headers=None): """ Make a request with JsonEx :param url: URL :type url: str :param data: Data to POST :type data: dict :return: Response :rtype: dict :raises exc.ConnectionError: Connection error :raises exc.ServerError: Remote server error (unknown) ...	[ "def", "jsonex_request", "(", "url", ",", "data", ",", "headers", "=", "None", ")", ":", "# Authentication?", "url", ",", "headers", "=", "_parse_authentication", "(", "url", ")", "headers", "[", "'Content-Type'", "]", "=", "'application/json'", "# Request", "...	33.114286	19.142857
def from_table(fileobj=None, url='http://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/knownGene.txt.gz', parser=UCSCTable.KNOWN_GENE, mode='tx', decompress=None): ''' UCSC Genome project provides several tables with gene coordinates (https://genome.ucsc.edu/cgi-bin/hgTables), ...	[ "def", "from_table", "(", "fileobj", "=", "None", ",", "url", "=", "'http://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/knownGene.txt.gz'", ",", "parser", "=", "UCSCTable", ".", "KNOWN_GENE", ",", "mode", "=", "'tx'", ",", "decompress", "=", "None", ")", ":", ...	55.917808	37.178082
def _args_for_remote(self): """ Generate arguments for 'terraform remote config'. Return None if not present in configuration. :return: list of args for 'terraform remote config' or None :rtype: :std:term:`list` """ conf = self.config.get('terraform_remote_state'...	[ "def", "_args_for_remote", "(", "self", ")", ":", "conf", "=", "self", ".", "config", ".", "get", "(", "'terraform_remote_state'", ")", "if", "conf", "is", "None", ":", "return", "None", "args", "=", "[", "'-backend=%s'", "%", "conf", "[", "'backend'", "...	35.8	15.4
def run(self, quil_program, classical_addresses: List[int] = None, trials=1): """ Run a Quil program multiple times, accumulating the values deposited in a list of classical addresses. :param Program quil_program: A Quil program. :param classical_addresses: The class...	[ "def", "run", "(", "self", ",", "quil_program", ",", "classical_addresses", ":", "List", "[", "int", "]", "=", "None", ",", "trials", "=", "1", ")", ":", "if", "classical_addresses", "is", "None", ":", "caddresses", "=", "get_classical_addresses_from_program",...	45.121212	26.272727
def go_to_column(self, column): """ Moves the text cursor to given column. :param column: Column to go to. :type column: int :return: Method success. :rtype: bool """ cursor = self.textCursor() cursor.setPosition(cursor.block().position() + colum...	[ "def", "go_to_column", "(", "self", ",", "column", ")", ":", "cursor", "=", "self", ".", "textCursor", "(", ")", "cursor", ".", "setPosition", "(", "cursor", ".", "block", "(", ")", ".", "position", "(", ")", "+", "column", ")", "self", ".", "setText...	26	13.857143
def __validate(self, oid): """Validate and use the given id for this ObjectId. Raises TypeError if id is not an instance of (:class:`basestring` (:class:`str` or :class:`bytes` in python 3), ObjectId) and InvalidId if it is not a valid ObjectId. :Parameters: -...	[ "def", "__validate", "(", "self", ",", "oid", ")", ":", "if", "isinstance", "(", "oid", ",", "ObjectId", ")", ":", "self", ".", "__id", "=", "oid", ".", "binary", "# bytes or unicode in python 2, str in python 3", "elif", "isinstance", "(", "oid", ",", "stri...	36.88	15.44
def initial_global_state(self) -> GlobalState: """Initialize the execution environment.""" environment = Environment( self.callee_account, self.caller, self.call_data, self.gas_price, self.call_value, self.origin, code=s...	[ "def", "initial_global_state", "(", "self", ")", "->", "GlobalState", ":", "environment", "=", "Environment", "(", "self", ".", "callee_account", ",", "self", ".", "caller", ",", "self", ".", "call_data", ",", "self", ".", "gas_price", ",", "self", ".", "c...	34.142857	14.214286
def get_content_metadata(id, version, cursor): """Return metadata related to the content from the database.""" # Do the module lookup args = dict(id=id, version=version) # FIXME We are doing two queries here that can hopefully be # condensed into one. cursor.execute(SQL['get-module-metadat...	[ "def", "get_content_metadata", "(", "id", ",", "version", ",", "cursor", ")", ":", "# Do the module lookup", "args", "=", "dict", "(", "id", "=", "id", ",", "version", "=", "version", ")", "# FIXME We are doing two queries here that can hopefully be", "# condens...	46.913043	20.695652
def compute(self): """ Compute a MaxSAT solution. First, the method checks whether or not the set of hard clauses is satisfiable. If not, the method returns ``False``. Otherwise, add soft clauses to the oracle and call the MaxSAT algorithm (see :func:`_compute`). ...	[ "def", "compute", "(", "self", ")", ":", "if", "self", ".", "oracle", ".", "solve", "(", ")", ":", "# hard part is satisfiable", "# create selectors and a mapping from selectors to clause ids", "self", ".", "sels", ",", "self", ".", "vmap", "=", "[", "]", ",", ...	37.30303	20.636364
def macro_attachment_create(self, macro_id, data, **kwargs): "https://developer.zendesk.com/rest_api/docs/core/macros#create-macro-attachment" api_path = "/api/v2/macros/{macro_id}/attachments.json" api_path = api_path.format(macro_id=macro_id) return self.call(api_path, method="POST", d...	[ "def", "macro_attachment_create", "(", "self", ",", "macro_id", ",", "data", ",", "", "", "kwargs", ")", ":", "api_path", "=", "\"/api/v2/macros/{macro_id}/attachments.json\"", "api_path", "=", "api_path", ".", "format", "(", "macro_id", "=", "macro_id", ")", ...	67	27
def add_to_fields(self): '''Add this :class:`Field` to the fields of :attr:`model`.''' meta = self.model._meta meta.scalarfields.append(self) if self.index: meta.indices.append(self)	[ "def", "add_to_fields", "(", "self", ")", ":", "meta", "=", "self", ".", "model", ".", "_meta", "meta", ".", "scalarfields", ".", "append", "(", "self", ")", "if", "self", ".", "index", ":", "meta", ".", "indices", ".", "append", "(", "self", ")" ]	36.833333	12.833333
def create_project(self, project_name, project_des): """ Create a project Unsuccessful opertaion will cause an LogException. :type project_name: string :param project_name: the Project name :type project_des: string :param project_des: the description of a proj...	[ "def", "create_project", "(", "self", ",", "project_name", ",", "project_des", ")", ":", "params", "=", "{", "}", "body", "=", "{", "\"projectName\"", ":", "project_name", ",", "\"description\"", ":", "project_des", "}", "body", "=", "six", ".", "b", "(", ...	32.916667	22.291667
def open(self): """ Opens a WinDivert handle for the given filter. Unless otherwise specified by flags, any packet that matches the filter will be diverted to the handle. Diverted packets can be read by the application with receive(). The remapped function is WinDivertOpen:: ...	[ "def", "open", "(", "self", ")", ":", "if", "self", ".", "is_open", ":", "raise", "RuntimeError", "(", "\"WinDivert handle is already open.\"", ")", "self", ".", "_handle", "=", "windivert_dll", ".", "WinDivertOpen", "(", "self", ".", "_filter", ",", "self", ...	40.904762	23.190476
def declination_cooper69(dayofyear): """ Solar declination from Duffie & Beckman [1] and attributed to Cooper (1969) .. warning:: Return units are radians, not degrees. Declination can be expressed using either sine or cosine: .. math:: \\delta = 23.45 \\sin \\left( \\frac{2 \\pi}...	[ "def", "declination_cooper69", "(", "dayofyear", ")", ":", "day_angle", "=", "_calculate_simple_day_angle", "(", "dayofyear", ")", "dec", "=", "np", ".", "deg2rad", "(", "23.45", "", "np", ".", "sin", "(", "day_angle", "+", "(", "2.0", "", "np", ".", "...	29.953488	26.325581
def shorten_string(string, max_width): ''' make limited length string in form: "the string is very lo...(and 15 more)" ''' string_len = len(string) if string_len <= max_width: return string visible = max_width - 16 - int(log10(string_len)) # expected suffix len "...(and XXXXX more)...	[ "def", "shorten_string", "(", "string", ",", "max_width", ")", ":", "string_len", "=", "len", "(", "string", ")", "if", "string_len", "<=", "max_width", ":", "return", "string", "visible", "=", "max_width", "-", "16", "-", "int", "(", "log10", "(", "stri...	37.533333	12.466667
def _connect(self): """ Connexion à la base XAIR """ try: # On passe par Oracle Instant Client avec le TNS ORA_FULL self.conn = cx_Oracle.connect(self._ORA_FULL) self.cursor = self.conn.cursor() print('XAIR: Connexion établie') exc...	[ "def", "_connect", "(", "self", ")", ":", "try", ":", "# On passe par Oracle Instant Client avec le TNS ORA_FULL", "self", ".", "conn", "=", "cx_Oracle", ".", "connect", "(", "self", ".", "_ORA_FULL", ")", "self", ".", "cursor", "=", "self", ".", "conn", ".", ...	32.846154	13.307692
def cross_goal(state): """ The goal function for cross solving search. """ centres, edges = state for edge in edges: if "D" not in edge.facings: return False if edge["D"] != centres["D"]["D"]: return False k = ""...	[ "def", "cross_goal", "(", "state", ")", ":", "centres", ",", "edges", "=", "state", "for", "edge", "in", "edges", ":", "if", "\"D\"", "not", "in", "edge", ".", "facings", ":", "return", "False", "if", "edge", "[", "\"D\"", "]", "!=", "centres", "[", ...	31.428571	9.857143
def query_row(stmt, args=(), factory=None): """ Execute a query. Returns the first row of the result set, or `None`. """ for row in query(stmt, args, factory): return row return None	[ "def", "query_row", "(", "stmt", ",", "args", "=", "(", ")", ",", "factory", "=", "None", ")", ":", "for", "row", "in", "query", "(", "stmt", ",", "args", ",", "factory", ")", ":", "return", "row", "return", "None" ]	29.142857	12
def is_reachable_host(entity_name): ''' Returns a bool telling if the entity name is a reachable host (IPv4/IPv6/FQDN/etc). :param hostname: :return: ''' try: assert type(socket.getaddrinfo(entity_name, 0, 0, 0, 0)) == list ret = True except socket.gaierror: ret = Fal...	[ "def", "is_reachable_host", "(", "entity_name", ")", ":", "try", ":", "assert", "type", "(", "socket", ".", "getaddrinfo", "(", "entity_name", ",", "0", ",", "0", ",", "0", ",", "0", ")", ")", "==", "list", "ret", "=", "True", "except", "socket", "."...	25.076923	27.076923
def prepare(self, rule): """ Parse and/or compile given rule into rule tree. :param rule: Filtering grammar rule. :return: Parsed and/or compiled rule. """ if self.parser: rule = self.parser.parse(rule) if self.compiler: rule = self.compil...	[ "def", "prepare", "(", "self", ",", "rule", ")", ":", "if", "self", ".", "parser", ":", "rule", "=", "self", ".", "parser", ".", "parse", "(", "rule", ")", "if", "self", ".", "compiler", ":", "rule", "=", "self", ".", "compiler", ".", "compile", ...	28.75	11.75
def load_plugins(self, args=None): """Load all plugins in the 'plugins' folder.""" for item in os.listdir(plugins_path): if (item.startswith(self.header) and item.endswith(".py") and item != (self.header + "plugin.py")): # Load the plug...	[ "def", "load_plugins", "(", "self", ",", "args", "=", "None", ")", ":", "for", "item", "in", "os", ".", "listdir", "(", "plugins_path", ")", ":", "if", "(", "item", ".", "startswith", "(", "self", ".", "header", ")", "and", "item", ".", "endswith", ...	45	14.916667
def delete_lambda(awsclient, function_name, events=None, delete_logs=False): """Delete a lambda function. :param awsclient: :param function_name: :param events: list of events :param delete_logs: :return: exit_code """ if events is not None: unwire(awsclient, events, function_na...	[ "def", "delete_lambda", "(", "awsclient", ",", "function_name", ",", "events", "=", "None", ",", "delete_logs", "=", "False", ")", ":", "if", "events", "is", "not", "None", ":", "unwire", "(", "awsclient", ",", "events", ",", "function_name", ",", "alias_n...	35.25	19.8
def element_to_objects( element: etree.ElementTree, sender: str, sender_key_fetcher:Callable[[str], str]=None, user: UserType =None, ) -> List: """Transform an Element to a list of entities recursively. Possible child entities are added to each entity ``_children`` list. :param tree: Element :...	[ "def", "element_to_objects", "(", "element", ":", "etree", ".", "ElementTree", ",", "sender", ":", "str", ",", "sender_key_fetcher", ":", "Callable", "[", "[", "str", "]", ",", "str", "]", "=", "None", ",", "user", ":", "UserType", "=", "None", ",", ")...	38.216667	20.466667
def predict_unseen(self, times, config): """ predict the loss of an unseen configuration Parameters: ----------- times: numpy array times where to predict the loss config: numpy array the numerical representation of th...	[ "def", "predict_unseen", "(", "self", ",", "times", ",", "config", ")", ":", "assert", "np", ".", "all", "(", "times", ">", "0", ")", "and", "np", ".", "all", "(", "times", "<=", "self", ".", "max_num_epochs", ")", "x", "=", "np", ".", "array", "...	26.758621	20.206897
def change_id(self, new_id_for_id): """ Changes the id of the specified motors (each id must be unique on the bus). """ if len(set(new_id_for_id.values())) < len(new_id_for_id): raise ValueError('each id must be unique.') for new_id in new_id_for_id.itervalues(): if self...	[ "def", "change_id", "(", "self", ",", "new_id_for_id", ")", ":", "if", "len", "(", "set", "(", "new_id_for_id", ".", "values", "(", ")", ")", ")", "<", "len", "(", "new_id_for_id", ")", ":", "raise", "ValueError", "(", "'each id must be unique.'", ")", "...	45.722222	17.777778
def commitVCS(self, tag=None): ''' Commit the current working directory state (or do nothing if the working directory is not version controlled) ''' if not self.vcs: return self.vcs.commit(message='version %s' % tag, tag=tag)	[ "def", "commitVCS", "(", "self", ",", "tag", "=", "None", ")", ":", "if", "not", "self", ".", "vcs", ":", "return", "self", ".", "vcs", ".", "commit", "(", "message", "=", "'version %s'", "%", "tag", ",", "tag", "=", "tag", ")" ]	39.285714	21.285714
def get_char_type(ch): """ 0, 汉字 1, 英文字母 2. 数字 3. 其他 """ if re.match(en_p, ch): return 1 elif re.match("\d+", ch): return 2 elif re.match(re_han, ch): return 3 else: return 4	[ "def", "get_char_type", "(", "ch", ")", ":", "if", "re", ".", "match", "(", "en_p", ",", "ch", ")", ":", "return", "1", "elif", "re", ".", "match", "(", "\"\\d+\"", ",", "ch", ")", ":", "return", "2", "elif", "re", ".", "match", "(", "re_han", ...	15.466667	20.133333
def get_decoded_jwt(request): """ Grab jwt from jwt cookie in request if possible. Returns a decoded jwt dict if it can be found. Returns None if the jwt is not found. """ jwt_cookie = request.COOKIES.get(jwt_cookie_name(), None) if not jwt_cookie: return None return jwt_decode...	[ "def", "get_decoded_jwt", "(", "request", ")", ":", "jwt_cookie", "=", "request", ".", "COOKIES", ".", "get", "(", "jwt_cookie_name", "(", ")", ",", "None", ")", "if", "not", "jwt_cookie", ":", "return", "None", "return", "jwt_decode_handler", "(", "jwt_cook...	27.416667	14.583333
def quoted_insert(self, e): # (C-q or C-v) u'''Add the next character typed to the line verbatim. This is how to insert key sequences like C-q, for example.''' e = self.console.getkeypress() self.insert_text(e.char)	[ "def", "quoted_insert", "(", "self", ",", "e", ")", ":", "# (C-q or C-v)\r", "e", "=", "self", ".", "console", ".", "getkeypress", "(", ")", "self", ".", "insert_text", "(", "e", ".", "char", ")" ]	49.4	13
def export_agg_losses(ekey, dstore): """ :param ekey: export key, i.e. a pair (datastore key, fmt) :param dstore: datastore object """ dskey = ekey[0] oq = dstore['oqparam'] dt = oq.loss_dt() name, value, tags = _get_data(dstore, dskey, oq.hazard_stats().items()) writer = writers.Csv...	[ "def", "export_agg_losses", "(", "ekey", ",", "dstore", ")", ":", "dskey", "=", "ekey", "[", "0", "]", "oq", "=", "dstore", "[", "'oqparam'", "]", "dt", "=", "oq", ".", "loss_dt", "(", ")", "name", ",", "value", ",", "tags", "=", "_get_data", "(", ...	40.884615	12.038462
def loads(cls, json_text, schema=None): """ :param str json_text: json text to be parse :param voluptuous.Schema schema: JSON schema. :return: Dictionary storing the parse results of JSON :rtype: dictionary :raises ImportError: :raises RuntimeError: :raise...	[ "def", "loads", "(", "cls", ",", "json_text", ",", "schema", "=", "None", ")", ":", "try", ":", "json_text", "=", "json_text", ".", "decode", "(", "\"ascii\"", ")", "except", "AttributeError", ":", "pass", "try", ":", "dict_json", "=", "json", ".", "lo...	29.428571	18.142857
def head_and_tail_print(self, n=5): """Display the first and last n elements of a DataFrame.""" from IPython import display display.display(display.HTML(self._head_and_tail_table(n)))	[ "def", "head_and_tail_print", "(", "self", ",", "n", "=", "5", ")", ":", "from", "IPython", "import", "display", "display", ".", "display", "(", "display", ".", "HTML", "(", "self", ".", "_head_and_tail_table", "(", "n", ")", ")", ")" ]	51	9.25
def execution_duration(self): """ Returns total BMDS execution time, in seconds. """ duration = None if self.execution_start and self.execution_end: delta = self.execution_end - self.execution_start duration = delta.total_seconds() return duration	[ "def", "execution_duration", "(", "self", ")", ":", "duration", "=", "None", "if", "self", ".", "execution_start", "and", "self", ".", "execution_end", ":", "delta", "=", "self", ".", "execution_end", "-", "self", ".", "execution_start", "duration", "=", "de...	34.555556	11
def ask_overwrite(dest): """Check if file dest exists. If 'True', asks if the user wants to overwrite it (just remove the file for later overwrite). """ msg = "File '{}' already exists. Overwrite file?".format(dest) if os.path.exists(dest): if yes_no_query(msg): os.remove(dest...	[ "def", "ask_overwrite", "(", "dest", ")", ":", "msg", "=", "\"File '{}' already exists. Overwrite file?\"", ".", "format", "(", "dest", ")", "if", "os", ".", "path", ".", "exists", "(", "dest", ")", ":", "if", "yes_no_query", "(", "msg", ")", ":", "os", ...	33.909091	15.909091
def is_subfeature_of (parent_property, f): """ Return true iff f is an ordinary subfeature of the parent_property's feature, or if f is a subfeature of the parent_property's feature specific to the parent_property's value. """ if __debug__: from .property import Property asse...	[ "def", "is_subfeature_of", "(", "parent_property", ",", "f", ")", ":", "if", "__debug__", ":", "from", ".", "property", "import", "Property", "assert", "isinstance", "(", "parent_property", ",", "Property", ")", "assert", "isinstance", "(", "f", ",", "Feature"...	25.814815	20.666667
def style(self, value): """ Setter for self.__style attribute. :param value: Attribute value. :type value: Style """ if value is not None: assert type(value) is Style, "'{0}' attribute: '{1}' type is not 'Style'!".format("style", value) style...	[ "def", "style", "(", "self", ",", "value", ")", ":", "if", "value", "is", "not", "None", ":", "assert", "type", "(", "value", ")", "is", "Style", ",", "\"'{0}' attribute: '{1}' type is not 'Style'!\"", ".", "format", "(", "\"style\"", ",", "value", ")", "s...	30.733333	17.266667
def pubmed(self, pubmedid=None, hgnc_symbol=None, hgnc_identifier=None, limit=None, as_df=False): """Method to query :class:`.models.PubMed` objects in database :param pubmedid: alias symbol(s) :type pubmedid: str or tuple(str) or None :param hgnc_symbol: HGNC symbol(s) :type h...	[ "def", "pubmed", "(", "self", ",", "pubmedid", "=", "None", ",", "hgnc_symbol", "=", "None", ",", "hgnc_identifier", "=", "None", ",", "limit", "=", "None", ",", "as_df", "=", "False", ")", ":", "q", "=", "self", ".", "session", ".", "query", "(", ...	39.025	24.7
def _isdst(dt): """Check if date is in dst. """ if type(dt) == datetime.date: dt = datetime.datetime.combine(dt, datetime.datetime.min.time()) dtc = dt.replace(year=datetime.datetime.now().year) if time.localtime(dtc.timestamp()).tm_isdst == 1: return True return False	[ "def", "_isdst", "(", "dt", ")", ":", "if", "type", "(", "dt", ")", "==", "datetime", ".", "date", ":", "dt", "=", "datetime", ".", "datetime", ".", "combine", "(", "dt", ",", "datetime", ".", "datetime", ".", "min", ".", "time", "(", ")", ")", ...	33.444444	15.222222
def process_row(cls, data, column_map): """Process the row data from Rekall""" row = {} for key,value in data.iteritems(): if not value: value = '-' elif isinstance(value, list): value = value[1] elif isinstance(...	[ "def", "process_row", "(", "cls", ",", "data", ",", "column_map", ")", ":", "row", "=", "{", "}", "for", "key", ",", "value", "in", "data", ".", "iteritems", "(", ")", ":", "if", "not", "value", ":", "value", "=", "'-'", "elif", "isinstance", "(", ...	41.5	13.5
async def recv(self): """ Receive the next :class:`~av.audio.frame.AudioFrame`. The base implementation just reads silence, subclass :class:`AudioStreamTrack` to provide a useful implementation. """ if self.readyState != 'live': raise MediaStreamError ...	[ "async", "def", "recv", "(", "self", ")", ":", "if", "self", ".", "readyState", "!=", "'live'", ":", "raise", "MediaStreamError", "sample_rate", "=", "8000", "samples", "=", "int", "(", "AUDIO_PTIME", "*", "sample_rate", ")", "if", "hasattr", "(", "self", ...	33.892857	16.178571
def refresh_styles(self): """Load all available styles""" import matplotlib.pyplot as plt self.colours = {} for style in plt.style.available: try: style_colours = plt.style.library[style]['axes.prop_cycle'] self.colours[style] = [c['color'] fo...	[ "def", "refresh_styles", "(", "self", ")", ":", "import", "matplotlib", ".", "pyplot", "as", "plt", "self", ".", "colours", "=", "{", "}", "for", "style", "in", "plt", ".", "style", ".", "available", ":", "try", ":", "style_colours", "=", "plt", ".", ...	34	19.9375
def det_optimal_snrsq(self, det): """Returns the opitmal SNR squared in the given detector. Parameters ---------- det : str The name of the detector. Returns ------- float : The opimtal SNR squared. """ # try to get it fro...	[ "def", "det_optimal_snrsq", "(", "self", ",", "det", ")", ":", "# try to get it from current stats", "try", ":", "return", "getattr", "(", "self", ".", "_current_stats", ",", "'{}_optimal_snrsq'", ".", "format", "(", "det", ")", ")", "except", "AttributeError", ...	30.714286	18.714286
def set_dicts(self, word_dict, char_dict): """Set with custom dictionaries. :param word_dict: The word dictionary. :param char_dict: The character dictionary. """ self.word_dict = word_dict self.char_dict = char_dict	[ "def", "set_dicts", "(", "self", ",", "word_dict", ",", "char_dict", ")", ":", "self", ".", "word_dict", "=", "word_dict", "self", ".", "char_dict", "=", "char_dict" ]	32.25	8.875
def interpolations_to_summary(sample_ind, interpolations, first_frame, last_frame, hparams, decode_hp): """Converts interpolated frames into tf summaries. The summaries consists of: 1. Image summary corresponding to the first frame. 2. Image summary corresponding to the last f...	[ "def", "interpolations_to_summary", "(", "sample_ind", ",", "interpolations", ",", "first_frame", ",", "last_frame", ",", "hparams", ",", "decode_hp", ")", ":", "parent_tag", "=", "\"sample_%d\"", "%", "sample_ind", "frame_shape", "=", "hparams", ".", "problem", "...	40.410256	14.641026
def _parse_members(self, contents, module): """Extracts any module-level members from the code. They must appear before any type declalations.""" #We need to get hold of the text before the module's main CONTAINS keyword #so that we don't find variables from executables and claim them as...	[ "def", "_parse_members", "(", "self", ",", "contents", ",", "module", ")", ":", "#We need to get hold of the text before the module's main CONTAINS keyword", "#so that we don't find variables from executables and claim them as", "#belonging to the module.", "icontains", "=", "module", ...	47.829787	22.255319
def set(self, model, property_name, value): """ Set model property to value. Use setter if possible. :param model: model object or dict :param property_name: str, name on the model :param value: mixed, a value to set :return: None """ if type(model) is dic...	[ "def", "set", "(", "self", ",", "model", ",", "property_name", ",", "value", ")", ":", "if", "type", "(", "model", ")", "is", "dict", ":", "model", "[", "property_name", "]", "=", "value", "elif", "hasattr", "(", "model", ",", "'set_'", "+", "propert...	34.722222	11.277778
def filter(self, relation_id=None, duedate__lt=None, duedate__gte=None, **kwargs): """ A common query would be duedate__lt=date(2015, 1, 1) to get all Receivables that are due in 2014 and earlier. """ if relation_id is not None: # Filter by (relation) a...	[ "def", "filter", "(", "self", ",", "relation_id", "=", "None", ",", "duedate__lt", "=", "None", ",", "duedate__gte", "=", "None", ",", "", "", "kwargs", ")", ":", "if", "relation_id", "is", "not", "None", ":", "# Filter by (relation) account_id. There doesn'...	43.896552	20.517241
def default_formatter(error): """Escape the error, and wrap it in a span with class ``error-message``""" quoted = formencode.htmlfill.escape_formatter(error) return u'<span class="error-message">{0}</span>'.format(quoted)	[ "def", "default_formatter", "(", "error", ")", ":", "quoted", "=", "formencode", ".", "htmlfill", ".", "escape_formatter", "(", "error", ")", "return", "u'<span class=\"error-message\">{0}</span>'", ".", "format", "(", "quoted", ")" ]	57.5	13.5
def read(self, input_buffer, kmip_version=enums.KMIPVersion.KMIP_1_3): """ Read the data encoding the ValidationInformation structure and decode it into its constituent parts. Args: input_buffer (stream): A data stream containing encoded object data, supporti...	[ "def", "read", "(", "self", ",", "input_buffer", ",", "kmip_version", "=", "enums", ".", "KMIPVersion", ".", "KMIP_1_3", ")", ":", "if", "kmip_version", "<", "enums", ".", "KMIPVersion", ".", "KMIP_1_3", ":", "raise", "exceptions", ".", "VersionNotSupported", ...	37.837989	20.206704
def clean_source_index(self): """ Cleanup broken symbolic links in the local source distribution index. The purpose of this method requires some context to understand. Let me preface this by stating that I realize I'm probably overcomplicating things, but I like to preserve forw...	[ "def", "clean_source_index", "(", "self", ")", ":", "cleanup_timer", "=", "Timer", "(", ")", "cleanup_counter", "=", "0", "for", "entry", "in", "os", ".", "listdir", "(", "self", ".", "config", ".", "source_index", ")", ":", "pathname", "=", "os", ".", ...	57.571429	29.730159
def rename_motifs(motifs, stats=None): """Rename motifs to GimmeMotifs_1..GimmeMotifs_N. If stats object is passed, stats will be copied.""" final_motifs = [] for i, motif in enumerate(motifs): old = str(motif) motif.id = "GimmeMotifs_{}".format(i + 1) final_motifs.append(mo...	[ "def", "rename_motifs", "(", "motifs", ",", "stats", "=", "None", ")", ":", "final_motifs", "=", "[", "]", "for", "i", ",", "motif", "in", "enumerate", "(", "motifs", ")", ":", "old", "=", "str", "(", "motif", ")", "motif", ".", "id", "=", "\"Gimme...	29.3125	14.6875
def as_labeller(x, default=label_value, multi_line=True): """ Coerse to labeller function Parameters ---------- x : function \| dict Object to coerce default : function \| str Default labeller. If it is a string, it should be the name of one the labelling functions...	[ "def", "as_labeller", "(", "x", ",", "default", "=", "label_value", ",", "multi_line", "=", "True", ")", ":", "if", "x", "is", "None", ":", "x", "=", "default", "# One of the labelling functions as string", "with", "suppress", "(", "KeyError", ",", "TypeError"...	27.574074	15.907407
def set_version(self, version, force=True): """ Sets the version name for the current state of repo """ if version in self.versions: self._version = version if 'working' in self.repo.branch().stdout: if force: logger.info('Found working branch...	[ "def", "set_version", "(", "self", ",", "version", ",", "force", "=", "True", ")", ":", "if", "version", "in", "self", ".", "versions", ":", "self", ".", "_version", "=", "version", "if", "'working'", "in", "self", ".", "repo", ".", "branch", "(", ")...	49.222222	25.944444
def _work(self, backend, package, ident='', log=True): """ Centralized task worker code. Used internally, see send_signal() and work() for the external interfaces. """ num = self._sending_task(backend) if log: self.log(INFO, 'Starting %s backend task #%s (%s)...	[ "def", "_work", "(", "self", ",", "backend", ",", "package", ",", "ident", "=", "''", ",", "log", "=", "True", ")", ":", "num", "=", "self", ".", "_sending_task", "(", "backend", ")", "if", "log", ":", "self", ".", "log", "(", "INFO", ",", "'Star...	35.4375	14.375
def sixteen_oscillator_two_stimulated_ensembles_grid(): "Not accurate false due to spikes are observed" parameters = legion_parameters(); parameters.teta_x = -1.1; template_dynamic_legion(16, 2000, 1500, conn_type = conn_type.GRID_FOUR, params = parameters, stimulus = [1, 1, 1, 0, ...	[ "def", "sixteen_oscillator_two_stimulated_ensembles_grid", "(", ")", ":", "parameters", "=", "legion_parameters", "(", ")", "parameters", ".", "teta_x", "=", "-", "1.1", "template_dynamic_legion", "(", "16", ",", "2000", ",", "1500", ",", "conn_type", "=", "conn_t...	83.5	46.5
def send_query(self, ID, methodname, args, *kwargs): """将调用请求的ID,方法名,参数包装为请求数据后编码为字节串发送出去. Parameters: ID (str): - 任务ID methodname (str): - 要调用的方法名 args (Any): - 要调用的方法的位置参数 kwargs (Any): - 要调用的方法的关键字参数 Return: (bool): - 准确地说没有错误就会...	[ "def", "send_query", "(", "self", ",", "ID", ",", "methodname", ",", "", "args", ",", "", "", "kwargs", ")", ":", "query", "=", "self", ".", "_make_query", "(", "ID", ",", "methodname", ",", "", "args", ",", "", "", "kwargs", ")", "self", "...	25.941176	17.235294
def map(cls, x, palette, limits, na_value=None): """ Map values to a discrete palette Parameters ---------- palette : callable ``f(x)`` palette to use x : array_like Continuous values to scale na_value : object Value to use for...	[ "def", "map", "(", "cls", ",", "x", ",", "palette", ",", "limits", ",", "na_value", "=", "None", ")", ":", "n", "=", "len", "(", "limits", ")", "pal", "=", "palette", "(", "n", ")", "[", "match", "(", "x", ",", "limits", ")", "]", "try", ":",...	25.307692	15.692308
def start(name, call=None): ''' Start a node CLI Examples: .. code-block:: bash salt-cloud -a start myinstance ''' if call != 'action': raise SaltCloudSystemExit( 'The stop action must be called with -a or --action.' ) log.info('Starting node %s', name...	[ "def", "start", "(", "name", ",", "call", "=", "None", ")", ":", "if", "call", "!=", "'action'", ":", "raise", "SaltCloudSystemExit", "(", "'The stop action must be called with -a or --action.'", ")", "log", ".", "info", "(", "'Starting node %s'", ",", "name", "...	19.75	22.833333
def download_structure(inputpdbid): """Given a PDB ID, downloads the corresponding PDB structure. Checks for validity of ID and handles error while downloading. Returns the path of the downloaded file.""" try: if len(inputpdbid) != 4 or extract_pdbid(inputpdbid.lower()) == 'UnknownProtein': ...	[ "def", "download_structure", "(", "inputpdbid", ")", ":", "try", ":", "if", "len", "(", "inputpdbid", ")", "!=", "4", "or", "extract_pdbid", "(", "inputpdbid", ".", "lower", "(", ")", ")", "==", "'UnknownProtein'", ":", "sysexit", "(", "3", ",", "'Invali...	49.647059	19.882353
def add(self, title, obj, **kwargs): """ Add a title :param title: str: The title of the menu :param obj: class or method :param kwargs: :return: """ is_class = inspect.isclass(obj) self._push(title=title, view=obj, ...	[ "def", "add", "(", "self", ",", "title", ",", "obj", ",", "", "", "kwargs", ")", ":", "is_class", "=", "inspect", ".", "isclass", "(", "obj", ")", "self", ".", "_push", "(", "title", "=", "title", ",", "view", "=", "obj", ",", "class_name", "="...	31.928571	11.642857
def transfer_and_wait( self, registry_address: PaymentNetworkID, token_address: TokenAddress, amount: TokenAmount, target: Address, identifier: PaymentID = None, transfer_timeout: int = None, secret: Secret = None, ...	[ "def", "transfer_and_wait", "(", "self", ",", "registry_address", ":", "PaymentNetworkID", ",", "token_address", ":", "TokenAddress", ",", "amount", ":", "TokenAmount", ",", "target", ":", "Address", ",", "identifier", ":", "PaymentID", "=", "None", ",", "transf...	34.6	11.52
def smart_import(mpath): """Given a path smart_import will import the module and return the attr reffered to.""" try: rest = __import__(mpath) except ImportError: split = mpath.split('.') rest = smart_import('.'.join(split[:-1])) rest = getattr(rest, split[-1]) return res...	[ "def", "smart_import", "(", "mpath", ")", ":", "try", ":", "rest", "=", "__import__", "(", "mpath", ")", "except", "ImportError", ":", "split", "=", "mpath", ".", "split", "(", "'.'", ")", "rest", "=", "smart_import", "(", "'.'", ".", "join", "(", "s...	34.777778	12.888889
def delete(self, order_id, data=None): """Cancel order and return the order object. Deleting an order causes the order status to change to canceled. The updated order object is returned. """ if not order_id or not order_id.startswith(self.RESOURCE_ID_PREFIX): raise I...	[ "def", "delete", "(", "self", ",", "order_id", ",", "data", "=", "None", ")", ":", "if", "not", "order_id", "or", "not", "order_id", ".", "startswith", "(", "self", ".", "RESOURCE_ID_PREFIX", ")", ":", "raise", "IdentifierError", "(", "\"Invalid order ID: '{...	46.461538	19.307692
def most_frequent(self, k, inplace=False): """Only most frequent k words to be included in the embeddings.""" vocabulary = self.vocabulary.most_frequent(k) vectors = np.asarray([self[w] for w in vocabulary]) if inplace: self.vocabulary = vocabulary self.vectors = vectors return self ...	[ "def", "most_frequent", "(", "self", ",", "k", ",", "inplace", "=", "False", ")", ":", "vocabulary", "=", "self", ".", "vocabulary", ".", "most_frequent", "(", "k", ")", "vectors", "=", "np", ".", "asarray", "(", "[", "self", "[", "w", "]", "for", ...	41.111111	12.444444
def __deserialize_primitive(self, data, klass): """Deserializes string to primitive type. :param data: str. :param klass: class literal. :return: int, long, float, str, bool. """ try: return klass(data) except UnicodeEncodeError: return s...	[ "def", "__deserialize_primitive", "(", "self", ",", "data", ",", "klass", ")", ":", "try", ":", "return", "klass", "(", "data", ")", "except", "UnicodeEncodeError", ":", "return", "six", ".", "text_type", "(", "data", ")", "except", "TypeError", ":", "retu...	26.785714	13.5
def histogram(self, key, dims): """Adds histogram with dimensions to the registry""" return super(MetricsRegistry, self).histogram( self.metadata.register(key, dims))	[ "def", "histogram", "(", "self", ",", "key", ",", "", "", "dims", ")", ":", "return", "super", "(", "MetricsRegistry", ",", "self", ")", ".", "histogram", "(", "self", ".", "metadata", ".", "register", "(", "key", ",", "", "", "dims", ")", ")" ...	48.75	7.25
def parse_single(str_): """ Very simple parser to parse expressions represent some single values. :param str_: a string to parse :return: Int \| Bool \| String >>> parse_single(None) '' >>> parse_single("0") 0 >>> parse_single("123") 123 >>> parse_single("True") True ...	[ "def", "parse_single", "(", "str_", ")", ":", "if", "str_", "is", "None", ":", "return", "''", "str_", "=", "str_", ".", "strip", "(", ")", "if", "not", "str_", ":", "return", "''", "if", "BOOL_PATTERN", ".", "match", "(", "str_", ")", "is", "not",...	20.613636	21.159091
def generate_tags_multiple_files_strings(input_files, ns, tag, ignore_tags): """ Creates stringified xml output of elements with certain tag. """ for el in generate_tags_multiple_files(input_files, tag, ignore_tags, ns): yield formatting.string_and_clear(el, ns)	[ "def", "generate_tags_multiple_files_strings", "(", "input_files", ",", "ns", ",", "tag", ",", "ignore_tags", ")", ":", "for", "el", "in", "generate_tags_multiple_files", "(", "input_files", ",", "tag", ",", "ignore_tags", ",", "ns", ")", ":", "yield", "formatti...	46.833333	17.833333
def generate_session_id(secret_key=settings.secret_key_bytes(), signed=settings.sign_sessions()): """Generate a random session ID. Typically, each browser tab connected to a Bokeh application has its own session ID. In production deployments of a Bokeh app, session IDs should be random and unguessable...	[ "def", "generate_session_id", "(", "secret_key", "=", "settings", ".", "secret_key_bytes", "(", ")", ",", "signed", "=", "settings", ".", "sign_sessions", "(", ")", ")", ":", "secret_key", "=", "_ensure_bytes", "(", "secret_key", ")", "if", "signed", ":", "#...	47.724138	26.103448
def purge_queue(self, vhost, name): """ Purge all messages from a single queue. This is a convenience method so you aren't forced to supply a list containing a single tuple to the purge_queues method. :param string vhost: The vhost of the queue being purged. :param strin...	[ "def", "purge_queue", "(", "self", ",", "vhost", ",", "name", ")", ":", "vhost", "=", "quote", "(", "vhost", ",", "''", ")", "name", "=", "quote", "(", "name", ",", "''", ")", "path", "=", "Client", ".", "urls", "[", "'purge_queue'", "]", "%", "(...	36.466667	17.8
def isoline_vmag(hemi, isolines=None, surface='midgray', min_length=2, **kw): ''' isoline_vmag(hemi) calculates the visual magnification function f using the default set of iso-lines (as returned by neuropythy.vision.visual_isolines()). The hemi argument may alternately be a mesh object. isoline...	[ "def", "isoline_vmag", "(", "hemi", ",", "isolines", "=", "None", ",", "surface", "=", "'midgray'", ",", "min_length", "=", "2", ",", "", "", "kw", ")", ":", "from", "neuropythy", ".", "util", "import", "(", "curry", ",", "zinv", ")", "from", "neur...	63.5	29.62
def send(self, sock, msg): """Send ``msg`` to destination ``sock``.""" data = pickle.dumps(msg) buf = struct.pack('>I', len(data)) + data sock.sendall(buf)	[ "def", "send", "(", "self", ",", "sock", ",", "msg", ")", ":", "data", "=", "pickle", ".", "dumps", "(", "msg", ")", "buf", "=", "struct", ".", "pack", "(", "'>I'", ",", "len", "(", "data", ")", ")", "+", "data", "sock", ".", "sendall", "(", ...	33.4	10
def get_by_id(self, reply_id): ''' Get the reply by id. ''' reply = MReply.get_by_uid(reply_id) logger.info('get_reply: {0}'.format(reply_id)) self.render('misc/reply/show_reply.html', reply=reply, username=reply.user_name, ...	[ "def", "get_by_id", "(", "self", ",", "reply_id", ")", ":", "reply", "=", "MReply", ".", "get_by_uid", "(", "reply_id", ")", "logger", ".", "info", "(", "'get_reply: {0}'", ".", "format", "(", "reply_id", ")", ")", "self", ".", "render", "(", "'misc/repl...	31.933333	12.6
def confirm(question: str, default: bool = True) -> bool: """ Requests confirmation of the specified question and returns that result :param question: The question to print to the console for the confirmation :param default: The default value if the user hits enter without entering a va...	[ "def", "confirm", "(", "question", ":", "str", ",", "default", ":", "bool", "=", "True", ")", "->", "bool", ":", "result", "=", "input", "(", "'{question} [{yes}/{no}]:'", ".", "format", "(", "question", "=", "question", ",", "yes", "=", "'(Y)'", "if", ...	27.318182	21.227273
def CheckHost(host_data, os_name=None, cpe=None, labels=None, exclude_checks=None, restrict_checks=None): """Perform all checks on a host using acquired artifacts. Checks are selected based on the artifacts available and the host attributes (e...	[ "def", "CheckHost", "(", "host_data", ",", "os_name", "=", "None", ",", "cpe", "=", "None", ",", "labels", "=", "None", ",", "exclude_checks", "=", "None", ",", "restrict_checks", "=", "None", ")", ":", "# Get knowledgebase, os_name from hostdata", "kb", "=", ...	33.288462	22.173077
def discard(self, pid=None): """Discard deposit changes. #. The signal :data:`invenio_records.signals.before_record_update` is sent before the edit execution. #. It restores the last published version. #. The following meta information are saved inside the deposit: ...	[ "def", "discard", "(", "self", ",", "pid", "=", "None", ")", ":", "pid", "=", "pid", "or", "self", ".", "pid", "with", "db", ".", "session", ".", "begin_nested", "(", ")", ":", "before_record_update", ".", "send", "(", "current_app", ".", "_get_current...	32.275	21.475
def call(cmd_args, suppress_output=False): """ Call an arbitary command and return the exit value, stdout, and stderr as a tuple Command can be passed in as either a string or iterable >>> result = call('hatchery', suppress_output=True) >>> result.exitval 0 >>> result = call(['hatchery', 'notr...	[ "def", "call", "(", "cmd_args", ",", "suppress_output", "=", "False", ")", ":", "if", "not", "funcy", ".", "is_list", "(", "cmd_args", ")", "and", "not", "funcy", ".", "is_tuple", "(", "cmd_args", ")", ":", "cmd_args", "=", "shlex", ".", "split", "(", ...	38.85	20.15
def _StructPackDecoder(wire_type, format): """Return a constructor for a decoder for a fixed-width field. Args: wire_type: The field's wire type. format: The format string to pass to struct.unpack(). """ value_size = struct.calcsize(format) local_unpack = struct.unpack # Reusing _SimpleDeco...	[ "def", "_StructPackDecoder", "(", "wire_type", ",", "format", ")", ":", "value_size", "=", "struct", ".", "calcsize", "(", "format", ")", "local_unpack", "=", "struct", ".", "unpack", "# Reusing _SimpleDecoder is slightly slower than copying a bunch of code, but", "# not ...	34.73913	19.217391
def confirm_project_avatar(self, project, cropping_properties): """Confirm the temporary avatar image previously uploaded with the specified cropping. After a successful registry with :py:meth:`create_temp_project_avatar`, use this method to confirm the avatar for use. The final avatar can be a...	[ "def", "confirm_project_avatar", "(", "self", ",", "project", ",", "cropping_properties", ")", ":", "data", "=", "cropping_properties", "url", "=", "self", ".", "_get_url", "(", "'project/'", "+", "project", "+", "'/avatar'", ")", "r", "=", "self", ".", "_se...	52.470588	31.117647
def create_git_tag(self, tag, message, object, type, tagger=github.GithubObject.NotSet): """ :calls: `POST /repos/:owner/:repo/git/tags <http://developer.github.com/v3/git/tags>`_ :param tag: string :param message: string :param object: string :param type: string ...	[ "def", "create_git_tag", "(", "self", ",", "tag", ",", "message", ",", "object", ",", "type", ",", "tagger", "=", "github", ".", "GithubObject", ".", "NotSet", ")", ":", "assert", "isinstance", "(", "tag", ",", "(", "str", ",", "unicode", ")", ")", "...	42.896552	19.241379
def readInputFile(self, card_name, directory, session, spatial=False, spatialReferenceID=None, **kwargs): """ Read specific input file for a GSSHA project to the database. Args: card_name(str): Name of GSSHA project card. directory (str): Directory ...	[ "def", "readInputFile", "(", "self", ",", "card_name", ",", "directory", ",", "session", ",", "spatial", "=", "False", ",", "spatialReferenceID", "=", "None", ",", "", "", "kwargs", ")", ":", "self", ".", "project_directory", "=", "directory", "with", "t...	56.961538	31.653846
def parse_hpo_genes(hpo_lines): """Parse HPO gene information Args: hpo_lines(iterable(str)) Returns: diseases(dict): A dictionary with hgnc symbols as keys """ LOG.info("Parsing HPO genes ...") genes = {} for index, line in enumerate(hpo_lines):...	[ "def", "parse_hpo_genes", "(", "hpo_lines", ")", ":", "LOG", ".", "info", "(", "\"Parsing HPO genes ...\"", ")", "genes", "=", "{", "}", "for", "index", ",", "line", "in", "enumerate", "(", "hpo_lines", ")", ":", "# First line is header", "if", "index", "=="...	32.555556	14.155556
def clean_up(self, dry_run=False, verbosity=1, last_n_days=0, cleanup_path=None, storage=None): """ Iterate through sources. Delete database references to sources not existing, including its corresponding thumbnails (files and database references). """ if...	[ "def", "clean_up", "(", "self", ",", "dry_run", "=", "False", ",", "verbosity", "=", "1", ",", "last_n_days", "=", "0", ",", "cleanup_path", "=", "None", ",", "storage", "=", "None", ")", ":", "if", "dry_run", ":", "print", "(", "\"Dry run...\"", ")", ...	38.901961	20.470588
def pop(self): """ Removes the top process from the queue, and resumes its execution. For an empty queue, this method is a no-op. This method may be invoked from anywhere (its use is not confined to processes, as method `join()` is). """ if not self.is_empty(): _, pro...	[ "def", "pop", "(", "self", ")", ":", "if", "not", "self", ".", "is_empty", "(", ")", ":", "_", ",", "process", "=", "heappop", "(", "self", ".", "_waiting", ")", "if", "_logger", "is", "not", "None", ":", "self", ".", "_log", "(", "INFO", ",", ...	47.2	23.4
def detect_deprecation_in_expression(self, expression): """ Detects if an expression makes use of any deprecated standards. Returns: list of tuple: (detecting_signature, original_text, recommended_text)""" # Perform analysis on this expression export = ExportValues(expressio...	[ "def", "detect_deprecation_in_expression", "(", "self", ",", "expression", ")", ":", "# Perform analysis on this expression", "export", "=", "ExportValues", "(", "expression", ")", "export_values", "=", "export", ".", "result", "(", ")", "# Define our results list", "re...	39.952381	18.190476
def rescale_around1(self, times): """ Suggests a rescaling factor and new physical time unit to balance the given time multiples around 1. Parameters ---------- times : float array array of times in multiple of the present elementary unit """ if self...	[ "def", "rescale_around1", "(", "self", ",", "times", ")", ":", "if", "self", ".", "_unit", "==", "self", ".", "_UNIT_STEP", ":", "return", "times", ",", "'step'", "# nothing to do", "m", "=", "np", ".", "mean", "(", "times", ")", "mult", "=", "1.0", ...	31.424242	20.878788
def fetch(self, recursive=1, fields=None, detail=None, filters=None, parent_uuid=None, back_refs_uuid=None): """ Fetch collection from API server :param recursive: level of recursion :type recursive: int :param fields: fetch only listed fields. ...	[ "def", "fetch", "(", "self", ",", "recursive", "=", "1", ",", "fields", "=", "None", ",", "detail", "=", "None", ",", "filters", "=", "None", ",", "parent_uuid", "=", "None", ",", "back_refs_uuid", "=", "None", ")", ":", "params", "=", "self", ".", ...	45.770833	20.229167
def _update_fields_with_objects(self): """ Convert dict fields into objects, where appropriate """ # Update the cover with a photo object if isinstance(self.cover, dict): self.cover = Photo(self._client, self.cover) # Update the photo list with photo objects try: ...	[ "def", "_update_fields_with_objects", "(", "self", ")", ":", "# Update the cover with a photo object", "if", "isinstance", "(", "self", ".", "cover", ",", "dict", ")", ":", "self", ".", "cover", "=", "Photo", "(", "self", ".", "_client", ",", "self", ".", "c...	40.384615	12.769231
def security_rule_delete(security_rule, security_group, resource_group, **kwargs): ''' .. versionadded:: 2019.2.0 Delete a security rule within a specified security group. :param name: The name of the security rule to delete. :param security_group: The network security gr...	[ "def", "security_rule_delete", "(", "security_rule", ",", "security_group", ",", "resource_group", ",", "", "", "kwargs", ")", ":", "result", "=", "False", "netconn", "=", "__utils__", "[", "'azurearm.get_client'", "]", "(", "'network'", ",", "", "", "kwar...	28.861111	25.75
def parse_tables(self, markup): """ Returns a list of tables in the markup. A Wikipedia table looks like: {\| border="1" \|- \|Cell 1 (no modifier - not aligned) \|- \|align="right" \|Cell 2 (right aligned) \|- \|} """ tables = ...	[ "def", "parse_tables", "(", "self", ",", "markup", ")", ":", "tables", "=", "[", "]", "m", "=", "re", ".", "findall", "(", "self", ".", "re", "[", "\"table\"", "]", ",", "markup", ")", "for", "chunk", "in", "m", ":", "table", "=", "WikipediaTable",...	32.980392	15.294118
def union_with_variable(self, variable: str, replacement: VariableReplacement) -> 'Substitution': """Try to create a new substitution with the given variable added. See :meth:`try_add_variable` for a version of this method that modifies the substitution in place. Args: vari...	[ "def", "union_with_variable", "(", "self", ",", "variable", ":", "str", ",", "replacement", ":", "VariableReplacement", ")", "->", "'Substitution'", ":", "new_subst", "=", "Substitution", "(", "self", ")", "new_subst", ".", "try_add_variable", "(", "variable", "...	36.26087	24.217391

def prepare_env(gdef='', gvars={}, extra_vars={}, host='localhost'): '''clear current sos_dict, execute global_def (definitions and imports), and inject global variables''' env.sos_dict.clear() if not gdef and not gvars: # SoS Notebook calls prepare_env without global statement from a #...

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45.711864

22.186441

def otsu(data, min_threshold=None, max_threshold=None,bins=256): """Compute a threshold using Otsu's method data - an array of intensity values between zero and one min_threshold - only consider thresholds above this minimum value max_threshold - only consider thresholds below this maxi...

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40.563636

18.4

def configure(obj, token): """Use this command to configure API tokens """ config = obj.get('config') or FileConfig(obj['profile']) config.auth_token = token config.save()

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31

11.333333

def cartesian_cs(self): """The :class:`CartesianCS` which describes the coordinate axes.""" cs = self.element.find(GML_NS + 'cartesianCS') href = cs.attrib[XLINK_NS + 'href'] return get(href)

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43.8

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def save_file(self, title="Save As", initialDir="~", fileTypes="*|All Files", rememberAs=None, **kwargs): """ Show a Save As dialog Usage: C{dialog.save_file(title="Save As", initialDir="~", fileTypes="*|All Files", rememberAs=None, **kwargs)} @param title: window title...

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54.705882

30.941176

def copy_location(new_node, old_node): """ Copy the source location hint (`lineno` and `col_offset`) from the old to the new node if possible and return the new one. """ for attr in 'lineno', 'col_offset': if attr in old_node._attributes and attr in new_node._attributes \ and hasa...

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41.2

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def loop(self, timeout = 1): """Main loop.""" rlist = [self.sock] wlist = [] if len(self.out_packet) > 0: wlist.append(self.sock) to_read, to_write, _ = select.select(rlist, wlist, [], timeout) if len(to_read) > 0: ret, _ = self.loop_read...

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26.636364

15.454545

def create_eager_metrics_for_problem(problem, model_hparams): """See create_eager_metrics.""" metric_fns = problem.eval_metric_fns(model_hparams) problem_hparams = problem.get_hparams(model_hparams) target_modality = problem_hparams.modality["targets"] weights_fn = model_hparams.weights_fn.get( "targets...

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48.666667

14.777778

def _draw_breakpoint_icon(self, top, painter, icon_name): """Draw the given breakpoint pixmap. Args: top (int): top of the line to draw the breakpoint icon. painter (QPainter) icon_name (srt): key of icon to draw (see: self.icons) """ rect = QRect(0, ...

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36.6875

16.5

def jsonex_request(url, data, headers=None): """ Make a request with JsonEx :param url: URL :type url: str :param data: Data to POST :type data: dict :return: Response :rtype: dict :raises exc.ConnectionError: Connection error :raises exc.ServerError: Remote server error (unknown) ...

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33.114286

19.142857

def from_table(fileobj=None, url='http://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/knownGene.txt.gz', parser=UCSCTable.KNOWN_GENE, mode='tx', decompress=None): ''' UCSC Genome project provides several tables with gene coordinates (https://genome.ucsc.edu/cgi-bin/hgTables), ...

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55.917808

37.178082

def _args_for_remote(self): """ Generate arguments for 'terraform remote config'. Return None if not present in configuration. :return: list of args for 'terraform remote config' or None :rtype: :std:term:`list` """ conf = self.config.get('terraform_remote_state'...

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35.8

15.4

def run(self, quil_program, classical_addresses: List[int] = None, trials=1): """ Run a Quil program multiple times, accumulating the values deposited in a list of classical addresses. :param Program quil_program: A Quil program. :param classical_addresses: The class...

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45.121212

26.272727

def go_to_column(self, column): """ Moves the text cursor to given column. :param column: Column to go to. :type column: int :return: Method success. :rtype: bool """ cursor = self.textCursor() cursor.setPosition(cursor.block().position() + colum...

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26

13.857143

def __validate(self, oid): """Validate and use the given id for this ObjectId. Raises TypeError if id is not an instance of (:class:`basestring` (:class:`str` or :class:`bytes` in python 3), ObjectId) and InvalidId if it is not a valid ObjectId. :Parameters: -...

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36.88

15.44

def initial_global_state(self) -> GlobalState: """Initialize the execution environment.""" environment = Environment( self.callee_account, self.caller, self.call_data, self.gas_price, self.call_value, self.origin, code=s...

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34.142857

14.214286

def get_content_metadata(id, version, cursor): """Return metadata related to the content from the database.""" # Do the module lookup args = dict(id=id, version=version) # FIXME We are doing two queries here that can hopefully be # condensed into one. cursor.execute(SQL['get-module-metadat...

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46.913043

20.695652

def compute(self): """ Compute a MaxSAT solution. First, the method checks whether or not the set of hard clauses is satisfiable. If not, the method returns ``False``. Otherwise, add soft clauses to the oracle and call the MaxSAT algorithm (see :func:`_compute`). ...

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37.30303

20.636364

def macro_attachment_create(self, macro_id, data, **kwargs): "https://developer.zendesk.com/rest_api/docs/core/macros#create-macro-attachment" api_path = "/api/v2/macros/{macro_id}/attachments.json" api_path = api_path.format(macro_id=macro_id) return self.call(api_path, method="POST", d...

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67

27

def add_to_fields(self): '''Add this :class:`Field` to the fields of :attr:`model`.''' meta = self.model._meta meta.scalarfields.append(self) if self.index: meta.indices.append(self)

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36.833333

12.833333

def create_project(self, project_name, project_des): """ Create a project Unsuccessful opertaion will cause an LogException. :type project_name: string :param project_name: the Project name :type project_des: string :param project_des: the description of a proj...

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32.916667

22.291667

def open(self): """ Opens a WinDivert handle for the given filter. Unless otherwise specified by flags, any packet that matches the filter will be diverted to the handle. Diverted packets can be read by the application with receive(). The remapped function is WinDivertOpen:: ...

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40.904762

23.190476

def declination_cooper69(dayofyear): """ Solar declination from Duffie & Beckman [1] and attributed to Cooper (1969) .. warning:: Return units are radians, not degrees. Declination can be expressed using either sine or cosine: .. math:: \\delta = 23.45 \\sin \\left( \\frac{2 \\pi}...

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29.953488

26.325581

def shorten_string(string, max_width): ''' make limited length string in form: "the string is very lo...(and 15 more)" ''' string_len = len(string) if string_len <= max_width: return string visible = max_width - 16 - int(log10(string_len)) # expected suffix len "...(and XXXXX more)...

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37.533333

12.466667

def _connect(self): """ Connexion à la base XAIR """ try: # On passe par Oracle Instant Client avec le TNS ORA_FULL self.conn = cx_Oracle.connect(self._ORA_FULL) self.cursor = self.conn.cursor() print('XAIR: Connexion établie') exc...

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32.846154

13.307692

def cross_goal(state): """ The goal function for cross solving search. """ centres, edges = state for edge in edges: if "D" not in edge.facings: return False if edge["D"] != centres["D"]["D"]: return False k = ""...

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31.428571

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def query_row(stmt, args=(), factory=None): """ Execute a query. Returns the first row of the result set, or `None`. """ for row in query(stmt, args, factory): return row return None

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29.142857

12

def is_reachable_host(entity_name): ''' Returns a bool telling if the entity name is a reachable host (IPv4/IPv6/FQDN/etc). :param hostname: :return: ''' try: assert type(socket.getaddrinfo(entity_name, 0, 0, 0, 0)) == list ret = True except socket.gaierror: ret = Fal...

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25.076923

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def prepare(self, rule): """ Parse and/or compile given rule into rule tree. :param rule: Filtering grammar rule. :return: Parsed and/or compiled rule. """ if self.parser: rule = self.parser.parse(rule) if self.compiler: rule = self.compil...

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def load_plugins(self, args=None): """Load all plugins in the 'plugins' folder.""" for item in os.listdir(plugins_path): if (item.startswith(self.header) and item.endswith(".py") and item != (self.header + "plugin.py")): # Load the plug...

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def delete_lambda(awsclient, function_name, events=None, delete_logs=False): """Delete a lambda function. :param awsclient: :param function_name: :param events: list of events :param delete_logs: :return: exit_code """ if events is not None: unwire(awsclient, events, function_na...

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def element_to_objects( element: etree.ElementTree, sender: str, sender_key_fetcher:Callable[[str], str]=None, user: UserType =None, ) -> List: """Transform an Element to a list of entities recursively. Possible child entities are added to each entity ``_children`` list. :param tree: Element :...

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def predict_unseen(self, times, config): """ predict the loss of an unseen configuration Parameters: ----------- times: numpy array times where to predict the loss config: numpy array the numerical representation of th...

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def change_id(self, new_id_for_id): """ Changes the id of the specified motors (each id must be unique on the bus). """ if len(set(new_id_for_id.values())) < len(new_id_for_id): raise ValueError('each id must be unique.') for new_id in new_id_for_id.itervalues(): if self...

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def commitVCS(self, tag=None): ''' Commit the current working directory state (or do nothing if the working directory is not version controlled) ''' if not self.vcs: return self.vcs.commit(message='version %s' % tag, tag=tag)

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def get_char_type(ch): """ 0, 汉字 1, 英文字母 2. 数字 3. 其他 """ if re.match(en_p, ch): return 1 elif re.match("\d+", ch): return 2 elif re.match(re_han, ch): return 3 else: return 4

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def get_decoded_jwt(request): """ Grab jwt from jwt cookie in request if possible. Returns a decoded jwt dict if it can be found. Returns None if the jwt is not found. """ jwt_cookie = request.COOKIES.get(jwt_cookie_name(), None) if not jwt_cookie: return None return jwt_decode...

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def quoted_insert(self, e): # (C-q or C-v) u'''Add the next character typed to the line verbatim. This is how to insert key sequences like C-q, for example.''' e = self.console.getkeypress() self.insert_text(e.char)

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def export_agg_losses(ekey, dstore): """ :param ekey: export key, i.e. a pair (datastore key, fmt) :param dstore: datastore object """ dskey = ekey[0] oq = dstore['oqparam'] dt = oq.loss_dt() name, value, tags = _get_data(dstore, dskey, oq.hazard_stats().items()) writer = writers.Csv...

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def loads(cls, json_text, schema=None): """ :param str json_text: json text to be parse :param voluptuous.Schema schema: JSON schema. :return: Dictionary storing the parse results of JSON :rtype: dictionary :raises ImportError: :raises RuntimeError: :raise...

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def head_and_tail_print(self, n=5): """Display the first and last n elements of a DataFrame.""" from IPython import display display.display(display.HTML(self._head_and_tail_table(n)))

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def execution_duration(self): """ Returns total BMDS execution time, in seconds. """ duration = None if self.execution_start and self.execution_end: delta = self.execution_end - self.execution_start duration = delta.total_seconds() return duration

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def ask_overwrite(dest): """Check if file *dest* exists. If 'True', asks if the user wants to overwrite it (just remove the file for later overwrite). """ msg = "File '{}' already exists. Overwrite file?".format(dest) if os.path.exists(dest): if yes_no_query(msg): os.remove(dest...

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def is_subfeature_of (parent_property, f): """ Return true iff f is an ordinary subfeature of the parent_property's feature, or if f is a subfeature of the parent_property's feature specific to the parent_property's value. """ if __debug__: from .property import Property asse...

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def style(self, value): """ Setter for **self.__style** attribute. :param value: Attribute value. :type value: Style """ if value is not None: assert type(value) is Style, "'{0}' attribute: '{1}' type is not 'Style'!".format("style", value) style...

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def pubmed(self, pubmedid=None, hgnc_symbol=None, hgnc_identifier=None, limit=None, as_df=False): """Method to query :class:`.models.PubMed` objects in database :param pubmedid: alias symbol(s) :type pubmedid: str or tuple(str) or None :param hgnc_symbol: HGNC symbol(s) :type h...

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def _isdst(dt): """Check if date is in dst. """ if type(dt) == datetime.date: dt = datetime.datetime.combine(dt, datetime.datetime.min.time()) dtc = dt.replace(year=datetime.datetime.now().year) if time.localtime(dtc.timestamp()).tm_isdst == 1: return True return False

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def process_row(cls, data, column_map): """Process the row data from Rekall""" row = {} for key,value in data.iteritems(): if not value: value = '-' elif isinstance(value, list): value = value[1] elif isinstance(...

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async def recv(self): """ Receive the next :class:`~av.audio.frame.AudioFrame`. The base implementation just reads silence, subclass :class:`AudioStreamTrack` to provide a useful implementation. """ if self.readyState != 'live': raise MediaStreamError ...

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def refresh_styles(self): """Load all available styles""" import matplotlib.pyplot as plt self.colours = {} for style in plt.style.available: try: style_colours = plt.style.library[style]['axes.prop_cycle'] self.colours[style] = [c['color'] fo...

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def det_optimal_snrsq(self, det): """Returns the opitmal SNR squared in the given detector. Parameters ---------- det : str The name of the detector. Returns ------- float : The opimtal SNR squared. """ # try to get it fro...

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def set_dicts(self, word_dict, char_dict): """Set with custom dictionaries. :param word_dict: The word dictionary. :param char_dict: The character dictionary. """ self.word_dict = word_dict self.char_dict = char_dict

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def interpolations_to_summary(sample_ind, interpolations, first_frame, last_frame, hparams, decode_hp): """Converts interpolated frames into tf summaries. The summaries consists of: 1. Image summary corresponding to the first frame. 2. Image summary corresponding to the last f...

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def _parse_members(self, contents, module): """Extracts any module-level members from the code. They must appear before any type declalations.""" #We need to get hold of the text before the module's main CONTAINS keyword #so that we don't find variables from executables and claim them as...

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def set(self, model, property_name, value): """ Set model property to value. Use setter if possible. :param model: model object or dict :param property_name: str, name on the model :param value: mixed, a value to set :return: None """ if type(model) is dic...

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def filter(self, relation_id=None, duedate__lt=None, duedate__gte=None, **kwargs): """ A common query would be duedate__lt=date(2015, 1, 1) to get all Receivables that are due in 2014 and earlier. """ if relation_id is not None: # Filter by (relation) a...

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def default_formatter(error): """Escape the error, and wrap it in a span with class ``error-message``""" quoted = formencode.htmlfill.escape_formatter(error) return u'<span class="error-message">{0}</span>'.format(quoted)

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def read(self, input_buffer, kmip_version=enums.KMIPVersion.KMIP_1_3): """ Read the data encoding the ValidationInformation structure and decode it into its constituent parts. Args: input_buffer (stream): A data stream containing encoded object data, supporti...

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def clean_source_index(self): """ Cleanup broken symbolic links in the local source distribution index. The purpose of this method requires some context to understand. Let me preface this by stating that I realize I'm probably overcomplicating things, but I like to preserve forw...

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def rename_motifs(motifs, stats=None): """Rename motifs to GimmeMotifs_1..GimmeMotifs_N. If stats object is passed, stats will be copied.""" final_motifs = [] for i, motif in enumerate(motifs): old = str(motif) motif.id = "GimmeMotifs_{}".format(i + 1) final_motifs.append(mo...

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def as_labeller(x, default=label_value, multi_line=True): """ Coerse to labeller function Parameters ---------- x : function | dict Object to coerce default : function | str Default labeller. If it is a string, it should be the name of one the labelling functions...

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def set_version(self, version, force=True): """ Sets the version name for the current state of repo """ if version in self.versions: self._version = version if 'working' in self.repo.branch().stdout: if force: logger.info('Found working branch...

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def _work(self, backend, package, ident='', log=True): """ Centralized task worker code. Used internally, see send_signal() and work() for the external interfaces. """ num = self._sending_task(backend) if log: self.log(INFO, 'Starting %s backend task #%s (%s)...

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def sixteen_oscillator_two_stimulated_ensembles_grid(): "Not accurate false due to spikes are observed" parameters = legion_parameters(); parameters.teta_x = -1.1; template_dynamic_legion(16, 2000, 1500, conn_type = conn_type.GRID_FOUR, params = parameters, stimulus = [1, 1, 1, 0, ...

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def send_query(self, ID, methodname, *args, **kwargs): """将调用请求的ID,方法名,参数包装为请求数据后编码为字节串发送出去. Parameters: ID (str): - 任务ID methodname (str): - 要调用的方法名 args (Any): - 要调用的方法的位置参数 kwargs (Any): - 要调用的方法的关键字参数 Return: (bool): - 准确地说没有错误就会...

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def map(cls, x, palette, limits, na_value=None): """ Map values to a discrete palette Parameters ---------- palette : callable ``f(x)`` palette to use x : array_like Continuous values to scale na_value : object Value to use for...

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def start(name, call=None): ''' Start a node CLI Examples: .. code-block:: bash salt-cloud -a start myinstance ''' if call != 'action': raise SaltCloudSystemExit( 'The stop action must be called with -a or --action.' ) log.info('Starting node %s', name...

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def download_structure(inputpdbid): """Given a PDB ID, downloads the corresponding PDB structure. Checks for validity of ID and handles error while downloading. Returns the path of the downloaded file.""" try: if len(inputpdbid) != 4 or extract_pdbid(inputpdbid.lower()) == 'UnknownProtein': ...

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def add(self, title, obj, **kwargs): """ Add a title :param title: str: The title of the menu :param obj: class or method :param kwargs: :return: """ is_class = inspect.isclass(obj) self._push(title=title, view=obj, ...

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def transfer_and_wait( self, registry_address: PaymentNetworkID, token_address: TokenAddress, amount: TokenAmount, target: Address, identifier: PaymentID = None, transfer_timeout: int = None, secret: Secret = None, ...

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def smart_import(mpath): """Given a path smart_import will import the module and return the attr reffered to.""" try: rest = __import__(mpath) except ImportError: split = mpath.split('.') rest = smart_import('.'.join(split[:-1])) rest = getattr(rest, split[-1]) return res...

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def delete(self, order_id, data=None): """Cancel order and return the order object. Deleting an order causes the order status to change to canceled. The updated order object is returned. """ if not order_id or not order_id.startswith(self.RESOURCE_ID_PREFIX): raise I...

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def most_frequent(self, k, inplace=False): """Only most frequent k words to be included in the embeddings.""" vocabulary = self.vocabulary.most_frequent(k) vectors = np.asarray([self[w] for w in vocabulary]) if inplace: self.vocabulary = vocabulary self.vectors = vectors return self ...

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def __deserialize_primitive(self, data, klass): """Deserializes string to primitive type. :param data: str. :param klass: class literal. :return: int, long, float, str, bool. """ try: return klass(data) except UnicodeEncodeError: return s...

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def histogram(self, key, **dims): """Adds histogram with dimensions to the registry""" return super(MetricsRegistry, self).histogram( self.metadata.register(key, **dims))

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def parse_single(str_): """ Very simple parser to parse expressions represent some single values. :param str_: a string to parse :return: Int | Bool | String >>> parse_single(None) '' >>> parse_single("0") 0 >>> parse_single("123") 123 >>> parse_single("True") True ...

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def generate_tags_multiple_files_strings(input_files, ns, tag, ignore_tags): """ Creates stringified xml output of elements with certain tag. """ for el in generate_tags_multiple_files(input_files, tag, ignore_tags, ns): yield formatting.string_and_clear(el, ns)

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def generate_session_id(secret_key=settings.secret_key_bytes(), signed=settings.sign_sessions()): """Generate a random session ID. Typically, each browser tab connected to a Bokeh application has its own session ID. In production deployments of a Bokeh app, session IDs should be random and unguessable...

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def purge_queue(self, vhost, name): """ Purge all messages from a single queue. This is a convenience method so you aren't forced to supply a list containing a single tuple to the purge_queues method. :param string vhost: The vhost of the queue being purged. :param strin...

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def isoline_vmag(hemi, isolines=None, surface='midgray', min_length=2, **kw): ''' isoline_vmag(hemi) calculates the visual magnification function f using the default set of iso-lines (as returned by neuropythy.vision.visual_isolines()). The hemi argument may alternately be a mesh object. isoline...

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def send(self, sock, msg): """Send ``msg`` to destination ``sock``.""" data = pickle.dumps(msg) buf = struct.pack('>I', len(data)) + data sock.sendall(buf)

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def get_by_id(self, reply_id): ''' Get the reply by id. ''' reply = MReply.get_by_uid(reply_id) logger.info('get_reply: {0}'.format(reply_id)) self.render('misc/reply/show_reply.html', reply=reply, username=reply.user_name, ...

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def confirm(question: str, default: bool = True) -> bool: """ Requests confirmation of the specified question and returns that result :param question: The question to print to the console for the confirmation :param default: The default value if the user hits enter without entering a va...

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def CheckHost(host_data, os_name=None, cpe=None, labels=None, exclude_checks=None, restrict_checks=None): """Perform all checks on a host using acquired artifacts. Checks are selected based on the artifacts available and the host attributes (e...

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33.288462

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def discard(self, pid=None): """Discard deposit changes. #. The signal :data:`invenio_records.signals.before_record_update` is sent before the edit execution. #. It restores the last published version. #. The following meta information are saved inside the deposit: ...

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def call(cmd_args, suppress_output=False): """ Call an arbitary command and return the exit value, stdout, and stderr as a tuple Command can be passed in as either a string or iterable >>> result = call('hatchery', suppress_output=True) >>> result.exitval 0 >>> result = call(['hatchery', 'notr...

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38.85

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def _StructPackDecoder(wire_type, format): """Return a constructor for a decoder for a fixed-width field. Args: wire_type: The field's wire type. format: The format string to pass to struct.unpack(). """ value_size = struct.calcsize(format) local_unpack = struct.unpack # Reusing _SimpleDeco...

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34.73913

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def confirm_project_avatar(self, project, cropping_properties): """Confirm the temporary avatar image previously uploaded with the specified cropping. After a successful registry with :py:meth:`create_temp_project_avatar`, use this method to confirm the avatar for use. The final avatar can be a...

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def create_git_tag(self, tag, message, object, type, tagger=github.GithubObject.NotSet): """ :calls: `POST /repos/:owner/:repo/git/tags <http://developer.github.com/v3/git/tags>`_ :param tag: string :param message: string :param object: string :param type: string ...

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42.896552

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def readInputFile(self, card_name, directory, session, spatial=False, spatialReferenceID=None, **kwargs): """ Read specific input file for a GSSHA project to the database. Args: card_name(str): Name of GSSHA project card. directory (str): Directory ...

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56.961538

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def parse_hpo_genes(hpo_lines): """Parse HPO gene information Args: hpo_lines(iterable(str)) Returns: diseases(dict): A dictionary with hgnc symbols as keys """ LOG.info("Parsing HPO genes ...") genes = {} for index, line in enumerate(hpo_lines):...

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def clean_up(self, dry_run=False, verbosity=1, last_n_days=0, cleanup_path=None, storage=None): """ Iterate through sources. Delete database references to sources not existing, including its corresponding thumbnails (files and database references). """ if...

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def pop(self): """ Removes the top process from the queue, and resumes its execution. For an empty queue, this method is a no-op. This method may be invoked from anywhere (its use is not confined to processes, as method `join()` is). """ if not self.is_empty(): _, pro...

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47.2

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def detect_deprecation_in_expression(self, expression): """ Detects if an expression makes use of any deprecated standards. Returns: list of tuple: (detecting_signature, original_text, recommended_text)""" # Perform analysis on this expression export = ExportValues(expressio...

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def rescale_around1(self, times): """ Suggests a rescaling factor and new physical time unit to balance the given time multiples around 1. Parameters ---------- times : float array array of times in multiple of the present elementary unit """ if self...

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def fetch(self, recursive=1, fields=None, detail=None, filters=None, parent_uuid=None, back_refs_uuid=None): """ Fetch collection from API server :param recursive: level of recursion :type recursive: int :param fields: fetch only listed fields. ...

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45.770833

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def _update_fields_with_objects(self): """ Convert dict fields into objects, where appropriate """ # Update the cover with a photo object if isinstance(self.cover, dict): self.cover = Photo(self._client, self.cover) # Update the photo list with photo objects try: ...

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def security_rule_delete(security_rule, security_group, resource_group, **kwargs): ''' .. versionadded:: 2019.2.0 Delete a security rule within a specified security group. :param name: The name of the security rule to delete. :param security_group: The network security gr...

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def parse_tables(self, markup): """ Returns a list of tables in the markup. A Wikipedia table looks like: {| border="1" |- |Cell 1 (no modifier - not aligned) |- |align="right" |Cell 2 (right aligned) |- |} """ tables = ...

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def union_with_variable(self, variable: str, replacement: VariableReplacement) -> 'Substitution': """Try to create a new substitution with the given variable added. See :meth:`try_add_variable` for a version of this method that modifies the substitution in place. Args: vari...

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