kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def plot(self, args, *kwargs): """Plot data onto these axes Parameters ---------- args a single instance of - `~gwpy.segments.DataQualityFlag` - `~gwpy.segments.Segment` - `~gwpy.segments.SegmentList` - `~gwp...	[ "def", "plot", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "out", "=", "[", "]", "args", "=", "list", "(", "args", ")", "while", "args", ":", "try", ":", "plotter", "=", "self", ".", "_plot_method", "(", "args", "[", "0", ...	28.463415	21.219512
def ls_(path='/', profile=None, **kwargs): ''' .. versionadded:: 2014.7.0 Return all keys and dirs inside a specific path. Returns an empty dict on failure. CLI Example: .. code-block:: bash salt myminion etcd.ls /path/to/dir/ salt myminion etcd.ls /path/to/dir/ profile=my_e...	[ "def", "ls_", "(", "path", "=", "'/'", ",", "profile", "=", "None", ",", "", "", "kwargs", ")", ":", "client", "=", "__utils__", "[", "'etcd_util.get_conn'", "]", "(", "__opts__", ",", "profile", ",", "", "", "kwargs", ")", "return", "client", "....	27.277778	27.055556
def update_or_create(self, attributes, values=None, joining=None, touch=True): """ Create or update a related record matching the attributes, and fill it with values. :param attributes: The attributes :type attributes: dict :param values: The values :type values: dict ...	[ "def", "update_or_create", "(", "self", ",", "attributes", ",", "values", "=", "None", ",", "joining", "=", "None", ",", "touch", "=", "True", ")", ":", "if", "values", "is", "None", ":", "values", "=", "{", "}", "instance", "=", "self", ".", "_query...	24.88	22.4
def __gridconnections(self): """Level-2 parser for gridconnections. pattern: object 2 class gridconnections counts 97 93 99 """ try: tok = self.__consume() except DXParserNoTokens: return if tok.equals('counts'): shape = [] ...	[ "def", "__gridconnections", "(", "self", ")", ":", "try", ":", "tok", "=", "self", ".", "__consume", "(", ")", "except", "DXParserNoTokens", ":", "return", "if", "tok", ".", "equals", "(", "'counts'", ")", ":", "shape", "=", "[", "]", "try", ":", "wh...	33.076923	16.961538
def pkginfo_to_metadata(egg_info_path, pkginfo_path): """ Convert .egg-info directory with PKG-INFO to the Metadata 2.1 format """ pkg_info = read_pkg_info(pkginfo_path) pkg_info.replace_header('Metadata-Version', '2.1') requires_path = os.path.join(egg_info_path, 'requires.txt') if os.path....	[ "def", "pkginfo_to_metadata", "(", "egg_info_path", ",", "pkginfo_path", ")", ":", "pkg_info", "=", "read_pkg_info", "(", "pkginfo_path", ")", "pkg_info", ".", "replace_header", "(", "'Metadata-Version'", ",", "'2.1'", ")", "requires_path", "=", "os", ".", "path",...	39.857143	15.380952
def to_html(self): """Render a Text MessageElement as html Args: None Returns: Str the html representation of the Text MessageElement Raises: Errors are propagated """ if self.items is None: return else: ...	[ "def", "to_html", "(", "self", ")", ":", "if", "self", ".", "items", "is", "None", ":", "return", "else", ":", "html", "=", "'<ol%s>\\n'", "%", "self", ".", "html_attributes", "(", ")", "for", "item", "in", "self", ".", "items", ":", "html", "+=", ...	24.55	19.95
def assemble_phi5_works_filepaths(): """Reads PHI5 index and builds a list of absolute filepaths.""" plaintext_dir_rel = '~/cltk_data/latin/text/phi5/individual_works/' plaintext_dir = os.path.expanduser(plaintext_dir_rel) all_filepaths = [] for author_code in PHI5_WORKS_INDEX: author_data =...	[ "def", "assemble_phi5_works_filepaths", "(", ")", ":", "plaintext_dir_rel", "=", "'~/cltk_data/latin/text/phi5/individual_works/'", "plaintext_dir", "=", "os", ".", "path", ".", "expanduser", "(", "plaintext_dir_rel", ")", "all_filepaths", "=", "[", "]", "for", "author_...	46	13.916667
def real_time_statistics(self): """ Access the real_time_statistics :returns: twilio.rest.taskrouter.v1.workspace.workflow.workflow_real_time_statistics.WorkflowRealTimeStatisticsList :rtype: twilio.rest.taskrouter.v1.workspace.workflow.workflow_real_time_statistics.WorkflowRealTimeStat...	[ "def", "real_time_statistics", "(", "self", ")", ":", "if", "self", ".", "_real_time_statistics", "is", "None", ":", "self", ".", "_real_time_statistics", "=", "WorkflowRealTimeStatisticsList", "(", "self", ".", "_version", ",", "workspace_sid", "=", "self", ".", ...	46.5	23.071429
def create_silence(length): """Create a piece of silence.""" data = bytearray(length) i = 0 while i < length: data[i] = 128 i += 1 return data	[ "def", "create_silence", "(", "length", ")", ":", "data", "=", "bytearray", "(", "length", ")", "i", "=", "0", "while", "i", "<", "length", ":", "data", "[", "i", "]", "=", "128", "i", "+=", "1", "return", "data" ]	21.375	18.125
def _to_dict(self): """Return a json dictionary representing this model.""" _dict = {} if hasattr(self, 'limit') and self.limit is not None: _dict['limit'] = self.limit return _dict	[ "def", "_to_dict", "(", "self", ")", ":", "_dict", "=", "{", "}", "if", "hasattr", "(", "self", ",", "'limit'", ")", "and", "self", ".", "limit", "is", "not", "None", ":", "_dict", "[", "'limit'", "]", "=", "self", ".", "limit", "return", "_dict" ]	36.666667	14.166667
def sync_blockchain( working_dir, bt_opts, last_block, server_state, expected_snapshots={}, **virtualchain_args ): """ synchronize state with the blockchain. Return True on success Return False if we're supposed to stop indexing Abort on error """ subdomain_index = server_state['subdoma...	[ "def", "sync_blockchain", "(", "working_dir", ",", "bt_opts", ",", "last_block", ",", "server_state", ",", "expected_snapshots", "=", "{", "}", ",", "", "", "virtualchain_args", ")", ":", "subdomain_index", "=", "server_state", "[", "'subdomains'", "]", "atlas...	41.607143	28.25
def BE8(value, min_value=None, max_value=None, fuzzable=True, name=None, full_range=False): '''8-bit field, Big endian encoded''' return UInt8(value, min_value=min_value, max_value=max_value, encoder=ENC_INT_BE, fuzzable=fuzzable, name=name, full_range=full_range)	[ "def", "BE8", "(", "value", ",", "min_value", "=", "None", ",", "max_value", "=", "None", ",", "fuzzable", "=", "True", ",", "name", "=", "None", ",", "full_range", "=", "False", ")", ":", "return", "UInt8", "(", "value", ",", "min_value", "=", "min_...	90	50
def flag_message(current): """ Flag inappropriate messages .. code-block:: python # request: { 'view':'_zops_flag_message', 'message_key': key, } # response: { ' 'status': 'Created', 'code': 201, ...	[ "def", "flag_message", "(", "current", ")", ":", "current", ".", "output", "=", "{", "'status'", ":", "'Created'", ",", "'code'", ":", "201", "}", "FlaggedMessage", ".", "objects", ".", "get_or_create", "(", "user_id", "=", "current", ".", "user_id", ",", ...	23.227273	20.409091
def variance(self) -> Optional[float]: #, ddof: int = 0) -> float: """Statistical variance of all values entered into histogram. This number is precise, because we keep the necessary data separate from bin contents. Returns ------- float """ # TODO: Add...	[ "def", "variance", "(", "self", ")", "->", "Optional", "[", "float", "]", ":", "#, ddof: int = 0) -> float:", "# TODO: Add DOF", "# http://stats.stackexchange.com/questions/6534/how-do-i-calculate-a-weighted-standard-deviation-in-excel", "if", "self", ".", "_stats", ":", "if", ...	34.631579	24.526316
def save_csv(self): """ Dump all results to CSV. """ # Sort results so we can start to see patterns right in the raw CSV. self.results.sort_values(by=self.column_ids, inplace=True) # Gotcha: integers seems to be promoted to float64 because of # reindexation. See: https://pandas.p...	[ "def", "save_csv", "(", "self", ")", ":", "# Sort results so we can start to see patterns right in the raw CSV.", "self", ".", "results", ".", "sort_values", "(", "by", "=", "self", ".", "column_ids", ",", "inplace", "=", "True", ")", "# Gotcha: integers seems to be pro...	54.333333	19
def check_anchor(self, url_data): """If URL is valid, parseable and has an anchor, check it. A warning is logged and True is returned if the anchor is not found. """ log.debug(LOG_PLUGIN, "checking anchor %r in %s", url_data.anchor, self.anchors) enc = lambda anchor: urlutil.url_...	[ "def", "check_anchor", "(", "self", ",", "url_data", ")", ":", "log", ".", "debug", "(", "LOG_PLUGIN", ",", "\"checking anchor %r in %s\"", ",", "url_data", ".", "anchor", ",", "self", ".", "anchors", ")", "enc", "=", "lambda", "anchor", ":", "urlutil", "....	50.823529	21.941176
def get_value_product_unique(self, pos): """ Return all products unique relationship with POS's Storage (only salable zones) """ qs = ProductUnique.objects.filter( box__box_structure__zone__storage__in=pos.storage_stock.filter(storage_zones__salable=True), product...	[ "def", "get_value_product_unique", "(", "self", ",", "pos", ")", ":", "qs", "=", "ProductUnique", ".", "objects", ".", "filter", "(", "box__box_structure__zone__storage__in", "=", "pos", ".", "storage_stock", ".", "filter", "(", "storage_zones__salable", "=", "Tru...	39	19.666667
def update_course(self, course, enterprise_customer, enterprise_context): """ Update course metadata of the given course and return updated course. Arguments: course (dict): Course Metadata returned by course catalog API enterprise_customer (EnterpriseCustomer): enterpri...	[ "def", "update_course", "(", "self", ",", "course", ",", "enterprise_customer", ",", "enterprise_context", ")", ":", "course", "[", "'course_runs'", "]", "=", "self", ".", "update_course_runs", "(", "course_runs", "=", "course", ".", "get", "(", "'course_runs'",...	46.259259	28.481481
def H13(self): "Information measure of correlation 2." # An imaginary result has been encountered once in the Matlab # version. The reason is unclear. return np.sqrt(1 - np.exp(-2 * (self.hxy2 - self.H9())))	[ "def", "H13", "(", "self", ")", ":", "# An imaginary result has been encountered once in the Matlab", "# version. The reason is unclear.", "return", "np", ".", "sqrt", "(", "1", "-", "np", ".", "exp", "(", "-", "2", "*", "(", "self", ".", "hxy2", "-", "self", ...	47.2	17.6
def _parse_metadata(response): ''' Extracts out resource metadata information. ''' if response is None or response.headers is None: return None metadata = _dict() for key, value in response.headers.items(): if key.lower().startswith('x-ms-meta-'): metadata[key[10:]]...	[ "def", "_parse_metadata", "(", "response", ")", ":", "if", "response", "is", "None", "or", "response", ".", "headers", "is", "None", ":", "return", "None", "metadata", "=", "_dict", "(", ")", "for", "key", ",", "value", "in", "response", ".", "headers", ...	24.642857	21.214286
def _init(self): """Create and grid the widgets.""" for label in self.ticklabels: label.destroy() self.label.place_forget() self.ticks = [] self.ticklabels = [] if self._resolution > 0: nb_steps = round((self.scale.cget('to') - self.scale.cget('fro...	[ "def", "_init", "(", "self", ")", ":", "for", "label", "in", "self", ".", "ticklabels", ":", "label", ".", "destroy", "(", ")", "self", ".", "label", ".", "place_forget", "(", ")", "self", ".", "ticks", "=", "[", "]", "self", ".", "ticklabels", "="...	47.875	19.3125
def vor_to_am(vor): r""" Given a Voronoi tessellation object from Scipy's ``spatial`` module, converts to a sparse adjacency matrix network representation in COO format. Parameters ---------- vor : Voronoi Tessellation object This object is produced by ``scipy.spatial.Voronoi`` Ret...	[ "def", "vor_to_am", "(", "vor", ")", ":", "# Create adjacency matrix in lil format for quick matrix construction", "N", "=", "vor", ".", "vertices", ".", "shape", "[", "0", "]", "rc", "=", "[", "[", "]", ",", "[", "]", "]", "for", "ij", "in", "vor", ".", ...	33.285714	17.785714
def content(): """Helper method that returns just the content. This method was added so that the text could be reused in the dock_help module. .. versionadded:: 3.2.2 :returns: A message object without brand element. :rtype: safe.messaging.message.Message """ message = m.Message() ...	[ "def", "content", "(", ")", ":", "message", "=", "m", ".", "Message", "(", ")", "message", ".", "add", "(", "m", ".", "Paragraph", "(", "tr", "(", "'The InaSAFE options dialog is used to control various aspects of '", "'the InaSAFE analysis and reporting environment. He...	41.017391	22.663768
def _condition_as_sql(self, qn, connection): ''' Return sql for condition. ''' def escape(value): if isinstance(value, bool): value = str(int(value)) if isinstance(value, six.string_types): # Escape params used with LIKE ...	[ "def", "_condition_as_sql", "(", "self", ",", "qn", ",", "connection", ")", ":", "def", "escape", "(", "value", ")", ":", "if", "isinstance", "(", "value", ",", "bool", ")", ":", "value", "=", "str", "(", "int", "(", "value", ")", ")", "if", "isins...	34.409091	13.318182
def keys(self, element=None, mode=None): r""" This subclass works exactly like ``keys`` when no arguments are passed, but optionally accepts an ``element`` and/or a ``mode``, which filters the output to only the requested keys. The default behavior is exactly equivalent to the n...	[ "def", "keys", "(", "self", ",", "element", "=", "None", ",", "mode", "=", "None", ")", ":", "if", "mode", "is", "None", ":", "return", "super", "(", ")", ".", "keys", "(", ")", "element", "=", "self", ".", "_parse_element", "(", "element", "=", ...	35.057971	23.710145
def _filter_headers(self): """ Add headers designed for filtering messages based on objects. Returns: dict: Filter-related headers to be combined with the existing headers """ headers = {} for user in self.usernames: headers["fedora_messaging_user...	[ "def", "_filter_headers", "(", "self", ")", ":", "headers", "=", "{", "}", "for", "user", "in", "self", ".", "usernames", ":", "headers", "[", "\"fedora_messaging_user_{}\"", ".", "format", "(", "user", ")", "]", "=", "True", "for", "package", "in", "sel...	42	18.947368
def enable_request_loader(): """ Enable request loader Optional user loader based on incomin request object. This is useful to enable on top of default user loader if you want to authenticate API requests via bearer token header. :return: """ @login_manager.request_loader def load_us...	[ "def", "enable_request_loader", "(", ")", ":", "@", "login_manager", ".", "request_loader", "def", "load_user_from_request", "(", "request", ")", ":", "user", "=", "None", "auth", "=", "request", ".", "headers", ".", "get", "(", "'Authorization'", ")", "if", ...	37.269231	16.038462
def evaluate(obj, array): """Evaluate a ROOT histogram, function, graph, or spline over an array. Parameters ---------- obj : TH[1\|2\|3], TF[1\|2\|3], TFormula, TGraph, TSpline, or string A ROOT histogram, function, formula, graph, spline, or string. If a string is specified, a TFormula is...	[ "def", "evaluate", "(", "obj", ",", "array", ")", ":", "import", "ROOT", "array", "=", "np", ".", "asarray", "(", "array", ",", "dtype", "=", "np", ".", "double", ")", "if", "isinstance", "(", "obj", ",", "ROOT", ".", "TH1", ")", ":", "if", "isin...	39.03876	14.217054
def rest_get(self, url, params=None, headers=None, auth=None, verify=True, cert=None): """ Perform a GET request to url with optional authentication """ res = requests.get(url, params=params, headers=headers, auth=auth, verify=verify, cert=cert) return ...	[ "def", "rest_get", "(", "self", ",", "url", ",", "params", "=", "None", ",", "headers", "=", "None", ",", "auth", "=", "None", ",", "verify", "=", "True", ",", "cert", "=", "None", ")", ":", "res", "=", "requests", ".", "get", "(", "url", ",", ...	48.428571	17.571429
def list_cache_nodes_full(opts=None, provider=None, base=None): ''' Return a list of minion data from the cloud cache, rather from the cloud providers themselves. This is the cloud cache version of list_nodes_full(). ''' if opts is None: opts = __opts__ if opts.get('update_cachedir', Fal...	[ "def", "list_cache_nodes_full", "(", "opts", "=", "None", ",", "provider", "=", "None", ",", "base", "=", "None", ")", ":", "if", "opts", "is", "None", ":", "opts", "=", "__opts__", "if", "opts", ".", "get", "(", "'update_cachedir'", ",", "False", ")",...	41.194444	20.638889
def render_template(self, template_parameters, template_id): """RenderTemplate. [Preview API] :param :class:`<TemplateParameters> <azure.devops.v5_1.cix.models.TemplateParameters>` template_parameters: :param str template_id: :rtype: :class:`<Template> <azure.devops.v5_1.cix.mode...	[ "def", "render_template", "(", "self", ",", "template_parameters", ",", "template_id", ")", ":", "route_values", "=", "{", "}", "if", "template_id", "is", "not", "None", ":", "route_values", "[", "'templateId'", "]", "=", "self", ".", "_serialize", ".", "url...	53.823529	22
def _cartesian(arraySizes, out=None): """ NAME: cartesian PURPOSE: Generate a cartesian product of input arrays. INPUT: arraySizes - list of size of arrays out - Array to place the cartesian product in. OUTPUT: 2-D array of shape (product(arraySizes), len(ar...	[ "def", "_cartesian", "(", "arraySizes", ",", "out", "=", "None", ")", ":", "arrays", "=", "[", "]", "for", "i", "in", "range", "(", "len", "(", "arraySizes", ")", ")", ":", "arrays", ".", "append", "(", "nu", ".", "arange", "(", "0", ",", "arrayS...	31.617647	18.5
def run(locations, random, bikes, crime, nearby, json, update_bikes, api_server, cross_origin, host, port, db_path, verbose): """ Runs the program. Takes a list of postcodes or coordinates and returns various information about them. If using the cli, make sure to update the bikes database with t...	[ "def", "run", "(", "locations", ",", "random", ",", "bikes", ",", "crime", ",", "nearby", ",", "json", ",", "update_bikes", ",", "api_server", ",", "cross_origin", ",", "host", ",", "port", ",", "db_path", ",", "verbose", ")", ":", "log_levels", "=", "...	39.925926	24.074074
def _toState(self, state, args, *kwargs): """ Transition to the next state. @param state: Name of the next state. """ try: method = getattr(self, '_state_%s' % state) except AttributeError: raise ValueError("No such state %r" % state) l...	[ "def", "_toState", "(", "self", ",", "state", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "try", ":", "method", "=", "getattr", "(", "self", ",", "'_state_%s'", "%", "state", ")", "except", "AttributeError", ":", "raise", "ValueError", "(", ...	30.5	15.071429
def pre_save(sender, instance, raw, using, update_fields, **kwargs): """https://docs.djangoproject.com/es/1.10/ref/signals/#post-save""" if raw: # Return if loading Fixtures return try: with transaction.atomic(): if not should_audit(instance): return Fals...	[ "def", "pre_save", "(", "sender", ",", "instance", ",", "raw", ",", "using", ",", "update_fields", ",", "", "", "kwargs", ")", ":", "if", "raw", ":", "# Return if loading Fixtures", "return", "try", ":", "with", "transaction", ".", "atomic", "(", ")", ...	42.176471	20.455882
def _fetchSequence(ac, startIndex=None, endIndex=None): """Fetch sequences from NCBI using the eself interface. An interbase interval may be optionally provided with startIndex and endIndex. NCBI eself will return just the requested subsequence, which might greatly reduce payload sizes (especially with...	[ "def", "_fetchSequence", "(", "ac", ",", "startIndex", "=", "None", ",", "endIndex", "=", "None", ")", ":", "urlFmt", "=", "(", "\"http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?\"", "\"db=nucleotide&id={ac}&rettype=fasta&retmode=text\"", ")", "if", "startIndex", ...	36.162162	21.675676
def drop_schema(self, schema, cascade=False): """Drop specified schema """ if schema in self.schemas: sql = "DROP SCHEMA " + schema if cascade: sql = sql + " CASCADE" self.execute(sql)	[ "def", "drop_schema", "(", "self", ",", "schema", ",", "cascade", "=", "False", ")", ":", "if", "schema", "in", "self", ".", "schemas", ":", "sql", "=", "\"DROP SCHEMA \"", "+", "schema", "if", "cascade", ":", "sql", "=", "sql", "+", "\" CASCADE\"", "s...	31.625	5.25
def change_sample(self, old_samp_name, new_samp_name, new_site_name=None, new_er_data=None, new_pmag_data=None, replace_data=False): """ Find actual data objects for sample and site. Then call Sample class change method to update sample name and data.. """ s...	[ "def", "change_sample", "(", "self", ",", "old_samp_name", ",", "new_samp_name", ",", "new_site_name", "=", "None", ",", "new_er_data", "=", "None", ",", "new_pmag_data", "=", "None", ",", "replace_data", "=", "False", ")", ":", "sample", "=", "self", ".", ...	50.75	21.6
def get(self, index: pd.Index, query: str='', omit_missing_columns: bool=False) -> pd.DataFrame: """For the rows in ``index`` get the columns from the simulation's population which this view is configured. The result may be further filtered by the view's query. Parameters ---------- ...	[ "def", "get", "(", "self", ",", "index", ":", "pd", ".", "Index", ",", "query", ":", "str", "=", "''", ",", "omit_missing_columns", ":", "bool", "=", "False", ")", "->", "pd", ".", "DataFrame", ":", "pop", "=", "self", ".", "manager", ".", "get_pop...	40.35	26.175
def main(): """Simple test.""" from spyder.utils.qthelpers import qapplication app = qapplication() widget = NotebookClient(plugin=None, name='') widget.show() widget.set_url('http://google.com') sys.exit(app.exec_())	[ "def", "main", "(", ")", ":", "from", "spyder", ".", "utils", ".", "qthelpers", "import", "qapplication", "app", "=", "qapplication", "(", ")", "widget", "=", "NotebookClient", "(", "plugin", "=", "None", ",", "name", "=", "''", ")", "widget", ".", "sh...	29.75	13
def dim_lower_extent(self, args, *kwargs): """ Returns the lower extent of the dimensions in args. .. code-block:: python t_ex, bl_ex, ch_ex = cube.dim_lower_extent('ntime', 'nbl', 'nchan') or .. code-block:: python t_ex, bl_ex, ch_ex, src_ex = cube...	[ "def", "dim_lower_extent", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "# The lower extent of any integral dimension is 0 by default", "args", "=", "tuple", "(", "0", "if", "isinstance", "(", "a", ",", "(", "int", ",", "np", ".", "integ...	30.842105	25.157895
def data_to_bytes(data, encoding): """\ Converts the provided data into bytes. If the data is already a byte sequence, it will be left unchanged. This function tries to use the provided `encoding` (if not ``None``) or the default encoding (ISO/IEC 8859-1). It uses UTF-8 as fallback. Returns th...	[ "def", "data_to_bytes", "(", "data", ",", "encoding", ")", ":", "if", "isinstance", "(", "data", ",", "bytes", ")", ":", "return", "data", ",", "len", "(", "data", ")", ",", "encoding", "or", "consts", ".", "DEFAULT_BYTE_ENCODING", "data", "=", "str", ...	35.972222	15.5
def ajax_recalculate_records(self): """Recalculate all AR records and dependencies - samples - templates - profiles - services - dependecies XXX: This function has grown too much and needs refactoring! """ out = {} # ...	[ "def", "ajax_recalculate_records", "(", "self", ")", ":", "out", "=", "{", "}", "# The sorted records from the request", "records", "=", "self", ".", "get_records", "(", ")", "for", "n", ",", "record", "in", "enumerate", "(", "records", ")", ":", "# Mapping of...	45.155963	17.655963
def _get_stddevs(self, C, rup, shape, stddev_types): """ Return standard deviations as defined in p. 971. """ weight = self._compute_weight_std(C, rup.mag) std_intra = weight * C["sd1"] * np.ones(shape) std_inter = weight * C["sd2"] * np.ones(shape) ...	[ "def", "_get_stddevs", "(", "self", ",", "C", ",", "rup", ",", "shape", ",", "stddev_types", ")", ":", "weight", "=", "self", ".", "_compute_weight_std", "(", "C", ",", "rup", ".", "mag", ")", "std_intra", "=", "weight", "*", "C", "[", "\"sd1\"", "]"...	44	14.666667
def is_bifurcating(self, include_root=True): """ Returns False if there is a polytomy in the tree, including if the tree is unrooted (basal polytomy), unless you use the include_root=False argument. """ ctn1 = -1 + (2 * len(self)) ctn2 = -2 + (2 * len(self)) ...	[ "def", "is_bifurcating", "(", "self", ",", "include_root", "=", "True", ")", ":", "ctn1", "=", "-", "1", "+", "(", "2", "", "len", "(", "self", ")", ")", "ctn2", "=", "-", "2", "+", "(", "2", "", "len", "(", "self", ")", ")", "if", "self", ...	44.538462	18.384615
def OnPreferences(self, event): """Preferences event handler that launches preferences dialog""" preferences = self.interfaces.get_preferences_from_user() if preferences: for key in preferences: if type(config[key]) in (type(u""), type("")): conf...	[ "def", "OnPreferences", "(", "self", ",", "event", ")", ":", "preferences", "=", "self", ".", "interfaces", ".", "get_preferences_from_user", "(", ")", "if", "preferences", ":", "for", "key", "in", "preferences", ":", "if", "type", "(", "config", "[", "key...	38.071429	20.071429
def client_sends_binary(self, message, name=None, label=None): """Send raw binary `message`. If client `name` is not given, uses the latest client. Optional message `label` is shown on logs. Examples: \| Client sends binary \| Hello! \| \| Client sends binary \| ${some binar...	[ "def", "client_sends_binary", "(", "self", ",", "message", ",", "name", "=", "None", ",", "label", "=", "None", ")", ":", "client", ",", "name", "=", "self", ".", "_clients", ".", "get_with_name", "(", "name", ")", "client", ".", "send", "(", "message"...	37.692308	18.923077
def generate_orbital_path(self, factor=3., n_points=20, viewup=None, z_shift=None): """Genrates an orbital path around the data scene Parameters ---------- facotr : float A scaling factor when biulding the orbital extent n_points : int number of points o...	[ "def", "generate_orbital_path", "(", "self", ",", "factor", "=", "3.", ",", "n_points", "=", "20", ",", "viewup", "=", "None", ",", "z_shift", "=", "None", ")", ":", "if", "viewup", "is", "None", ":", "viewup", "=", "rcParams", "[", "'camera'", "]", ...	34.448276	18.103448
def list(self, teamId=None, type=None, sortBy=None, max=None, **request_parameters): """List rooms. By default, lists rooms to which the authenticated user belongs. This method supports Webex Teams's implementation of RFC5988 Web Linking to provide pagination support. It ...	[ "def", "list", "(", "self", ",", "teamId", "=", "None", ",", "type", "=", "None", ",", "sortBy", "=", "None", ",", "max", "=", "None", ",", "", "", "request_parameters", ")", ":", "check_type", "(", "teamId", ",", "basestring", ")", "check_type", "...	41.844828	24.517241
def _complete_original_tasks( self, setName): """mark original tasks as completed if they are marked as complete in the index taskpaper document Key Arguments: - ``setName`` -- the name of the sync tag set """ self.log.info('starting the ``_comp...	[ "def", "_complete_original_tasks", "(", "self", ",", "setName", ")", ":", "self", ".", "log", ".", "info", "(", "'starting the ``_complete_original_tasks`` method'", ")", "if", "self", ".", "editorialRootPath", ":", "taskpaperDocPath", "=", "self", ".", "syncFolder"...	36.169492	19.440678
def appliance_device_read_community(self): """ Gets the ApplianceDeviceReadCommunity API client. Returns: ApplianceDeviceReadCommunity: """ if not self.__appliance_device_read_community: self.__appliance_device_read_community = ApplianceDeviceReadCommunit...	[ "def", "appliance_device_read_community", "(", "self", ")", ":", "if", "not", "self", ".", "__appliance_device_read_community", ":", "self", ".", "__appliance_device_read_community", "=", "ApplianceDeviceReadCommunity", "(", "self", ".", "__connection", ")", "return", "...	38.5	17.1
def _update_param(self): r"""Update parameters This method updates the values of the algorthm parameters with the methods provided """ # Update relaxation parameter. if not isinstance(self._rho_update, type(None)): self._rho = self._rho_update(self._rho) ...	[ "def", "_update_param", "(", "self", ")", ":", "# Update relaxation parameter.", "if", "not", "isinstance", "(", "self", ".", "_rho_update", ",", "type", "(", "None", ")", ")", ":", "self", ".", "_rho", "=", "self", ".", "_rho_update", "(", "self", ".", ...	32.263158	19
def frames(self, key=None, orig_order=False): """Returns a list of frames in this tag. If KEY is None, returns all frames in the tag; otherwise returns all frames whose frameid matches KEY. If ORIG_ORDER is True, then the frames are returned in their original order. Othe...	[ "def", "frames", "(", "self", ",", "key", "=", "None", ",", "orig_order", "=", "False", ")", ":", "if", "key", "is", "not", "None", ":", "# If there are multiple frames, then they are already in original order.", "key", "=", "self", ".", "_normalize_key", "(", "...	39.37931	15.551724
def _setup(self): """ Run setup tasks after initialization """ self._populate_local() try: self._populate_latest() except Exception as e: self.log.exception('Unable to retrieve latest %s version information', self.meta_name) self._sort()	[ "def", "_setup", "(", "self", ")", ":", "self", ".", "_populate_local", "(", ")", "try", ":", "self", ".", "_populate_latest", "(", ")", "except", "Exception", "as", "e", ":", "self", ".", "log", ".", "exception", "(", "'Unable to retrieve latest %s version ...	30.8	15.8
def gist_diff(): """Diff this file with the gist on github""" remote_file = wget(RAW_GIST) proc = subprocess.Popen(('diff - %s'%MY_PATH).split(), stdin=subprocess.PIPE, stdout=subprocess.PIPE) stdout, stderr = proc.communicate(remote_file) retu...	[ "def", "gist_diff", "(", ")", ":", "remote_file", "=", "wget", "(", "RAW_GIST", ")", "proc", "=", "subprocess", ".", "Popen", "(", "(", "'diff - %s'", "%", "MY_PATH", ")", ".", "split", "(", ")", ",", "stdin", "=", "subprocess", ".", "PIPE", ",", "st...	40.25	13
def verb_chain_ends(self): """The end positions of ``verb_chains`` elements.""" if not self.is_tagged(VERB_CHAINS): self.tag_verb_chains() return self.ends(VERB_CHAINS)	[ "def", "verb_chain_ends", "(", "self", ")", ":", "if", "not", "self", ".", "is_tagged", "(", "VERB_CHAINS", ")", ":", "self", ".", "tag_verb_chains", "(", ")", "return", "self", ".", "ends", "(", "VERB_CHAINS", ")" ]	40	5.2
def reducer_count(self, key, values): """ count occurences for each (metro, POI) record """ total = sum(values) metro, poi = key # group data by metro areas for final output yield metro, (total, poi)	[ "def", "reducer_count", "(", "self", ",", "key", ",", "values", ")", ":", "total", "=", "sum", "(", "values", ")", "metro", ",", "poi", "=", "key", "# group data by metro areas for final output ", "yield", "metro", ",", "(", "total", ",", "poi", ")" ]	39.666667	9.166667
def frequencies(self, sides=None): """Return the frequency vector according to :attr:`sides`""" # use the attribute sides except if a valid sides argument is provided if sides is None: sides = self.sides if sides not in self._sides_choices: raise errors.SpectrumC...	[ "def", "frequencies", "(", "self", ",", "sides", "=", "None", ")", ":", "# use the attribute sides except if a valid sides argument is provided", "if", "sides", "is", "None", ":", "sides", "=", "self", ".", "sides", "if", "sides", "not", "in", "self", ".", "_sid...	37.8	14.333333
def prob(self, pw): """ returns the probabiltiy of pw in the model. P[pw] = n(pw)/n(__total__) """ return float(self._T.get(pw, 0)) / self._T[TOTALF_W]	[ "def", "prob", "(", "self", ",", "pw", ")", ":", "return", "float", "(", "self", ".", "_T", ".", "get", "(", "pw", ",", "0", ")", ")", "/", "self", ".", "_T", "[", "TOTALF_W", "]" ]	31	9.666667
def from_string(date_str): """ construction from the following string patterns '%Y-%m-%d' '%d.%m.%Y' '%m/%d/%Y' '%Y%m%d' :param str date_str: :return BusinessDate: """ if date_str.count('-'): str_format = '%Y-%m-%d' eli...	[ "def", "from_string", "(", "date_str", ")", ":", "if", "date_str", ".", "count", "(", "'-'", ")", ":", "str_format", "=", "'%Y-%m-%d'", "elif", "date_str", ".", "count", "(", "'.'", ")", ":", "str_format", "=", "'%d.%m.%Y'", "elif", "date_str", ".", "cou...	30.677419	15.258065
def get_name(self): """ Return the name of the field :rtype: string """ if self.name_idx_value == None: self.name_idx_value = self.CM.get_string(self.name_idx) return self.name_idx_value	[ "def", "get_name", "(", "self", ")", ":", "if", "self", ".", "name_idx_value", "==", "None", ":", "self", ".", "name_idx_value", "=", "self", ".", "CM", ".", "get_string", "(", "self", ".", "name_idx", ")", "return", "self", ".", "name_idx_value" ]	24.7	14.9
def redirect_to(): """302/3XX Redirects to the given URL. --- tags: - Redirects produces: - text/html get: parameters: - in: query name: url type: string required: true - in: query name: status_code type: int pos...	[ "def", "redirect_to", "(", ")", ":", "args_dict", "=", "request", ".", "args", ".", "items", "(", ")", "args", "=", "CaseInsensitiveDict", "(", "args_dict", ")", "# We need to build the response manually and convert to UTF-8 to prevent", "# werkzeug from \"fixing\" the URL....	24.236111	18.916667
def hash_vector(self, v, querying=False): """ Hashes the vector and returns the binary bucket key as string. """ if scipy.sparse.issparse(v): # If vector is sparse, make sure we have the CSR representation # of the projection matrix if self.normals_csr...	[ "def", "hash_vector", "(", "self", ",", "v", ",", "querying", "=", "False", ")", ":", "if", "scipy", ".", "sparse", ".", "issparse", "(", "v", ")", ":", "# If vector is sparse, make sure we have the CSR representation", "# of the projection matrix", "if", "self", ...	43.16129	20.516129
def start(self, func=None): """Start the roaster control process. This function will kick off the processing thread for the Hottop and register any user-defined callback function. By default, it will not begin collecting any reading information or saving it. In order to do that ...	[ "def", "start", "(", "self", ",", "func", "=", "None", ")", ":", "self", ".", "_user_callback", "=", "func", "if", "not", "self", ".", "_simulate", ":", "self", ".", "_process", "=", "ControlProcess", "(", "self", ".", "_conn", ",", "self", ".", "_co...	43.904762	22.952381
def fo_pct_by_zone(self): """ Get the by team face-off win % by zone. Format is :returns: dict ``{ 'home/away': { 'off/def/neut': % } }`` """ bz = self.by_zone return { t: { z: bz[t][z]['won']/(1.0*bz[t][z]['total']) if bz[t][z]['t...	[ "def", "fo_pct_by_zone", "(", "self", ")", ":", "bz", "=", "self", ".", "by_zone", "return", "{", "t", ":", "{", "z", ":", "bz", "[", "t", "]", "[", "z", "]", "[", "'won'", "]", "/", "(", "1.0", "*", "bz", "[", "t", "]", "[", "z", "]", "[...	29.0625	18.5625
def parserunstats(self): """Parses the XML run statistics file (GenerateFASTQRunStatistics.xml). In some cases, the file is not available. Equivalent data can be pulled from Basespace.Generate a text file name indexingQC.txt containing the copied tables from the Indexing QC tab of the run on Ba...	[ "def", "parserunstats", "(", "self", ")", ":", "# metadata = GenObject()", "# If the default file GenerateFASTQRunStatistics.xml is present, parse it", "if", "os", ".", "path", ".", "isfile", "(", "os", ".", "path", ".", "join", "(", "self", ".", "path", ",", "\"Gen...	66.982143	29.142857
def notification_sm_changed(self, model, prop_name, info): """Remove references to non-existing state machines""" for state_machine_id in list(self._expansion_state.keys()): if state_machine_id not in self.model.state_machines: del self._expansion_state[state_machine_id]	[ "def", "notification_sm_changed", "(", "self", ",", "model", ",", "prop_name", ",", "info", ")", ":", "for", "state_machine_id", "in", "list", "(", "self", ".", "_expansion_state", ".", "keys", "(", ")", ")", ":", "if", "state_machine_id", "not", "in", "se...	62.2	17.8
def formatDuration(self, duration): """Format the duration. This method could be overridden if really needed, as the duration format in gerrit is an arbitrary string. :param duration: duration in timedelta """ days = duration.days hours, remainder = divmod(durati...	[ "def", "formatDuration", "(", "self", ",", "duration", ")", ":", "days", "=", "duration", ".", "days", "hours", ",", "remainder", "=", "divmod", "(", "duration", ".", "seconds", ",", "3600", ")", "minutes", ",", "seconds", "=", "divmod", "(", "remainder"...	42.3125	18.5625
def allocate(self): """Initializes libvirt resources.""" disk_path = self.provider_image self._hypervisor = libvirt.open( self.configuration.get('hypervisor', 'vbox:///session')) self._domain = domain_create(self._hypervisor, self.identifier, ...	[ "def", "allocate", "(", "self", ")", ":", "disk_path", "=", "self", ".", "provider_image", "self", ".", "_hypervisor", "=", "libvirt", ".", "open", "(", "self", ".", "configuration", ".", "get", "(", "'hypervisor'", ",", "'vbox:///session'", ")", ")", "sel...	39.777778	22
def replay_detection_negotiated(self): """ After :meth:`step` has been called, this property will be set to True if the security context can use replay detection for messages protected by :meth:`get_mic` and :meth:`wrap`. False if replay detection cannot be used. """ retu...	[ "def", "replay_detection_negotiated", "(", "self", ")", ":", "return", "(", "self", ".", "flags", "&", "C", ".", "GSS_C_REPLAY_FLAG", ")", "and", "(", "self", ".", "established", "or", "(", "self", ".", "flags", "&", "C", ".", "GSS_C_PROT_READY_FLAG", ")",...	41.454545	21.636364
def get_policy_type(self, project, type_id): """GetPolicyType. Retrieve a specific policy type by ID. :param str project: Project ID or project name :param str type_id: The policy ID. :rtype: :class:`<PolicyType> <azure.devops.v5_0.policy.models.PolicyType>` """ r...	[ "def", "get_policy_type", "(", "self", ",", "project", ",", "type_id", ")", ":", "route_values", "=", "{", "}", "if", "project", "is", "not", "None", ":", "route_values", "[", "'project'", "]", "=", "self", ".", "_serialize", ".", "url", "(", "'project'"...	49.588235	16.058824
def cancel(self, mark_completed_as_cancelled=False): """ Cancel the future. If the future has not been started yet, it will never start running. If the future is already running, it will run until the worker function exists. The worker function can check if the future has been cancelled using the :m...	[ "def", "cancel", "(", "self", ",", "mark_completed_as_cancelled", "=", "False", ")", ":", "with", "self", ".", "_lock", ":", "if", "not", "self", ".", "_completed", "or", "mark_completed_as_cancelled", ":", "self", ".", "_cancelled", "=", "True", "callbacks", ...	42.631579	24.526316
def data_x_range(self): """Return a 2-tuple giving the minimum and maximum x-axis data range. """ try: lower = min([min(self._filter_none(s)) for type, s in self.annotated_data() if type == 'x']) upper = max([max(s...	[ "def", "data_x_range", "(", "self", ")", ":", "try", ":", "lower", "=", "min", "(", "[", "min", "(", "self", ".", "_filter_none", "(", "s", ")", ")", "for", "type", ",", "s", "in", "self", ".", "annotated_data", "(", ")", "if", "type", "==", "'x'...	36.857143	12
def get_clamav_conf(filename): """Initialize clamav configuration.""" if os.path.isfile(filename): return ClamavConfig(filename) log.warn(LOG_PLUGIN, "No ClamAV config file found at %r.", filename)	[ "def", "get_clamav_conf", "(", "filename", ")", ":", "if", "os", ".", "path", ".", "isfile", "(", "filename", ")", ":", "return", "ClamavConfig", "(", "filename", ")", "log", ".", "warn", "(", "LOG_PLUGIN", ",", "\"No ClamAV config file found at %r.\"", ",", ...	42.6	10.6
def processResponse(cls, soapdata, **kw): """called by deferred, returns pyobj representing reply. Parameters and Key Words: soapdata -- SOAP Data replytype -- reply type of response """ if len(soapdata) == 0: raise TypeError('Received empty response') # ...	[ "def", "processResponse", "(", "cls", ",", "soapdata", ",", "", "", "kw", ")", ":", "if", "len", "(", "soapdata", ")", "==", "0", ":", "raise", "TypeError", "(", "'Received empty response'", ")", "# log.msg(\"_\" * 33, time.ctime(time.time()), ", "# ...	34.888889	14.722222
def groups_unarchive(self, room_id, **kwargs): """Unarchives a private group.""" return self.__call_api_post('groups.unarchive', roomId=room_id, kwargs=kwargs)	[ "def", "groups_unarchive", "(", "self", ",", "room_id", ",", "", "", "kwargs", ")", ":", "return", "self", ".", "__call_api_post", "(", "'groups.unarchive'", ",", "roomId", "=", "room_id", ",", "kwargs", "=", "kwargs", ")" ]	57.666667	17.333333
def execute(self, conn, app="", release_version="", pset_hash="", output_label="", global_tag='', transaction = False): """ returns id for a given application """ sql = self.sql binds = {} setAnd=False if not app == "": sql += " A.APP_NAME=:app_name" binds[...	[ "def", "execute", "(", "self", ",", "conn", ",", "app", "=", "\"\"", ",", "release_version", "=", "\"\"", ",", "pset_hash", "=", "\"\"", ",", "output_label", "=", "\"\"", ",", "global_tag", "=", "''", ",", "transaction", "=", "False", ")", ":", "sql", ...	36.447368	16.868421
def create_dvportgroup(portgroup_dict, portgroup_name, dvs, service_instance=None): ''' Creates a distributed virtual portgroup. Note: The ``portgroup_name`` param will override any name already set in ``portgroup_dict``. portgroup_dict Dictionary with the config val...	[ "def", "create_dvportgroup", "(", "portgroup_dict", ",", "portgroup_name", ",", "dvs", ",", "service_instance", "=", "None", ")", ":", "log", ".", "trace", "(", "'Creating portgroup\\'%s\\' in dvs \\'%s\\' '", "'with dict = %s'", ",", "portgroup_name", ",", "dvs", ","...	38.326087	22.413043
def _clean_algorithm(data): """Clean algorithm keys, handling items that can be specified as lists or single items. """ # convert single items to lists for key in ["variantcaller", "jointcaller", "svcaller"]: val = tz.get_in(["algorithm", key], data) if val: if not isinstance...	[ "def", "_clean_algorithm", "(", "data", ")", ":", "# convert single items to lists", "for", "key", "in", "[", "\"variantcaller\"", ",", "\"jointcaller\"", ",", "\"svcaller\"", "]", ":", "val", "=", "tz", ".", "get_in", "(", "[", "\"algorithm\"", ",", "key", "]...	47.75	17.875
def _set_clear_mpls_rsvp_statistics(self, v, load=False): """ Setter method for clear_mpls_rsvp_statistics, mapped from YANG variable /brocade_mpls_rpc/clear_mpls_rsvp_statistics (rpc) If this variable is read-only (config: false) in the source YANG file, then _set_clear_mpls_rsvp_statistics is consider...	[ "def", "_set_clear_mpls_rsvp_statistics", "(", "self", ",", "v", ",", "load", "=", "False", ")", ":", "if", "hasattr", "(", "v", ",", "\"_utype\"", ")", ":", "v", "=", "v", ".", "_utype", "(", "v", ")", "try", ":", "t", "=", "YANGDynClass", "(", "v...	81.954545	39
def source_model_info(nodes): """ Extract information about NRML/0.5 source models. Returns a table with TRTs as rows and source classes as columns. """ c = collections.Counter() for node in nodes: for src_group in node: trt = src_group['tectonicRegion'] for src i...	[ "def", "source_model_info", "(", "nodes", ")", ":", "c", "=", "collections", ".", "Counter", "(", ")", "for", "node", "in", "nodes", ":", "for", "src_group", "in", "node", ":", "trt", "=", "src_group", "[", "'tectonicRegion'", "]", "for", "src", "in", ...	36.44	10.84
def add_ms1_quant_from_top3_mzidtsv(proteins, psms, headerfields, protcol): """Collects PSMs with the highes precursor quant values, adds sum of the top 3 of these to a protein table""" if not protcol: protcol = mzidtsvdata.HEADER_MASTER_PROT top_ms1_psms = generate_top_psms(psms, protcol) f...	[ "def", "add_ms1_quant_from_top3_mzidtsv", "(", "proteins", ",", "psms", ",", "headerfields", ",", "protcol", ")", ":", "if", "not", "protcol", ":", "protcol", "=", "mzidtsvdata", ".", "HEADER_MASTER_PROT", "top_ms1_psms", "=", "generate_top_psms", "(", "psms", ","...	50.846154	15.615385
def _get_ref_info_helper(cls, repo, ref_path): """Return: (str(sha), str(target_ref_path)) if available, the sha the file at rela_path points to, or None. target_ref_path is the reference we point to, or None""" tokens = None repodir = _git_dir(repo, ref_path) try: ...	[ "def", "_get_ref_info_helper", "(", "cls", ",", "repo", ",", "ref_path", ")", ":", "tokens", "=", "None", "repodir", "=", "_git_dir", "(", "repo", ",", "ref_path", ")", "try", ":", "with", "open", "(", "osp", ".", "join", "(", "repodir", ",", "ref_path...	42.864865	18.405405
def run_maelstrom(infile, genome, outdir, pwmfile=None, plot=True, cluster=False, score_table=None, count_table=None, methods=None, ncpus=None): """Run maelstrom on an input table. Parameters ---------- infile : str Filename of input table. Can be either a text-separated tab file o...	[ "def", "run_maelstrom", "(", "infile", ",", "genome", ",", "outdir", ",", "pwmfile", "=", "None", ",", "plot", "=", "True", ",", "cluster", "=", "False", ",", "score_table", "=", "None", ",", "count_table", "=", "None", ",", "methods", "=", "None", ","...	35.653631	19.821229
def GetService(self, service_name, version=None, server=None): """Creates a service client for the given service. Args: service_name: A string identifying which AdWords service to create a service client for. [optional] version: A string identifying the AdWords version to connect to...	[ "def", "GetService", "(", "self", ",", "service_name", ",", "version", "=", "None", ",", "server", "=", "None", ")", ":", "if", "not", "server", ":", "server", "=", "_DEFAULT_ENDPOINT", "server", "=", "server", ".", "rstrip", "(", "'/'", ")", "if", "no...	35.64	24.82
def glob(cls, files=None): ''' Glob a pattern or a list of pattern static storage relative(s). ''' files = files or [] if isinstance(files, str): files = os.path.normpath(files) matches = lambda path: matches_patterns(path, [files]) return [pat...	[ "def", "glob", "(", "cls", ",", "files", "=", "None", ")", ":", "files", "=", "files", "or", "[", "]", "if", "isinstance", "(", "files", ",", "str", ")", ":", "files", "=", "os", ".", "path", ".", "normpath", "(", "files", ")", "matches", "=", ...	43.9375	18.4375
def _determine_username(self, ip): """SSH in as root and determine the username.""" ssh = subprocess.Popen([ "ssh", "-o", "UserKnownHostsFile=/dev/null", "-o", "StrictHostKeyChecking=no", "root@%s" % ip], stdin=subprocess.DEVNULL, s...	[ "def", "_determine_username", "(", "self", ",", "ip", ")", ":", "ssh", "=", "subprocess", ".", "Popen", "(", "[", "\"ssh\"", ",", "\"-o\"", ",", "\"UserKnownHostsFile=/dev/null\"", ",", "\"-o\"", ",", "\"StrictHostKeyChecking=no\"", ",", "\"root@%s\"", "%", "ip"...	34.809524	12.428571
def hacking_docstring_summary(physical_line, previous_logical, tokens): r"""Check multi line docstring summary is separated with empty line. OpenStack HACKING guide recommendation for docstring: Docstring should start with a one-line summary, less than 80 characters. Okay: def foo():\n a = '''\nnot...	[ "def", "hacking_docstring_summary", "(", "physical_line", ",", "previous_logical", ",", "tokens", ")", ":", "docstring", "=", "is_docstring", "(", "tokens", ",", "previous_logical", ")", "if", "docstring", ":", "if", "'\\n'", "not", "in", "docstring", ":", "# no...	44.086957	16.217391
def comment_lines(lines): """Comment out the given list of lines and return them. The hash mark will be inserted before the first non-whitespace character on each line.""" ret = [] for line in lines: ws_prefix, rest, ignore = RE_LINE_SPLITTER_COMMENT.match(line).groups() ret.append(ws_p...	[ "def", "comment_lines", "(", "lines", ")", ":", "ret", "=", "[", "]", "for", "line", "in", "lines", ":", "ws_prefix", ",", "rest", ",", "ignore", "=", "RE_LINE_SPLITTER_COMMENT", ".", "match", "(", "line", ")", ".", "groups", "(", ")", "ret", ".", "a...	44.5	14.875
def get_filebase(path, pattern): """Get the end of path of same length as pattern.""" # A pattern can include directories tail_len = len(pattern.split(os.path.sep)) return os.path.join(*str(path).split(os.path.sep)[-tail_len:])	[ "def", "get_filebase", "(", "path", ",", "pattern", ")", ":", "# A pattern can include directories", "tail_len", "=", "len", "(", "pattern", ".", "split", "(", "os", ".", "path", ".", "sep", ")", ")", "return", "os", ".", "path", ".", "join", "(", "*", ...	48.6	8.2
def __get_global_options(cmd_line_options, conf_file_options=None): """ Get all global options :type cmd_line_options: dict :param cmd_line_options: Dictionary with all command line options :type conf_file_options: dict :param conf_file_options: Dictionary with all config file options :returns:...	[ "def", "__get_global_options", "(", "cmd_line_options", ",", "conf_file_options", "=", "None", ")", ":", "options", "=", "{", "}", "for", "option", "in", "DEFAULT_OPTIONS", "[", "'global'", "]", ".", "keys", "(", ")", ":", "options", "[", "option", "]", "=...	33.238095	22.238095
def addTextOut(self, text): """add black text""" self._currentColor = self._black self.addText(text)	[ "def", "addTextOut", "(", "self", ",", "text", ")", ":", "self", ".", "_currentColor", "=", "self", ".", "_black", "self", ".", "addText", "(", "text", ")" ]	30.25	6.75
def upgrade(self): """Upgrade deployment.""" if not self.is_valid: raise PolyaxonDeploymentConfigError( 'Deployment type `{}` not supported'.format(self.deployment_type)) if self.is_kubernetes: self.upgrade_on_kubernetes() elif self.is_docker_comp...	[ "def", "upgrade", "(", "self", ")", ":", "if", "not", "self", ".", "is_valid", ":", "raise", "PolyaxonDeploymentConfigError", "(", "'Deployment type `{}` not supported'", ".", "format", "(", "self", ".", "deployment_type", ")", ")", "if", "self", ".", "is_kubern...	34.857143	12.357143
def shutdown(self): """Shuts down the scheduler and immediately end all pending callbacks. """ # Drop all pending item from the executor. Without this, the executor # will block until all pending items are complete, which is # undesirable. try: while True: ...	[ "def", "shutdown", "(", "self", ")", ":", "# Drop all pending item from the executor. Without this, the executor", "# will block until all pending items are complete, which is", "# undesirable.", "try", ":", "while", "True", ":", "self", ".", "_executor", ".", "_work_queue", "....	37	17.583333
def RemoveMultiLineCommentsFromRange(lines, begin, end): """Clears a range of lines for multi-line comments.""" # Having // dummy comments makes the lines non-empty, so we will not get # unnecessary blank line warnings later in the code. for i in range(begin, end): lines[i] = '/**/'	[ "def", "RemoveMultiLineCommentsFromRange", "(", "lines", ",", "begin", ",", "end", ")", ":", "# Having // dummy comments makes the lines non-empty, so we will not get", "# unnecessary blank line warnings later in the code.", "for", "i", "in", "range", "(", "begin", ",", "end", ...	48.333333	15.666667
def _from_nested_schema(self, obj, field): """Support nested field.""" if isinstance(field.nested, basestring): nested = get_class(field.nested) else: nested = field.nested name = nested.__name__ outer_name = obj.__class__.__name__ only = field.on...	[ "def", "_from_nested_schema", "(", "self", ",", "obj", ",", "field", ")", ":", "if", "isinstance", "(", "field", ".", "nested", ",", "basestring", ")", ":", "nested", "=", "get_class", "(", "field", ".", "nested", ")", "else", ":", "nested", "=", "fiel...	34.076923	19.326923
def delete(self, robj, rw=None, r=None, w=None, dw=None, pr=None, pw=None, timeout=None): """ Delete an object. """ # We could detect quorum_controls here but HTTP ignores # unknown flags/params. params = {'rw': rw, 'r': r, 'w': w, 'dw': dw, 'pr': pr, 'pw':...	[ "def", "delete", "(", "self", ",", "robj", ",", "rw", "=", "None", ",", "r", "=", "None", ",", "w", "=", "None", ",", "dw", "=", "None", ",", "pr", "=", "None", ",", "pw", "=", "None", ",", "timeout", "=", "None", ")", ":", "# We could detect q...	41.318182	19.954545
def current_time_is_in_interval(start, end): """ Determine whether the current time is on the interval [start, end]. """ interval_start = parse_lms_api_datetime(start or UNIX_MIN_DATE_STRING) interval_end = parse_lms_api_datetime(end or UNIX_MAX_DATE_STRING) return interval_start <= timezone.now...	[ "def", "current_time_is_in_interval", "(", "start", ",", "end", ")", ":", "interval_start", "=", "parse_lms_api_datetime", "(", "start", "or", "UNIX_MIN_DATE_STRING", ")", "interval_end", "=", "parse_lms_api_datetime", "(", "end", "or", "UNIX_MAX_DATE_STRING", ")", "r...	47.428571	16.857143
def rn_theory(af, b): """ R(n) ratio expected from theory for given noise type alpha = b + 2 """ # From IEEE1139-2008 # alpha beta ADEV_mu MDEV_mu Rn_mu # -2 -4 1 1 0 Random Walk FM # -1 -3 0 0 0 Flicker FM # ...	[ "def", "rn_theory", "(", "af", ",", "b", ")", ":", "# From IEEE1139-2008", "# alpha beta ADEV_mu MDEV_mu Rn_mu", "# -2 -4 1 1 0 Random Walk FM", "# -1 -3 0 0 0 Flicker FM", "# 0 -2 -1 -1 0 White F...	33.461538	17.346154
def data(self, index, role=Qt.DisplayRole): """return data depending on index, Qt::ItemDataRole and data type of the column. Args: index (QtCore.QModelIndex): Index to define column and row you want to return role (Qt::ItemDataRole): Define which data you want to return. ...	[ "def", "data", "(", "self", ",", "index", ",", "role", "=", "Qt", ".", "DisplayRole", ")", ":", "if", "not", "index", ".", "isValid", "(", ")", ":", "return", "None", "def", "convertValue", "(", "row", ",", "col", ",", "columnDtype", ")", ":", "val...	46.511628	25.174419

def plot(self, *args, **kwargs): """Plot data onto these axes Parameters ---------- args a single instance of - `~gwpy.segments.DataQualityFlag` - `~gwpy.segments.Segment` - `~gwpy.segments.SegmentList` - `~gwp...

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def ls_(path='/', profile=None, **kwargs): ''' .. versionadded:: 2014.7.0 Return all keys and dirs inside a specific path. Returns an empty dict on failure. CLI Example: .. code-block:: bash salt myminion etcd.ls /path/to/dir/ salt myminion etcd.ls /path/to/dir/ profile=my_e...

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def update_or_create(self, attributes, values=None, joining=None, touch=True): """ Create or update a related record matching the attributes, and fill it with values. :param attributes: The attributes :type attributes: dict :param values: The values :type values: dict ...

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def __gridconnections(self): """Level-2 parser for gridconnections. pattern: object 2 class gridconnections counts 97 93 99 """ try: tok = self.__consume() except DXParserNoTokens: return if tok.equals('counts'): shape = [] ...

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def pkginfo_to_metadata(egg_info_path, pkginfo_path): """ Convert .egg-info directory with PKG-INFO to the Metadata 2.1 format """ pkg_info = read_pkg_info(pkginfo_path) pkg_info.replace_header('Metadata-Version', '2.1') requires_path = os.path.join(egg_info_path, 'requires.txt') if os.path....

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def to_html(self): """Render a Text MessageElement as html Args: None Returns: Str the html representation of the Text MessageElement Raises: Errors are propagated """ if self.items is None: return else: ...

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def assemble_phi5_works_filepaths(): """Reads PHI5 index and builds a list of absolute filepaths.""" plaintext_dir_rel = '~/cltk_data/latin/text/phi5/individual_works/' plaintext_dir = os.path.expanduser(plaintext_dir_rel) all_filepaths = [] for author_code in PHI5_WORKS_INDEX: author_data =...

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def real_time_statistics(self): """ Access the real_time_statistics :returns: twilio.rest.taskrouter.v1.workspace.workflow.workflow_real_time_statistics.WorkflowRealTimeStatisticsList :rtype: twilio.rest.taskrouter.v1.workspace.workflow.workflow_real_time_statistics.WorkflowRealTimeStat...

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def create_silence(length): """Create a piece of silence.""" data = bytearray(length) i = 0 while i < length: data[i] = 128 i += 1 return data

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def _to_dict(self): """Return a json dictionary representing this model.""" _dict = {} if hasattr(self, 'limit') and self.limit is not None: _dict['limit'] = self.limit return _dict

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def sync_blockchain( working_dir, bt_opts, last_block, server_state, expected_snapshots={}, **virtualchain_args ): """ synchronize state with the blockchain. Return True on success Return False if we're supposed to stop indexing Abort on error """ subdomain_index = server_state['subdoma...

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def BE8(value, min_value=None, max_value=None, fuzzable=True, name=None, full_range=False): '''8-bit field, Big endian encoded''' return UInt8(value, min_value=min_value, max_value=max_value, encoder=ENC_INT_BE, fuzzable=fuzzable, name=name, full_range=full_range)

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def flag_message(current): """ Flag inappropriate messages .. code-block:: python # request: { 'view':'_zops_flag_message', 'message_key': key, } # response: { ' 'status': 'Created', 'code': 201, ...

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def variance(self) -> Optional[float]: #, ddof: int = 0) -> float: """Statistical variance of all values entered into histogram. This number is precise, because we keep the necessary data separate from bin contents. Returns ------- float """ # TODO: Add...

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def save_csv(self): """ Dump all results to CSV. """ # Sort results so we can start to see patterns right in the raw CSV. self.results.sort_values(by=self.column_ids, inplace=True) # Gotcha: integers seems to be promoted to float64 because of # reindexation. See: https://pandas.p...

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def check_anchor(self, url_data): """If URL is valid, parseable and has an anchor, check it. A warning is logged and True is returned if the anchor is not found. """ log.debug(LOG_PLUGIN, "checking anchor %r in %s", url_data.anchor, self.anchors) enc = lambda anchor: urlutil.url_...

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def get_value_product_unique(self, pos): """ Return all products unique relationship with POS's Storage (only salable zones) """ qs = ProductUnique.objects.filter( box__box_structure__zone__storage__in=pos.storage_stock.filter(storage_zones__salable=True), product...

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def update_course(self, course, enterprise_customer, enterprise_context): """ Update course metadata of the given course and return updated course. Arguments: course (dict): Course Metadata returned by course catalog API enterprise_customer (EnterpriseCustomer): enterpri...

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def H13(self): "Information measure of correlation 2." # An imaginary result has been encountered once in the Matlab # version. The reason is unclear. return np.sqrt(1 - np.exp(-2 * (self.hxy2 - self.H9())))

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def _parse_metadata(response): ''' Extracts out resource metadata information. ''' if response is None or response.headers is None: return None metadata = _dict() for key, value in response.headers.items(): if key.lower().startswith('x-ms-meta-'): metadata[key[10:]]...

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def _init(self): """Create and grid the widgets.""" for label in self.ticklabels: label.destroy() self.label.place_forget() self.ticks = [] self.ticklabels = [] if self._resolution > 0: nb_steps = round((self.scale.cget('to') - self.scale.cget('fro...

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def vor_to_am(vor): r""" Given a Voronoi tessellation object from Scipy's ``spatial`` module, converts to a sparse adjacency matrix network representation in COO format. Parameters ---------- vor : Voronoi Tessellation object This object is produced by ``scipy.spatial.Voronoi`` Ret...

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def content(): """Helper method that returns just the content. This method was added so that the text could be reused in the dock_help module. .. versionadded:: 3.2.2 :returns: A message object without brand element. :rtype: safe.messaging.message.Message """ message = m.Message() ...

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def _condition_as_sql(self, qn, connection): ''' Return sql for condition. ''' def escape(value): if isinstance(value, bool): value = str(int(value)) if isinstance(value, six.string_types): # Escape params used with LIKE ...

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def keys(self, element=None, mode=None): r""" This subclass works exactly like ``keys`` when no arguments are passed, but optionally accepts an ``element`` and/or a ``mode``, which filters the output to only the requested keys. The default behavior is exactly equivalent to the n...

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def _filter_headers(self): """ Add headers designed for filtering messages based on objects. Returns: dict: Filter-related headers to be combined with the existing headers """ headers = {} for user in self.usernames: headers["fedora_messaging_user...

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def enable_request_loader(): """ Enable request loader Optional user loader based on incomin request object. This is useful to enable on top of default user loader if you want to authenticate API requests via bearer token header. :return: """ @login_manager.request_loader def load_us...

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def evaluate(obj, array): """Evaluate a ROOT histogram, function, graph, or spline over an array. Parameters ---------- obj : TH[1|2|3], TF[1|2|3], TFormula, TGraph, TSpline, or string A ROOT histogram, function, formula, graph, spline, or string. If a string is specified, a TFormula is...

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def rest_get(self, url, params=None, headers=None, auth=None, verify=True, cert=None): """ Perform a GET request to url with optional authentication """ res = requests.get(url, params=params, headers=headers, auth=auth, verify=verify, cert=cert) return ...

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def list_cache_nodes_full(opts=None, provider=None, base=None): ''' Return a list of minion data from the cloud cache, rather from the cloud providers themselves. This is the cloud cache version of list_nodes_full(). ''' if opts is None: opts = __opts__ if opts.get('update_cachedir', Fal...

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def render_template(self, template_parameters, template_id): """RenderTemplate. [Preview API] :param :class:`<TemplateParameters> <azure.devops.v5_1.cix.models.TemplateParameters>` template_parameters: :param str template_id: :rtype: :class:`<Template> <azure.devops.v5_1.cix.mode...

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53.823529

22

def _cartesian(arraySizes, out=None): """ NAME: cartesian PURPOSE: Generate a cartesian product of input arrays. INPUT: arraySizes - list of size of arrays out - Array to place the cartesian product in. OUTPUT: 2-D array of shape (product(arraySizes), len(ar...

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31.617647

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def run(locations, random, bikes, crime, nearby, json, update_bikes, api_server, cross_origin, host, port, db_path, verbose): """ Runs the program. Takes a list of postcodes or coordinates and returns various information about them. If using the cli, make sure to update the bikes database with t...

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39.925926

24.074074

def _toState(self, state, *args, **kwargs): """ Transition to the next state. @param state: Name of the next state. """ try: method = getattr(self, '_state_%s' % state) except AttributeError: raise ValueError("No such state %r" % state) l...

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30.5

15.071429

def pre_save(sender, instance, raw, using, update_fields, **kwargs): """https://docs.djangoproject.com/es/1.10/ref/signals/#post-save""" if raw: # Return if loading Fixtures return try: with transaction.atomic(): if not should_audit(instance): return Fals...

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42.176471

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def _fetchSequence(ac, startIndex=None, endIndex=None): """Fetch sequences from NCBI using the eself interface. An interbase interval may be optionally provided with startIndex and endIndex. NCBI eself will return just the requested subsequence, which might greatly reduce payload sizes (especially with...

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36.162162

21.675676

def drop_schema(self, schema, cascade=False): """Drop specified schema """ if schema in self.schemas: sql = "DROP SCHEMA " + schema if cascade: sql = sql + " CASCADE" self.execute(sql)

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31.625

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def change_sample(self, old_samp_name, new_samp_name, new_site_name=None, new_er_data=None, new_pmag_data=None, replace_data=False): """ Find actual data objects for sample and site. Then call Sample class change method to update sample name and data.. """ s...

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50.75

21.6

def get(self, index: pd.Index, query: str='', omit_missing_columns: bool=False) -> pd.DataFrame: """For the rows in ``index`` get the columns from the simulation's population which this view is configured. The result may be further filtered by the view's query. Parameters ---------- ...

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40.35

26.175

def main(): """Simple test.""" from spyder.utils.qthelpers import qapplication app = qapplication() widget = NotebookClient(plugin=None, name='') widget.show() widget.set_url('http://google.com') sys.exit(app.exec_())

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29.75

13

def dim_lower_extent(self, *args, **kwargs): """ Returns the lower extent of the dimensions in args. .. code-block:: python t_ex, bl_ex, ch_ex = cube.dim_lower_extent('ntime', 'nbl', 'nchan') or .. code-block:: python t_ex, bl_ex, ch_ex, src_ex = cube...

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30.842105

25.157895

def data_to_bytes(data, encoding): """\ Converts the provided data into bytes. If the data is already a byte sequence, it will be left unchanged. This function tries to use the provided `encoding` (if not ``None``) or the default encoding (ISO/IEC 8859-1). It uses UTF-8 as fallback. Returns th...

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35.972222

15.5

def ajax_recalculate_records(self): """Recalculate all AR records and dependencies - samples - templates - profiles - services - dependecies XXX: This function has grown too much and needs refactoring! """ out = {} # ...

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45.155963

17.655963

def _get_stddevs(self, C, rup, shape, stddev_types): """ Return standard deviations as defined in p. 971. """ weight = self._compute_weight_std(C, rup.mag) std_intra = weight * C["sd1"] * np.ones(shape) std_inter = weight * C["sd2"] * np.ones(shape) ...

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44

14.666667

def is_bifurcating(self, include_root=True): """ Returns False if there is a polytomy in the tree, including if the tree is unrooted (basal polytomy), unless you use the include_root=False argument. """ ctn1 = -1 + (2 * len(self)) ctn2 = -2 + (2 * len(self)) ...

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44.538462

18.384615

def OnPreferences(self, event): """Preferences event handler that launches preferences dialog""" preferences = self.interfaces.get_preferences_from_user() if preferences: for key in preferences: if type(config[key]) in (type(u""), type("")): conf...

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38.071429

20.071429

def client_sends_binary(self, message, name=None, label=None): """Send raw binary `message`. If client `name` is not given, uses the latest client. Optional message `label` is shown on logs. Examples: | Client sends binary | Hello! | | Client sends binary | ${some binar...

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37.692308

18.923077

def generate_orbital_path(self, factor=3., n_points=20, viewup=None, z_shift=None): """Genrates an orbital path around the data scene Parameters ---------- facotr : float A scaling factor when biulding the orbital extent n_points : int number of points o...

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34.448276

18.103448

def list(self, teamId=None, type=None, sortBy=None, max=None, **request_parameters): """List rooms. By default, lists rooms to which the authenticated user belongs. This method supports Webex Teams's implementation of RFC5988 Web Linking to provide pagination support. It ...

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41.844828

24.517241

def _complete_original_tasks( self, setName): """*mark original tasks as completed if they are marked as complete in the index taskpaper document* **Key Arguments:** - ``setName`` -- the name of the sync tag set """ self.log.info('starting the ``_comp...

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36.169492

19.440678

def appliance_device_read_community(self): """ Gets the ApplianceDeviceReadCommunity API client. Returns: ApplianceDeviceReadCommunity: """ if not self.__appliance_device_read_community: self.__appliance_device_read_community = ApplianceDeviceReadCommunit...

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38.5

17.1

def _update_param(self): r"""Update parameters This method updates the values of the algorthm parameters with the methods provided """ # Update relaxation parameter. if not isinstance(self._rho_update, type(None)): self._rho = self._rho_update(self._rho) ...

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32.263158

19

def frames(self, key=None, orig_order=False): """Returns a list of frames in this tag. If KEY is None, returns all frames in the tag; otherwise returns all frames whose frameid matches KEY. If ORIG_ORDER is True, then the frames are returned in their original order. Othe...

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39.37931

15.551724

def _setup(self): """ Run setup tasks after initialization """ self._populate_local() try: self._populate_latest() except Exception as e: self.log.exception('Unable to retrieve latest %s version information', self.meta_name) self._sort()

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30.8

15.8

def gist_diff(): """Diff this file with the gist on github""" remote_file = wget(RAW_GIST) proc = subprocess.Popen(('diff - %s'%MY_PATH).split(), stdin=subprocess.PIPE, stdout=subprocess.PIPE) stdout, stderr = proc.communicate(remote_file) retu...

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40.25

13

def verb_chain_ends(self): """The end positions of ``verb_chains`` elements.""" if not self.is_tagged(VERB_CHAINS): self.tag_verb_chains() return self.ends(VERB_CHAINS)

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40

5.2

def reducer_count(self, key, values): """ count occurences for each (metro, POI) record """ total = sum(values) metro, poi = key # group data by metro areas for final output yield metro, (total, poi)

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39.666667

9.166667

def frequencies(self, sides=None): """Return the frequency vector according to :attr:`sides`""" # use the attribute sides except if a valid sides argument is provided if sides is None: sides = self.sides if sides not in self._sides_choices: raise errors.SpectrumC...

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37.8

14.333333

def prob(self, pw): """ returns the probabiltiy of pw in the model. P[pw] = n(pw)/n(__total__) """ return float(self._T.get(pw, 0)) / self._T[TOTALF_W]

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31

9.666667

def from_string(date_str): """ construction from the following string patterns '%Y-%m-%d' '%d.%m.%Y' '%m/%d/%Y' '%Y%m%d' :param str date_str: :return BusinessDate: """ if date_str.count('-'): str_format = '%Y-%m-%d' eli...

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30.677419

15.258065

def get_name(self): """ Return the name of the field :rtype: string """ if self.name_idx_value == None: self.name_idx_value = self.CM.get_string(self.name_idx) return self.name_idx_value

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24.7

14.9

def redirect_to(): """302/3XX Redirects to the given URL. --- tags: - Redirects produces: - text/html get: parameters: - in: query name: url type: string required: true - in: query name: status_code type: int pos...

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24.236111

18.916667

def hash_vector(self, v, querying=False): """ Hashes the vector and returns the binary bucket key as string. """ if scipy.sparse.issparse(v): # If vector is sparse, make sure we have the CSR representation # of the projection matrix if self.normals_csr...

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43.16129

20.516129

def start(self, func=None): """Start the roaster control process. This function will kick off the processing thread for the Hottop and register any user-defined callback function. By default, it will not begin collecting any reading information or saving it. In order to do that ...

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43.904762

22.952381

def fo_pct_by_zone(self): """ Get the by team face-off win % by zone. Format is :returns: dict ``{ 'home/away': { 'off/def/neut': % } }`` """ bz = self.by_zone return { t: { z: bz[t][z]['won']/(1.0*bz[t][z]['total']) if bz[t][z]['t...

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29.0625

18.5625

def parserunstats(self): """Parses the XML run statistics file (GenerateFASTQRunStatistics.xml). In some cases, the file is not available. Equivalent data can be pulled from Basespace.Generate a text file name indexingQC.txt containing the copied tables from the Indexing QC tab of the run on Ba...

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66.982143

29.142857

def notification_sm_changed(self, model, prop_name, info): """Remove references to non-existing state machines""" for state_machine_id in list(self._expansion_state.keys()): if state_machine_id not in self.model.state_machines: del self._expansion_state[state_machine_id]

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62.2

17.8

def formatDuration(self, duration): """Format the duration. This method could be overridden if really needed, as the duration format in gerrit is an arbitrary string. :param duration: duration in timedelta """ days = duration.days hours, remainder = divmod(durati...

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42.3125

18.5625

def allocate(self): """Initializes libvirt resources.""" disk_path = self.provider_image self._hypervisor = libvirt.open( self.configuration.get('hypervisor', 'vbox:///session')) self._domain = domain_create(self._hypervisor, self.identifier, ...

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39.777778

22

def replay_detection_negotiated(self): """ After :meth:`step` has been called, this property will be set to True if the security context can use replay detection for messages protected by :meth:`get_mic` and :meth:`wrap`. False if replay detection cannot be used. """ retu...

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41.454545

21.636364

def get_policy_type(self, project, type_id): """GetPolicyType. Retrieve a specific policy type by ID. :param str project: Project ID or project name :param str type_id: The policy ID. :rtype: :class:`<PolicyType> <azure.devops.v5_0.policy.models.PolicyType>` """ r...

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49.588235

16.058824

def cancel(self, mark_completed_as_cancelled=False): """ Cancel the future. If the future has not been started yet, it will never start running. If the future is already running, it will run until the worker function exists. The worker function can check if the future has been cancelled using the :m...

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42.631579

24.526316

def data_x_range(self): """Return a 2-tuple giving the minimum and maximum x-axis data range. """ try: lower = min([min(self._filter_none(s)) for type, s in self.annotated_data() if type == 'x']) upper = max([max(s...

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36.857143

12

def get_clamav_conf(filename): """Initialize clamav configuration.""" if os.path.isfile(filename): return ClamavConfig(filename) log.warn(LOG_PLUGIN, "No ClamAV config file found at %r.", filename)

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42.6

10.6

def processResponse(cls, soapdata, **kw): """called by deferred, returns pyobj representing reply. Parameters and Key Words: soapdata -- SOAP Data replytype -- reply type of response """ if len(soapdata) == 0: raise TypeError('Received empty response') # ...

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def groups_unarchive(self, room_id, **kwargs): """Unarchives a private group.""" return self.__call_api_post('groups.unarchive', roomId=room_id, kwargs=kwargs)

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def execute(self, conn, app="", release_version="", pset_hash="", output_label="", global_tag='', transaction = False): """ returns id for a given application """ sql = self.sql binds = {} setAnd=False if not app == "": sql += " A.APP_NAME=:app_name" binds[...

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def create_dvportgroup(portgroup_dict, portgroup_name, dvs, service_instance=None): ''' Creates a distributed virtual portgroup. Note: The ``portgroup_name`` param will override any name already set in ``portgroup_dict``. portgroup_dict Dictionary with the config val...

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def _clean_algorithm(data): """Clean algorithm keys, handling items that can be specified as lists or single items. """ # convert single items to lists for key in ["variantcaller", "jointcaller", "svcaller"]: val = tz.get_in(["algorithm", key], data) if val: if not isinstance...

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def _set_clear_mpls_rsvp_statistics(self, v, load=False): """ Setter method for clear_mpls_rsvp_statistics, mapped from YANG variable /brocade_mpls_rpc/clear_mpls_rsvp_statistics (rpc) If this variable is read-only (config: false) in the source YANG file, then _set_clear_mpls_rsvp_statistics is consider...

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def source_model_info(nodes): """ Extract information about NRML/0.5 source models. Returns a table with TRTs as rows and source classes as columns. """ c = collections.Counter() for node in nodes: for src_group in node: trt = src_group['tectonicRegion'] for src i...

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def add_ms1_quant_from_top3_mzidtsv(proteins, psms, headerfields, protcol): """Collects PSMs with the highes precursor quant values, adds sum of the top 3 of these to a protein table""" if not protcol: protcol = mzidtsvdata.HEADER_MASTER_PROT top_ms1_psms = generate_top_psms(psms, protcol) f...

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def _get_ref_info_helper(cls, repo, ref_path): """Return: (str(sha), str(target_ref_path)) if available, the sha the file at rela_path points to, or None. target_ref_path is the reference we point to, or None""" tokens = None repodir = _git_dir(repo, ref_path) try: ...

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def run_maelstrom(infile, genome, outdir, pwmfile=None, plot=True, cluster=False, score_table=None, count_table=None, methods=None, ncpus=None): """Run maelstrom on an input table. Parameters ---------- infile : str Filename of input table. Can be either a text-separated tab file o...

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def GetService(self, service_name, version=None, server=None): """Creates a service client for the given service. Args: service_name: A string identifying which AdWords service to create a service client for. [optional] version: A string identifying the AdWords version to connect to...

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def glob(cls, files=None): ''' Glob a pattern or a list of pattern static storage relative(s). ''' files = files or [] if isinstance(files, str): files = os.path.normpath(files) matches = lambda path: matches_patterns(path, [files]) return [pat...

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def _determine_username(self, ip): """SSH in as root and determine the username.""" ssh = subprocess.Popen([ "ssh", "-o", "UserKnownHostsFile=/dev/null", "-o", "StrictHostKeyChecking=no", "root@%s" % ip], stdin=subprocess.DEVNULL, s...

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def hacking_docstring_summary(physical_line, previous_logical, tokens): r"""Check multi line docstring summary is separated with empty line. OpenStack HACKING guide recommendation for docstring: Docstring should start with a one-line summary, less than 80 characters. Okay: def foo():\n a = '''\nnot...

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def comment_lines(lines): """Comment out the given list of lines and return them. The hash mark will be inserted before the first non-whitespace character on each line.""" ret = [] for line in lines: ws_prefix, rest, ignore = RE_LINE_SPLITTER_COMMENT.match(line).groups() ret.append(ws_p...

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def get_filebase(path, pattern): """Get the end of *path* of same length as *pattern*.""" # A pattern can include directories tail_len = len(pattern.split(os.path.sep)) return os.path.join(*str(path).split(os.path.sep)[-tail_len:])

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def __get_global_options(cmd_line_options, conf_file_options=None): """ Get all global options :type cmd_line_options: dict :param cmd_line_options: Dictionary with all command line options :type conf_file_options: dict :param conf_file_options: Dictionary with all config file options :returns:...

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def addTextOut(self, text): """add black text""" self._currentColor = self._black self.addText(text)

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def upgrade(self): """Upgrade deployment.""" if not self.is_valid: raise PolyaxonDeploymentConfigError( 'Deployment type `{}` not supported'.format(self.deployment_type)) if self.is_kubernetes: self.upgrade_on_kubernetes() elif self.is_docker_comp...

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def shutdown(self): """Shuts down the scheduler and immediately end all pending callbacks. """ # Drop all pending item from the executor. Without this, the executor # will block until all pending items are complete, which is # undesirable. try: while True: ...

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def RemoveMultiLineCommentsFromRange(lines, begin, end): """Clears a range of lines for multi-line comments.""" # Having // dummy comments makes the lines non-empty, so we will not get # unnecessary blank line warnings later in the code. for i in range(begin, end): lines[i] = '/**/'

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def _from_nested_schema(self, obj, field): """Support nested field.""" if isinstance(field.nested, basestring): nested = get_class(field.nested) else: nested = field.nested name = nested.__name__ outer_name = obj.__class__.__name__ only = field.on...

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def delete(self, robj, rw=None, r=None, w=None, dw=None, pr=None, pw=None, timeout=None): """ Delete an object. """ # We could detect quorum_controls here but HTTP ignores # unknown flags/params. params = {'rw': rw, 'r': r, 'w': w, 'dw': dw, 'pr': pr, 'pw':...

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def current_time_is_in_interval(start, end): """ Determine whether the current time is on the interval [start, end]. """ interval_start = parse_lms_api_datetime(start or UNIX_MIN_DATE_STRING) interval_end = parse_lms_api_datetime(end or UNIX_MAX_DATE_STRING) return interval_start <= timezone.now...

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def rn_theory(af, b): """ R(n) ratio expected from theory for given noise type alpha = b + 2 """ # From IEEE1139-2008 # alpha beta ADEV_mu MDEV_mu Rn_mu # -2 -4 1 1 0 Random Walk FM # -1 -3 0 0 0 Flicker FM # ...

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def data(self, index, role=Qt.DisplayRole): """return data depending on index, Qt::ItemDataRole and data type of the column. Args: index (QtCore.QModelIndex): Index to define column and row you want to return role (Qt::ItemDataRole): Define which data you want to return. ...

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