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def count(self, sub, start=0, end=-1): """Return the number of non-overlapping occurrences of substring sub in string[start:end]. Optional arguments start and end are interpreted as in slice notation. :param str sub: Substring to search. :param int start: Beginning position. :p...
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def wait_until_element_present(self, element, timeout=None): """Search element and wait until it is found :param element: PageElement or element locator as a tuple (locator_type, locator_value) to be found :param timeout: max time to wait :returns: the web element if it is present ...
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def group_survival_table_from_events( groups, durations, event_observed, birth_times=None, limit=-1 ): # pylint: disable=too-many-locals """ Joins multiple event series together into DataFrames. A generalization of `survival_table_from_events` to data with groups. Previously called `group_event_series`...
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def get_instance(self, payload): """ Build an instance of CredentialListInstance :param dict payload: Payload response from the API :returns: twilio.rest.trunking.v1.trunk.credential_list.CredentialListInstance :rtype: twilio.rest.trunking.v1.trunk.credential_list.CredentialLis...
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def create(cls, config_file=None): """ Return the default configuration. """ if cls.instance is None: cls.instance = cls(config_file) # Load config file, possibly overwriting the defaults cls.instance.load_ini() if config_file and config_file != cls....
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def updateAllKeys(self): """Update times for all keys in the layout.""" for kf, key in zip(self.kf_list, self.sorted_key_list()): kf.update(key, self.dct[key])
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def convert_outlook_msg(msg_bytes): """ Uses the ``msgconvert`` Perl utility to convert an Outlook MS file to standard RFC 822 format Args: msg_bytes (bytes): the content of the .msg file Returns: A RFC 822 string """ if not is_outlook_msg(msg_bytes): raise ValueErr...
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def readdir(self, req, ino, size, off, fi): """Read directory Valid replies: reply_readdir reply_err """ if ino == 1: attr = {'st_ino': 1, 'st_mode': S_IFDIR} entries = [('.', attr), ('..', attr)] self.reply_readdir(req, size, ...
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def bound_perturbed_gmres(pseudo, p, epsilon, deltas): '''Compute GMRES perturbation bound based on pseudospectrum Computes the GMRES bound from [SifEM13]_. ''' if not numpy.all(numpy.array(deltas) > epsilon): raise ArgumentError('all deltas have to be greater than epsilon') bound = [] ...
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def semantic_alert(visitor, block): """ Format: {% alert class=error %} message {% endalert %} """ txt = [] cls = block['kwargs'].get('class', '') txt.append('<div class="ui %s message">' % cls) text = visitor.parse_text(block['body'], 'article') txt.appe...
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def set(self, section, option, value=''): ''' This is overridden from the RawConfigParser merely to change the default value for the 'value' argument. ''' self._string_check(value) super(GitConfigParser, self).set(section, option, value)
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def step(self, closure=None): """Performs a single optimization step. Arguments: closure (callable, optional): A closure that reevaluates the model and returns the loss. """ loss = None if closure is not None: loss = closure() for...
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def projection(self, axis): """Sums all data along all other axes, then return Hist1D""" axis = self.get_axis_number(axis) projected_hist = np.sum(self.histogram, axis=self.other_axes(axis)) return Hist1d.from_histogram(projected_hist, bin_edges=self.bin_edges[axis])
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def match_color_index(self, color): """Takes an "R,G,B" string or wx.Color and returns a matching xlwt color. """ from jcvi.utils.webcolors import color_diff if isinstance(color, int): return color if color: if isinstance(color, six.string_types): ...
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def LoadGDAL(filename, no_data=None): """Read a GDAL file. Opens any file GDAL can read, selects the first raster band, and loads it and its metadata into a RichDEM array of the appropriate data type. If you need to do something more complicated, look at the source of this function. Args: ...
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def create_virtual_aggregation(geometry, crs): """Function to create aggregation layer based on extent. :param geometry: The geometry to use as an extent. :type geometry: QgsGeometry :param crs: The Coordinate Reference System to use for the layer. :type crs: QgsCoordinateReferenceSystem :ret...
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def supprime(cls,table, **kwargs): """ Remove entries matchin given condition kwargs is a dict of column name : value , with length ONE. """ assert len(kwargs) == 1 field, value = kwargs.popitem() req = f"""DELETE FROM {table} WHERE {field} = """ + cls.mark_style ...
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def backing_type_for(value): """Returns the DynamoDB backing type for a given python value's type :: 4 -> 'N' ['x', 3] -> 'L' {2, 4} -> 'SS' """ if isinstance(value, str): vtype = "S" elif isinstance(value, bytes): vty...
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def Hf_g(CASRN, AvailableMethods=False, Method=None): r'''This function handles the retrieval of a chemical's gas heat of formation. Lookup is based on CASRNs. Will automatically select a data source to use if no Method is provided; returns None if the data is not available. Prefered sources are 'A...
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def GetNextWrittenEventSource(self): """Retrieves the next event source that was written after open. Returns: EventSource: event source or None if there are no newly written ones. Raises: IOError: when the storage writer is closed. OSError: when the storage writer is closed. """ ...
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def api_request(self, url, data=None, method='GET', raw=False, file=None): """ Perform an API request to the given URL, optionally including the specified data :type url: String :param url: the URL to which to make the request :type data: String :param data: the data to ...
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def directory_generator(dirname, trim=0): """ yields a tuple of (relative filename, chunking function). The chunking function can be called to open and iterate over the contents of the filename. """ def gather(collect, dirname, fnames): for fname in fnames: df = join(dirname...
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def reference_cluster(envs, name): """ Return set of all env names referencing or referenced by given name. >>> cluster = sorted(reference_cluster([ ... {'name': 'base', 'refs': []}, ... {'name': 'test', 'refs': ['base']}, ... {'name': 'local', 'refs': ['test']}, ... ], 'tes...
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def parse_json(pairs): """ modified from: https://stackoverflow.com/questions/956867/how-to-get-string-objects-instead-of-unicode-from-json#34796078 pass this to the object_pairs_hook kwarg of json.load/loads """ new_pairs = [] for key, value in pairs: if isinstance(value, unicode):...
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def wrap(self, row: Union[Mapping[str, Any], Sequence[Any]]): """Return row tuple for row.""" return ( self.dataclass( **{ ident: row[column_name] for ident, column_name in self.ids_and_column_names.items() } ...
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def en_passant_moves(self, position): """ Finds possible en passant moves. :rtype: list """ # if pawn is not on a valid en passant get_location then return None if self.on_en_passant_valid_location(): for move in itertools.chain(self.add_one_en_passant_move(...
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def _determine_monetary_account_id(cls, monetary_account_id=None): """ :type monetary_account_id: int :rtype: int """ if monetary_account_id is None: return context.BunqContext.user_context().primary_monetary_account.id_ return monetary_account_id
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def run(self, dag): """ Pick a convenient layout depending on the best matching qubit connectivity, and set the property `layout`. Args: dag (DAGCircuit): DAG to find layout for. Raises: TranspilerError: if dag wider than self.coupling_map """ ...
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def create_df_file_with_query(self, query, output): """ Dumps in df in chunks to avoid crashes. """ chunk_size = 100000 offset = 0 data = defaultdict(lambda : defaultdict(list)) with open(output, 'wb') as outfile: query = query.replace(';', '') qu...
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def create_dataset(self, group, chunk_size): """Initializes sparse specific datasets""" group.attrs['format'] = self.dformat group.attrs['dim'] = self.dim if chunk_size == 'auto': group.create_dataset( 'coordinates', (0, 2), dtype=np.float64, ...
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def assert_datasource_protocol(event): """Assert that an event meets the protocol for datasource outputs.""" assert event.type in DATASOURCE_TYPE # Done packets have no dt. if not event.type == DATASOURCE_TYPE.DONE: assert isinstance(event.dt, datetime) assert event.dt.tzinfo == pytz.u...
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def drop(self, table): """ Drop a table from a database. Accepts either a string representing a table name or a list of strings representing a table names. """ existing_tables = self.tables if isinstance(table, (list, set, tuple)): for t in table: ...
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def parseMemory(memAttribute): """ Returns EC2 'memory' string as a float. Format should always be '#' GiB (example: '244 GiB' or '1,952 GiB'). Amazon loves to put commas in their numbers, so we have to accommodate that. If the syntax ever changes, this will raise. :param memAttribute: EC2 JSO...
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def _logout_url(request, next_page=None): """ Generates CAS logout URL :param: request RequestObj :param: next_page Page to redirect after logout. """ url = urlparse.urljoin(settings.CAS_SERVER_URL, 'logout') if next_page and getattr(settings, 'CAS_PROVIDE_URL_TO_LOGOUT', True): ...
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def drop_all(self, check_first: bool = True): """Drop all tables from the database. :param bool check_first: Defaults to True, only issue DROPs for tables confirmed to be present in the target database. Defers to :meth:`sqlalchemy.sql.schema.MetaData.drop_all` """ self._metada...
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def get_predicates(self, class_, controller=None): """Get full predicate information for given request class, and cache for subsequent calls. """ if class_ not in self._predicates: if controller is None: controller = self._find_controller(class_) e...
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def statements(self): '''Return a list of statements This is done by joining together any rows that have continuations ''' # FIXME: no need to do this every time; we should cache the # result if len(self.rows) == 0: return [] current_statemen...
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def execute_notebook(self, name): """Loads and then runs a notebook file.""" warnings.filterwarnings("ignore", category=DeprecationWarning) nb,f = self.load_notebook(name) self.run_notebook(nb,f) self.assertTrue(True)
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def parse_parameter_reference(self, tup_tree): """ :: <!ELEMENT PARAMETER.REFERENCE (QUALIFIER*)> <!ATTLIST PARAMETER.REFERENCE %CIMName; %ReferenceClass;> """ self.check_node(tup_tree, 'PARAMETER.REFERENCE', ('NAME',), ...
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def make_field_objects(field_data, names): # type: (List[Dict[Text, Text]], Names) -> List[Field] """We're going to need to make message parameters too.""" field_objects = [] field_names = [] # type: List[Text] for field in field_data: if hasattr(field, 'get') and ca...
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def sr1flood(x, promisc=None, filter=None, iface=None, nofilter=0, *args, **kargs): # noqa: E501 """Flood and receive packets at layer 3 and return only the first answer prn: function applied to packets received verbose: set verbosity level nofilter: put 1 to avoid use of BPF filters filter: provide a BPF ...
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def all_terms(self): """Iterate over all of the terms. The self.terms property has only root level terms. This iterator iterates over all terms""" for s_name, s in self.sections.items(): # Yield the section header if s.name != 'Root': yield s ...
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def to_ip(self, values, from_unit): """Return values in IP and the units to which the values have been converted.""" if from_unit in self._ip_units: return values, from_unit elif from_unit == 'degC-hours': return self.to_unit(values, 'degF-hours', from_unit), 'degF-hours'...
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def set_dataframe_format(self, new_format): """ Set format to use in DataframeEditor. Args: new_format (string): e.g. "%.3f" """ self.sig_option_changed.emit('dataframe_format', new_format) self.model.dataframe_format = new_format
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def _wrapusage(self, usage=None, width=0): """Textwrap usage instructions. ARGS: width = 0 <int>: Maximum allowed page width. 0 means use default from self.iMaxHelpWidth. """ if not width: width = self.width return textwrap.fill('USAGE...
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def locked(dev, target): """ Gets or sets the lock. """ click.echo("Locked: %s" % dev.locked) if target is not None: click.echo("Setting lock: %s" % target) dev.locked = target
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def makeEquilibriumTable(out_filename, four_in_files, CRRA): ''' Make the equilibrium statistics table for the paper, saving it as a tex file in the tables folder. Also makes a version for the slides that doesn't use the table environment, nor include the note at bottom. Parameters ---------- ...
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def deliver_hook(target, payload, instance_id=None, hook_id=None, **kwargs): """ target: the url to receive the payload. payload: a python primitive data structure instance_id: a possibly None "trigger" instance ID hook_id: the ID of defining Hook object """ ...
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def print(self, *args, end='\n', file=None): """Convenience function so you don't need to remember to put the \n at the end of the line. """ if file is None: file = self.stdout s = ' '.join(str(arg) for arg in args) + end file.write(s)
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def get_arp_table(self): """ Get arp table information. Return a list of dictionaries having the following set of keys: * interface (string) * mac (string) * ip (string) * age (float) For example:: [ { ...
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def _validate_entities(self, stages): """ Purpose: Validate whether the argument 'stages' is of list of Stage objects :argument: list of Stage objects """ if not stages: raise TypeError(expected_type=Stage, actual_type=type(stages)) if not isinstance(stages,...
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def send(self, message, socket_): """ Sends a message (dict) to the socket. Message consists of a 8-byte len header followed by a msgpack-numpy encoded dict. Args: message: The message dict (e.g. {"cmd": "reset"}) socket_: The python socket object to use. ...
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def _field_value_text(self, field): """Return the html representation of the value of the given field""" if field in self.fields: return unicode(self.get(field)) else: return self.get_timemachine_instance(field)._object_name_text()
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def _onCompletionListItemSelected(self, index): """Item selected. Insert completion to editor """ model = self._widget.model() selectedWord = model.words[index] textToInsert = selectedWord[len(model.typedText()):] self._qpart.textCursor().insertText(textToInsert) ...
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def _cleanup(self): """Cleanup the stored sessions""" current_time = time.time() timeout = self._config.timeout if current_time - self._last_cleanup_time > timeout: self.store.cleanup(timeout) self._last_cleanup_time = current_time
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def _read_linguas_from_files(env, linguas_files=None): """ Parse `LINGUAS` file and return list of extracted languages """ import SCons.Util import SCons.Environment global _re_comment global _re_lang if not SCons.Util.is_List(linguas_files) \ and not SCons.Util.is_String(linguas_fil...
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def random_word(self, length, prefix=0, start=False, end=False, flatten=False): """ Generate a random word of length from this table. :param length: the length of the generated word; >= 1; :param prefix: if greater than 0, the maximum length of the prefix to ...
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def build(self): """Builds the index, creating an instance of `lunr.Index`. This completes the indexing process and should only be called once all documents have been added to the index. """ self._calculate_average_field_lengths() self._create_field_vectors() sel...
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def predict_epitopes_from_args(args): """ Returns an epitope collection from the given commandline arguments. Parameters ---------- args : argparse.Namespace Parsed commandline arguments for Topiary """ mhc_model = mhc_binding_predictor_from_args(args) variants = variant_collect...
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def best_identities(self): """Returns identities of the best HSP in alignment. """ if len(self.hsp_list) > 0: return round(float(self.hsp_list[0].identities) / float(self.hsp_list[0].align_length) * 100, 1)
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def get_gallery_favorites(self): """Get a list of the images in the gallery this user has favorited.""" url = (self._imgur._base_url + "/3/account/{0}/gallery_favorites".format( self.name)) resp = self._imgur._send_request(url) return [Image(img, self._imgur) for img in re...
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def compose_info(root_dir, files, hash_fn, aleph_record, urn_nbn=None): """ Compose `info` XML file. Info example:: <?xml version="1.0" encoding="UTF-8" standalone="yes" ?> <info> <created>2014-07-31T10:58:53</created> <metadataversion>1.0</metadataversion> ...
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def tb2radiance(self, tb_, **kwargs): """Get the radiance from the brightness temperature (Tb) given the band name. Input: tb_: Brightness temperature of the band (self.band) Optional arguments: lut: If not none, this is a Look Up Table with tb and radiance values ...
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def translate_gene(self, gene): """ Translate a gene with binary DNA into a base-10 floating point real number. Parses the DNA in this manner: 1. The first bit determines the sign of the integer portion of the result (0=positive, 1=negative) 2. The next ``significand...
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def add_arguments(self, parser): """ Add arguments to the command parser. Uses argparse syntax. See documentation at https://docs.python.org/3/library/argparse.html. """ parser.add_argument( '--start', '-s', default=0, type=int, ...
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def write(self, ostream, kmip_version=enums.KMIPVersion.KMIP_1_0): """ Write the data encoding the ExtensionInformation object to a stream. Args: ostream (Stream): A data stream in which to encode object data, supporting a write method; usually a BytearrayStream obje...
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def get_archives(self, offset=None, count=None, session_id=None): """Returns an ArchiveList, which is an array of archives that are completed and in-progress, for your API key. :param int: offset Optional. The index offset of the first archive. 0 is offset of the most recently started...
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def parse_line(self, line): """ For each line we are passed, call the XML parser. Returns the line if we are outside one of the ignored tables, otherwise returns the empty string. @param line: the line of the LIGO_LW XML file to be parsed @type line: string @return: the line of XML passed ...
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def filterAcceptsRow(self, source_row, source_parent): """Exclude items in `self.excludes`""" model = self.sourceModel() item = model.items[source_row] key = getattr(item, "filter", None) if key is not None: regex = self.filterRegExp() if regex.pattern(): ...
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def add_checker(self, checker): """walk to the checker's dir and collect visit and leave methods""" # XXX : should be possible to merge needed_checkers and add_checker vcids = set() lcids = set() visits = self.visit_events leaves = self.leave_events for member in ...
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def statistics(self): """ Get the dictionary with the count of the check-statuses :return: dict(str -> int) """ result = {} for r in self.results: result.setdefault(r.status, 0) result[r.status] += 1 return result
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def get_info(handle): """Get information about this current console window (for Microsoft Windows only). Raises IOError if attempt to get information fails (if there is no console window). Don't forget to call _WindowsCSBI.initialize() once in your application before calling this method. ...
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def parse(readDataInstance, numberOfEntries): """ Returns a L{ImageBoundForwarderRef} array where every element is a L{ImageBoundForwarderRefEntry} object. @type readDataInstance: L{ReadData} @param readDataInstance: A L{ReadData} object with the corresponding data to generate ...
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def _get_events(self, result): """"Internal method for being able to run unit tests.""" events = [] for event_data in result: event = Event.factory(event_data) if event is not None: events.append(event) if isinstance(event, DeviceStateCh...
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def get_ptn(unit): """获取文本行的中文字符的个数 Keyword arguments: unit -- 文本行 Return: ptn -- 纯文本数 """ ptn = 0 match_re = re.findall(chinese, unit) if match_re: string = ''.join(match_re) ptn = len(string) return int(ptn)
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def add_topic(self, topic): """Add a topic to the list of topics tracked via metadata. Arguments: topic (str): topic to track Returns: Future: resolves after metadata request/response """ if topic in self._topics: return Future().success(set(...
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def _connected(cm, nodes, connection): """Test connectivity for the connectivity matrix.""" if nodes is not None: cm = cm[np.ix_(nodes, nodes)] num_components, _ = connected_components(cm, connection=connection) return num_components < 2
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def adjustChildren(self, delta, secs=False): """ Shifts the children for this item by the inputed number of days. :param delta | <int> """ if self.adjustmentsBlocked('children'): return if self.itemStyle() != self.ItemStyle....
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def project_path(cls, user, project): """Return a fully-qualified project string.""" return google.api_core.path_template.expand( "users/{user}/projects/{project}", user=user, project=project )
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def remove_api_key_from_groups(self, api_key, body, **kwargs): # noqa: E501 """Remove API key from groups. # noqa: E501 An endpoint for removing API key from groups. **Example usage:** `curl -X DELETE https://api.us-east-1.mbedcloud.com/v3/api-keys/{apikey-id}/groups -d '[0162056a9a1586f30242590700...
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def _slr_build_parser_table(productionset): """SLR method to build parser table""" result = ParserTable() statesset = build_states_sets(productionset) for itemindex, itemset in enumerate(statesset): LOG.debug("_slr_build_parser_table: Evaluating itemset:" + str(itemset)) for symbol in pr...
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def read_env(path=None, recurse=True, stream=None, verbose=False, override=False): """Read a .env file into os.environ. If .env is not found in the directory from which this method is called, the default behavior is to recurse up the directory tree until a .env file is found. If you do ...
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def start(cls, settings=None): """ RUN ME FIRST TO SETUP THE THREADED LOGGING http://victorlin.me/2012/08/good-logging-practice-in-python/ log - LIST OF PARAMETERS FOR LOGGER(S) trace - SHOW MORE DETAILS IN EVERY LOG LINE (default False) cprofile - True==ENABL...
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def csch(x, context=None): """ Return the hyperbolic cosecant of x. """ return _apply_function_in_current_context( BigFloat, mpfr.mpfr_csch, (BigFloat._implicit_convert(x),), context, )
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def get_agents(self, addr=True, agent_cls=None, as_coro=False): """Get agents from the slave environments. :param bool addr: If ``True``, returns only addresses of the agents, otherwise returns a :class:`Proxy` object for each agent. :param agent_cls: If spe...
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def file_matches(filename, patterns): """Does this filename match any of the patterns?""" return any(fnmatch.fnmatch(filename, pat) or fnmatch.fnmatch(os.path.basename(filename), pat) for pat in patterns)
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def confirm_deliveries(self): """Set the channel to confirm that each message has been successfully delivered. :raises AMQPChannelError: Raises if the channel encountered an error. :raises AMQPConnectionError: Raises if the connection encountered an ...
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def delete_os_dummy_rtr(self, tenant_id, fw_dict, is_fw_virt=False): """Delete the Openstack Dummy router and store the info in DB. """ ret = True tenant_name = fw_dict.get('tenant_name') try: rtr_id = fw_dict.get('router_id') if not rtr_id: LOG.er...
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def parse_trips(self, xml, requested_time): """ Parse the NS API xml result into Trip objects """ obj = xmltodict.parse(xml) trips = [] if 'error' in obj: print('Error in trips: ' + obj['error']['message']) return None try: fo...
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def contains_empty(features): """Check features data are not empty :param features: The features data to check. :type features: list of numpy arrays. :return: True if one of the array is empty, False else. """ if not features: return True for feature in features: if featur...
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def max_runs_reached(self): """ :return: whether all file paths have been processed max_runs times """ if self._max_runs == -1: # Unlimited runs. return False for file_path in self._file_paths: if self._run_count[file_path] < self._max_runs: ...
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def main(args=None): """Main""" vs = [(v-100)*0.001 for v in range(200)] for f in ['IM.channel.nml','Kd.channel.nml']: nml_doc = pynml.read_neuroml2_file(f) for ct in nml_doc.ComponentType: ys = [] for v in vs: req_variables = {'v':'%sV'%v,...
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def ivorn_prefix_present(session, ivorn_prefix): """ Predicate, returns whether there is an entry in the database with matching IVORN prefix. """ n_matches = session.query(Voevent.ivorn).filter( Voevent.ivorn.like('{}%'.format(ivorn_prefix))).count() return bool(n_matches)
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def push_concurrency_history_item(self, state, number_concurrent_threads): """Adds a new concurrency-history-item to the history item list A concurrent history item stores information about the point in time where a certain number of states is launched concurrently (e.g. in a barrier co...
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def _add_process_guards(self, engine): """Add multiprocessing guards. Forces a connection to be reconnected if it is detected as having been shared to a sub-process. """ @sqlalchemy.event.listens_for(engine, "connect") def connect(dbapi_connection, connection_record): ...
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def is_resource_protected(self, request, **kwargs): """ Returns true if and only if the resource's URL is *not* exempt and *is* protected. """ exempt_urls = self.get_exempt_url_patterns() protected_urls = self.get_protected_url_patterns() path = request.path_info.lstrip('...
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def move(self, entries, directory): """ Move one or more entries (file or directory) to the destination directory :param list entries: a list of source entries (:class:`.BaseFile` object) :param directory: destination directory :return: whether the action is ...
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def value( self, node, parent=None ): """Return value used to compare size of this node""" # this is the *weighted* size/contribution of the node try: return node['contribution'] except KeyError, err: contribution = int(node.get('totsize',0)/float( len(node.get('...
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def schedule_hostgroup_host_downtime(self, hostgroup, start_time, end_time, fixed, trigger_id, duration, author, comment): """Schedule a downtime for each host of a hostgroup Format of the line that triggers function call:: SCHEDULE_HOSTGROUP_HOST_DOWNTI...
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def requires_authentication(fn): """ Requires that the calling Subject be authenticated before allowing access. """ @functools.wraps(fn) def wrap(*args, **kwargs): subject = WebYosai.get_current_subject() if not subject.authenticated: msg...
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