kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def _agate_to_schema(self, agate_table, column_override): """Convert agate.Table with column names to a list of bigquery schemas. """ bq_schema = [] for idx, col_name in enumerate(agate_table.column_names): inferred_type = self.convert_agate_type(agate_table, idx) ...	[ "def", "_agate_to_schema", "(", "self", ",", "agate_table", ",", "column_override", ")", ":", "bq_schema", "=", "[", "]", "for", "idx", ",", "col_name", "in", "enumerate", "(", "agate_table", ".", "column_names", ")", ":", "inferred_type", "=", "self", ".", ...	45.363636	17.545455
def _find_model(self, constructor, table_name, constraints=None, *, columns=None, order_by=None): """Calls DataAccess.find and passes the results to the given constructor.""" data = self.find(table_name, constraints, columns=columns, order_by=order_by) return constructor(data) if data else None	[ "def", "_find_model", "(", "self", ",", "constructor", ",", "table_name", ",", "constraints", "=", "None", ",", "*", ",", "columns", "=", "None", ",", "order_by", "=", "None", ")", ":", "data", "=", "self", ".", "find", "(", "table_name", ",", "constra...	76	26
def listDF(option='mostactive', token='', version=''): '''Returns an array of quotes for the top 10 symbols in a specified list. https://iexcloud.io/docs/api/#list Updated intraday Args: option (string); Option to query token (string); Access token version (string); API versio...	[ "def", "listDF", "(", "option", "=", "'mostactive'", ",", "token", "=", "''", ",", "version", "=", "''", ")", ":", "df", "=", "pd", ".", "DataFrame", "(", "list", "(", "option", ",", "token", ",", "version", ")", ")", "_toDatetime", "(", "df", ")",...	24.421053	22.105263
def get_weighted_random_index(self,weights): """Return an index of an array based on the weights if a random number between 0 and 1 is less than an index return the lowest index :param weights: a list of floats for how to weight each index [w1, w2, ... wN] :type weights: list :return: index ...	[ "def", "get_weighted_random_index", "(", "self", ",", "weights", ")", ":", "tot", "=", "float", "(", "sum", "(", "[", "float", "(", "x", ")", "for", "x", "in", "weights", "]", ")", ")", "fracarray", "=", "[", "weights", "[", "0", "]", "]", "for", ...	33.333333	16.857143
def _set_compact_flash(self, v, load=False): """ Setter method for compact_flash, mapped from YANG variable /system_monitor/compact_flash (container) If this variable is read-only (config: false) in the source YANG file, then _set_compact_flash is considered as a private method. Backends looking to ...	[ "def", "_set_compact_flash", "(", "self", ",", "v", ",", "load", "=", "False", ")", ":", "if", "hasattr", "(", "v", ",", "\"_utype\"", ")", ":", "v", "=", "v", ".", "_utype", "(", "v", ")", "try", ":", "t", "=", "YANGDynClass", "(", "v", ",", "...	80.727273	37.545455
def __ensure_provisioning_alarm(table_name, key_name): """ Ensure that provisioning alarm threshold is not exceeded :type table_name: str :param table_name: Name of the DynamoDB table :type key_name: str :param key_name: Configuration option key name """ lookback_window_start = get_table_op...	[ "def", "__ensure_provisioning_alarm", "(", "table_name", ",", "key_name", ")", ":", "lookback_window_start", "=", "get_table_option", "(", "key_name", ",", "'lookback_window_start'", ")", "lookback_period", "=", "get_table_option", "(", "key_name", ",", "'lookback_period'...	40.923913	15.673913
def redo(self): """ Redo the latest undone command. """ self.undo_manager.redo() self.notify_observers() logging.debug('undo_manager redo stack={}'.format(self.undo_manager._redo_stack))	[ "def", "redo", "(", "self", ")", ":", "self", ".", "undo_manager", ".", "redo", "(", ")", "self", ".", "notify_observers", "(", ")", "logging", ".", "debug", "(", "'undo_manager redo stack={}'", ".", "format", "(", "self", ".", "undo_manager", ".", "_redo_...	32.571429	13.142857
def result(retn): ''' Return a value or raise an exception from a retn tuple. ''' ok, valu = retn if ok: return valu name, info = valu ctor = getattr(s_exc, name, None) if ctor is not None: raise ctor(info) info['errx'] = name raise s_exc.SynErr(info)	[ "def", "result", "(", "retn", ")", ":", "ok", ",", "valu", "=", "retn", "if", "ok", ":", "return", "valu", "name", ",", "info", "=", "valu", "ctor", "=", "getattr", "(", "s_exc", ",", "name", ",", "None", ")", "if", "ctor", "is", "not", "None", ...	17.588235	24.647059
def random_choices(self, elements=('a', 'b', 'c'), length=None): """ Returns a list of random, non-unique elements from a passed object. If `elements` is a dictionary, the value will be used as a weighting element. For example:: random_element({"{{variable_1}}": 0.5, "{{var...	[ "def", "random_choices", "(", "self", ",", "elements", "=", "(", "'a'", ",", "'b'", ",", "'c'", ")", ",", "length", "=", "None", ")", ":", "return", "self", ".", "random_elements", "(", "elements", ",", "length", ",", "unique", "=", "False", ")" ]	39.470588	21.705882
def start_coordsys(self): """ Coordinate system at start of effect. All axes are parallel to the original vector evaluation location, with the origin moved to this effect's start point. :return: coordinate system at start of effect :rtype: :class:`CoordSys` """ ...	[ "def", "start_coordsys", "(", "self", ")", ":", "coordsys", "=", "copy", "(", "self", ".", "location", ")", "coordsys", ".", "origin", "=", "self", ".", "start_point", "return", "coordsys" ]	31.769231	14.846154
def list_objects(self, path='', relative=False, first_level=False, max_request_entries=None): """ List objects. Args: path (str): Path or URL. relative (bool): Path is relative to current root. first_level (bool): It True, returns only fi...	[ "def", "list_objects", "(", "self", ",", "path", "=", "''", ",", "relative", "=", "False", ",", "first_level", "=", "False", ",", "max_request_entries", "=", "None", ")", ":", "entries", "=", "0", "next_values", "=", "[", "]", "max_request_entries_arg", "=...	32.328571	19.5
def upgrade_plan(self, subid, vpsplanid, params=None): ''' /v1/server/upgrade_plan POST - account Upgrade the plan of a virtual machine. The virtual machine will be rebooted upon a successful upgrade. Link: https://www.vultr.com/api/#server_upgrade_plan ''' param...	[ "def", "upgrade_plan", "(", "self", ",", "subid", ",", "vpsplanid", ",", "params", "=", "None", ")", ":", "params", "=", "update_params", "(", "params", ",", "{", "'SUBID'", ":", "subid", ",", "'VPSPLANID'", ":", "vpsplanid", "}", ")", "return", "self", ...	36.923077	18.615385
def extract(self, text: str = None, extract_first_date_only: bool = False, additional_formats: List[str] = list(), use_default_formats: bool = False, ignore_dates_before: datetime.datetime = None, ignore_dates_after: datetime.datetime = Non...	[ "def", "extract", "(", "self", ",", "text", ":", "str", "=", "None", ",", "extract_first_date_only", ":", "bool", "=", "False", ",", "additional_formats", ":", "List", "[", "str", "]", "=", "list", "(", ")", ",", "use_default_formats", ":", "bool", "=", ...	54.137931	26.082759
def begin_transaction( self, database, options_=None, retry=google.api_core.gapic_v1.method.DEFAULT, timeout=google.api_core.gapic_v1.method.DEFAULT, metadata=None, ): """ Starts a new transaction. Example: >>> from google.cloud im...	[ "def", "begin_transaction", "(", "self", ",", "database", ",", "options_", "=", "None", ",", "retry", "=", "google", ".", "api_core", ".", "gapic_v1", ".", "method", ".", "DEFAULT", ",", "timeout", "=", "google", ".", "api_core", ".", "gapic_v1", ".", "m...	41.571429	25
def set_affinity_matrix(self, affinity_mat): """ Parameters ---------- affinity_mat : sparse matrix (N_obs, N_obs). The adjacency matrix to input. """ affinity_mat = check_array(affinity_mat, accept_sparse=sparse_formats) if affinity_mat.shape[0] != af...	[ "def", "set_affinity_matrix", "(", "self", ",", "affinity_mat", ")", ":", "affinity_mat", "=", "check_array", "(", "affinity_mat", ",", "accept_sparse", "=", "sparse_formats", ")", "if", "affinity_mat", ".", "shape", "[", "0", "]", "!=", "affinity_mat", ".", "...	39.636364	12.909091
def inverse_distance_to_grid(xp, yp, variable, grid_x, grid_y, r, gamma=None, kappa=None, min_neighbors=3, kind='cressman'): r"""Generate an inverse distance interpolation of the given points to a regular grid. Values are assigned to the given grid using inverse distance weighting ...	[ "def", "inverse_distance_to_grid", "(", "xp", ",", "yp", ",", "variable", ",", "grid_x", ",", "grid_y", ",", "r", ",", "gamma", "=", "None", ",", "kappa", "=", "None", ",", "min_neighbors", "=", "3", ",", "kind", "=", "'cressman'", ")", ":", "# Handle ...	39.36	23.72
def is_existing_object(did): """Return True if PID is for an object for which science bytes are stored locally. This excludes SIDs and PIDs for unprocessed replica requests, remote or non-existing revisions of local replicas and objects aggregated in Resource Maps. """ return d1_gmn.app.models.Sci...	[ "def", "is_existing_object", "(", "did", ")", ":", "return", "d1_gmn", ".", "app", ".", "models", ".", "ScienceObject", ".", "objects", ".", "filter", "(", "pid__did", "=", "did", ")", ".", "exists", "(", ")" ]	45.125	26.5
def isoformat(self): """Return the date formatted according to ISO. This is 'YYYY-MM-DD'. References: - http://www.w3.org/TR/NOTE-datetime - http://www.cl.cam.ac.uk/~mgk25/iso-time.html """ # return "%04d-%02d-%02d" % (self._year, self._month, self._day) ...	[ "def", "isoformat", "(", "self", ")", ":", "# return \"%04d-%02d-%02d\" % (self._year, self._month, self._day)", "return", "\"%s-%s-%s\"", "%", "(", "str", "(", "self", ".", "_year", ")", ".", "zfill", "(", "4", ")", ",", "str", "(", "self", ".", "_month", ")"...	37.181818	22.545455
def execute_sql_statement(sql_statement, query, user_name, session, cursor): """Executes a single SQL statement""" database = query.database db_engine_spec = database.db_engine_spec parsed_query = ParsedQuery(sql_statement) sql = parsed_query.stripped() SQL_MAX_ROWS = app.config.get('SQL_MAX_ROW...	[ "def", "execute_sql_statement", "(", "sql_statement", ",", "query", ",", "user_name", ",", "session", ",", "cursor", ")", ":", "database", "=", "query", ".", "database", "db_engine_spec", "=", "database", ".", "db_engine_spec", "parsed_query", "=", "ParsedQuery", ...	43.287879	19.484848
def get_git_version(git_path=None): """ Get the Git version. """ if git_path is None: git_path = GIT_PATH git_version = check_output([git_path, "--version"]).split()[2] return git_version	[ "def", "get_git_version", "(", "git_path", "=", "None", ")", ":", "if", "git_path", "is", "None", ":", "git_path", "=", "GIT_PATH", "git_version", "=", "check_output", "(", "[", "git_path", ",", "\"--version\"", "]", ")", ".", "split", "(", ")", "[", "2"...	29.285714	9.857143
def new_stat(self): """Look at the key and value that the user has entered into the stat configurator, and set them on the currently selected entity. """ key = self.ids.newstatkey.text value = self.ids.newstatval.text if not (key and value): # TODO im...	[ "def", "new_stat", "(", "self", ")", ":", "key", "=", "self", ".", "ids", ".", "newstatkey", ".", "text", "value", "=", "self", ".", "ids", ".", "newstatval", ".", "text", "if", "not", "(", "key", "and", "value", ")", ":", "# TODO implement some feedba...	34.555556	12.055556
def find_mounts(self): """Finds all mountpoints that are mounted to a directory matching :attr:`re_pattern` or originate from a directory matching :attr:`orig_re_pattern`. """ for mountpoint, (orig, fs, opts) in self.mountpoints.items(): if 'bind' not in opts and (re.match(s...	[ "def", "find_mounts", "(", "self", ")", ":", "for", "mountpoint", ",", "(", "orig", ",", "fs", ",", "opts", ")", "in", "self", ".", "mountpoints", ".", "items", "(", ")", ":", "if", "'bind'", "not", "in", "opts", "and", "(", "re", ".", "match", "...	52.666667	22.555556
def setup_logging(format="%(asctime)s - %(levelname)s - %(message)s", level='INFO'): """Setup the logging framework with a basic configuration""" try: import coloredlogs coloredlogs.install(fmt=format, level=level) except ImportError: logging.basicConfig(format=format, level=level)	[ "def", "setup_logging", "(", "format", "=", "\"%(asctime)s - %(levelname)s - %(message)s\"", ",", "level", "=", "'INFO'", ")", ":", "try", ":", "import", "coloredlogs", "coloredlogs", ".", "install", "(", "fmt", "=", "format", ",", "level", "=", "level", ")", ...	44.571429	19.142857
def load(self, filename): """ Load AEAD from a file. @param filename: File to read AEAD from @type filename: string """ aead_f = open(filename, "rb") buf = aead_f.read(1024) if buf.startswith(YHSM_AEAD_CRLF_File_Marker): buf = YHSM_AEAD_File_M...	[ "def", "load", "(", "self", ",", "filename", ")", ":", "aead_f", "=", "open", "(", "filename", ",", "\"rb\"", ")", "buf", "=", "aead_f", ".", "read", "(", "1024", ")", "if", "buf", ".", "startswith", "(", "YHSM_AEAD_CRLF_File_Marker", ")", ":", "buf", ...	44.434783	20.956522
def auth_password(self, username, password, event=None, fallback=True): """ Authenticate to the server using a password. The username and password are sent over an encrypted link. If an ``event`` is passed in, this method will return immediately, and the event will be triggered...	[ "def", "auth_password", "(", "self", ",", "username", ",", "password", ",", "event", "=", "None", ",", "fallback", "=", "True", ")", ":", "if", "(", "not", "self", ".", "active", ")", "or", "(", "not", "self", ".", "initial_kex_done", ")", ":", "# we...	49.095238	24.952381
def cleanup(self, sched, coro): """Remove this coro from the waiting for signal queue.""" try: sched.sigwait[self.name].remove((self, coro)) except ValueError: pass return True	[ "def", "cleanup", "(", "self", ",", "sched", ",", "coro", ")", ":", "try", ":", "sched", ".", "sigwait", "[", "self", ".", "name", "]", ".", "remove", "(", "(", "self", ",", "coro", ")", ")", "except", "ValueError", ":", "pass", "return", "True" ]	33.142857	15.714286
def get_washing_regex(): """Return a washing regex list.""" global _washing_regex if len(_washing_regex): return _washing_regex washing_regex = [ # Replace non and anti with non- and anti-. This allows a better # detection of keywords such as nonabelian. (re.compile(r"(\...	[ "def", "get_washing_regex", "(", ")", ":", "global", "_washing_regex", "if", "len", "(", "_washing_regex", ")", ":", "return", "_washing_regex", "washing_regex", "=", "[", "# Replace non and anti with non- and anti-. This allows a better", "# detection of keywords such as nonab...	37.30303	19.666667
def _view(self, ddoc, view, use_devmode=False, params=None, unrecognized_ok=False, passthrough=False): """Internal method to Execute a view (MapReduce) query :param string ddoc: Name of the design document :param string view: Name of the v...	[ "def", "_view", "(", "self", ",", "ddoc", ",", "view", ",", "use_devmode", "=", "False", ",", "params", "=", "None", ",", "unrecognized_ok", "=", "False", ",", "passthrough", "=", "False", ")", ":", "if", "params", ":", "if", "not", "isinstance", "(", ...	35.967742	16.258065
def present(name, profile="github", **kwargs): ''' Ensure a user is present .. code-block:: yaml ensure user test is present in github: github.present: - name: 'gitexample' The following parameters are required: name This is the github handle of the us...	[ "def", "present", "(", "name", ",", "profile", "=", "\"github\"", ",", "", "", "kwargs", ")", ":", "ret", "=", "{", "'name'", ":", "name", ",", "'changes'", ":", "{", "}", ",", "'result'", ":", "None", ",", "'comment'", ":", "''", "}", "target", ...	29.833333	24.537037
def random_array(shape, mean=128., std=20.): """Creates a uniformly distributed random array with the given `mean` and `std`. Args: shape: The desired shape mean: The desired mean (Default value = 128) std: The desired std (Default value = 20) Returns: Random numpy array of given `...	[ "def", "random_array", "(", "shape", ",", "mean", "=", "128.", ",", "std", "=", "20.", ")", ":", "x", "=", "np", ".", "random", ".", "random", "(", "shape", ")", "# normalize around mean=0, std=1", "x", "=", "(", "x", "-", "np", ".", "mean", "(", "...	35.9375	17.25
def longest_common_substring(s1, s2): """ References: # https://en.wikibooks.org/wiki/Algorithm_Implementation/Strings/Longest_common_substring#Python2 """ m = [[0] * (1 + len(s2)) for i in range(1 + len(s1))] longest, x_longest = 0, 0 for x in range(1, 1 + len(s1)): for y in ran...	[ "def", "longest_common_substring", "(", "s1", ",", "s2", ")", ":", "m", "=", "[", "[", "0", "]", "*", "(", "1", "+", "len", "(", "s2", ")", ")", "for", "i", "in", "range", "(", "1", "+", "len", "(", "s1", ")", ")", "]", "longest", ",", "x_l...	35.882353	11.058824
def rename(self, old_label_name, new_label_name): """ Take into account that a label has been renamed """ assert(old_label_name != new_label_name) self._bayes.pop(old_label_name) old_baye_dir = self._get_baye_dir(old_label_name) new_baye_dir = self._get_baye_dir(n...	[ "def", "rename", "(", "self", ",", "old_label_name", ",", "new_label_name", ")", ":", "assert", "(", "old_label_name", "!=", "new_label_name", ")", "self", ".", "_bayes", ".", "pop", "(", "old_label_name", ")", "old_baye_dir", "=", "self", ".", "_get_baye_dir"...	43.75	13.75
def _get_core_transform(self, resolution): """The projection for the stereonet as a matplotlib transform. This is primarily called by LambertAxes._set_lim_and_transforms.""" return self._base_transform(self._center_longitude, self._center_latitude, ...	[ "def", "_get_core_transform", "(", "self", ",", "resolution", ")", ":", "return", "self", ".", "_base_transform", "(", "self", ".", "_center_longitude", ",", "self", ".", "_center_latitude", ",", "resolution", ")" ]	58.5	7.666667
def compute_dominance_frontier(graph, domtree): """ Compute a dominance frontier based on the given post-dominator tree. This implementation is based on figure 2 of paper An Efficient Method of Computing Static Single Assignment Form by Ron Cytron, etc. :param graph: The graph where we want to c...	[ "def", "compute_dominance_frontier", "(", "graph", ",", "domtree", ")", ":", "df", "=", "{", "}", "# Perform a post-order search on the dominator tree", "for", "x", "in", "networkx", ".", "dfs_postorder_nodes", "(", "domtree", ")", ":", "if", "x", "not", "in", "...	26.785714	22.02381
def add_seqs_to_alignment(seqs, aln, params=None): """Returns an Alignment object from seqs and existing Alignment. seqs: a cogent.core.alignment.SequenceCollection object, or data that can be used to build one. aln: a cogent.core.alignment.Alignment object, or data that can be used to build one ...	[ "def", "add_seqs_to_alignment", "(", "seqs", ",", "aln", ",", "params", "=", "None", ")", ":", "if", "not", "params", ":", "params", "=", "{", "}", "#create SequenceCollection object from seqs", "seqs_collection", "=", "SequenceCollection", "(", "seqs", ")", "#C...	33.314286	17.757143
def once(self): """ Returns a function that will be executed at most one time, no matter how often you call it. Useful for lazy initialization. """ ns = self.Namespace() ns.memo = None ns.run = False def work_once(args, *kwargs): if ns.run i...	[ "def", "once", "(", "self", ")", ":", "ns", "=", "self", ".", "Namespace", "(", ")", "ns", ".", "memo", "=", "None", "ns", ".", "run", "=", "False", "def", "work_once", "(", "", "args", ",", "", "*", "kwargs", ")", ":", "if", "ns", ".", "ru...	28.5	16.5
def delete_external_nodes(sender, **kwargs): """ sync by deleting nodes from external layers when needed """ node = kwargs['instance'] if node.layer.is_external is False or not hasattr(node.layer, 'external') or node.layer.external.synchronizer_path is None: return False if hasattr(node, 'exte...	[ "def", "delete_external_nodes", "(", "sender", ",", "", "", "kwargs", ")", ":", "node", "=", "kwargs", "[", "'instance'", "]", "if", "node", ".", "layer", ".", "is_external", "is", "False", "or", "not", "hasattr", "(", "node", ".", "layer", ",", "'ex...	40.384615	21.692308
def ensure_self(func): """ Decorator that can be used to ensure 'self' is the first argument on a task method. This only needs to be used with task methods that are used as a callback to a chord or in link_error and is really just a hack to get around https://github.com/celery/celery/issues/2137 U...	[ "def", "ensure_self", "(", "func", ")", ":", "@", "wraps", "(", "func", ")", "def", "inner", "(", "", "args", ",", "", "*", "kwargs", ")", ":", "try", ":", "self", "=", "kwargs", ".", "pop", "(", "'this'", ")", "if", "len", "(", "args", ")", ...	27.843137	24.705882
def _zfs_image_create(vm_name, pool, disk_name, hostname_property_name, sparse_volume, disk_size, disk_image_name): ''' Clones an existing image, or creates a new one. When cl...	[ "def", "_zfs_image_create", "(", "vm_name", ",", "pool", ",", "disk_name", ",", "hostname_property_name", ",", "sparse_volume", ",", "disk_size", ",", "disk_image_name", ")", ":", "if", "not", "disk_image_name", "and", "not", "disk_size", ":", "raise", "CommandExe...	35.820896	17.701493
def canonical_name(sgf_name): """Keep filename and some date folders""" sgf_name = os.path.normpath(sgf_name) assert sgf_name.endswith('.sgf'), sgf_name # Strip off '.sgf' sgf_name = sgf_name[:-4] # Often eval is inside a folder with the run name. # include from folder before /eval/ if part...	[ "def", "canonical_name", "(", "sgf_name", ")", ":", "sgf_name", "=", "os", ".", "path", ".", "normpath", "(", "sgf_name", ")", "assert", "sgf_name", ".", "endswith", "(", "'.sgf'", ")", ",", "sgf_name", "# Strip off '.sgf'", "sgf_name", "=", "sgf_name", "[",...	33	14.666667
def get_history(self): """Returns the history from cache or DB or a newly created one.""" if hasattr(self, '_history'): return self._history try: self._history = APICallDayHistory.objects.get( user=self.user, creation_date=now().date()) except APIC...	[ "def", "get_history", "(", "self", ")", ":", "if", "hasattr", "(", "self", ",", "'_history'", ")", ":", "return", "self", ".", "_history", "try", ":", "self", ".", "_history", "=", "APICallDayHistory", ".", "objects", ".", "get", "(", "user", "=", "sel...	43.181818	12.636364
def entries_view(self, request, form_id): """ Displays the form entries in a HTML table with option to export as CSV file. """ if request.POST.get("back"): change_url = admin_url(Form, "change", form_id) return HttpResponseRedirect(change_url) form...	[ "def", "entries_view", "(", "self", ",", "request", ",", "form_id", ")", ":", "if", "request", ".", "POST", ".", "get", "(", "\"back\"", ")", ":", "change_url", "=", "admin_url", "(", "Form", ",", "\"change\"", ",", "form_id", ")", "return", "HttpRespons...	49.981132	15.301887
def _create_regex_pattern_add_optional_spaces_to_word_characters(word): r"""Add the regex special characters (\s*) to allow optional spaces. :param word: (string) the word to be inserted into a regex pattern. :return: (string) the regex pattern for that word with optional spaces betwe...	[ "def", "_create_regex_pattern_add_optional_spaces_to_word_characters", "(", "word", ")", ":", "new_word", "=", "u\"\"", "for", "ch", "in", "word", ":", "if", "ch", ".", "isspace", "(", ")", ":", "new_word", "+=", "ch", "else", ":", "new_word", "+=", "ch", "+...	35.785714	19.571429
def genes_to_json(store, query): """Fetch matching genes and convert to JSON.""" gene_query = store.hgnc_genes(query, search=True) json_terms = [{'name': "{} \| {} ({})".format(gene['hgnc_id'], gene['hgnc_symbol'], ', '.join(gene['aliases'])), ...	[ "def", "genes_to_json", "(", "store", ",", "query", ")", ":", "gene_query", "=", "store", ".", "hgnc_genes", "(", "query", ",", "search", "=", "True", ")", "json_terms", "=", "[", "{", "'name'", ":", "\"{} \| {} ({})\"", ".", "format", "(", "gene", "[", ...	55	21.142857
def check(self, orb): """Method that check whether or not the listener is triggered Args: orb (Orbit): Return: bool: True if there is a zero-crossing for the parameter watched by the listener """ return self.prev is not None and np.sign(self(orb)) != np...	[ "def", "check", "(", "self", ",", "orb", ")", ":", "return", "self", ".", "prev", "is", "not", "None", "and", "np", ".", "sign", "(", "self", "(", "orb", ")", ")", "!=", "np", ".", "sign", "(", "self", "(", "self", ".", "prev", ")", ")" ]	30.181818	27.818182
def _init_hdrgo_sortby(self, hdrgo_sortby, sortby): """Initialize header sort function.""" if hdrgo_sortby is not None: return hdrgo_sortby if sortby is not None: return sortby return self.sortby	[ "def", "_init_hdrgo_sortby", "(", "self", ",", "hdrgo_sortby", ",", "sortby", ")", ":", "if", "hdrgo_sortby", "is", "not", "None", ":", "return", "hdrgo_sortby", "if", "sortby", "is", "not", "None", ":", "return", "sortby", "return", "self", ".", "sortby" ]	35	9
def _connect(cls): """ Connect signal to current model """ post_save.connect( notify_items, sender=cls, dispatch_uid='knocker_{0}'.format(cls.__name__) )	[ "def", "_connect", "(", "cls", ")", ":", "post_save", ".", "connect", "(", "notify_items", ",", "sender", "=", "cls", ",", "dispatch_uid", "=", "'knocker_{0}'", ".", "format", "(", "cls", ".", "__name__", ")", ")" ]	26.25	11.25
def _remove_bound_conditions(agent, keep_criterion): """Removes bound conditions of agent such that keep_criterion is False. Parameters ---------- agent: Agent The agent whose bound conditions we evaluate keep_criterion: function Evaluates removal_criterion(a) for each agent a in a ...	[ "def", "_remove_bound_conditions", "(", "agent", ",", "keep_criterion", ")", ":", "new_bc", "=", "[", "]", "for", "ind", "in", "range", "(", "len", "(", "agent", ".", "bound_conditions", ")", ")", ":", "if", "keep_criterion", "(", "agent", ".", "bound_cond...	39.125	18.75
def get_by(self, field, value): """ Gets the list of firmware baseline resources managed by the appliance. Optional parameters can be used to filter the list of resources returned. The search is case-insensitive. Args: field: Field name to filter. value:...	[ "def", "get_by", "(", "self", ",", "field", ",", "value", ")", ":", "firmwares", "=", "self", ".", "get_all", "(", ")", "matches", "=", "[", "]", "for", "item", "in", "firmwares", ":", "if", "item", ".", "get", "(", "field", ")", "==", "value", "...	29.55	16.85
def exists(self, index, doc_type, id, **query_params): """ Return if a document exists """ path = make_path(index, doc_type, id) return self._send_request('HEAD', path, params=query_params)	[ "def", "exists", "(", "self", ",", "index", ",", "doc_type", ",", "id", ",", "", "", "query_params", ")", ":", "path", "=", "make_path", "(", "index", ",", "doc_type", ",", "id", ")", "return", "self", ".", "_send_request", "(", "'HEAD'", ",", "pat...	37.333333	8.666667
def from_molecule(cls, mol, theory, charge=None, spin_multiplicity=None, basis_set="6-31g", basis_set_option="cartesian", title=None, operation="optimize", theory_directives=None, alternate_directives=None): """ Very flexible arguments to...	[ "def", "from_molecule", "(", "cls", ",", "mol", ",", "theory", ",", "charge", "=", "None", ",", "spin_multiplicity", "=", "None", ",", "basis_set", "=", "\"6-31g\"", ",", "basis_set_option", "=", "\"cartesian\"", ",", "title", "=", "None", ",", "operation", ...	52.096774	23.290323
def get_registry(self, registry): '''Description Find the registry and return its json description Arguments - registry: Full hostname/port of registry. Eg. myrepo.example.com:5000 Success Return Value A JSON object representing the registry. ...	[ "def", "get_registry", "(", "self", ",", "registry", ")", ":", "if", "self", ".", "_registry_string_is_valid", "(", "registry", ")", ":", "return", "[", "False", ",", "\"input registry name cannot contain '/' characters - valid registry names are of the form <host>:<port> whe...	41.578947	27.263158
def get_graph_by_name_version(self, name: str, version: str) -> Optional[BELGraph]: """Load the BEL graph with the given name, or allows for specification of version.""" network = self.get_network_by_name_version(name, version) if network is None: return return network.as_b...	[ "def", "get_graph_by_name_version", "(", "self", ",", "name", ":", "str", ",", "version", ":", "str", ")", "->", "Optional", "[", "BELGraph", "]", ":", "network", "=", "self", ".", "get_network_by_name_version", "(", "name", ",", "version", ")", "if", "net...	39.625	24
def store(self, name, data, version, size=0, compressed=False, digest=None, logical_size=None): """Adds a new file to the storage. If the file with the same name existed before, it's not guaranteed that the link for the old version will exist until the operation co...	[ "def", "store", "(", "self", ",", "name", ",", "data", ",", "version", ",", "size", "=", "0", ",", "compressed", "=", "False", ",", "digest", "=", "None", ",", "logical_size", "=", "None", ")", ":", "with", "_exclusive_lock", "(", "self", ".", "_lock...	49.243478	22.556522
def secretly(reactor, action, system=None, username=None, prompt="Password:"): """ Call the given C{action} with a secret value. @return: a L{Deferred} that fires with C{action}'s result, or L{NoSecretError} if no secret can be retrieved. """ if system is None: system =...	[ "def", "secretly", "(", "reactor", ",", "action", ",", "system", "=", "None", ",", "username", "=", "None", ",", "prompt", "=", "\"Password:\"", ")", ":", "if", "system", "is", "None", ":", "system", "=", "action", ".", "__module__", "if", "system", "=...	34.925926	13
def OrEvent(events): ''' Parameters ---------- events : list(threading.Event) List of events. Returns ------- threading.Event Event that is set when at least one* of the events in :data:`events` is set. ''' or_event = threading.Event() def changed():...	[ "def", "OrEvent", "(", "*", "events", ")", ":", "or_event", "=", "threading", ".", "Event", "(", ")", "def", "changed", "(", ")", ":", "'''\n Set ``or_event`` if any of the specified events have been set.\n '''", "bools", "=", "[", "event_i", ".", "is_...	25.03125	23.53125
def get_workspaces(self): """ Get a list of workspaces. Returns JSON-like data, not a Con instance. You might want to try the :meth:`Con.workspaces` instead if the info contained here is too little. :rtype: List of :class:`WorkspaceReply`. """ data = self.messa...	[ "def", "get_workspaces", "(", "self", ")", ":", "data", "=", "self", ".", "message", "(", "MessageType", ".", "GET_WORKSPACES", ",", "''", ")", "return", "json", ".", "loads", "(", "data", ",", "object_hook", "=", "WorkspaceReply", ")" ]	33.583333	21.416667
def _delete_forever_values(self, forever_key): """ Delete all of the keys that have been stored forever. :type forever_key: str """ forever = self._store.connection().lrange(forever_key, 0, -1) if len(forever) > 0: self._store.connection().delete(*forever)	[ "def", "_delete_forever_values", "(", "self", ",", "forever_key", ")", ":", "forever", "=", "self", ".", "_store", ".", "connection", "(", ")", ".", "lrange", "(", "forever_key", ",", "0", ",", "-", "1", ")", "if", "len", "(", "forever", ")", ">", "0...	30.9	17.1
def _maybe_restore_empty_groups(self, combined): """Our index contained empty groups (e.g., from a resampling). If we reduced on that dimension, we want to restore the full index. """ if (self._full_index is not None and self._group.name in combined.dims): ind...	[ "def", "_maybe_restore_empty_groups", "(", "self", ",", "combined", ")", ":", "if", "(", "self", ".", "_full_index", "is", "not", "None", "and", "self", ".", "_group", ".", "name", "in", "combined", ".", "dims", ")", ":", "indexers", "=", "{", "self", ...	48	11
def _reset_on_error(self, server, func, args, *kwargs): """Execute an operation. Reset the server on network error. Returns fn()'s return value on success. On error, clears the server's pool and marks the server Unknown. Re-raises any exception thrown by fn(). """ try...	[ "def", "_reset_on_error", "(", "self", ",", "server", ",", "func", ",", "", "args", ",", "", "", "kwargs", ")", ":", "try", ":", "return", "func", "(", "", "args", ",", "", "", "kwargs", ")", "except", "NetworkTimeout", ":", "# The socket has bee...	35.875	17.375
def display_config(self): """Set up status display if option selected. NB: this method assumes that the first entry is the iteration count and the last is the rho value. """ if self.opt['Verbose']: hdrtxt = type(self).hdrtxt() # Call utility function to c...	[ "def", "display_config", "(", "self", ")", ":", "if", "self", ".", "opt", "[", "'Verbose'", "]", ":", "hdrtxt", "=", "type", "(", "self", ")", ".", "hdrtxt", "(", ")", "# Call utility function to construct status display formatting", "self", ".", "hdrstr", ","...	43.538462	19.153846
def visit_list(self, node, args, kwargs): """As transformers may return lists in some places this method can be used to enforce a list as return value. """ rv = self.visit(node, args, **kwargs) if not isinstance(rv, list): rv = [rv] return rv	[ "def", "visit_list", "(", "self", ",", "node", ",", "", "args", ",", "", "", "kwargs", ")", ":", "rv", "=", "self", ".", "visit", "(", "node", ",", "", "args", ",", "", "", "kwargs", ")", "if", "not", "isinstance", "(", "rv", ",", "list",...	37.375	8.75
def boolean(value): ''' Convert the content of a string (or a number) to a boolean. Do nothing when input value is already a boolean. This filter accepts usual values for ``True`` and ``False``: "0", "f", "false", "n", etc. ''' if value is None or isinstance(value, bool): return val...	[ "def", "boolean", "(", "value", ")", ":", "if", "value", "is", "None", "or", "isinstance", "(", "value", ",", "bool", ")", ":", "return", "value", "try", ":", "return", "bool", "(", "int", "(", "value", ")", ")", "except", "ValueError", ":", "lower_v...	31.681818	20.5
def exponentiate_commuting_pauli_sum(pauli_sum): """ Returns a function that maps all substituent PauliTerms and sums them into a program. NOTE: Use this function with care. Substituent PauliTerms should commute. :param PauliSum pauli_sum: PauliSum to exponentiate. :returns: A function that paramet...	[ "def", "exponentiate_commuting_pauli_sum", "(", "pauli_sum", ")", ":", "if", "not", "isinstance", "(", "pauli_sum", ",", "PauliSum", ")", ":", "raise", "TypeError", "(", "\"Argument 'pauli_sum' must be a PauliSum.\"", ")", "fns", "=", "[", "exponential_map", "(", "t...	35.333333	21.111111
def _read_subtitles(self, lines): """ Read text fragments from a subtitles format text file. :param list lines: the lines of the subtitles text file :raises: ValueError: if the id regex is not valid """ self.log(u"Parsing fragments from subtitles text format") id...	[ "def", "_read_subtitles", "(", "self", ",", "lines", ")", ":", "self", ".", "log", "(", "u\"Parsing fragments from subtitles text format\"", ")", "id_format", "=", "self", ".", "_get_id_format", "(", ")", "lines", "=", "[", "line", ".", "strip", "(", ")", "f...	38	13.185185
def output_reduce(input_file, path=True, pdb_name=None, force=False): """Runs Reduce on a pdb or mmol file and creates a new file with the output. Parameters ---------- input_file : str or pathlib.Path Path to file to run Reduce on. path : bool True if input_file is a path. pdb_n...	[ "def", "output_reduce", "(", "input_file", ",", "path", "=", "True", ",", "pdb_name", "=", "None", ",", "force", "=", "False", ")", ":", "if", "path", ":", "output_path", "=", "reduce_output_path", "(", "path", "=", "input_file", ")", "else", ":", "outpu...	31.354839	18.16129
def get_unresolved_properties_by_inheritance(self, timeperiod): """ Fill full properties with template if needed for the unresolved values (example: sunday ETCETC) :return: None """ # Ok, I do not have prop, Maybe my templates do? # Same story for plus for...	[ "def", "get_unresolved_properties_by_inheritance", "(", "self", ",", "timeperiod", ")", ":", "# Ok, I do not have prop, Maybe my templates do?", "# Same story for plus", "for", "i", "in", "timeperiod", ".", "templates", ":", "template", "=", "self", ".", "templates", "[",...	40	11.090909
def _set_auto_fields(self, model_obj): """Set the values of the auto field using counter""" for field_name, field_obj in \ self.entity_cls.meta_.auto_fields: counter_key = f'{self.schema_name}_{field_name}' if not (field_name in model_obj and model_obj[field_name]...	[ "def", "_set_auto_fields", "(", "self", ",", "model_obj", ")", ":", "for", "field_name", ",", "field_obj", "in", "self", ".", "entity_cls", ".", "meta_", ".", "auto_fields", ":", "counter_key", "=", "f'{self.schema_name}_{field_name}'", "if", "not", "(", "field_...	48.692308	17.769231
def remove_existing_pidfile(pidfile_path): """ Remove the named PID file if it exists. Removing a PID file that doesn't already exist puts us in the desired state, so we ignore the condition if the file does not exist. """ try: os.remove(pidfile_path) except OSError...	[ "def", "remove_existing_pidfile", "(", "pidfile_path", ")", ":", "try", ":", "os", ".", "remove", "(", "pidfile_path", ")", "except", "OSError", "as", "exc", ":", "if", "exc", ".", "errno", "==", "errno", ".", "ENOENT", ":", "pass", "else", ":", "raise" ...	26.733333	19.933333
def open_as_needed(filename): """Return a file-object given either a filename or an object. Handles opening with the right class based on the file extension. """ if hasattr(filename, 'read'): return filename if filename.endswith('.bz2'): return bz2.BZ2File(filename, 'rb') elif...	[ "def", "open_as_needed", "(", "filename", ")", ":", "if", "hasattr", "(", "filename", ",", "'read'", ")", ":", "return", "filename", "if", "filename", ".", "endswith", "(", "'.bz2'", ")", ":", "return", "bz2", ".", "BZ2File", "(", "filename", ",", "'rb'"...	28.2	15.933333
def format_labels(labels): """ Convert a dictionary of labels into a comma separated string """ if labels: return ','.join(['{}={}'.format(k, v) for k, v in labels.items()]) else: return ''	[ "def", "format_labels", "(", "labels", ")", ":", "if", "labels", ":", "return", "','", ".", "join", "(", "[", "'{}={}'", ".", "format", "(", "k", ",", "v", ")", "for", "k", ",", "v", "in", "labels", ".", "items", "(", ")", "]", ")", "else", ":"...	35.333333	21.333333
def keep_alive(self, val: bool) -> None: """Set keep-alive connection mode. :param bool val: new state. """ self._keepalive = val if self._keepalive_handle: self._keepalive_handle.cancel() self._keepalive_handle = None	[ "def", "keep_alive", "(", "self", ",", "val", ":", "bool", ")", "->", "None", ":", "self", ".", "_keepalive", "=", "val", "if", "self", ".", "_keepalive_handle", ":", "self", ".", "_keepalive_handle", ".", "cancel", "(", ")", "self", ".", "_keepalive_han...	30.555556	7.333333
def pypirc_temp(index_url): """ Create a temporary pypirc file for interaction with twine """ pypirc_file = tempfile.NamedTemporaryFile(suffix='.pypirc', delete=False) print(pypirc_file.name) with open(pypirc_file.name, 'w') as fh: fh.write(PYPIRC_TEMPLATE.format(index_name=PYPIRC_TEMP_INDEX_NAM...	[ "def", "pypirc_temp", "(", "index_url", ")", ":", "pypirc_file", "=", "tempfile", ".", "NamedTemporaryFile", "(", "suffix", "=", "'.pypirc'", ",", "delete", "=", "False", ")", "print", "(", "pypirc_file", ".", "name", ")", "with", "open", "(", "pypirc_file",...	52.285714	19.285714
def _log_graphql_error(self, query, data): '''Log a ``{"errors": [...]}`` GraphQL return and return itself. :param query: the GraphQL query that triggered the result. :type query: str :param data: the decoded JSON object. :type data: dict :return: the input ``data`` ...	[ "def", "_log_graphql_error", "(", "self", ",", "query", ",", "data", ")", ":", "if", "isinstance", "(", "query", ",", "bytes", ")", ":", "# pragma: no cover", "query", "=", "query", ".", "decode", "(", "'utf-8'", ")", "elif", "not", "isinstance", "(", "q...	37.871795	18.897436
def plot(self, df_data, center=False, save=False, save_name=None, save_path='saved', dated=True, notebook=True): "df_data format is a dataframe with columns x, y, z (required), and style, filter (optional)" data = df_data.to_json(orient='records') options = self.to_dict() re...	[ "def", "plot", "(", "self", ",", "df_data", ",", "center", "=", "False", ",", "save", "=", "False", ",", "save_name", "=", "None", ",", "save_path", "=", "'saved'", ",", "dated", "=", "True", ",", "notebook", "=", "True", ")", ":", "data", "=", "df...	65.428571	27.714286
def get_activity_query_session(self): """Gets the ``OsidSession`` associated with the activity query service. return: (osid.learning.ActivityQuerySession) - a ``ActivityQuerySession`` raise: OperationFailed - unable to complete request raise: Unimplemented - ``supports...	[ "def", "get_activity_query_session", "(", "self", ")", ":", "if", "not", "self", ".", "supports_activity_query", "(", ")", ":", "raise", "errors", ".", "Unimplemented", "(", ")", "# pylint: disable=no-member", "return", "sessions", ".", "ActivityQuerySession", "(", ...	42.375	14.625
def format_units(self, value, unit="B", optimal=5, auto=True, si=False): """ Takes a value and formats it for user output, we can choose the unit to use eg B, MiB, kbits/second. This is mainly for use with bytes/bits it converts the value into a human readable form. It has various ...	[ "def", "format_units", "(", "self", ",", "value", ",", "unit", "=", "\"B\"", ",", "optimal", "=", "5", ",", "auto", "=", "True", ",", "si", "=", "False", ")", ":", "UNITS", "=", "\"KMGTPEZY\"", "DECIMAL_SIZE", "=", "1000", "BINARY_SIZE", "=", "1024", ...	36.764045	19.775281
def _transform_col(self, x, i): """Encode one categorical column into average target values. Args: x (pandas.Series): a categorical column to encode i (int): column index Returns: x (pandas.Series): a column with labels. """ return x.fillna(NAN...	[ "def", "_transform_col", "(", "self", ",", "x", ",", "i", ")", ":", "return", "x", ".", "fillna", "(", "NAN_INT", ")", ".", "map", "(", "self", ".", "target_encoders", "[", "i", "]", ")", ".", "fillna", "(", "self", ".", "target_mean", ")" ]	41.222222	16.222222
def reset(self): ''' Reset the state of the market (attributes in sow_vars, etc) to some user-defined initial state, and erase the histories of tracked variables. Parameters ---------- none Returns ------- none ''' for var_name in...	[ "def", "reset", "(", "self", ")", ":", "for", "var_name", "in", "self", ".", "track_vars", ":", "# Reset the history of tracked variables", "setattr", "(", "self", ",", "var_name", "+", "'_hist'", ",", "[", "]", ")", "for", "var_name", "in", "self", ".", "...	35.25	27.55
def ParseStatusRow(self, parser_mediator, query, row, **unused_kwargs): """Parses a contact row from the database. Args: parser_mediator (ParserMediator): mediates interactions between parsers and other components, such as storage and dfvfs. query (str): query that created the row. ...	[ "def", "ParseStatusRow", "(", "self", ",", "parser_mediator", ",", "query", ",", "row", ",", "", "", "unused_kwargs", ")", ":", "query_hash", "=", "hash", "(", "query", ")", "event_data", "=", "TwitterIOSStatusEventData", "(", ")", "event_data", ".", "favo...	44.230769	19.128205
def register_plugin(self, name): """Load and register a plugin given its package name.""" logger.info("Registering plugin: " + name) module = importlib.import_module(name) module.register_plugin(self)	[ "def", "register_plugin", "(", "self", ",", "name", ")", ":", "logger", ".", "info", "(", "\"Registering plugin: \"", "+", "name", ")", "module", "=", "importlib", ".", "import_module", "(", "name", ")", "module", ".", "register_plugin", "(", "self", ")" ]	45.6	5.6
def extract(data, items, out_dir=None): """Extract germline calls for the given sample, if tumor only. """ if vcfutils.get_paired_phenotype(data): if len(items) == 1: germline_vcf = _remove_prioritization(data["vrn_file"], data, out_dir) germline_vcf = vcfutils.bgzip_and_inde...	[ "def", "extract", "(", "data", ",", "items", ",", "out_dir", "=", "None", ")", ":", "if", "vcfutils", ".", "get_paired_phenotype", "(", "data", ")", ":", "if", "len", "(", "items", ")", "==", "1", ":", "germline_vcf", "=", "_remove_prioritization", "(", ...	46.888889	16.333333
def list_configured_members(lbn, profile='default'): ''' Return a list of member workers from the configuration files CLI Examples: .. code-block:: bash salt '' modjk.list_configured_members loadbalancer1 salt '' modjk.list_configured_members loadbalancer1 other-profile ''' ...	[ "def", "list_configured_members", "(", "lbn", ",", "profile", "=", "'default'", ")", ":", "config", "=", "dump_config", "(", "profile", ")", "try", ":", "ret", "=", "config", "[", "'worker.{0}.balance_workers'", ".", "format", "(", "lbn", ")", "]", "except",...	24.95	27.65
def deny_assignments(self): """Instance depends on the API version: * 2018-07-01-preview: :class:`DenyAssignmentsOperations<azure.mgmt.authorization.v2018_07_01_preview.operations.DenyAssignmentsOperations>` """ api_version = self._get_api_version('deny_assignments') if api_v...	[ "def", "deny_assignments", "(", "self", ")", ":", "api_version", "=", "self", ".", "_get_api_version", "(", "'deny_assignments'", ")", "if", "api_version", "==", "'2018-07-01-preview'", ":", "from", ".", "v2018_07_01_preview", ".", "operations", "import", "DenyAssig...	63.090909	39.636364
def refresh_content(self, order=None, name=None): """ Re-download all submissions and reset the page index """ order = order or self.content.order # Preserve the query if staying on the current page if name is None: query = self.content.query else: ...	[ "def", "refresh_content", "(", "self", ",", "order", "=", "None", ",", "name", "=", "None", ")", ":", "order", "=", "order", "or", "self", ".", "content", ".", "order", "# Preserve the query if staying on the current page", "if", "name", "is", "None", ":", "...	33.958333	17.208333
def _get_template(self, root=None, **metadata_defaults): """ Iterate over items metadata_defaults {prop: val, ...} to populate template """ if root is None: if self._data_map is None: self._init_data_map() root = self._xml_root = self._data_map['_root'] ...	[ "def", "_get_template", "(", "self", ",", "root", "=", "None", ",", "", "", "metadata_defaults", ")", ":", "if", "root", "is", "None", ":", "if", "self", ".", "_data_map", "is", "None", ":", "self", ".", "_init_data_map", "(", ")", "root", "=", "se...	35.111111	19.555556
def grammatical_join(l, initial_joins=", ", final_join=" and "): """ Display a list of items nicely, with a different string before the final item. Useful for using lists in sentences. >>> grammatical_join(['apples', 'pears', 'bananas']) 'apples, pears and bananas' >>> grammatical_join(['apple...	[ "def", "grammatical_join", "(", "l", ",", "initial_joins", "=", "\", \"", ",", "final_join", "=", "\" and \"", ")", ":", "# http://stackoverflow.com/questions/19838976/grammatical-list-join-in-python", "return", "initial_joins", ".", "join", "(", "l", "[", ":", "-", "...	44.611111	23.944444
def call(self, scope, args=[]): """Call mixin. Parses a copy of the mixins body in the current scope and returns it. args: scope (Scope): current scope args (list): arguments raises: SyntaxError returns: list or False """ ...	[ "def", "call", "(", "self", ",", "scope", ",", "args", "=", "[", "]", ")", ":", "ret", "=", "False", "if", "args", ":", "args", "=", "[", "[", "a", ".", "parse", "(", "scope", ")", "if", "isinstance", "(", "a", ",", "Expression", ")", "else", ...	29.814815	14.259259
def get_order_line_item_by_id(cls, order_line_item_id, **kwargs): """Find OrderLineItem Return single instance of OrderLineItem by its ID. This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async=True >>> thread = api.get_o...	[ "def", "get_order_line_item_by_id", "(", "cls", ",", "order_line_item_id", ",", "", "", "kwargs", ")", ":", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'async'", ")", ":", "return", "cls", ".", "_get_order...	45.142857	22.761905
def conversations(self, getsrcdst=None, **kargs): """Graphes a conversations between sources and destinations and display it (using graphviz and imagemagick) getsrcdst: a function that takes an element of the list and returns the source, the destination and optionally ...	[ "def", "conversations", "(", "self", ",", "getsrcdst", "=", "None", ",", "", "", "kargs", ")", ":", "if", "getsrcdst", "is", "None", ":", "def", "getsrcdst", "(", "pkt", ")", ":", "\"\"\"Extract src and dst addresses\"\"\"", "if", "'IP'", "in", "pkt", ":...	46.488372	16.744186
def uavionix_adsb_out_dynamic_send(self, utcTime, gpsLat, gpsLon, gpsAlt, gpsFix, numSats, baroAltMSL, accuracyHor, accuracyVert, accuracyVel, velVert, velNS, VelEW, emergencyStatus, state, squawk, force_mavlink1=False): ''' Dynamic data used to generate ADS-B out transponder data (send ...	[ "def", "uavionix_adsb_out_dynamic_send", "(", "self", ",", "utcTime", ",", "gpsLat", ",", "gpsLon", ",", "gpsAlt", ",", "gpsFix", ",", "numSats", ",", "baroAltMSL", ",", "accuracyHor", ",", "accuracyVert", ",", "accuracyVel", ",", "velVert", ",", "velNS", ",",...	108.869565	79.478261
def _output_digraph(self, target): """Graphviz format depmap output handler.""" color_by_type = {} def maybe_add_type(dep, dep_id): """Add a class type to a dependency id if --show-types is passed.""" return dep_id if not self.show_types else '\\n'.join((dep_id, dep.__class__.__name__)) de...	[ "def", "_output_digraph", "(", "self", ",", "target", ")", ":", "color_by_type", "=", "{", "}", "def", "maybe_add_type", "(", "dep", ",", "dep_id", ")", ":", "\"\"\"Add a class type to a dependency id if --show-types is passed.\"\"\"", "return", "dep_id", "if", "not",...	38.755556	23.111111
def main(cls): """Main entry point of Laniakea. """ args = cls.parse_args() if args.focus: Focus.init() else: Focus.disable() logging.basicConfig(format='[Laniakea] %(asctime)s %(levelname)s: %(message)s', level=args.v...	[ "def", "main", "(", "cls", ")", ":", "args", "=", "cls", ".", "parse_args", "(", ")", "if", "args", ".", "focus", ":", "Focus", ".", "init", "(", ")", "else", ":", "Focus", ".", "disable", "(", ")", "logging", ".", "basicConfig", "(", "format", "...	34.392157	25.078431
def get_style(self, name, workspace=None): ''' returns a single style object. Will return None if no style is found. Will raise an error if more than one style with the same name is found. ''' styles = self.get_styles(names=name, workspaces=workspace) retur...	[ "def", "get_style", "(", "self", ",", "name", ",", "workspace", "=", "None", ")", ":", "styles", "=", "self", ".", "get_styles", "(", "names", "=", "name", ",", "workspaces", "=", "workspace", ")", "return", "self", ".", "_return_first_item", "(", "style...	38.333333	20.111111
def _computeAsymptoticCovarianceMatrix(self, W, N_k, method=None): """Compute estimate of the asymptotic covariance matrix. Parameters ---------- W : np.ndarray, shape=(N, K), dtype='float' The normalized weight matrix for snapshots and states. W[n, k] is the wei...	[ "def", "_computeAsymptoticCovarianceMatrix", "(", "self", ",", "W", ",", "N_k", ",", "method", "=", "None", ")", ":", "# Set 'svd-ew' as default if uncertainty method specified as None.", "if", "method", "==", "None", ":", "method", "=", "'svd-ew'", "# Get dimensions of...	42.130841	26.719626
def _encrypt_password(self, password): """encrypt the password for given mode """ if self.encryption_mode.lower() == 'crypt': return self._crypt_password(password) elif self.encryption_mode.lower() == 'md5': return self._md5_password(password) elif self.encryption...	[ "def", "_encrypt_password", "(", "self", ",", "password", ")", ":", "if", "self", ".", "encryption_mode", ".", "lower", "(", ")", "==", "'crypt'", ":", "return", "self", ".", "_crypt_password", "(", "password", ")", "elif", "self", ".", "encryption_mode", ...	46.8	11.6
def _manage_cmd(cmd, settings=None): # type: () -> None """ Run django ./manage.py command manually. This function eliminates the need for having ``manage.py`` (reduces file clutter). """ import sys from os import environ from peltak.core import conf from peltak.core import context ...	[ "def", "_manage_cmd", "(", "cmd", ",", "settings", "=", "None", ")", ":", "# type: () -> None", "import", "sys", "from", "os", "import", "environ", "from", "peltak", ".", "core", "import", "conf", "from", "peltak", ".", "core", "import", "context", "from", ...	30.32	19.72
def _parseline(self, line): """ All lines come to this method. :param line: a to parse :returns: the number of rows to jump and parse the next data line or return the code error -1 """ sline = line.split(SEPARATOR) segment = sline[0] handlers = { ...	[ "def", "_parseline", "(", "self", ",", "line", ")", ":", "sline", "=", "line", ".", "split", "(", "SEPARATOR", ")", "segment", "=", "sline", "[", "0", "]", "handlers", "=", "{", "SEGMENT_HEADER", ":", "self", ".", "_handle_header", ",", "SEGMENT_EOF", ...	33.157895	12.315789
def cyk(grammar, parse_sequence): # type: (Grammar, Iterable[Any]) -> Nonterminal """ Perform CYK algorithm. :param grammar: Grammar to use in Chomsky Normal Form. :param parse_sequence: Input sequence to parse. :return: Instance of root Nonterminal in parsed tree. """ # check start symb...	[ "def", "cyk", "(", "grammar", ",", "parse_sequence", ")", ":", "# type: (Grammar, Iterable[Any]) -> Nonterminal", "# check start symbol", "if", "grammar", ".", "start", "is", "None", ":", "raise", "StartSymbolNotSetException", "(", ")", "# create variables", "parse_sequen...	44.072464	13.521739
def p_file_depends(self, f_term, predicate): """Sets file dependencies.""" for _, _, other_file in self.graph.triples((f_term, predicate, None)): name = self.get_file_name(other_file) if name is not None: self.builder.add_file_dep(six.text_type(name)) ...	[ "def", "p_file_depends", "(", "self", ",", "f_term", ",", "predicate", ")", ":", "for", "_", ",", "_", ",", "other_file", "in", "self", ".", "graph", ".", "triples", "(", "(", "f_term", ",", "predicate", ",", "None", ")", ")", ":", "name", "=", "se...	44.5	13.2

def _agate_to_schema(self, agate_table, column_override): """Convert agate.Table with column names to a list of bigquery schemas. """ bq_schema = [] for idx, col_name in enumerate(agate_table.column_names): inferred_type = self.convert_agate_type(agate_table, idx) ...

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45.363636

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def _find_model(self, constructor, table_name, constraints=None, *, columns=None, order_by=None): """Calls DataAccess.find and passes the results to the given constructor.""" data = self.find(table_name, constraints, columns=columns, order_by=order_by) return constructor(data) if data else None

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def listDF(option='mostactive', token='', version=''): '''Returns an array of quotes for the top 10 symbols in a specified list. https://iexcloud.io/docs/api/#list Updated intraday Args: option (string); Option to query token (string); Access token version (string); API versio...

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def get_weighted_random_index(self,weights): """Return an index of an array based on the weights if a random number between 0 and 1 is less than an index return the lowest index :param weights: a list of floats for how to weight each index [w1, w2, ... wN] :type weights: list :return: index ...

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def _set_compact_flash(self, v, load=False): """ Setter method for compact_flash, mapped from YANG variable /system_monitor/compact_flash (container) If this variable is read-only (config: false) in the source YANG file, then _set_compact_flash is considered as a private method. Backends looking to ...

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def __ensure_provisioning_alarm(table_name, key_name): """ Ensure that provisioning alarm threshold is not exceeded :type table_name: str :param table_name: Name of the DynamoDB table :type key_name: str :param key_name: Configuration option key name """ lookback_window_start = get_table_op...

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def redo(self): """ Redo the latest undone command. """ self.undo_manager.redo() self.notify_observers() logging.debug('undo_manager redo stack={}'.format(self.undo_manager._redo_stack))

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def result(retn): ''' Return a value or raise an exception from a retn tuple. ''' ok, valu = retn if ok: return valu name, info = valu ctor = getattr(s_exc, name, None) if ctor is not None: raise ctor(**info) info['errx'] = name raise s_exc.SynErr(**info)

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def random_choices(self, elements=('a', 'b', 'c'), length=None): """ Returns a list of random, non-unique elements from a passed object. If `elements` is a dictionary, the value will be used as a weighting element. For example:: random_element({"{{variable_1}}": 0.5, "{{var...

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def start_coordsys(self): """ Coordinate system at start of effect. All axes are parallel to the original vector evaluation location, with the origin moved to this effect's start point. :return: coordinate system at start of effect :rtype: :class:`CoordSys` """ ...

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def list_objects(self, path='', relative=False, first_level=False, max_request_entries=None): """ List objects. Args: path (str): Path or URL. relative (bool): Path is relative to current root. first_level (bool): It True, returns only fi...

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32.328571

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def upgrade_plan(self, subid, vpsplanid, params=None): ''' /v1/server/upgrade_plan POST - account Upgrade the plan of a virtual machine. The virtual machine will be rebooted upon a successful upgrade. Link: https://www.vultr.com/api/#server_upgrade_plan ''' param...

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def extract(self, text: str = None, extract_first_date_only: bool = False, additional_formats: List[str] = list(), use_default_formats: bool = False, ignore_dates_before: datetime.datetime = None, ignore_dates_after: datetime.datetime = Non...

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54.137931

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def begin_transaction( self, database, options_=None, retry=google.api_core.gapic_v1.method.DEFAULT, timeout=google.api_core.gapic_v1.method.DEFAULT, metadata=None, ): """ Starts a new transaction. Example: >>> from google.cloud im...

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41.571429

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def set_affinity_matrix(self, affinity_mat): """ Parameters ---------- affinity_mat : sparse matrix (N_obs, N_obs). The adjacency matrix to input. """ affinity_mat = check_array(affinity_mat, accept_sparse=sparse_formats) if affinity_mat.shape[0] != af...

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39.636364

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def inverse_distance_to_grid(xp, yp, variable, grid_x, grid_y, r, gamma=None, kappa=None, min_neighbors=3, kind='cressman'): r"""Generate an inverse distance interpolation of the given points to a regular grid. Values are assigned to the given grid using inverse distance weighting ...

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def is_existing_object(did): """Return True if PID is for an object for which science bytes are stored locally. This excludes SIDs and PIDs for unprocessed replica requests, remote or non-existing revisions of local replicas and objects aggregated in Resource Maps. """ return d1_gmn.app.models.Sci...

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45.125

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def isoformat(self): """Return the date formatted according to ISO. This is 'YYYY-MM-DD'. References: - http://www.w3.org/TR/NOTE-datetime - http://www.cl.cam.ac.uk/~mgk25/iso-time.html """ # return "%04d-%02d-%02d" % (self._year, self._month, self._day) ...

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def execute_sql_statement(sql_statement, query, user_name, session, cursor): """Executes a single SQL statement""" database = query.database db_engine_spec = database.db_engine_spec parsed_query = ParsedQuery(sql_statement) sql = parsed_query.stripped() SQL_MAX_ROWS = app.config.get('SQL_MAX_ROW...

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def get_git_version(git_path=None): """ Get the Git version. """ if git_path is None: git_path = GIT_PATH git_version = check_output([git_path, "--version"]).split()[2] return git_version

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def new_stat(self): """Look at the key and value that the user has entered into the stat configurator, and set them on the currently selected entity. """ key = self.ids.newstatkey.text value = self.ids.newstatval.text if not (key and value): # TODO im...

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def find_mounts(self): """Finds all mountpoints that are mounted to a directory matching :attr:`re_pattern` or originate from a directory matching :attr:`orig_re_pattern`. """ for mountpoint, (orig, fs, opts) in self.mountpoints.items(): if 'bind' not in opts and (re.match(s...

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def setup_logging(format="%(asctime)s - %(levelname)s - %(message)s", level='INFO'): """Setup the logging framework with a basic configuration""" try: import coloredlogs coloredlogs.install(fmt=format, level=level) except ImportError: logging.basicConfig(format=format, level=level)

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def load(self, filename): """ Load AEAD from a file. @param filename: File to read AEAD from @type filename: string """ aead_f = open(filename, "rb") buf = aead_f.read(1024) if buf.startswith(YHSM_AEAD_CRLF_File_Marker): buf = YHSM_AEAD_File_M...

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def auth_password(self, username, password, event=None, fallback=True): """ Authenticate to the server using a password. The username and password are sent over an encrypted link. If an ``event`` is passed in, this method will return immediately, and the event will be triggered...

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def cleanup(self, sched, coro): """Remove this coro from the waiting for signal queue.""" try: sched.sigwait[self.name].remove((self, coro)) except ValueError: pass return True

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33.142857

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def get_washing_regex(): """Return a washing regex list.""" global _washing_regex if len(_washing_regex): return _washing_regex washing_regex = [ # Replace non and anti with non- and anti-. This allows a better # detection of keywords such as nonabelian. (re.compile(r"(\...

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def _view(self, ddoc, view, use_devmode=False, params=None, unrecognized_ok=False, passthrough=False): """Internal method to Execute a view (MapReduce) query :param string ddoc: Name of the design document :param string view: Name of the v...

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def present(name, profile="github", **kwargs): ''' Ensure a user is present .. code-block:: yaml ensure user test is present in github: github.present: - name: 'gitexample' The following parameters are required: name This is the github handle of the us...

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def random_array(shape, mean=128., std=20.): """Creates a uniformly distributed random array with the given `mean` and `std`. Args: shape: The desired shape mean: The desired mean (Default value = 128) std: The desired std (Default value = 20) Returns: Random numpy array of given `...

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def longest_common_substring(s1, s2): """ References: # https://en.wikibooks.org/wiki/Algorithm_Implementation/Strings/Longest_common_substring#Python2 """ m = [[0] * (1 + len(s2)) for i in range(1 + len(s1))] longest, x_longest = 0, 0 for x in range(1, 1 + len(s1)): for y in ran...

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def rename(self, old_label_name, new_label_name): """ Take into account that a label has been renamed """ assert(old_label_name != new_label_name) self._bayes.pop(old_label_name) old_baye_dir = self._get_baye_dir(old_label_name) new_baye_dir = self._get_baye_dir(n...

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def _get_core_transform(self, resolution): """The projection for the stereonet as a matplotlib transform. This is primarily called by LambertAxes._set_lim_and_transforms.""" return self._base_transform(self._center_longitude, self._center_latitude, ...

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def compute_dominance_frontier(graph, domtree): """ Compute a dominance frontier based on the given post-dominator tree. This implementation is based on figure 2 of paper An Efficient Method of Computing Static Single Assignment Form by Ron Cytron, etc. :param graph: The graph where we want to c...

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def add_seqs_to_alignment(seqs, aln, params=None): """Returns an Alignment object from seqs and existing Alignment. seqs: a cogent.core.alignment.SequenceCollection object, or data that can be used to build one. aln: a cogent.core.alignment.Alignment object, or data that can be used to build one ...

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def once(self): """ Returns a function that will be executed at most one time, no matter how often you call it. Useful for lazy initialization. """ ns = self.Namespace() ns.memo = None ns.run = False def work_once(*args, **kwargs): if ns.run i...

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def delete_external_nodes(sender, **kwargs): """ sync by deleting nodes from external layers when needed """ node = kwargs['instance'] if node.layer.is_external is False or not hasattr(node.layer, 'external') or node.layer.external.synchronizer_path is None: return False if hasattr(node, 'exte...

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def ensure_self(func): """ Decorator that can be used to ensure 'self' is the first argument on a task method. This only needs to be used with task methods that are used as a callback to a chord or in link_error and is really just a hack to get around https://github.com/celery/celery/issues/2137 U...

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def _zfs_image_create(vm_name, pool, disk_name, hostname_property_name, sparse_volume, disk_size, disk_image_name): ''' Clones an existing image, or creates a new one. When cl...

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def canonical_name(sgf_name): """Keep filename and some date folders""" sgf_name = os.path.normpath(sgf_name) assert sgf_name.endswith('.sgf'), sgf_name # Strip off '.sgf' sgf_name = sgf_name[:-4] # Often eval is inside a folder with the run name. # include from folder before /eval/ if part...

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def get_history(self): """Returns the history from cache or DB or a newly created one.""" if hasattr(self, '_history'): return self._history try: self._history = APICallDayHistory.objects.get( user=self.user, creation_date=now().date()) except APIC...

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def entries_view(self, request, form_id): """ Displays the form entries in a HTML table with option to export as CSV file. """ if request.POST.get("back"): change_url = admin_url(Form, "change", form_id) return HttpResponseRedirect(change_url) form...

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def _create_regex_pattern_add_optional_spaces_to_word_characters(word): r"""Add the regex special characters (\s*) to allow optional spaces. :param word: (string) the word to be inserted into a regex pattern. :return: (string) the regex pattern for that word with optional spaces betwe...

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def genes_to_json(store, query): """Fetch matching genes and convert to JSON.""" gene_query = store.hgnc_genes(query, search=True) json_terms = [{'name': "{} | {} ({})".format(gene['hgnc_id'], gene['hgnc_symbol'], ', '.join(gene['aliases'])), ...

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def check(self, orb): """Method that check whether or not the listener is triggered Args: orb (Orbit): Return: bool: True if there is a zero-crossing for the parameter watched by the listener """ return self.prev is not None and np.sign(self(orb)) != np...

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def _init_hdrgo_sortby(self, hdrgo_sortby, sortby): """Initialize header sort function.""" if hdrgo_sortby is not None: return hdrgo_sortby if sortby is not None: return sortby return self.sortby

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def _connect(cls): """ Connect signal to current model """ post_save.connect( notify_items, sender=cls, dispatch_uid='knocker_{0}'.format(cls.__name__) )

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def _remove_bound_conditions(agent, keep_criterion): """Removes bound conditions of agent such that keep_criterion is False. Parameters ---------- agent: Agent The agent whose bound conditions we evaluate keep_criterion: function Evaluates removal_criterion(a) for each agent a in a ...

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def get_by(self, field, value): """ Gets the list of firmware baseline resources managed by the appliance. Optional parameters can be used to filter the list of resources returned. The search is case-insensitive. Args: field: Field name to filter. value:...

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def exists(self, index, doc_type, id, **query_params): """ Return if a document exists """ path = make_path(index, doc_type, id) return self._send_request('HEAD', path, params=query_params)

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def from_molecule(cls, mol, theory, charge=None, spin_multiplicity=None, basis_set="6-31g", basis_set_option="cartesian", title=None, operation="optimize", theory_directives=None, alternate_directives=None): """ Very flexible arguments to...

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def get_registry(self, registry): '''**Description** Find the registry and return its json description **Arguments** - registry: Full hostname/port of registry. Eg. myrepo.example.com:5000 **Success Return Value** A JSON object representing the registry. ...

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def get_graph_by_name_version(self, name: str, version: str) -> Optional[BELGraph]: """Load the BEL graph with the given name, or allows for specification of version.""" network = self.get_network_by_name_version(name, version) if network is None: return return network.as_b...

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def store(self, name, data, version, size=0, compressed=False, digest=None, logical_size=None): """Adds a new file to the storage. If the file with the same name existed before, it's not guaranteed that the link for the old version will exist until the operation co...

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def secretly(reactor, action, system=None, username=None, prompt="Password:"): """ Call the given C{action} with a secret value. @return: a L{Deferred} that fires with C{action}'s result, or L{NoSecretError} if no secret can be retrieved. """ if system is None: system =...

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def OrEvent(*events): ''' Parameters ---------- events : list(threading.Event) List of events. Returns ------- threading.Event Event that is set when **at least one** of the events in :data:`events` is set. ''' or_event = threading.Event() def changed():...

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def get_workspaces(self): """ Get a list of workspaces. Returns JSON-like data, not a Con instance. You might want to try the :meth:`Con.workspaces` instead if the info contained here is too little. :rtype: List of :class:`WorkspaceReply`. """ data = self.messa...

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def _delete_forever_values(self, forever_key): """ Delete all of the keys that have been stored forever. :type forever_key: str """ forever = self._store.connection().lrange(forever_key, 0, -1) if len(forever) > 0: self._store.connection().delete(*forever)

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def _maybe_restore_empty_groups(self, combined): """Our index contained empty groups (e.g., from a resampling). If we reduced on that dimension, we want to restore the full index. """ if (self._full_index is not None and self._group.name in combined.dims): ind...

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def _reset_on_error(self, server, func, *args, **kwargs): """Execute an operation. Reset the server on network error. Returns fn()'s return value on success. On error, clears the server's pool and marks the server Unknown. Re-raises any exception thrown by fn(). """ try...

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def display_config(self): """Set up status display if option selected. NB: this method assumes that the first entry is the iteration count and the last is the rho value. """ if self.opt['Verbose']: hdrtxt = type(self).hdrtxt() # Call utility function to c...

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def visit_list(self, node, *args, **kwargs): """As transformers may return lists in some places this method can be used to enforce a list as return value. """ rv = self.visit(node, *args, **kwargs) if not isinstance(rv, list): rv = [rv] return rv

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def boolean(value): ''' Convert the content of a string (or a number) to a boolean. Do nothing when input value is already a boolean. This filter accepts usual values for ``True`` and ``False``: "0", "f", "false", "n", etc. ''' if value is None or isinstance(value, bool): return val...

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def exponentiate_commuting_pauli_sum(pauli_sum): """ Returns a function that maps all substituent PauliTerms and sums them into a program. NOTE: Use this function with care. Substituent PauliTerms should commute. :param PauliSum pauli_sum: PauliSum to exponentiate. :returns: A function that paramet...

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def _read_subtitles(self, lines): """ Read text fragments from a subtitles format text file. :param list lines: the lines of the subtitles text file :raises: ValueError: if the id regex is not valid """ self.log(u"Parsing fragments from subtitles text format") id...

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def output_reduce(input_file, path=True, pdb_name=None, force=False): """Runs Reduce on a pdb or mmol file and creates a new file with the output. Parameters ---------- input_file : str or pathlib.Path Path to file to run Reduce on. path : bool True if input_file is a path. pdb_n...

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def get_unresolved_properties_by_inheritance(self, timeperiod): """ Fill full properties with template if needed for the unresolved values (example: sunday ETCETC) :return: None """ # Ok, I do not have prop, Maybe my templates do? # Same story for plus for...

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def _set_auto_fields(self, model_obj): """Set the values of the auto field using counter""" for field_name, field_obj in \ self.entity_cls.meta_.auto_fields: counter_key = f'{self.schema_name}_{field_name}' if not (field_name in model_obj and model_obj[field_name]...

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def remove_existing_pidfile(pidfile_path): """ Remove the named PID file if it exists. Removing a PID file that doesn't already exist puts us in the desired state, so we ignore the condition if the file does not exist. """ try: os.remove(pidfile_path) except OSError...

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def open_as_needed(filename): """Return a file-object given either a filename or an object. Handles opening with the right class based on the file extension. """ if hasattr(filename, 'read'): return filename if filename.endswith('.bz2'): return bz2.BZ2File(filename, 'rb') elif...

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def format_labels(labels): """ Convert a dictionary of labels into a comma separated string """ if labels: return ','.join(['{}={}'.format(k, v) for k, v in labels.items()]) else: return ''

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def keep_alive(self, val: bool) -> None: """Set keep-alive connection mode. :param bool val: new state. """ self._keepalive = val if self._keepalive_handle: self._keepalive_handle.cancel() self._keepalive_handle = None

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def pypirc_temp(index_url): """ Create a temporary pypirc file for interaction with twine """ pypirc_file = tempfile.NamedTemporaryFile(suffix='.pypirc', delete=False) print(pypirc_file.name) with open(pypirc_file.name, 'w') as fh: fh.write(PYPIRC_TEMPLATE.format(index_name=PYPIRC_TEMP_INDEX_NAM...

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def _log_graphql_error(self, query, data): '''Log a ``{"errors": [...]}`` GraphQL return and return itself. :param query: the GraphQL query that triggered the result. :type query: str :param data: the decoded JSON object. :type data: dict :return: the input ``data`` ...

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def plot(self, df_data, center=False, save=False, save_name=None, save_path='saved', dated=True, notebook=True): "df_data format is a dataframe with columns x, y, z (required), and style, filter (optional)" data = df_data.to_json(orient='records') options = self.to_dict() re...

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def get_activity_query_session(self): """Gets the ``OsidSession`` associated with the activity query service. return: (osid.learning.ActivityQuerySession) - a ``ActivityQuerySession`` raise: OperationFailed - unable to complete request raise: Unimplemented - ``supports...

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def format_units(self, value, unit="B", optimal=5, auto=True, si=False): """ Takes a value and formats it for user output, we can choose the unit to use eg B, MiB, kbits/second. This is mainly for use with bytes/bits it converts the value into a human readable form. It has various ...

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def _transform_col(self, x, i): """Encode one categorical column into average target values. Args: x (pandas.Series): a categorical column to encode i (int): column index Returns: x (pandas.Series): a column with labels. """ return x.fillna(NAN...

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def reset(self): ''' Reset the state of the market (attributes in sow_vars, etc) to some user-defined initial state, and erase the histories of tracked variables. Parameters ---------- none Returns ------- none ''' for var_name in...

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def ParseStatusRow(self, parser_mediator, query, row, **unused_kwargs): """Parses a contact row from the database. Args: parser_mediator (ParserMediator): mediates interactions between parsers and other components, such as storage and dfvfs. query (str): query that created the row. ...

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def register_plugin(self, name): """Load and register a plugin given its package name.""" logger.info("Registering plugin: " + name) module = importlib.import_module(name) module.register_plugin(self)

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def extract(data, items, out_dir=None): """Extract germline calls for the given sample, if tumor only. """ if vcfutils.get_paired_phenotype(data): if len(items) == 1: germline_vcf = _remove_prioritization(data["vrn_file"], data, out_dir) germline_vcf = vcfutils.bgzip_and_inde...

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def list_configured_members(lbn, profile='default'): ''' Return a list of member workers from the configuration files CLI Examples: .. code-block:: bash salt '*' modjk.list_configured_members loadbalancer1 salt '*' modjk.list_configured_members loadbalancer1 other-profile ''' ...

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def deny_assignments(self): """Instance depends on the API version: * 2018-07-01-preview: :class:`DenyAssignmentsOperations<azure.mgmt.authorization.v2018_07_01_preview.operations.DenyAssignmentsOperations>` """ api_version = self._get_api_version('deny_assignments') if api_v...

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def refresh_content(self, order=None, name=None): """ Re-download all submissions and reset the page index """ order = order or self.content.order # Preserve the query if staying on the current page if name is None: query = self.content.query else: ...

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def _get_template(self, root=None, **metadata_defaults): """ Iterate over items metadata_defaults {prop: val, ...} to populate template """ if root is None: if self._data_map is None: self._init_data_map() root = self._xml_root = self._data_map['_root'] ...

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def grammatical_join(l, initial_joins=", ", final_join=" and "): """ Display a list of items nicely, with a different string before the final item. Useful for using lists in sentences. >>> grammatical_join(['apples', 'pears', 'bananas']) 'apples, pears and bananas' >>> grammatical_join(['apple...

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def call(self, scope, args=[]): """Call mixin. Parses a copy of the mixins body in the current scope and returns it. args: scope (Scope): current scope args (list): arguments raises: SyntaxError returns: list or False """ ...

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def get_order_line_item_by_id(cls, order_line_item_id, **kwargs): """Find OrderLineItem Return single instance of OrderLineItem by its ID. This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async=True >>> thread = api.get_o...

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def conversations(self, getsrcdst=None, **kargs): """Graphes a conversations between sources and destinations and display it (using graphviz and imagemagick) getsrcdst: a function that takes an element of the list and returns the source, the destination and optionally ...

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def uavionix_adsb_out_dynamic_send(self, utcTime, gpsLat, gpsLon, gpsAlt, gpsFix, numSats, baroAltMSL, accuracyHor, accuracyVert, accuracyVel, velVert, velNS, VelEW, emergencyStatus, state, squawk, force_mavlink1=False): ''' Dynamic data used to generate ADS-B out transponder data (send ...

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def _output_digraph(self, target): """Graphviz format depmap output handler.""" color_by_type = {} def maybe_add_type(dep, dep_id): """Add a class type to a dependency id if --show-types is passed.""" return dep_id if not self.show_types else '\\n'.join((dep_id, dep.__class__.__name__)) de...

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def main(cls): """Main entry point of Laniakea. """ args = cls.parse_args() if args.focus: Focus.init() else: Focus.disable() logging.basicConfig(format='[Laniakea] %(asctime)s %(levelname)s: %(message)s', level=args.v...

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def get_style(self, name, workspace=None): ''' returns a single style object. Will return None if no style is found. Will raise an error if more than one style with the same name is found. ''' styles = self.get_styles(names=name, workspaces=workspace) retur...

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def _computeAsymptoticCovarianceMatrix(self, W, N_k, method=None): """Compute estimate of the asymptotic covariance matrix. Parameters ---------- W : np.ndarray, shape=(N, K), dtype='float' The normalized weight matrix for snapshots and states. W[n, k] is the wei...

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def _encrypt_password(self, password): """encrypt the password for given mode """ if self.encryption_mode.lower() == 'crypt': return self._crypt_password(password) elif self.encryption_mode.lower() == 'md5': return self._md5_password(password) elif self.encryption...

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46.8

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def _manage_cmd(cmd, settings=None): # type: () -> None """ Run django ./manage.py command manually. This function eliminates the need for having ``manage.py`` (reduces file clutter). """ import sys from os import environ from peltak.core import conf from peltak.core import context ...

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30.32

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def _parseline(self, line): """ All lines come to this method. :param line: a to parse :returns: the number of rows to jump and parse the next data line or return the code error -1 """ sline = line.split(SEPARATOR) segment = sline[0] handlers = { ...

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def cyk(grammar, parse_sequence): # type: (Grammar, Iterable[Any]) -> Nonterminal """ Perform CYK algorithm. :param grammar: Grammar to use in Chomsky Normal Form. :param parse_sequence: Input sequence to parse. :return: Instance of root Nonterminal in parsed tree. """ # check start symb...

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def p_file_depends(self, f_term, predicate): """Sets file dependencies.""" for _, _, other_file in self.graph.triples((f_term, predicate, None)): name = self.get_file_name(other_file) if name is not None: self.builder.add_file_dep(six.text_type(name)) ...

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44.5

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