kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def on_click(self, event): """ Override this method to do more interesting things with the event. """ DesktopNotification( title=event.title, body="{} until {}!".format(event.time_remaining, event.title), icon='dialog-information', urgency=1, t...	[ "def", "on_click", "(", "self", ",", "event", ")", ":", "DesktopNotification", "(", "title", "=", "event", ".", "title", ",", "body", "=", "\"{} until {}!\"", ".", "format", "(", "event", ".", "time_remaining", ",", "event", ".", "title", ")", ",", "icon...	37.888889	14.333333
def qgis_composer_html_renderer(impact_report, component): """HTML to PDF renderer using QGIS Composer. Render using qgis composer for a given impact_report data and component context for html input. :param impact_report: ImpactReport contains data about the report that is going to be generate...	[ "def", "qgis_composer_html_renderer", "(", "impact_report", ",", "component", ")", ":", "context", "=", "component", ".", "context", "# QGIS3: not used", "# qgis_composition_context = impact_report.qgis_composition_context", "# create new layout with A4 portrait page", "layout", "=...	36.986014	16.587413
def _init_weights(self, X): """Set the weights and normalize data before starting training.""" X = np.asarray(X, dtype=np.float64) if self.scaler is not None: X = self.scaler.fit_transform(X) if self.initializer is not None: self.weights = ...	[ "def", "_init_weights", "(", "self", ",", "X", ")", ":", "X", "=", "np", ".", "asarray", "(", "X", ",", "dtype", "=", "np", ".", "float64", ")", "if", "self", ".", "scaler", "is", "not", "None", ":", "X", "=", "self", ".", "scaler", ".", "fit_t...	29.066667	17.333333
def unsubscribe(self, transform="", downlink=False): """Unsubscribes from a previously subscribed stream. Note that the same values of transform and downlink must be passed in order to do the correct unsubscribe:: s.subscribe(callback,transform="if last") s.unsubscribe(transform...	[ "def", "unsubscribe", "(", "self", ",", "transform", "=", "\"\"", ",", "downlink", "=", "False", ")", ":", "streampath", "=", "self", ".", "path", "if", "downlink", ":", "streampath", "+=", "\"/downlink\"", "return", "self", ".", "db", ".", "unsubscribe", ...	40.083333	16.416667
def check_with_pyflakes(source_code, filename=None): """Check source code with pyflakes Returns an empty list if pyflakes is not installed""" try: if filename is None: filename = '<string>' try: source_code += '\n' except TypeError: # Pyth...	[ "def", "check_with_pyflakes", "(", "source_code", ",", "filename", "=", "None", ")", ":", "try", ":", "if", "filename", "is", "None", ":", "filename", "=", "'<string>'", "try", ":", "source_code", "+=", "'\\n'", "except", "TypeError", ":", "# Python 3\r", "s...	42.5625	17.833333
def delete_order_by_id(cls, order_id, **kwargs): """Delete Order Delete an instance of Order by its ID. This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async=True >>> thread = api.delete_order_by_id(order_id, async=True)...	[ "def", "delete_order_by_id", "(", "cls", ",", "order_id", ",", "", "", "kwargs", ")", ":", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'async'", ")", ":", "return", "cls", ".", "_delete_order_by_id_with_ht...	39.809524	18.571429
def deepcopy(self): """ Create a deep copy of the PolygonsOnImage object. Returns ------- imgaug.PolygonsOnImage Deep copy. """ # Manual copy is far faster than deepcopy for PolygonsOnImage, # so use manual copy here too polys = [poly...	[ "def", "deepcopy", "(", "self", ")", ":", "# Manual copy is far faster than deepcopy for PolygonsOnImage,", "# so use manual copy here too", "polys", "=", "[", "poly", ".", "deepcopy", "(", ")", "for", "poly", "in", "self", ".", "polygons", "]", "return", "PolygonsOnI...	28.714286	18.857143
def path(self, filename): ''' This returns the absolute path of a file uploaded to this set. It doesn't actually check whether said file exists. :param filename: The filename to return the path for. :param folder: The subfolder within the upload set previously used ...	[ "def", "path", "(", "self", ",", "filename", ")", ":", "if", "not", "self", ".", "backend", ".", "root", ":", "raise", "OperationNotSupported", "(", "'Direct file access is not supported by '", "+", "self", ".", "backend", ".", "__class__", ".", "__name__", ")...	40.117647	22.823529
async def create_websocket_server(sock, filter=None): # pylint: disable=W0622 """ A more low-level form of open_websocket_server. You are responsible for closing this websocket. """ ws = Websocket() await ws.start_server(sock, filter=filter) return ws	[ "async", "def", "create_websocket_server", "(", "sock", ",", "filter", "=", "None", ")", ":", "# pylint: disable=W0622", "ws", "=", "Websocket", "(", ")", "await", "ws", ".", "start_server", "(", "sock", ",", "filter", "=", "filter", ")", "return", "ws" ]	34.125	14.125
def from_hising(cls, h, J, offset=None): """Construct a binary polynomial from a higher-order Ising problem. Args: h (dict): The linear biases. J (dict): The higher-order biases. offset (optional, default=0.0): Consta...	[ "def", "from_hising", "(", "cls", ",", "h", ",", "J", ",", "offset", "=", "None", ")", ":", "poly", "=", "{", "(", "k", ",", ")", ":", "v", "for", "k", ",", "v", "in", "h", ".", "items", "(", ")", "}", "poly", ".", "update", "(", "J", ")"...	27.12	18.24
def update(self, date, data=None, inow=None): """ Update strategy. Updates prices, values, weight, etc. """ # resolve stale state self.root.stale = False # update helpers on date change # also set newpt flag newpt = False if self.now == 0: ...	[ "def", "update", "(", "self", ",", "date", ",", "data", "=", "None", ",", "inow", "=", "None", ")", ":", "# resolve stale state", "self", ".", "root", ".", "stale", "=", "False", "# update helpers on date change", "# also set newpt flag", "newpt", "=", "False"...	34.825243	15.213592
def pageassert(func): ''' Decorator that assert page number ''' @wraps(func) def wrapper(args, kwargs): if args[0] < 1 or args[0] > 40: raise ValueError('Page Number not found') return func(args, **kwargs) return wrapper	[ "def", "pageassert", "(", "func", ")", ":", "@", "wraps", "(", "func", ")", "def", "wrapper", "(", "", "args", ",", "", "*", "kwargs", ")", ":", "if", "args", "[", "0", "]", "<", "1", "or", "args", "[", "0", "]", ">", "40", ":", "raise", ...	26.7	15.9
def get_upregulated_genes_network(self) -> Graph: """Get the graph of up-regulated genes. :return Graph: Graph of up-regulated genes. """ logger.info("In get_upregulated_genes_network()") deg_graph = self.graph.copy() # deep copy graph not_diff_expr = self.graph.vs(up_...	[ "def", "get_upregulated_genes_network", "(", "self", ")", "->", "Graph", ":", "logger", ".", "info", "(", "\"In get_upregulated_genes_network()\"", ")", "deg_graph", "=", "self", ".", "graph", ".", "copy", "(", ")", "# deep copy graph", "not_diff_expr", "=", "self...	38.2	23.133333
def __retrieve(self, key): ''' Retrieve file location from cache DB ''' with self.get_conn() as conn: try: c = conn.cursor() if key is None: c.execute("SELECT value FROM cache_entries WHERE key IS NULL") else: ...	[ "def", "__retrieve", "(", "self", ",", "key", ")", ":", "with", "self", ".", "get_conn", "(", ")", "as", "conn", ":", "try", ":", "c", "=", "conn", ".", "cursor", "(", ")", "if", "key", "is", "None", ":", "c", ".", "execute", "(", "\"SELECT value...	39.947368	18.263158
def perform_action( self, action, machines, params, progress_title, success_title): """Perform the action on the set of machines.""" if len(machines) == 0: return 0 with utils.Spinner() as context: return self._async_perform_action( context, ac...	[ "def", "perform_action", "(", "self", ",", "action", ",", "machines", ",", "params", ",", "progress_title", ",", "success_title", ")", ":", "if", "len", "(", "machines", ")", "==", "0", ":", "return", "0", "with", "utils", ".", "Spinner", "(", ")", "as...	43.111111	12.666667
def transform(self, X, lenscale=None): """ Apply the random basis to X. Parameters ---------- X: ndarray (N, d) array of observations where N is the number of samples, and d is the dimensionality of X. lenscale: scalar or ndarray, optional ...	[ "def", "transform", "(", "self", ",", "X", ",", "lenscale", "=", "None", ")", ":", "N", ",", "D", "=", "X", ".", "shape", "lenscale", "=", "self", ".", "_check_dim", "(", "D", ",", "lenscale", ")", "[", ":", ",", "np", ".", "newaxis", "]", "WX"...	32.384615	21.230769
def imgAverage(images, copy=True): ''' returns an image average works on many, also unloaded images minimises RAM usage ''' i0 = images[0] out = imread(i0, dtype='float') if copy and id(i0) == id(out): out = out.copy() for i in images[1:]: out += imread...	[ "def", "imgAverage", "(", "images", ",", "copy", "=", "True", ")", ":", "i0", "=", "images", "[", "0", "]", "out", "=", "imread", "(", "i0", ",", "dtype", "=", "'float'", ")", "if", "copy", "and", "id", "(", "i0", ")", "==", "id", "(", "out", ...	22.6875	17.3125
def get_data_by_slug_or_404(model, slug, kind='', kwargs): """Wrap get_data_by_slug, abort 404 if missing data.""" data = get_data_by_slug(model, slug, kind, kwargs) if not data: abort(404) return data	[ "def", "get_data_by_slug_or_404", "(", "model", ",", "slug", ",", "kind", "=", "''", ",", "", "", "kwargs", ")", ":", "data", "=", "get_data_by_slug", "(", "model", ",", "slug", ",", "kind", ",", "", "", "kwargs", ")", "if", "not", "data", ":", ...	28	23.375
def plot_figure(array, as_subplot, units, kpc_per_arcsec, figsize, aspect, cmap, norm, norm_min, norm_max, linthresh, linscale, xticks_manual, yticks_manual): """Open a matplotlib figure and plot the array of data on it. Parameters ----------- array : data.array.scaled_array.ScaledArray...	[ "def", "plot_figure", "(", "array", ",", "as_subplot", ",", "units", ",", "kpc_per_arcsec", ",", "figsize", ",", "aspect", ",", "cmap", ",", "norm", ",", "norm_min", ",", "norm_max", ",", "linthresh", ",", "linscale", ",", "xticks_manual", ",", "yticks_manua...	55.117647	36.019608
def import_cluster_template(self, api_cluster_template, add_repositories=False): """ Create a cluster according to the provided template @param api_cluster_template: cluster template to import @param add_repositories: if true the parcels repositories in the cluster template will be added. @return: ...	[ "def", "import_cluster_template", "(", "self", ",", "api_cluster_template", ",", "add_repositories", "=", "False", ")", ":", "return", "self", ".", "_post", "(", "\"importClusterTemplate\"", ",", "ApiCommand", ",", "False", ",", "api_cluster_template", ",", "params"...	52	30.8
def _FormatDateTime(self, event): """Formats the date to a datetime object without timezone information. Note: timezone information must be removed due to lack of support by xlsxwriter and Excel. Args: event (EventObject): event. Returns: datetime.datetime\|str: date and time value or ...	[ "def", "_FormatDateTime", "(", "self", ",", "event", ")", ":", "try", ":", "datetime_object", "=", "datetime", ".", "datetime", "(", "1970", ",", "1", ",", "1", ",", "0", ",", "0", ",", "0", ",", "0", ",", "tzinfo", "=", "pytz", ".", "UTC", ")", ...	35.111111	20.62963
def extract(self, name): """Get the contents of an entry. NAME is an entry name. Return the tuple (ispkg, contents). For non-Python resoures, ispkg is meaningless (and 0). Used by the import mechanism.""" if type(name) == type(''): ndx = self.toc....	[ "def", "extract", "(", "self", ",", "name", ")", ":", "if", "type", "(", "name", ")", "==", "type", "(", "''", ")", ":", "ndx", "=", "self", ".", "toc", ".", "find", "(", "name", ")", "if", "ndx", "==", "-", "1", ":", "return", "None", "else"...	34.592593	14.407407
def list_plugins(self): """Returns a sorted list of all plugins that are available in this plugin source. This can be useful to automatically discover plugins that are available and is usually used together with :meth:`load_plugin`. """ rv = [] for _, modname, is...	[ "def", "list_plugins", "(", "self", ")", ":", "rv", "=", "[", "]", "for", "_", ",", "modname", ",", "ispkg", "in", "pkgutil", ".", "iter_modules", "(", "self", ".", "mod", ".", "__path__", ")", ":", "rv", ".", "append", "(", "modname", ")", "return...	41.5	16.8
def phylotree(self): """ Get the c++ PhyloTree object corresponding to this tree. :return: PhyloTree instance """ if not self._phylotree or self._dirty: try: if ISPY3: self._phylotree = PhyloTree(self.newick.encode(), self.rooted) ...	[ "def", "phylotree", "(", "self", ")", ":", "if", "not", "self", ".", "_phylotree", "or", "self", ".", "_dirty", ":", "try", ":", "if", "ISPY3", ":", "self", ".", "_phylotree", "=", "PhyloTree", "(", "self", ".", "newick", ".", "encode", "(", ")", "...	39.466667	18.266667
def _create_non_null_wrapper(name, t): 'creates type wrapper for non-null of given type' def __new__(cls, json_data, selection_list=None): if json_data is None: raise ValueError(name + ' received null value') return t(json_data, selection_list) def __to_graphql_input__(value, in...	[ "def", "_create_non_null_wrapper", "(", "name", ",", "t", ")", ":", "def", "__new__", "(", "cls", ",", "json_data", ",", "selection_list", "=", "None", ")", ":", "if", "json_data", "is", "None", ":", "raise", "ValueError", "(", "name", "+", "' received nul...	37.733333	17.866667
def add_interface(self, interface): """Manually add or overwrite an interface definition from an Interface object. :param interface: an Interface() object """ if not isinstance(interface, Interface): raise TypeError self._interfaces[interface.name] = interface	[ "def", "add_interface", "(", "self", ",", "interface", ")", ":", "if", "not", "isinstance", "(", "interface", ",", "Interface", ")", ":", "raise", "TypeError", "self", ".", "_interfaces", "[", "interface", ".", "name", "]", "=", "interface" ]	30.6	16.5
def request_port_forward(self, address, port, handler=None): """ Ask the server to forward TCP connections from a listening port on the server, across this SSH session. If a handler is given, that handler is called from a different thread whenever a forwarded connection arrives....	[ "def", "request_port_forward", "(", "self", ",", "address", ",", "port", ",", "handler", "=", "None", ")", ":", "if", "not", "self", ".", "active", ":", "raise", "SSHException", "(", "'SSH session not active'", ")", "address", "=", "str", "(", "address", "...	41.590909	23.5
def atlasdb_get_random_peer( con=None, path=None ): """ Select a peer from the db at random Return None if the table is empty """ ret = {} with AtlasDBOpen(con=con, path=path) as dbcon: num_peers = atlasdb_num_peers( con=con, path=path ) if num_peers is None or num_peers == 0: ...	[ "def", "atlasdb_get_random_peer", "(", "con", "=", "None", ",", "path", "=", "None", ")", ":", "ret", "=", "{", "}", "with", "AtlasDBOpen", "(", "con", "=", "con", ",", "path", "=", "path", ")", "as", "dbcon", ":", "num_peers", "=", "atlasdb_num_peers"...	25.1	18.7
def get_state_paths(cls, impl, working_dir): """ Get the set of state paths that point to the current chain and state info. Returns a list of paths. """ return [config.get_db_filename(impl, working_dir), config.get_snapshots_filename(impl, working_dir)]	[ "def", "get_state_paths", "(", "cls", ",", "impl", ",", "working_dir", ")", ":", "return", "[", "config", ".", "get_db_filename", "(", "impl", ",", "working_dir", ")", ",", "config", ".", "get_snapshots_filename", "(", "impl", ",", "working_dir", ")", "]" ]	48	20.333333
def remover(self, id_tipo_acesso): """Removes access type by its identifier. :param id_tipo_acesso: Access type identifier. :return: None :raise TipoAcessoError: Access type associated with equipment, cannot be removed. :raise InvalidParameterError: Protocol value is invalid o...	[ "def", "remover", "(", "self", ",", "id_tipo_acesso", ")", ":", "if", "not", "is_valid_int_param", "(", "id_tipo_acesso", ")", ":", "raise", "InvalidParameterError", "(", "u'Access type id is invalid or was not informed.'", ")", "url", "=", "'tipoacesso/'", "+", "str"...	38.272727	23.363636
def http_exception(channel, title): """ Creates an embed UI containing the 'too long' error message Args: channel (discord.Channel): The Discord channel to bind the embed to title (str): The title of the embed Returns: ui (ui_embed.UI): The embed UI object """ # Create...	[ "def", "http_exception", "(", "channel", ",", "title", ")", ":", "# Create embed UI object", "gui", "=", "ui_embed", ".", "UI", "(", "channel", ",", "\"Too much help\"", ",", "\"{} is too helpful! Try trimming some of the help messages.\"", ".", "format", "(", "title", ...	24.619048	22.619048
def set_key(key: str, value: str) -> dict: """Set or update a key in the conf. For now only strings are supported. We use to update the version number. """ if not _conf.path: return {} if "toml" in _conf.path: with open(_conf.path, "r") as f: parser = parse(f.read()...	[ "def", "set_key", "(", "key", ":", "str", ",", "value", ":", "str", ")", "->", "dict", ":", "if", "not", "_conf", ".", "path", ":", "return", "{", "}", "if", "\"toml\"", "in", "_conf", ".", "path", ":", "with", "open", "(", "_conf", ".", "path", ...	28.391304	11.521739
def long_press(self, on_element): """ Long press on an element. :Args: - on_element: The element to long press. """ self._actions.append(lambda: self._driver.execute( Command.LONG_PRESS, {'element': on_element.id})) return self	[ "def", "long_press", "(", "self", ",", "on_element", ")", ":", "self", ".", "_actions", ".", "append", "(", "lambda", ":", "self", ".", "_driver", ".", "execute", "(", "Command", ".", "LONG_PRESS", ",", "{", "'element'", ":", "on_element", ".", "id", "...	28.8	14.8
def _to_epoch(self, ts): """ Adds a year to the syslog timestamp because syslog doesn't use years :param ts: The timestamp to add a year to :return: Date/time string that includes a year """ year = self.year tmpts = "%s %s" % (ts, str(self.year)) new_tim...	[ "def", "_to_epoch", "(", "self", ",", "ts", ")", ":", "year", "=", "self", ".", "year", "tmpts", "=", "\"%s %s\"", "%", "(", "ts", ",", "str", "(", "self", ".", "year", ")", ")", "new_time", "=", "int", "(", "calendar", ".", "timegm", "(", "time"...	35.473684	22.631579
def trunc_list(s: List) -> List: """Truncate lists to maximum length.""" if len(s) > max_list_size: i = max_list_size // 2 j = i - 1 s = s[:i] + [ELLIPSIS] + s[-j:] return s	[ "def", "trunc_list", "(", "s", ":", "List", ")", "->", "List", ":", "if", "len", "(", "s", ")", ">", "max_list_size", ":", "i", "=", "max_list_size", "//", "2", "j", "=", "i", "-", "1", "s", "=", "s", "[", ":", "i", "]", "+", "[", "ELLIPSIS",...	29	11.428571
def xml_import(self, filepath="", xml_content=None, markings=None, identifier_ns_uri=None, **kwargs): """ Import a STIX or CybOX xml from file <filepath> or a string passed as ``xml_content`` You c...	[ "def", "xml_import", "(", "self", ",", "filepath", "=", "\"\"", ",", "xml_content", "=", "None", ",", "markings", "=", "None", ",", "identifier_ns_uri", "=", "None", ",", "", "", "kwargs", ")", ":", "# Clear internal state such that same object can be reused for...	45.679487	31.470085
def _analyze_all_function_features(self, all_funcs_completed=False): """ Iteratively analyze all changed functions, update their returning attribute, until a fix-point is reached (i.e. no new returning/not-returning functions are found). :return: None """ while True: ...	[ "def", "_analyze_all_function_features", "(", "self", ",", "all_funcs_completed", "=", "False", ")", ":", "while", "True", ":", "new_changes", "=", "self", ".", "_iteratively_analyze_function_features", "(", "all_funcs_completed", "=", "all_funcs_completed", ")", "new_r...	59.961538	39.307692
def decode_sequence(self, source_encoded: mx.sym.Symbol, source_encoded_lengths: mx.sym.Symbol, source_encoded_max_length: int, target_embed: mx.sym.Symbol, target_embed_lengths: mx.sym.Symbol, ...	[ "def", "decode_sequence", "(", "self", ",", "source_encoded", ":", "mx", ".", "sym", ".", "Symbol", ",", "source_encoded_lengths", ":", "mx", ".", "sym", ".", "Symbol", ",", "source_encoded_max_length", ":", "int", ",", "target_embed", ":", "mx", ".", "sym",...	60.15	31.35
def parse_args(): """Parser/validator for the cmd line args.""" parser = get_parser() if len(sys.argv) < 2: parser.print_help() warnings.warn('Too few arguments!', UserWarning) parser.exit(1) # parsing try: params = parser.parse_args() except Exception as exc: ...	[ "def", "parse_args", "(", ")", ":", "parser", "=", "get_parser", "(", ")", "if", "len", "(", "sys", ".", "argv", ")", "<", "2", ":", "parser", ".", "print_help", "(", ")", "warnings", ".", "warn", "(", "'Too few arguments!'", ",", "UserWarning", ")", ...	33.962963	24.888889
def get_meta_content(self, metaName): """\ Extract a given meta content form document """ meta = self.parser.css_select(self.article.doc, metaName) content = None if meta is not None and len(meta) > 0: content = self.parser.getAttribute(meta[0], 'content') ...	[ "def", "get_meta_content", "(", "self", ",", "metaName", ")", ":", "meta", "=", "self", ".", "parser", ".", "css_select", "(", "self", ".", "article", ".", "doc", ",", "metaName", ")", "content", "=", "None", "if", "meta", "is", "not", "None", "and", ...	27.071429	18.428571
def _generate_validation_scripts(self): """ Include the scripts used by solutions. """ id_script_list_validation_fields = ( AccessibleFormImplementation.ID_SCRIPT_LIST_VALIDATION_FIELDS ) local = self.parser.find('head,body').first_result() if local i...	[ "def", "_generate_validation_scripts", "(", "self", ")", ":", "id_script_list_validation_fields", "=", "(", "AccessibleFormImplementation", ".", "ID_SCRIPT_LIST_VALIDATION_FIELDS", ")", "local", "=", "self", ".", "parser", ".", "find", "(", "'head,body'", ")", ".", "f...	39.317308	18.490385
def rescan_file(self, filename, sha256hash, apikey): """ just send the hash, check the date """ url = self.base_url + "file/rescan" params = { 'apikey': apikey, 'resource': sha256hash } rate_limit_clear = self.rate_limit() if rate_...	[ "def", "rescan_file", "(", "self", ",", "filename", ",", "sha256hash", ",", "apikey", ")", ":", "url", "=", "self", ".", "base_url", "+", "\"file/rescan\"", "params", "=", "{", "'apikey'", ":", "apikey", ",", "'resource'", ":", "sha256hash", "}", "rate_lim...	40.45	19.75
def _add_converted_units(self, dataframe, parameter, key='VALUE'): """Add an additional DATA_VALUE column with converted VALUEs""" convert_unit = self.parameters.get_converter(parameter) try: log.debug("Adding unit converted DATA_VALUE to the data") dataframe[key] = dataf...	[ "def", "_add_converted_units", "(", "self", ",", "dataframe", ",", "parameter", ",", "key", "=", "'VALUE'", ")", ":", "convert_unit", "=", "self", ".", "parameters", ".", "get_converter", "(", "parameter", ")", "try", ":", "log", ".", "debug", "(", "\"Addi...	51.3	22.4
def _ratelimited_get(self, args, kwargs): """Perform get request, handling rate limiting.""" with self._ratelimiter: resp = self.session.get(args, **kwargs) # It's possible that Space-Track will return HTTP status 500 with a # query rate limit violation. This can happen ...	[ "def", "_ratelimited_get", "(", "self", ",", "", "args", ",", "", "", "kwargs", ")", ":", "with", "self", ".", "_ratelimiter", ":", "resp", "=", "self", ".", "session", ".", "get", "(", "", "args", ",", "", "", "kwargs", ")", "# It's possible t...	43.518519	21.814815
def serializer_by_type_id(self, type_id): """ Find and return the serializer for the type-id :param type_id: type-id the serializer :return: the serializer """ if type_id <= 0: indx = index_for_default_type(type_id) serializer = self._constant_type...	[ "def", "serializer_by_type_id", "(", "self", ",", "type_id", ")", ":", "if", "type_id", "<=", "0", ":", "indx", "=", "index_for_default_type", "(", "type_id", ")", "serializer", "=", "self", ".", "_constant_type_ids", ".", "get", "(", "indx", ",", "None", ...	37.416667	7.916667
def crypto_sign_keypair(seed=None): """Return (verifying, secret) key from a given seed, or os.urandom(32)""" if seed is None: seed = os.urandom(PUBLICKEYBYTES) else: warnings.warn("ed25519ll should choose random seed.", RuntimeWarning) if len(seed) != 32: r...	[ "def", "crypto_sign_keypair", "(", "seed", "=", "None", ")", ":", "if", "seed", "is", "None", ":", "seed", "=", "os", ".", "urandom", "(", "PUBLICKEYBYTES", ")", "else", ":", "warnings", ".", "warn", "(", "\"ed25519ll should choose random seed.\"", ",", "Run...	39	12.583333
def main(): """Ideally we shouldn't lose the first second of events""" with Input() as input_generator: def extra_bytes_callback(string): print('got extra bytes', repr(string)) print('type:', type(string)) input_generator.unget_bytes(string) time.sleep(1) ...	[ "def", "main", "(", ")", ":", "with", "Input", "(", ")", "as", "input_generator", ":", "def", "extra_bytes_callback", "(", "string", ")", ":", "print", "(", "'got extra bytes'", ",", "repr", "(", "string", ")", ")", "print", "(", "'type:'", ",", "type", ...	41.583333	10.583333
def parameterSpace( self ): """Return the parameter space of the experiment as a list of dicts, with each dict mapping each parameter name to a value. :returns: the parameter space as a list of dicts""" ps = self.parameters() if len(ps) == 0: return [] else: ...	[ "def", "parameterSpace", "(", "self", ")", ":", "ps", "=", "self", ".", "parameters", "(", ")", "if", "len", "(", "ps", ")", "==", "0", ":", "return", "[", "]", "else", ":", "return", "self", ".", "_crossProduct", "(", "ps", ")" ]	35.2	14.8
def add(self, name, definition): """ Register a definition to the registry. Existing definitions are replaced silently. :param name: The name which can be used as reference in a validation schema. :type name: :class:`str` :param definition: The definition. ...	[ "def", "add", "(", "self", ",", "name", ",", "definition", ")", ":", "self", ".", "_storage", "[", "name", "]", "=", "self", ".", "_expand_definition", "(", "definition", ")" ]	42.5	14.5
def get_supported_metrics_topic(self, name, topic_name): ''' Retrieves the list of supported metrics for this namespace and topic name: Name of the service bus namespace. topic_name: Name of the service bus queue in this namespace. ''' response = ...	[ "def", "get_supported_metrics_topic", "(", "self", ",", "name", ",", "topic_name", ")", ":", "response", "=", "self", ".", "_perform_get", "(", "self", ".", "_get_get_supported_metrics_topic_path", "(", "name", ",", "topic_name", ")", ",", "None", ")", "return",...	32.65	23.55
async def restore_storage_configuration(self): """ Restore machine's storage configuration to its initial state. """ self._data = await self._handler.restore_storage_configuration( system_id=self.system_id)	[ "async", "def", "restore_storage_configuration", "(", "self", ")", ":", "self", ".", "_data", "=", "await", "self", ".", "_handler", ".", "restore_storage_configuration", "(", "system_id", "=", "self", ".", "system_id", ")" ]	40.833333	11.5
def call_parallel(self, cdata, low): ''' Call the state defined in the given cdata in parallel ''' # There are a number of possibilities to not have the cdata # populated with what we might have expected, so just be smart # enough to not raise another KeyError as the name...	[ "def", "call_parallel", "(", "self", ",", "cdata", ",", "low", ")", ":", "# There are a number of possibilities to not have the cdata", "# populated with what we might have expected, so just be smart", "# enough to not raise another KeyError as the name is easily", "# guessable and fallbac...	40.565217	19.26087
def _prompt_placement(D, tt): """ Since automatic placement didn't work, find somewhere to place the model data manually with the help of the user. :param dict D: Metadata :param str tt: Table type :return str _model_name: Chosen model name for placement """ _model_name = "" # There was...	[ "def", "_prompt_placement", "(", "D", ",", "tt", ")", ":", "_model_name", "=", "\"\"", "# There wasn't a table name match, so we need prompts to fix it", "_placement_options", "=", "_get_available_placements", "(", "D", ",", "tt", ")", "print", "(", "\"Please choose where...	37.142857	18.928571
def execute(helper, config, args): """ Deletes an environment """ env_config = parse_env_config(config, args.environment) environments_to_wait_for_term = [] environments = helper.get_environments() for env in environments: if env['EnvironmentName'] == args.environment: ...	[ "def", "execute", "(", "helper", ",", "config", ",", "args", ")", ":", "env_config", "=", "parse_env_config", "(", "config", ",", "args", ".", "environment", ")", "environments_to_wait_for_term", "=", "[", "]", "environments", "=", "helper", ".", "get_environm...	36.222222	18.592593
def get(self, model_module, model_module_version, model_name, view_module, view_module_version, view_name): """Get a value""" module_versions = self._registry[model_module] # The python semver module doesn't work well, for example, it can't do match('3', '*') # so we just take the first ...	[ "def", "get", "(", "self", ",", "model_module", ",", "model_module_version", ",", "model_name", ",", "view_module", ",", "view_module_version", ",", "view_name", ")", ":", "module_versions", "=", "self", ".", "_registry", "[", "model_module", "]", "# The python se...	60.75	23.3125
def _extract_tag_from_data(self, data, tag_name=b'packet'): """Gets data containing a (part of) tshark xml. If the given tag is found in it, returns the tag data and the remaining data. Otherwise returns None and the same data. :param data: string of a partial tshark xml. :retu...	[ "def", "_extract_tag_from_data", "(", "self", ",", "data", ",", "tag_name", "=", "b'packet'", ")", ":", "opening_tag", "=", "b'<'", "+", "tag_name", "+", "b'>'", "closing_tag", "=", "opening_tag", ".", "replace", "(", "b'<'", ",", "b'</'", ")", "tag_end", ...	42.176471	16.058824
def default_value(self, type_name): ''' Obtain the default value for some type name. ''' uname = type_name.upper() if uname == 'BOOLEAN': return False elif uname == 'INTEGER': return 0 elif uname == 'REAL': ...	[ "def", "default_value", "(", "self", ",", "type_name", ")", ":", "uname", "=", "type_name", ".", "upper", "(", ")", "if", "uname", "==", "'BOOLEAN'", ":", "return", "False", "elif", "uname", "==", "'INTEGER'", ":", "return", "0", "elif", "uname", "==", ...	27.083333	17.916667
def dumps(data, escape=False, **kwargs): """A wrapper around `json.dumps` that can handle objects that json module is not aware. This function is aware of a list of custom serializers that can be registered by the API user, making it possible to convert any kind of object to types that the json lib...	[ "def", "dumps", "(", "data", ",", "escape", "=", "False", ",", "", "", "kwargs", ")", ":", "if", "'sort_keys'", "not", "in", "kwargs", ":", "kwargs", "[", "'sort_keys'", "]", "=", "True", "converted", "=", "json", ".", "dumps", "(", "data", ",", ...	43.363636	22.045455
def getResults(self, parFound = None): ''' Function to obtain the Dictionarythat represents this object. :param parFound: values to return. :return: The output format will be like: [{"type" : "i3visio.email", "value": "foo@bar.com", "attri...	[ "def", "getResults", "(", "self", ",", "parFound", "=", "None", ")", ":", "# Defining a dictionary", "results", "=", "[", "]", "# Defining a dictionary inside with a couple of fields: reg_exp for the regular expression and found_exp for the expressions found.", "#results[self.name] =...	46.681818	26.136364
def example_2_load_data(self): """ 加载数据 """ # 权重向量, w1代表神经网络的第一层，w2代表神经网络的第二层 self.w1 = Variable(random_normal([2, 3], stddev=1, seed=1)) self.w2 = Variable(random_normal([3, 1], stddev=1, seed=1)) # 特征向量, 区别是，这里不会在计算图中生成节点 #self.x = placeholder(float32, s...	[ "def", "example_2_load_data", "(", "self", ")", ":", "# 权重向量, w1代表神经网络的第一层，w2代表神经网络的第二层", "self", ".", "w1", "=", "Variable", "(", "random_normal", "(", "[", "2", ",", "3", "]", ",", "stddev", "=", "1", ",", "seed", "=", "1", ")", ")", "self", ".", "w2...	40.3	15.1
def list_domains(): ''' Return a list of virtual machine names on the minion CLI Example: .. code-block:: bash salt '*' virt.list_domains ''' data = __salt__['vmadm.list'](keyed=True) vms = ["UUID TYPE RAM STATE ALIAS"] for vm...	[ "def", "list_domains", "(", ")", ":", "data", "=", "__salt__", "[", "'vmadm.list'", "]", "(", "keyed", "=", "True", ")", "vms", "=", "[", "\"UUID TYPE RAM STATE ALIAS\"", "]", "for", "vm", "in", "data", ":", "vms"...	29.380952	21.761905
def parse_input_file(text, variables=None): """ Parser for a file with syntax somewhat similar to Drake.""" text = find_includes(text) lines = text.splitlines() tasks, linenumbers = find_tasks(lines) preamble = [line for line in lines[:linenumbers[0]]] logging.debug("Preamble:\n{}".format("\n".j...	[ "def", "parse_input_file", "(", "text", ",", "variables", "=", "None", ")", ":", "text", "=", "find_includes", "(", "text", ")", "lines", "=", "text", ".", "splitlines", "(", ")", "tasks", ",", "linenumbers", "=", "find_tasks", "(", "lines", ")", "preamb...	40.4	9.65
def movingSum(requestContext, seriesList, windowSize): """ Graphs the moving sum of a metric (or metrics) over a fixed number of past points, or a time interval. Takes one metric or a wildcard seriesList followed by a number N of datapoints or a quoted string with a length of time like '1hour' or '...	[ "def", "movingSum", "(", "requestContext", ",", "seriesList", ",", "windowSize", ")", ":", "if", "not", "seriesList", ":", "return", "[", "]", "windowInterval", "=", "None", "if", "isinstance", "(", "windowSize", ",", "six", ".", "string_types", ")", ":", ...	36.222222	21.68254
def get_token(self, token): ''' Request a token from the master ''' load = {} load['token'] = token load['cmd'] = 'get_token' tdata = self._send_token_request(load) return tdata	[ "def", "get_token", "(", "self", ",", "token", ")", ":", "load", "=", "{", "}", "load", "[", "'token'", "]", "=", "token", "load", "[", "'cmd'", "]", "=", "'get_token'", "tdata", "=", "self", ".", "_send_token_request", "(", "load", ")", "return", "t...	25.888889	15.444444
def view(self, sort=None, purge=False, done=None, undone=None, **kwargs): """Handles the 'v' command. :sort: Sort pattern. :purge: Whether to purge items marked as 'done'. :done: Done pattern. :undone: Not done pattern. :kwargs: Additional arguments to pass to the View o...	[ "def", "view", "(", "self", ",", "sort", "=", "None", ",", "purge", "=", "False", ",", "done", "=", "None", ",", "undone", "=", "None", ",", "", "", "kwargs", ")", ":", "View", "(", "self", ".", "model", ".", "modify", "(", "sort", "=", "self...	32.6	15.533333
def fit(self, X, y=None, groups=None): """Run fit with all sets of parameters. Parameters ---------- X : array-like, shape = [n_samples, n_features] Training vector, where n_samples is the number of samples and n_features is the number of feature...	[ "def", "fit", "(", "self", ",", "X", ",", "y", "=", "None", ",", "groups", "=", "None", ")", ":", "return", "self", ".", "_fit", "(", "X", ",", "y", ",", "groups", ",", "ParameterGrid", "(", "self", ".", "param_grid", ")", ")" ]	40.263158	21.105263
def commit(self, offsets=None): """Commit offsets to kafka, blocking until success or error. This commits offsets only to Kafka. The offsets committed using this API will be used on the first fetch after every rebalance and also on startup. As such, if you need to store offsets in anyth...	[ "def", "commit", "(", "self", ",", "offsets", "=", "None", ")", ":", "assert", "self", ".", "config", "[", "'api_version'", "]", ">=", "(", "0", ",", "8", ",", "1", ")", ",", "'Requires >= Kafka 0.8.1'", "assert", "self", ".", "config", "[", "'group_id...	52.8	29.16
def correlate(self, signal): """ Correlate records against one or many one-dimensional arrays. Parameters ---------- signal : array-like One or more signals to correlate against. """ s = asarray(signal) if s.ndim == 1: if size(s) ...	[ "def", "correlate", "(", "self", ",", "signal", ")", ":", "s", "=", "asarray", "(", "signal", ")", "if", "s", ".", "ndim", "==", "1", ":", "if", "size", "(", "s", ")", "!=", "self", ".", "shape", "[", "-", "1", "]", ":", "raise", "ValueError", ...	37.222222	24.62963
def flatten(cls, stats): """Makes a flat statistics from the given statistics.""" flat_children = {} for _stats in spread_stats(stats): key = (_stats.name, _stats.filename, _stats.lineno, _stats.module) try: flat_stats = flat_children[key] exce...	[ "def", "flatten", "(", "cls", ",", "stats", ")", ":", "flat_children", "=", "{", "}", "for", "_stats", "in", "spread_stats", "(", "stats", ")", ":", "key", "=", "(", "_stats", ".", "name", ",", "_stats", ".", "filename", ",", "_stats", ".", "lineno",...	48.470588	14.823529
def query(database, query, client_args): ''' Execute a query. database Name of the database to query on. query InfluxQL query string. ''' client = _client(client_args) _result = client.query(query, database=database) if isinstance(_result, collections.Sequence): ...	[ "def", "query", "(", "database", ",", "query", ",", "", "", "client_args", ")", ":", "client", "=", "_client", "(", "", "", "client_args", ")", "_result", "=", "client", ".", "query", "(", "query", ",", "database", "=", "database", ")", "if", "is...	28.8125	23.8125
def _assemble_translocation(stmt): """Assemble Translocation statements into text.""" agent_str = _assemble_agent_str(stmt.agent) stmt_str = agent_str + ' translocates' if stmt.from_location is not None: stmt_str += ' from the ' + stmt.from_location if stmt.to_location is not None: s...	[ "def", "_assemble_translocation", "(", "stmt", ")", ":", "agent_str", "=", "_assemble_agent_str", "(", "stmt", ".", "agent", ")", "stmt_str", "=", "agent_str", "+", "' translocates'", "if", "stmt", ".", "from_location", "is", "not", "None", ":", "stmt_str", "+...	43.111111	5.333333
def transitively_reduce(self): """ Performs a transitive reduction on the graph. """ removals = set() for from_node, neighbors in self._edges.items(): childpairs = \ [(c1, c2) for c1 in neighbors for c2 in neighbors if c1 != c2] for child...	[ "def", "transitively_reduce", "(", "self", ")", ":", "removals", "=", "set", "(", ")", "for", "from_node", ",", "neighbors", "in", "self", ".", "_edges", ".", "items", "(", ")", ":", "childpairs", "=", "[", "(", "c1", ",", "c2", ")", "for", "c1", "...	33.647059	17.176471
def ppdict(dict_to_print, br='\n', html=False, key_align='l', sort_keys=True, key_preffix='', key_suffix='', value_prefix='', value_suffix='', left_margin=3, indent=2): """Indent representation of a dict""" if dict_to_print: if sort_keys: dic = dict_to_print.copy() key...	[ "def", "ppdict", "(", "dict_to_print", ",", "br", "=", "'\\n'", ",", "html", "=", "False", ",", "key_align", "=", "'l'", ",", "sort_keys", "=", "True", ",", "key_preffix", "=", "''", ",", "key_suffix", "=", "''", ",", "value_prefix", "=", "''", ",", ...	37.351351	24.891892
def deletesystemhook(self, hook_id): """ Delete a project hook :param hook_id: hook id :return: True if success """ data = {"id": hook_id} request = requests.delete( '{0}/{1}'.format(self.hook_url, hook_id), data=data, headers=self.header...	[ "def", "deletesystemhook", "(", "self", ",", "hook_id", ")", ":", "data", "=", "{", "\"id\"", ":", "hook_id", "}", "request", "=", "requests", ".", "delete", "(", "'{0}/{1}'", ".", "format", "(", "self", ".", "hook_url", ",", "hook_id", ")", ",", "data...	27.705882	18.176471
def _remove_processed_data( self): """remove processed data """ self.log.info('starting the ``_remove_processed_data`` method') archivePath = self.settings["atlas archive path"] from fundamentals.mysql import readquery sqlQuery = u""" select mj...	[ "def", "_remove_processed_data", "(", "self", ")", ":", "self", ".", "log", ".", "info", "(", "'starting the ``_remove_processed_data`` method'", ")", "archivePath", "=", "self", ".", "settings", "[", "\"atlas archive path\"", "]", "from", "fundamentals", ".", "mysq...	28.84127	18.904762
def get_allowed(allow, disallow): """ Normalize the given string attributes as a list of all allowed vClasses.""" if allow is None and disallow is None: return SUMO_VEHICLE_CLASSES elif disallow is None: return allow.split() else: disallow = disallow.split() return tuple(...	[ "def", "get_allowed", "(", "allow", ",", "disallow", ")", ":", "if", "allow", "is", "None", "and", "disallow", "is", "None", ":", "return", "SUMO_VEHICLE_CLASSES", "elif", "disallow", "is", "None", ":", "return", "allow", ".", "split", "(", ")", "else", ...	40.777778	12.444444
def dictionize(fields: Sequence, records: Sequence) -> Generator: """Create dictionaries mapping fields to record data.""" return (dict(zip(fields, rec)) for rec in records)	[ "def", "dictionize", "(", "fields", ":", "Sequence", ",", "records", ":", "Sequence", ")", "->", "Generator", ":", "return", "(", "dict", "(", "zip", "(", "fields", ",", "rec", ")", ")", "for", "rec", "in", "records", ")" ]	44.75	19.75
async def from_href(self): """Get the full object from spotify with a `href` attribute.""" if not hasattr(self, 'href'): raise TypeError('Spotify object has no `href` attribute, therefore cannot be retrived') elif hasattr(self, 'http'): return await self.http.request(('G...	[ "async", "def", "from_href", "(", "self", ")", ":", "if", "not", "hasattr", "(", "self", ",", "'href'", ")", ":", "raise", "TypeError", "(", "'Spotify object has no `href` attribute, therefore cannot be retrived'", ")", "elif", "hasattr", "(", "self", ",", "'http'...	32.952381	24.238095
def nalu(x, depth, epsilon=1e-30, name=None, reuse=None): """NALU as in https://arxiv.org/abs/1808.00508.""" with tf.variable_scope(name, default_name="nalu", values=[x], reuse=reuse): x_shape = shape_list(x) x_flat = tf.reshape(x, [-1, x_shape[-1]]) gw = tf.get_variable("w", [x_shape[-1], depth]) g...	[ "def", "nalu", "(", "x", ",", "depth", ",", "epsilon", "=", "1e-30", ",", "name", "=", "None", ",", "reuse", "=", "None", ")", ":", "with", "tf", ".", "variable_scope", "(", "name", ",", "default_name", "=", "\"nalu\"", ",", "values", "=", "[", "x"...	46.083333	8.25
def set_address(self, address): """ Set the address of the remote host the is contacted, without changing hostname, username, password, protocol, and TCP port number. This is the actual address that is used to open the connection. :type address: string :param ad...	[ "def", "set_address", "(", "self", ",", "address", ")", ":", "if", "is_ip", "(", "address", ")", ":", "self", ".", "address", "=", "clean_ip", "(", "address", ")", "else", ":", "self", ".", "address", "=", "address" ]	33.5	16.357143
def frequency2fractional(frequency, mean_frequency=-1): """ Convert frequency in Hz to fractional frequency Parameters ---------- frequency: np.array Data array of frequency in Hz mean_frequency: float (optional) The nominal mean frequency, in Hz if omitted, defaults to mean...	[ "def", "frequency2fractional", "(", "frequency", ",", "mean_frequency", "=", "-", "1", ")", ":", "if", "mean_frequency", "==", "-", "1", ":", "mu", "=", "np", ".", "mean", "(", "frequency", ")", "else", ":", "mu", "=", "mean_frequency", "y", "=", "[", ...	25.545455	18.545455
def get_monomers(self, ligands=True, pseudo_group=False): """Retrieves all the `Monomers` from the `Assembly` object. Parameters ---------- ligands : bool, optional If `true`, will include ligand `Monomers`. pseudo_group : bool, optional If `True`, will i...	[ "def", "get_monomers", "(", "self", ",", "ligands", "=", "True", ",", "pseudo_group", "=", "False", ")", ":", "base_filters", "=", "dict", "(", "ligands", "=", "ligands", ",", "pseudo_group", "=", "pseudo_group", ")", "restricted_mol_types", "=", "[", "x", ...	43.3125	18.0625
def valid_body_waiting(self): """ Check if a valid body is waiting in buffer """ # 0f f8 be 04 00 08 00 00 2f 04 packet_size = velbus.MINIMUM_MESSAGE_SIZE + \ (self.buffer[3] & 0x0F) if len(self.buffer) < packet_size: self.logger.debug("Buffer does...	[ "def", "valid_body_waiting", "(", "self", ")", ":", "# 0f f8 be 04 00 08 00 00 2f 04", "packet_size", "=", "velbus", ".", "MINIMUM_MESSAGE_SIZE", "+", "(", "self", ".", "buffer", "[", "3", "]", "&", "0x0F", ")", "if", "len", "(", "self", ".", "buffer", ")", ...	42.619048	16.809524
def setup(product_name): """Setup logging.""" if CONF.log_config: _load_log_config(CONF.log_config) else: _setup_logging_from_conf() sys.excepthook = _create_logging_excepthook(product_name)	[ "def", "setup", "(", "product_name", ")", ":", "if", "CONF", ".", "log_config", ":", "_load_log_config", "(", "CONF", ".", "log_config", ")", "else", ":", "_setup_logging_from_conf", "(", ")", "sys", ".", "excepthook", "=", "_create_logging_excepthook", "(", "...	30.857143	13.142857
def SystemShare(): """ Register AntShare. Returns: RegisterTransaction: """ amount = Fixed8.FromDecimal(sum(Blockchain.GENERATION_AMOUNT) * Blockchain.DECREMENT_INTERVAL) owner = ECDSA.secp256r1().Curve.Infinity admin = Crypto.ToScriptHash(PUSHT) ...	[ "def", "SystemShare", "(", ")", ":", "amount", "=", "Fixed8", ".", "FromDecimal", "(", "sum", "(", "Blockchain", ".", "GENERATION_AMOUNT", ")", "*", "Blockchain", ".", "DECREMENT_INTERVAL", ")", "owner", "=", "ECDSA", ".", "secp256r1", "(", ")", ".", "Curv...	42.307692	23.384615
def set_progress(self, progress): """Update the progress for this application. For applications processing a fixed set of work it may be useful for diagnostics to set the progress as the application processes. Progress indicates job progression, and must be a float between 0 and ...	[ "def", "set_progress", "(", "self", ",", "progress", ")", ":", "if", "not", "(", "0", "<=", "progress", "<=", "1.0", ")", ":", "raise", "ValueError", "(", "\"progress must be between 0 and 1, got %.3f\"", "%", "progress", ")", "self", ".", "_call", "(", "'Se...	43.45	23.2
def paintEvent(self, event): """ Fills the panel background. """ super(EncodingPanel, self).paintEvent(event) if self.isVisible(): # fill background painter = QtGui.QPainter(self) self._background_brush = QtGui.QBrush(self._color) painter.fillRect(...	[ "def", "paintEvent", "(", "self", ",", "event", ")", ":", "super", "(", "EncodingPanel", ",", "self", ")", ".", "paintEvent", "(", "event", ")", "if", "self", ".", "isVisible", "(", ")", ":", "# fill background", "painter", "=", "QtGui", ".", "QPainter",...	43.75	12.125
def write(self, x): """Write a string into the output stream.""" if self._new_lines: if not self._first_write: self.stream.write('\n' * self._new_lines) self.code_lineno += self._new_lines if self._write_debug_info is not None: ...	[ "def", "write", "(", "self", ",", "x", ")", ":", "if", "self", ".", "_new_lines", ":", "if", "not", "self", ".", "_first_write", ":", "self", ".", "stream", ".", "write", "(", "'\\n'", "*", "self", ".", "_new_lines", ")", "self", ".", "code_lineno", ...	44.857143	12.714286
def is_valid(cls, oid): """Checks if a `oid` string is valid or not. :Parameters: - `oid`: the object id to validate .. versionadded:: 2.3 """ if not oid: return False try: ObjectId(oid) return True except (InvalidI...	[ "def", "is_valid", "(", "cls", ",", "oid", ")", ":", "if", "not", "oid", ":", "return", "False", "try", ":", "ObjectId", "(", "oid", ")", "return", "True", "except", "(", "InvalidId", ",", "TypeError", ")", ":", "return", "False" ]	21.5	17.9375
def execute_command(args, shell=False, cwd=None, env=None, stdin=None, stdout=None, stderr=None, cmd_encoding='utf-8'): """ Execute external command :param args: command line arguments : [unicode] :param shell: True when using shell : boolean :param cwd: working directory : string :param env: en...	[ "def", "execute_command", "(", "args", ",", "shell", "=", "False", ",", "cwd", "=", "None", ",", "env", "=", "None", ",", "stdin", "=", "None", ",", "stdout", "=", "None", ",", "stderr", "=", "None", ",", "cmd_encoding", "=", "'utf-8'", ")", ":", "...	44.75	16.625
def setLegendData(self, args, kwargs): """ Set or genernate the legend data from this canteen. Uses :py:func:`.buildLegend` for genernating """ self.legendData = buildLegend(args, key=self.legendKeyFunc, **kwargs)	[ "def", "setLegendData", "(", "self", ",", "", "args", ",", "", "", "kwargs", ")", ":", "self", ".", "legendData", "=", "buildLegend", "(", "", "args", ",", "key", "=", "self", ".", "legendKeyFunc", ",", "", "", "kwargs", ")" ]	60.5	9.75
def _getSegmentActiveSynapses(self, c, i, s, activeState, newSynapses=False): """ Return a segmentUpdate data structure containing a list of proposed changes to segment s. Let activeSynapses be the list of active synapses where the originating cells have their activeState output = 1 at time step t. ...	[ "def", "_getSegmentActiveSynapses", "(", "self", ",", "c", ",", "i", ",", "s", ",", "activeState", ",", "newSynapses", "=", "False", ")", ":", "activeSynapses", "=", "[", "]", "if", "s", "is", "not", "None", ":", "# s can be None, if adding a new segment", "...	43.186047	24.767442
def chart( symbols=("AAPL", "GLD", "GOOG", "$SPX", "XOM", "msft"), start=datetime.datetime(2008, 1, 1), end=datetime.datetime(2009, 12, 31), # data stops at 2013/1/1 normalize=True, ): """Display a graph of the price history for the list of ticker symbols provided Arguments: symbols...	[ "def", "chart", "(", "symbols", "=", "(", "\"AAPL\"", ",", "\"GLD\"", ",", "\"GOOG\"", ",", "\"$SPX\"", ",", "\"XOM\"", ",", "\"msft\"", ")", ",", "start", "=", "datetime", ".", "datetime", "(", "2008", ",", "1", ",", "1", ")", ",", "end", "=", "da...	35.605263	21.026316
def initializenb(): """ Find input files and log initialization info """ logger.info('Working directory: {0}'.format(os.getcwd())) logger.info('Run on {0}'.format(asctime())) try: fileroot = os.environ['fileroot'] logger.info('Setting fileroot to {0} from environment variable.\n'.format...	[ "def", "initializenb", "(", ")", ":", "logger", ".", "info", "(", "'Working directory: {0}'", ".", "format", "(", "os", ".", "getcwd", "(", ")", ")", ")", "logger", ".", "info", "(", "'Run on {0}'", ".", "format", "(", "asctime", "(", ")", ")", ")", ...	47.28	23.12
def frame_generator(frame_duration_ms, audio, sample_rate): """Generates audio frames from PCM audio data. Takes the desired frame duration in milliseconds, the PCM data, and the sample rate. Yields Frames of the requested duration. """ n = int(sample_rate * (frame_duration_ms / 1000.0) * 2) ...	[ "def", "frame_generator", "(", "frame_duration_ms", ",", "audio", ",", "sample_rate", ")", ":", "n", "=", "int", "(", "sample_rate", "", "(", "frame_duration_ms", "/", "1000.0", ")", "", "2", ")", "offset", "=", "0", "timestamp", "=", "0.0", "duration", ...	33.5	18.0625
def create_sobol_samples(order, dim, seed=1): """ Args: order (int): Number of unique samples to generate. dim (int): Number of spacial dimensions. Must satisfy ``0 < dim < 41``. seed (int): Starting seed. Non-positive values are treated as 1. If omitt...	[ "def", "create_sobol_samples", "(", "order", ",", "dim", ",", "seed", "=", "1", ")", ":", "assert", "0", "<", "dim", "<", "DIM_MAX", ",", "\"dim in [1, 40]\"", "# global RANDOM_SEED # pylint: disable=global-statement", "# if seed is None:", "# seed = RANDOM_SEED", ...	31.424658	18.328767
def find_font(face, bold, italic): """Find font""" bold = FC_WEIGHT_BOLD if bold else FC_WEIGHT_REGULAR italic = FC_SLANT_ITALIC if italic else FC_SLANT_ROMAN face = face.encode('utf8') fontconfig.FcInit() pattern = fontconfig.FcPatternCreate() fontconfig.FcPatternAddInteger(pattern, FC_WEIG...	[ "def", "find_font", "(", "face", ",", "bold", ",", "italic", ")", ":", "bold", "=", "FC_WEIGHT_BOLD", "if", "bold", "else", "FC_WEIGHT_REGULAR", "italic", "=", "FC_SLANT_ITALIC", "if", "italic", "else", "FC_SLANT_ROMAN", "face", "=", "face", ".", "encode", "...	43.814815	16.148148
def getRecommendedRenderTargetSize(self): """Suggested size for the intermediate render target that the distortion pulls from.""" fn = self.function_table.getRecommendedRenderTargetSize pnWidth = c_uint32() pnHeight = c_uint32() fn(byref(pnWidth), byref(pnHeight)) return...	[ "def", "getRecommendedRenderTargetSize", "(", "self", ")", ":", "fn", "=", "self", ".", "function_table", ".", "getRecommendedRenderTargetSize", "pnWidth", "=", "c_uint32", "(", ")", "pnHeight", "=", "c_uint32", "(", ")", "fn", "(", "byref", "(", "pnWidth", ")...	42.875	11.75
def vsearch_chimera_filter_de_novo( fasta_filepath, working_dir, output_chimeras=True, output_nonchimeras=True, output_alns=False, output_tabular=False, log_name="vsearch_uchime_de_novo_chimera_filtering.log", HALT_EXEC=False): """ Detect chimeras present in the fasta-formatted filen...	[ "def", "vsearch_chimera_filter_de_novo", "(", "fasta_filepath", ",", "working_dir", ",", "output_chimeras", "=", "True", ",", "output_nonchimeras", "=", "True", ",", "output_alns", "=", "False", ",", "output_tabular", "=", "False", ",", "log_name", "=", "\"vsearch_u...	37.857143	18.263736
def insert(self, index, item): """Insert an item at the specified index. Args: index (int): Position to insert the item. item: Item to be inserted. It must have the type specified in the constructor. Raises: :exc:`~.exceptions.WrongListItemTy...	[ "def", "insert", "(", "self", ",", "index", ",", "item", ")", ":", "if", "issubclass", "(", "item", ".", "__class__", ",", "self", ".", "_pyof_class", ")", ":", "list", ".", "insert", "(", "self", ",", "index", ",", "item", ")", "else", ":", "raise...	37.333333	23

def on_click(self, event): """ Override this method to do more interesting things with the event. """ DesktopNotification( title=event.title, body="{} until {}!".format(event.time_remaining, event.title), icon='dialog-information', urgency=1, t...

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37.888889

14.333333

def qgis_composer_html_renderer(impact_report, component): """HTML to PDF renderer using QGIS Composer. Render using qgis composer for a given impact_report data and component context for html input. :param impact_report: ImpactReport contains data about the report that is going to be generate...

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36.986014

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def _init_weights(self, X): """Set the weights and normalize data before starting training.""" X = np.asarray(X, dtype=np.float64) if self.scaler is not None: X = self.scaler.fit_transform(X) if self.initializer is not None: self.weights = ...

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29.066667

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def unsubscribe(self, transform="", downlink=False): """Unsubscribes from a previously subscribed stream. Note that the same values of transform and downlink must be passed in order to do the correct unsubscribe:: s.subscribe(callback,transform="if last") s.unsubscribe(transform...

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40.083333

16.416667

def check_with_pyflakes(source_code, filename=None): """Check source code with pyflakes Returns an empty list if pyflakes is not installed""" try: if filename is None: filename = '<string>' try: source_code += '\n' except TypeError: # Pyth...

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42.5625

17.833333

def delete_order_by_id(cls, order_id, **kwargs): """Delete Order Delete an instance of Order by its ID. This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async=True >>> thread = api.delete_order_by_id(order_id, async=True)...

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39.809524

18.571429

def deepcopy(self): """ Create a deep copy of the PolygonsOnImage object. Returns ------- imgaug.PolygonsOnImage Deep copy. """ # Manual copy is far faster than deepcopy for PolygonsOnImage, # so use manual copy here too polys = [poly...

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28.714286

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def path(self, filename): ''' This returns the absolute path of a file uploaded to this set. It doesn't actually check whether said file exists. :param filename: The filename to return the path for. :param folder: The subfolder within the upload set previously used ...

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40.117647

22.823529

async def create_websocket_server(sock, filter=None): # pylint: disable=W0622 """ A more low-level form of open_websocket_server. You are responsible for closing this websocket. """ ws = Websocket() await ws.start_server(sock, filter=filter) return ws

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34.125

14.125

def from_hising(cls, h, J, offset=None): """Construct a binary polynomial from a higher-order Ising problem. Args: h (dict): The linear biases. J (dict): The higher-order biases. offset (optional, default=0.0): Consta...

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27.12

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def update(self, date, data=None, inow=None): """ Update strategy. Updates prices, values, weight, etc. """ # resolve stale state self.root.stale = False # update helpers on date change # also set newpt flag newpt = False if self.now == 0: ...

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34.825243

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def pageassert(func): ''' Decorator that assert page number ''' @wraps(func) def wrapper(*args, **kwargs): if args[0] < 1 or args[0] > 40: raise ValueError('Page Number not found') return func(*args, **kwargs) return wrapper

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26.7

15.9

def get_upregulated_genes_network(self) -> Graph: """Get the graph of up-regulated genes. :return Graph: Graph of up-regulated genes. """ logger.info("In get_upregulated_genes_network()") deg_graph = self.graph.copy() # deep copy graph not_diff_expr = self.graph.vs(up_...

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38.2

23.133333

def __retrieve(self, key): ''' Retrieve file location from cache DB ''' with self.get_conn() as conn: try: c = conn.cursor() if key is None: c.execute("SELECT value FROM cache_entries WHERE key IS NULL") else: ...

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39.947368

18.263158

def perform_action( self, action, machines, params, progress_title, success_title): """Perform the action on the set of machines.""" if len(machines) == 0: return 0 with utils.Spinner() as context: return self._async_perform_action( context, ac...

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43.111111

12.666667

def transform(self, X, lenscale=None): """ Apply the random basis to X. Parameters ---------- X: ndarray (N, d) array of observations where N is the number of samples, and d is the dimensionality of X. lenscale: scalar or ndarray, optional ...

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32.384615

21.230769

def imgAverage(images, copy=True): ''' returns an image average works on many, also unloaded images minimises RAM usage ''' i0 = images[0] out = imread(i0, dtype='float') if copy and id(i0) == id(out): out = out.copy() for i in images[1:]: out += imread...

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22.6875

17.3125

def get_data_by_slug_or_404(model, slug, kind='', **kwargs): """Wrap get_data_by_slug, abort 404 if missing data.""" data = get_data_by_slug(model, slug, kind, **kwargs) if not data: abort(404) return data

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28

23.375

def plot_figure(array, as_subplot, units, kpc_per_arcsec, figsize, aspect, cmap, norm, norm_min, norm_max, linthresh, linscale, xticks_manual, yticks_manual): """Open a matplotlib figure and plot the array of data on it. Parameters ----------- array : data.array.scaled_array.ScaledArray...

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55.117647

36.019608

def import_cluster_template(self, api_cluster_template, add_repositories=False): """ Create a cluster according to the provided template @param api_cluster_template: cluster template to import @param add_repositories: if true the parcels repositories in the cluster template will be added. @return: ...

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52

30.8

def _FormatDateTime(self, event): """Formats the date to a datetime object without timezone information. Note: timezone information must be removed due to lack of support by xlsxwriter and Excel. Args: event (EventObject): event. Returns: datetime.datetime|str: date and time value or ...

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35.111111

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def extract(self, name): """Get the contents of an entry. NAME is an entry name. Return the tuple (ispkg, contents). For non-Python resoures, ispkg is meaningless (and 0). Used by the import mechanism.""" if type(name) == type(''): ndx = self.toc....

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34.592593

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def list_plugins(self): """Returns a sorted list of all plugins that are available in this plugin source. This can be useful to automatically discover plugins that are available and is usually used together with :meth:`load_plugin`. """ rv = [] for _, modname, is...

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41.5

16.8

def phylotree(self): """ Get the c++ PhyloTree object corresponding to this tree. :return: PhyloTree instance """ if not self._phylotree or self._dirty: try: if ISPY3: self._phylotree = PhyloTree(self.newick.encode(), self.rooted) ...

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39.466667

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def _create_non_null_wrapper(name, t): 'creates type wrapper for non-null of given type' def __new__(cls, json_data, selection_list=None): if json_data is None: raise ValueError(name + ' received null value') return t(json_data, selection_list) def __to_graphql_input__(value, in...

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37.733333

17.866667

def add_interface(self, interface): """Manually add or overwrite an interface definition from an Interface object. :param interface: an Interface() object """ if not isinstance(interface, Interface): raise TypeError self._interfaces[interface.name] = interface

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30.6

16.5

def request_port_forward(self, address, port, handler=None): """ Ask the server to forward TCP connections from a listening port on the server, across this SSH session. If a handler is given, that handler is called from a different thread whenever a forwarded connection arrives....

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41.590909

23.5

def atlasdb_get_random_peer( con=None, path=None ): """ Select a peer from the db at random Return None if the table is empty """ ret = {} with AtlasDBOpen(con=con, path=path) as dbcon: num_peers = atlasdb_num_peers( con=con, path=path ) if num_peers is None or num_peers == 0: ...

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25.1

18.7

def get_state_paths(cls, impl, working_dir): """ Get the set of state paths that point to the current chain and state info. Returns a list of paths. """ return [config.get_db_filename(impl, working_dir), config.get_snapshots_filename(impl, working_dir)]

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48

20.333333

def remover(self, id_tipo_acesso): """Removes access type by its identifier. :param id_tipo_acesso: Access type identifier. :return: None :raise TipoAcessoError: Access type associated with equipment, cannot be removed. :raise InvalidParameterError: Protocol value is invalid o...

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38.272727

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def http_exception(channel, title): """ Creates an embed UI containing the 'too long' error message Args: channel (discord.Channel): The Discord channel to bind the embed to title (str): The title of the embed Returns: ui (ui_embed.UI): The embed UI object """ # Create...

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24.619048

22.619048

def set_key(key: str, value: str) -> dict: """Set or update a key in the conf. For now only strings are supported. We use to update the version number. """ if not _conf.path: return {} if "toml" in _conf.path: with open(_conf.path, "r") as f: parser = parse(f.read()...

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28.391304

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def long_press(self, on_element): """ Long press on an element. :Args: - on_element: The element to long press. """ self._actions.append(lambda: self._driver.execute( Command.LONG_PRESS, {'element': on_element.id})) return self

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28.8

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def _to_epoch(self, ts): """ Adds a year to the syslog timestamp because syslog doesn't use years :param ts: The timestamp to add a year to :return: Date/time string that includes a year """ year = self.year tmpts = "%s %s" % (ts, str(self.year)) new_tim...

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35.473684

22.631579

def trunc_list(s: List) -> List: """Truncate lists to maximum length.""" if len(s) > max_list_size: i = max_list_size // 2 j = i - 1 s = s[:i] + [ELLIPSIS] + s[-j:] return s

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29

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def xml_import(self, filepath="", xml_content=None, markings=None, identifier_ns_uri=None, **kwargs): """ Import a STIX or CybOX xml from file <filepath> or a string passed as ``xml_content`` You c...

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45.679487

31.470085

def _analyze_all_function_features(self, all_funcs_completed=False): """ Iteratively analyze all changed functions, update their returning attribute, until a fix-point is reached (i.e. no new returning/not-returning functions are found). :return: None """ while True: ...

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59.961538

39.307692

def decode_sequence(self, source_encoded: mx.sym.Symbol, source_encoded_lengths: mx.sym.Symbol, source_encoded_max_length: int, target_embed: mx.sym.Symbol, target_embed_lengths: mx.sym.Symbol, ...

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60.15

31.35

def parse_args(): """Parser/validator for the cmd line args.""" parser = get_parser() if len(sys.argv) < 2: parser.print_help() warnings.warn('Too few arguments!', UserWarning) parser.exit(1) # parsing try: params = parser.parse_args() except Exception as exc: ...

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33.962963

24.888889

def get_meta_content(self, metaName): """\ Extract a given meta content form document """ meta = self.parser.css_select(self.article.doc, metaName) content = None if meta is not None and len(meta) > 0: content = self.parser.getAttribute(meta[0], 'content') ...

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27.071429

18.428571

def _generate_validation_scripts(self): """ Include the scripts used by solutions. """ id_script_list_validation_fields = ( AccessibleFormImplementation.ID_SCRIPT_LIST_VALIDATION_FIELDS ) local = self.parser.find('head,body').first_result() if local i...

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39.317308

18.490385

def rescan_file(self, filename, sha256hash, apikey): """ just send the hash, check the date """ url = self.base_url + "file/rescan" params = { 'apikey': apikey, 'resource': sha256hash } rate_limit_clear = self.rate_limit() if rate_...

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40.45

19.75

def _add_converted_units(self, dataframe, parameter, key='VALUE'): """Add an additional DATA_VALUE column with converted VALUEs""" convert_unit = self.parameters.get_converter(parameter) try: log.debug("Adding unit converted DATA_VALUE to the data") dataframe[key] = dataf...

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51.3

22.4

def _ratelimited_get(self, *args, **kwargs): """Perform get request, handling rate limiting.""" with self._ratelimiter: resp = self.session.get(*args, **kwargs) # It's possible that Space-Track will return HTTP status 500 with a # query rate limit violation. This can happen ...

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43.518519

21.814815

def serializer_by_type_id(self, type_id): """ Find and return the serializer for the type-id :param type_id: type-id the serializer :return: the serializer """ if type_id <= 0: indx = index_for_default_type(type_id) serializer = self._constant_type...

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37.416667

7.916667

def crypto_sign_keypair(seed=None): """Return (verifying, secret) key from a given seed, or os.urandom(32)""" if seed is None: seed = os.urandom(PUBLICKEYBYTES) else: warnings.warn("ed25519ll should choose random seed.", RuntimeWarning) if len(seed) != 32: r...

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39

12.583333

def main(): """Ideally we shouldn't lose the first second of events""" with Input() as input_generator: def extra_bytes_callback(string): print('got extra bytes', repr(string)) print('type:', type(string)) input_generator.unget_bytes(string) time.sleep(1) ...

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41.583333

10.583333

def parameterSpace( self ): """Return the parameter space of the experiment as a list of dicts, with each dict mapping each parameter name to a value. :returns: the parameter space as a list of dicts""" ps = self.parameters() if len(ps) == 0: return [] else: ...

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35.2

14.8

def add(self, name, definition): """ Register a definition to the registry. Existing definitions are replaced silently. :param name: The name which can be used as reference in a validation schema. :type name: :class:`str` :param definition: The definition. ...

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42.5

14.5

def get_supported_metrics_topic(self, name, topic_name): ''' Retrieves the list of supported metrics for this namespace and topic name: Name of the service bus namespace. topic_name: Name of the service bus queue in this namespace. ''' response = ...

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32.65

23.55

async def restore_storage_configuration(self): """ Restore machine's storage configuration to its initial state. """ self._data = await self._handler.restore_storage_configuration( system_id=self.system_id)

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40.833333

11.5

def call_parallel(self, cdata, low): ''' Call the state defined in the given cdata in parallel ''' # There are a number of possibilities to not have the cdata # populated with what we might have expected, so just be smart # enough to not raise another KeyError as the name...

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40.565217

19.26087

def _prompt_placement(D, tt): """ Since automatic placement didn't work, find somewhere to place the model data manually with the help of the user. :param dict D: Metadata :param str tt: Table type :return str _model_name: Chosen model name for placement """ _model_name = "" # There was...

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37.142857

18.928571

def execute(helper, config, args): """ Deletes an environment """ env_config = parse_env_config(config, args.environment) environments_to_wait_for_term = [] environments = helper.get_environments() for env in environments: if env['EnvironmentName'] == args.environment: ...

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36.222222

18.592593

def get(self, model_module, model_module_version, model_name, view_module, view_module_version, view_name): """Get a value""" module_versions = self._registry[model_module] # The python semver module doesn't work well, for example, it can't do match('3', '*') # so we just take the first ...

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60.75

23.3125

def _extract_tag_from_data(self, data, tag_name=b'packet'): """Gets data containing a (part of) tshark xml. If the given tag is found in it, returns the tag data and the remaining data. Otherwise returns None and the same data. :param data: string of a partial tshark xml. :retu...

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42.176471

16.058824

def default_value(self, type_name): ''' Obtain the default value for some *type name*. ''' uname = type_name.upper() if uname == 'BOOLEAN': return False elif uname == 'INTEGER': return 0 elif uname == 'REAL': ...

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27.083333

17.916667

def dumps(data, escape=False, **kwargs): """A wrapper around `json.dumps` that can handle objects that json module is not aware. This function is aware of a list of custom serializers that can be registered by the API user, making it possible to convert any kind of object to types that the json lib...

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43.363636

22.045455

def getResults(self, parFound = None): ''' Function to obtain the Dictionarythat represents this object. :param parFound: values to return. :return: The output format will be like: [{"type" : "i3visio.email", "value": "foo@bar.com", "attri...

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46.681818

26.136364

def example_2_load_data(self): """ 加载数据 """ # 权重向量, w1代表神经网络的第一层，w2代表神经网络的第二层 self.w1 = Variable(random_normal([2, 3], stddev=1, seed=1)) self.w2 = Variable(random_normal([3, 1], stddev=1, seed=1)) # 特征向量, 区别是，这里不会在计算图中生成节点 #self.x = placeholder(float32, s...

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40.3

15.1

def list_domains(): ''' Return a list of virtual machine names on the minion CLI Example: .. code-block:: bash salt '*' virt.list_domains ''' data = __salt__['vmadm.list'](keyed=True) vms = ["UUID TYPE RAM STATE ALIAS"] for vm...

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29.380952

21.761905

def parse_input_file(text, variables=None): """ Parser for a file with syntax somewhat similar to Drake.""" text = find_includes(text) lines = text.splitlines() tasks, linenumbers = find_tasks(lines) preamble = [line for line in lines[:linenumbers[0]]] logging.debug("Preamble:\n{}".format("\n".j...

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40.4

9.65

def movingSum(requestContext, seriesList, windowSize): """ Graphs the moving sum of a metric (or metrics) over a fixed number of past points, or a time interval. Takes one metric or a wildcard seriesList followed by a number N of datapoints or a quoted string with a length of time like '1hour' or '...

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36.222222

21.68254

def get_token(self, token): ''' Request a token from the master ''' load = {} load['token'] = token load['cmd'] = 'get_token' tdata = self._send_token_request(load) return tdata

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25.888889

15.444444

def view(self, sort=None, purge=False, done=None, undone=None, **kwargs): """Handles the 'v' command. :sort: Sort pattern. :purge: Whether to purge items marked as 'done'. :done: Done pattern. :undone: Not done pattern. :kwargs: Additional arguments to pass to the View o...

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32.6

15.533333

def fit(self, X, y=None, groups=None): """Run fit with all sets of parameters. Parameters ---------- X : array-like, shape = [n_samples, n_features] Training vector, where n_samples is the number of samples and n_features is the number of feature...

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40.263158

21.105263

def commit(self, offsets=None): """Commit offsets to kafka, blocking until success or error. This commits offsets only to Kafka. The offsets committed using this API will be used on the first fetch after every rebalance and also on startup. As such, if you need to store offsets in anyth...

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52.8

29.16

def correlate(self, signal): """ Correlate records against one or many one-dimensional arrays. Parameters ---------- signal : array-like One or more signals to correlate against. """ s = asarray(signal) if s.ndim == 1: if size(s) ...

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37.222222

24.62963

def flatten(cls, stats): """Makes a flat statistics from the given statistics.""" flat_children = {} for _stats in spread_stats(stats): key = (_stats.name, _stats.filename, _stats.lineno, _stats.module) try: flat_stats = flat_children[key] exce...

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48.470588

14.823529

def query(database, query, **client_args): ''' Execute a query. database Name of the database to query on. query InfluxQL query string. ''' client = _client(**client_args) _result = client.query(query, database=database) if isinstance(_result, collections.Sequence): ...

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28.8125

23.8125

def _assemble_translocation(stmt): """Assemble Translocation statements into text.""" agent_str = _assemble_agent_str(stmt.agent) stmt_str = agent_str + ' translocates' if stmt.from_location is not None: stmt_str += ' from the ' + stmt.from_location if stmt.to_location is not None: s...

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43.111111

5.333333

def transitively_reduce(self): """ Performs a transitive reduction on the graph. """ removals = set() for from_node, neighbors in self._edges.items(): childpairs = \ [(c1, c2) for c1 in neighbors for c2 in neighbors if c1 != c2] for child...

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33.647059

17.176471

def ppdict(dict_to_print, br='\n', html=False, key_align='l', sort_keys=True, key_preffix='', key_suffix='', value_prefix='', value_suffix='', left_margin=3, indent=2): """Indent representation of a dict""" if dict_to_print: if sort_keys: dic = dict_to_print.copy() key...

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37.351351

24.891892

def deletesystemhook(self, hook_id): """ Delete a project hook :param hook_id: hook id :return: True if success """ data = {"id": hook_id} request = requests.delete( '{0}/{1}'.format(self.hook_url, hook_id), data=data, headers=self.header...

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def _remove_processed_data( self): """*remove processed data* """ self.log.info('starting the ``_remove_processed_data`` method') archivePath = self.settings["atlas archive path"] from fundamentals.mysql import readquery sqlQuery = u""" select mj...

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def get_allowed(allow, disallow): """ Normalize the given string attributes as a list of all allowed vClasses.""" if allow is None and disallow is None: return SUMO_VEHICLE_CLASSES elif disallow is None: return allow.split() else: disallow = disallow.split() return tuple(...

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def dictionize(fields: Sequence, records: Sequence) -> Generator: """Create dictionaries mapping fields to record data.""" return (dict(zip(fields, rec)) for rec in records)

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async def from_href(self): """Get the full object from spotify with a `href` attribute.""" if not hasattr(self, 'href'): raise TypeError('Spotify object has no `href` attribute, therefore cannot be retrived') elif hasattr(self, 'http'): return await self.http.request(('G...

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def nalu(x, depth, epsilon=1e-30, name=None, reuse=None): """NALU as in https://arxiv.org/abs/1808.00508.""" with tf.variable_scope(name, default_name="nalu", values=[x], reuse=reuse): x_shape = shape_list(x) x_flat = tf.reshape(x, [-1, x_shape[-1]]) gw = tf.get_variable("w", [x_shape[-1], depth]) g...

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def set_address(self, address): """ Set the address of the remote host the is contacted, without changing hostname, username, password, protocol, and TCP port number. This is the actual address that is used to open the connection. :type address: string :param ad...

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def frequency2fractional(frequency, mean_frequency=-1): """ Convert frequency in Hz to fractional frequency Parameters ---------- frequency: np.array Data array of frequency in Hz mean_frequency: float (optional) The nominal mean frequency, in Hz if omitted, defaults to mean...

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def get_monomers(self, ligands=True, pseudo_group=False): """Retrieves all the `Monomers` from the `Assembly` object. Parameters ---------- ligands : bool, optional If `true`, will include ligand `Monomers`. pseudo_group : bool, optional If `True`, will i...

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def valid_body_waiting(self): """ Check if a valid body is waiting in buffer """ # 0f f8 be 04 00 08 00 00 2f 04 packet_size = velbus.MINIMUM_MESSAGE_SIZE + \ (self.buffer[3] & 0x0F) if len(self.buffer) < packet_size: self.logger.debug("Buffer does...

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def setup(product_name): """Setup logging.""" if CONF.log_config: _load_log_config(CONF.log_config) else: _setup_logging_from_conf() sys.excepthook = _create_logging_excepthook(product_name)

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def SystemShare(): """ Register AntShare. Returns: RegisterTransaction: """ amount = Fixed8.FromDecimal(sum(Blockchain.GENERATION_AMOUNT) * Blockchain.DECREMENT_INTERVAL) owner = ECDSA.secp256r1().Curve.Infinity admin = Crypto.ToScriptHash(PUSHT) ...

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def set_progress(self, progress): """Update the progress for this application. For applications processing a fixed set of work it may be useful for diagnostics to set the progress as the application processes. Progress indicates job progression, and must be a float between 0 and ...

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43.45

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def paintEvent(self, event): """ Fills the panel background. """ super(EncodingPanel, self).paintEvent(event) if self.isVisible(): # fill background painter = QtGui.QPainter(self) self._background_brush = QtGui.QBrush(self._color) painter.fillRect(...

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def write(self, x): """Write a string into the output stream.""" if self._new_lines: if not self._first_write: self.stream.write('\n' * self._new_lines) self.code_lineno += self._new_lines if self._write_debug_info is not None: ...

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def is_valid(cls, oid): """Checks if a `oid` string is valid or not. :Parameters: - `oid`: the object id to validate .. versionadded:: 2.3 """ if not oid: return False try: ObjectId(oid) return True except (InvalidI...

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def execute_command(args, shell=False, cwd=None, env=None, stdin=None, stdout=None, stderr=None, cmd_encoding='utf-8'): """ Execute external command :param args: command line arguments : [unicode] :param shell: True when using shell : boolean :param cwd: working directory : string :param env: en...

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def setLegendData(self, *args, **kwargs): """ Set or genernate the legend data from this canteen. Uses :py:func:`.buildLegend` for genernating """ self.legendData = buildLegend(*args, key=self.legendKeyFunc, **kwargs)

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def _getSegmentActiveSynapses(self, c, i, s, activeState, newSynapses=False): """ Return a segmentUpdate data structure containing a list of proposed changes to segment s. Let activeSynapses be the list of active synapses where the originating cells have their activeState output = 1 at time step t. ...

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def chart( symbols=("AAPL", "GLD", "GOOG", "$SPX", "XOM", "msft"), start=datetime.datetime(2008, 1, 1), end=datetime.datetime(2009, 12, 31), # data stops at 2013/1/1 normalize=True, ): """Display a graph of the price history for the list of ticker symbols provided Arguments: symbols...

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def initializenb(): """ Find input files and log initialization info """ logger.info('Working directory: {0}'.format(os.getcwd())) logger.info('Run on {0}'.format(asctime())) try: fileroot = os.environ['fileroot'] logger.info('Setting fileroot to {0} from environment variable.\n'.format...

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def frame_generator(frame_duration_ms, audio, sample_rate): """Generates audio frames from PCM audio data. Takes the desired frame duration in milliseconds, the PCM data, and the sample rate. Yields Frames of the requested duration. """ n = int(sample_rate * (frame_duration_ms / 1000.0) * 2) ...

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def create_sobol_samples(order, dim, seed=1): """ Args: order (int): Number of unique samples to generate. dim (int): Number of spacial dimensions. Must satisfy ``0 < dim < 41``. seed (int): Starting seed. Non-positive values are treated as 1. If omitt...

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def find_font(face, bold, italic): """Find font""" bold = FC_WEIGHT_BOLD if bold else FC_WEIGHT_REGULAR italic = FC_SLANT_ITALIC if italic else FC_SLANT_ROMAN face = face.encode('utf8') fontconfig.FcInit() pattern = fontconfig.FcPatternCreate() fontconfig.FcPatternAddInteger(pattern, FC_WEIG...

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def getRecommendedRenderTargetSize(self): """Suggested size for the intermediate render target that the distortion pulls from.""" fn = self.function_table.getRecommendedRenderTargetSize pnWidth = c_uint32() pnHeight = c_uint32() fn(byref(pnWidth), byref(pnHeight)) return...

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def vsearch_chimera_filter_de_novo( fasta_filepath, working_dir, output_chimeras=True, output_nonchimeras=True, output_alns=False, output_tabular=False, log_name="vsearch_uchime_de_novo_chimera_filtering.log", HALT_EXEC=False): """ Detect chimeras present in the fasta-formatted filen...

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def insert(self, index, item): """Insert an item at the specified index. Args: index (int): Position to insert the item. item: Item to be inserted. It must have the type specified in the constructor. Raises: :exc:`~.exceptions.WrongListItemTy...

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