kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def get_mfd(self, slip, area, shear_modulus=30.0): ''' Calculates activity rate on the fault :param float slip: Slip rate in mm/yr :param fault_width: Width of the fault (km) :param float disp_length_ratio: Displacement to length ratio (dime...	[ "def", "get_mfd", "(", "self", ",", "slip", ",", "area", ",", "shear_modulus", "=", "30.0", ")", ":", "# Working in Nm so convert: shear_modulus - GPa -> Nm", "# area - km 2. -> m 2.", "# slip - mm/yr -> m/yr", "moment_rate", "=", "(", "shear_modulus", "*", "1.E9",...	40.608696	19.173913
def _select_concept(self, line): """try to match a class and load it""" g = self.current['graph'] if not line: out = g.all_skos_concepts using_pattern = False else: using_pattern = True if line.isdigit(): line = int(line) ...	[ "def", "_select_concept", "(", "self", ",", "line", ")", ":", "g", "=", "self", ".", "current", "[", "'graph'", "]", "if", "not", "line", ":", "out", "=", "g", ".", "all_skos_concepts", "using_pattern", "=", "False", "else", ":", "using_pattern", "=", ...	37.538462	17.923077
def process_commenters(self): """Group comments by author.""" for index, submission in enumerate(self.submissions.values()): if submission.num_comments == 0: continue real_submission = self.reddit.submission(id=submission.id) real_submission.comment_so...	[ "def", "process_commenters", "(", "self", ")", ":", "for", "index", ",", "submission", "in", "enumerate", "(", "self", ".", "submissions", ".", "values", "(", ")", ")", ":", "if", "submission", ".", "num_comments", "==", "0", ":", "continue", "real_submiss...	40.171429	19.685714
def get_associations(self, env): """ Get all the associations for this env. Root cannot have associations, so return None for root. returns a map of hostnames to environments. """ if env.is_root: return None associations = self.associations.get_all...	[ "def", "get_associations", "(", "self", ",", "env", ")", ":", "if", "env", ".", "is_root", ":", "return", "None", "associations", "=", "self", ".", "associations", ".", "get_all", "(", ")", "return", "[", "assoc", "for", "assoc", "in", "associations", "i...	28.266667	19.066667
def b64_hmac_md5(key, data): """ return base64-encoded HMAC-MD5 for key and data, with trailing '=' stripped. """ bdigest = base64.b64encode(hmac.new(key, data, _md5).digest()).strip().decode("utf-8") return re.sub('=+$', '', bdigest)	[ "def", "b64_hmac_md5", "(", "key", ",", "data", ")", ":", "bdigest", "=", "base64", ".", "b64encode", "(", "hmac", ".", "new", "(", "key", ",", "data", ",", "_md5", ")", ".", "digest", "(", ")", ")", ".", "strip", "(", ")", ".", "decode", "(", ...	36	17.428571
def _depaginate_all(self, url): """GETs the url provided and traverses the 'next' url that's returned while storing the data in a list. Returns a single list of all items. """ items = [] for x in self._depagination_generator(url): items += x return ite...	[ "def", "_depaginate_all", "(", "self", ",", "url", ")", ":", "items", "=", "[", "]", "for", "x", "in", "self", ".", "_depagination_generator", "(", "url", ")", ":", "items", "+=", "x", "return", "items" ]	34.888889	16.111111
def get_build_metadata(key): '''get_build_metadata will return metadata about an instance from within it. :param key: the key to look up ''' headers = {"Metadata-Flavor":"Google"} url = "http://metadata.google.internal/computeMetadata/v1/instance/attributes/%s" %(key) response = requests...	[ "def", "get_build_metadata", "(", "key", ")", ":", "headers", "=", "{", "\"Metadata-Flavor\"", ":", "\"Google\"", "}", "url", "=", "\"http://metadata.google.internal/computeMetadata/v1/instance/attributes/%s\"", "%", "(", "key", ")", "response", "=", "requests", ".", ...	42.1	20.7
def list_assignment_submissions_courses(self, course_id, assignment_id, grouped=None, include=None): """ List assignment submissions. Get all existing submissions for an assignment. """ path = {} data = {} params = {} # REQUIRED - PATH - course...	[ "def", "list_assignment_submissions_courses", "(", "self", ",", "course_id", ",", "assignment_id", ",", "grouped", "=", "None", ",", "include", "=", "None", ")", ":", "path", "=", "{", "}", "data", "=", "{", "}", "params", "=", "{", "}", "# REQUIRED - PATH...	44.870968	26.903226
def path_has(self, **kwargs): """ Checks if the current path has a node spec'd by kwargs """ str_node = "/" # This node will always be "False" for key, val in kwargs.items(): if key == 'node': str_node = val if str_node in self...	[ "def", "path_has", "(", "self", ",", "", "", "kwargs", ")", ":", "str_node", "=", "\"/\"", "# This node will always be \"False\"", "for", "key", ",", "val", "in", "kwargs", ".", "items", "(", ")", ":", "if", "key", "==", "'node'", ":", "str_node", "=",...	42.461538	11.846154
def label_correcting_get_cycle(self, j, pred): ''' API: label_correcting_get_cycle(self, labelled, pred) Description: In label correcting check cycle it is decided pred has a cycle and nodes in the cycle are labelled. We will create a list of nodes ...	[ "def", "label_correcting_get_cycle", "(", "self", ",", "j", ",", "pred", ")", ":", "cycle", "=", "[", "]", "cycle", ".", "append", "(", "j", ")", "current", "=", "pred", "[", "j", "]", "while", "current", "!=", "j", ":", "cycle", ".", "append", "("...	38.481481	22.259259
def validate(self, reason=True): # type: (bool) -> list """Return the validation results and include an (optional) reason. If reason keyword is true, the validation is returned for each validation the [(<result: bool>, <reason:str>), ...]. If reason is False, only a single list of valid...	[ "def", "validate", "(", "self", ",", "reason", "=", "True", ")", ":", "# type: (bool) -> list", "self", ".", "_validation_results", "=", "[", "validator", ".", "is_valid", "(", "self", ".", "_value", ")", "for", "validator", "in", "getattr", "(", "self", "...	52.227273	30.272727
def uuid_to_slug(uuid): """ Return IOTile Cloud compatible Device Slug :param uuid: UUID :return: string in the form of d--0000-0000-0000-0001 """ if not isinstance(uuid, int): raise ArgumentError("Invalid id that is not an integer", id=uuid) if uuid < 0 or uuid > 0x7fffffff: ...	[ "def", "uuid_to_slug", "(", "uuid", ")", ":", "if", "not", "isinstance", "(", "uuid", ",", "int", ")", ":", "raise", "ArgumentError", "(", "\"Invalid id that is not an integer\"", ",", "id", "=", "uuid", ")", "if", "uuid", "<", "0", "or", "uuid", ">", "0...	36.4	22.933333
def edge_history(self, source, target, attribute): """ Returns a dictionary of attribute vales for each Graph in the :class:`.GraphCollection` for a single edge. Parameters ---------- source : str Identifier for source node. target : str I...	[ "def", "edge_history", "(", "self", ",", "source", ",", "target", ",", "attribute", ")", ":", "return", "{", "attr", "[", "'graph'", "]", ":", "attr", "[", "attribute", "]", "for", "i", ",", "attr", "in", "self", ".", "master_graph", ".", "edge", "["...	29.238095	19.714286
def _symlink_check(name, target, force, user, group, win_owner): ''' Check the symlink function ''' changes = {} if not os.path.exists(name) and not __salt__['file.is_link'](name): changes['new'] = name return None, 'Symlink {0} to {1} is set for creation'.format( name, t...	[ "def", "_symlink_check", "(", "name", ",", "target", ",", "force", ",", "user", ",", "group", ",", "win_owner", ")", ":", "changes", "=", "{", "}", "if", "not", "os", ".", "path", ".", "exists", "(", "name", ")", "and", "not", "__salt__", "[", "'fi...	44.411765	22.588235
def is_readable(path): ''' Check if a given path is readable by the current user. :param path: The path to check :returns: True or False ''' if os.access(path, os.F_OK) and os.access(path, os.R_OK): # The path exists and is readable return True # The path does not exist ...	[ "def", "is_readable", "(", "path", ")", ":", "if", "os", ".", "access", "(", "path", ",", "os", ".", "F_OK", ")", "and", "os", ".", "access", "(", "path", ",", "os", ".", "R_OK", ")", ":", "# The path exists and is readable", "return", "True", "# The p...	22.928571	22.785714
def rpc(_cloud_rpc_name, **params): """ 调用 LeanEngine 上的远程代码与 cloud.run 类似，但是允许传入 leancloud.Object 作为参数，也允许传入 leancloud.Object 作为结果 :param name: 需要调用的远程 Cloud Code 的名称 :type name: basestring :param params: 调用参数 :return: 调用结果 """ encoded_params = {} for key, value in params.items...	[ "def", "rpc", "(", "_cloud_rpc_name", ",", "", "", "params", ")", ":", "encoded_params", "=", "{", "}", "for", "key", ",", "value", "in", "params", ".", "items", "(", ")", ":", "if", "isinstance", "(", "params", ",", "leancloud", ".", "Object", ")"...	36.666667	15.222222
def publish(self, topic, schema=None, name=None): """ Publish this stream on a topic for other Streams applications to subscribe to. A Streams application may publish a stream to allow other Streams applications to subscribe to it. A subscriber matches a publisher if the topic an...	[ "def", "publish", "(", "self", ",", "topic", ",", "schema", "=", "None", ",", "name", "=", "None", ")", ":", "sl", "=", "_SourceLocation", "(", "_source_info", "(", ")", ",", "'publish'", ")", "schema", "=", "streamsx", ".", "topology", ".", "schema", ...	43.597015	23.955224
def authenticate(self): """ Authenticates with the PA Oauth system """ if self._auth_token is None or self._token_expiry < time.time(): self._perform_auth() yield self._auth_token	[ "def", "authenticate", "(", "self", ")", ":", "if", "self", ".", "_auth_token", "is", "None", "or", "self", ".", "_token_expiry", "<", "time", ".", "time", "(", ")", ":", "self", ".", "_perform_auth", "(", ")", "yield", "self", ".", "_auth_token" ]	28.125	14.125
def parse_pseudo_lang(self, sel, m, has_selector): """Parse pseudo language.""" values = m.group('values') patterns = [] for token in RE_VALUES.finditer(values): if token.group('split'): continue value = token.group('value') if value.s...	[ "def", "parse_pseudo_lang", "(", "self", ",", "sel", ",", "m", ",", "has_selector", ")", ":", "values", "=", "m", ".", "group", "(", "'values'", ")", "patterns", "=", "[", "]", "for", "token", "in", "RE_VALUES", ".", "finditer", "(", "values", ")", "...	36.892857	17.25
def createTable(self, tableName, path=None, source=None, schema=None, **options): """Creates a table based on the dataset in a data source. It returns the DataFrame associated with the table. The data source is specified by the ``source`` and a set of ``options``. If ``source`` is not ...	[ "def", "createTable", "(", "self", ",", "tableName", ",", "path", "=", "None", ",", "source", "=", "None", ",", "schema", "=", "None", ",", "", "", "options", ")", ":", "if", "path", "is", "not", "None", ":", "options", "[", "\"path\"", "]", "=",...	48.962963	28.074074
def add_full_state_methods(class_with_globalize_methods): """ class decorator to create "_full_state" methods/properties on the class (so they are valid for all instances created from this class). Parameters ---------- class_with_globalize_methods """ assert hasattr(class_with_globaliz...	[ "def", "add_full_state_methods", "(", "class_with_globalize_methods", ")", ":", "assert", "hasattr", "(", "class_with_globalize_methods", ",", "'active_set'", ")", "assert", "hasattr", "(", "class_with_globalize_methods", ",", "'nstates_full'", ")", "for", "name", ",", ...	42.133333	25.6
def register(self, schema): """Register input schema class. When registering a schema, all inner schemas are registered as well. :param Schema schema: schema to register. :return: old registered schema. :rtype: type """ result = None uuid = schema.uuid ...	[ "def", "register", "(", "self", ",", "schema", ")", ":", "result", "=", "None", "uuid", "=", "schema", ".", "uuid", "if", "uuid", "in", "self", ".", "_schbyuuid", ":", "result", "=", "self", ".", "_schbyuuid", "[", "uuid", "]", "if", "result", "!=", ...	24.09375	22.65625
def acosh(x): """ Inverse hyperbolic cosine """ if isinstance(x, UncertainFunction): mcpts = np.arccosh(x._mcpts) return UncertainFunction(mcpts) else: return np.arccosh(x)	[ "def", "acosh", "(", "x", ")", ":", "if", "isinstance", "(", "x", ",", "UncertainFunction", ")", ":", "mcpts", "=", "np", ".", "arccosh", "(", "x", ".", "_mcpts", ")", "return", "UncertainFunction", "(", "mcpts", ")", "else", ":", "return", "np", "."...	23.111111	9.555556
def consecutive_groups(iterable, ordering=lambda x: x): """Yield groups of consecutive items using :func:`itertools.groupby`. The ordering function determines whether two items are adjacent by returning their position. By default, the ordering function is the identity function. This is suitable f...	[ "def", "consecutive_groups", "(", "iterable", ",", "ordering", "=", "lambda", "x", ":", "x", ")", ":", "for", "k", ",", "g", "in", "groupby", "(", "enumerate", "(", "iterable", ")", ",", "key", "=", "lambda", "x", ":", "x", "[", "0", "]", "-", "o...	32.171429	19.771429
def upload_index_file(self, test_address, timestamp): """ Create an index.html file with links to all the log files that were just uploaded. """ global already_uploaded_files already_uploaded_files = list(set(already_uploaded_files)) already_uploaded_files.sort() file...	[ "def", "upload_index_file", "(", "self", ",", "test_address", ",", "timestamp", ")", ":", "global", "already_uploaded_files", "already_uploaded_files", "=", "list", "(", "set", "(", "already_uploaded_files", ")", ")", "already_uploaded_files", ".", "sort", "(", ")",...	48.529412	12
def toURLEncoded(self): """Generate an x-www-urlencoded string""" args = self.toPostArgs().items() args.sort() return urllib.urlencode(args)	[ "def", "toURLEncoded", "(", "self", ")", ":", "args", "=", "self", ".", "toPostArgs", "(", ")", ".", "items", "(", ")", "args", ".", "sort", "(", ")", "return", "urllib", ".", "urlencode", "(", "args", ")" ]	33.6	8.2
def _publish_grade(self, score, only_if_higher=None): """ Publish a grade to the runtime. """ grade_dict = { 'value': score.raw_earned, 'max_value': score.raw_possible, 'only_if_higher': only_if_higher, } self.runtime.publish(self, 'gra...	[ "def", "_publish_grade", "(", "self", ",", "score", ",", "only_if_higher", "=", "None", ")", ":", "grade_dict", "=", "{", "'value'", ":", "score", ".", "raw_earned", ",", "'max_value'", ":", "score", ".", "raw_possible", ",", "'only_if_higher'", ":", "only_i...	32.7	8.9
def get_sdc_by_id(self, id): """ Get ScaleIO SDC object by its id :param name: id of SDC :return: ScaleIO SDC object :raise KeyError: No SDC with specified id found :rtype: SDC object """ for sdc in self.sdc: if sdc.id == id: re...	[ "def", "get_sdc_by_id", "(", "self", ",", "id", ")", ":", "for", "sdc", "in", "self", ".", "sdc", ":", "if", "sdc", ".", "id", "==", "id", ":", "return", "sdc", "raise", "KeyError", "(", "\"SDC with that ID not found\"", ")" ]	30.833333	8.833333
def validation_curve(train_scores, test_scores, param_range, param_name=None, semilogx=False, ax=None): """Plot a validation curve Plot a metric vs hyperpameter values for the training and test set Parameters ---------- train_scores : array-like Scores for the training...	[ "def", "validation_curve", "(", "train_scores", ",", "test_scores", ",", "param_range", ",", "param_name", "=", "None", ",", "semilogx", "=", "False", ",", "ax", "=", "None", ")", ":", "if", "ax", "is", "None", ":", "ax", "=", "plt", ".", "gca", "(", ...	28.129032	23.33871
def _set_addr(self, addr): """private helper method""" if self._addr != addr: ioctl(self._fd, SMBUS.I2C_SLAVE, addr) self._addr = addr	[ "def", "_set_addr", "(", "self", ",", "addr", ")", ":", "if", "self", ".", "_addr", "!=", "addr", ":", "ioctl", "(", "self", ".", "_fd", ",", "SMBUS", ".", "I2C_SLAVE", ",", "addr", ")", "self", ".", "_addr", "=", "addr" ]	34	9
def add_roles(self, databaseName, roleNames, collectionName=None): """Add multiple roles Args: databaseName (str): Database Name roleNames (list of RoleSpecs): roles Keyword Args: collectionName (str): Collection Raises: ...	[ "def", "add_roles", "(", "self", ",", "databaseName", ",", "roleNames", ",", "collectionName", "=", "None", ")", ":", "for", "roleName", "in", "roleNames", ":", "self", ".", "add_role", "(", "databaseName", ",", "roleName", ",", "collectionName", ")" ]	34.133333	19.333333
def generate_entropy(strength, internal_entropy, external_entropy): ''' strength - length of produced seed. One of 128, 192, 256 random - binary stream of random data from external HRNG ''' if strength not in (128, 192, 256): raise ValueError("Invalid strength") if not internal_entropy:...	[ "def", "generate_entropy", "(", "strength", ",", "internal_entropy", ",", "external_entropy", ")", ":", "if", "strength", "not", "in", "(", "128", ",", "192", ",", "256", ")", ":", "raise", "ValueError", "(", "\"Invalid strength\"", ")", "if", "not", "intern...	32.555556	21.888889
def deconstruct(self): """Deconstruction for migrations. Return a simpler object (_SerializedWorkflow), since our Workflows are rather hard to serialize: Django doesn't like deconstructing metaclass-built classes. """ name, path, args, kwargs = super(StateField, self).de...	[ "def", "deconstruct", "(", "self", ")", ":", "name", ",", "path", ",", "args", ",", "kwargs", "=", "super", "(", "StateField", ",", "self", ")", ".", "deconstruct", "(", ")", "# We want to display the proper class name, which isn't available", "# at the same point f...	40.541667	20.875
def _getModules(self): """ Import and load application modules. :return: <dict> """ modules = {} modulesPath = os.path.join("application", "module") moduleList = os.listdir(modulesPath) for moduleName in moduleList: modulePath = os.path.join(...	[ "def", "_getModules", "(", "self", ")", ":", "modules", "=", "{", "}", "modulesPath", "=", "os", ".", "path", ".", "join", "(", "\"application\"", ",", "\"module\"", ")", "moduleList", "=", "os", ".", "listdir", "(", "modulesPath", ")", "for", "moduleNam...	30	18
def verify_password(self, password, password_hash): """Verify plaintext ``password`` against ``hashed password``. Args: password(str): Plaintext password that the user types in. password_hash(str): Password hash generated by a previous call to ``hash_password()``. Return...	[ "def", "verify_password", "(", "self", ",", "password", ",", "password_hash", ")", ":", "# Print deprecation warning if called with (password, user) instead of (password, user.password)", "if", "isinstance", "(", "password_hash", ",", "self", ".", "user_manager", ".", "db_man...	46.344828	29.586207
def line_content_counts_as_uncovered_manual(content: str) -> bool: """ Args: content: A line with indentation and tail comments/space removed. Returns: Whether the line could be included in the coverage report. """ # Omit empty lines. if not content: return False # ...	[ "def", "line_content_counts_as_uncovered_manual", "(", "content", ":", "str", ")", "->", "bool", ":", "# Omit empty lines.", "if", "not", "content", ":", "return", "False", "# Omit declarations.", "for", "keyword", "in", "[", "'def'", ",", "'class'", "]", ":", "...	27.684211	22.526316
def _viewEntryNumber(self, ientry, select=True): """views entry #ientry. Also selects entry in listview if select=True""" # pass entry to viewer dialog self._viewing_ientry = ientry entry = self.purrer.entries[ientry] busy = BusyIndicator() self.view_entry_dialog.viewEntr...	[ "def", "_viewEntryNumber", "(", "self", ",", "ientry", ",", "select", "=", "True", ")", ":", "# pass entry to viewer dialog", "self", ".", "_viewing_ientry", "=", "ientry", "entry", "=", "self", ".", "purrer", ".", "entries", "[", "ientry", "]", "busy", "=",...	52.428571	16.714286
def main(options): """Spline loc tool.""" application = Application(options) # fails application when your defined threshold is higher than your ratio of com/loc. if not application.run(): sys.exit(1) return application	[ "def", "main", "(", "", "", "options", ")", ":", "application", "=", "Application", "(", "", "", "options", ")", "# fails application when your defined threshold is higher than your ratio of com/loc.", "if", "not", "application", ".", "run", "(", ")", ":", "sys"...	35	17
def baseline_or_audit(self, allow_deletion=False, audit_only=False): """Baseline synchonization or audit. Both functions implemented in this routine because audit is a prerequisite for a baseline sync. In the case of baseline sync the last timestamp seen is recorded as client state. ...	[ "def", "baseline_or_audit", "(", "self", ",", "allow_deletion", "=", "False", ",", "audit_only", "=", "False", ")", ":", "action", "=", "(", "'audit'", "if", "(", "audit_only", ")", "else", "'baseline sync'", ")", "self", ".", "logger", ".", "debug", "(", ...	50.313953	18.534884
def _utc_to_local(self, data, local_zone="America/Los_Angeles"): """ Adjust index of dataframe according to timezone that is requested by user. Parameters ---------- data : pd.DataFrame() Pandas dataframe of json timeseries response from server. local_zone :...	[ "def", "_utc_to_local", "(", "self", ",", "data", ",", "local_zone", "=", "\"America/Los_Angeles\"", ")", ":", "# Accounts for localtime shift", "data", ".", "index", "=", "data", ".", "index", ".", "tz_localize", "(", "pytz", ".", "utc", ")", ".", "tz_convert...	33.416667	24.875
def ParseMany(text): """Parses many YAML documents into a list of Python objects. Args: text: A YAML source with multiple documents embedded. Returns: A list of Python data structures corresponding to the YAML documents. """ precondition.AssertType(text, Text) if compatibility.PY2: text = tex...	[ "def", "ParseMany", "(", "text", ")", ":", "precondition", ".", "AssertType", "(", "text", ",", "Text", ")", "if", "compatibility", ".", "PY2", ":", "text", "=", "text", ".", "encode", "(", "\"utf-8\"", ")", "return", "list", "(", "yaml", ".", "safe_lo...	24.266667	21.533333
def _getParameters(self): """Returns the result of this decorator.""" param = self.query._getParameters() key = self.__PATTERN_KEY % (str(self._getIndex())) val = self.__PATTERN_VALUE % (self.__column, self.__value) #self.__column.getColumnAlias() param.update({key:val}) ...	[ "def", "_getParameters", "(", "self", ")", ":", "param", "=", "self", ".", "query", ".", "_getParameters", "(", ")", "key", "=", "self", ".", "__PATTERN_KEY", "%", "(", "str", "(", "self", ".", "_getIndex", "(", ")", ")", ")", "val", "=", "self", "...	41.625	11.5
def fetch_csv_dataframe( download_url, filename=None, subdir=None, **pandas_kwargs): """ Download a remote file from `download_url` and save it locally as `filename`. Load that local file as a CSV into Pandas using extra keyword arguments such as sep='\t'. """ path = ...	[ "def", "fetch_csv_dataframe", "(", "download_url", ",", "filename", "=", "None", ",", "subdir", "=", "None", ",", "", "", "pandas_kwargs", ")", ":", "path", "=", "fetch_file", "(", "download_url", "=", "download_url", ",", "filename", "=", "filename", ",",...	31.533333	17.266667
def get_composition_query_session_for_repository(self, repository_id, proxy): """Gets a composition query session for the given repository. arg: repository_id (osid.id.Id): the Id of the repository arg proxy (osid.proxy.Proxy): a proxy return: (osid.repository.CompositionQuerySes...	[ "def", "get_composition_query_session_for_repository", "(", "self", ",", "repository_id", ",", "proxy", ")", ":", "if", "repository_id", "is", "None", ":", "raise", "NullArgument", "(", ")", "if", "not", "self", ".", "supports_composition_query", "(", ")", ":", ...	42.903226	16.451613
def get(self, request, **kwargs): """ Return the customer's valid subscriptions. Returns with status code 200. """ customer, _created = Customer.get_or_create( subscriber=subscriber_request_callback(self.request) ) serializer = SubscriptionSerializer(customer.subscription) return Response(serialize...	[ "def", "get", "(", "self", ",", "request", ",", "", "", "kwargs", ")", ":", "customer", ",", "_created", "=", "Customer", ".", "get_or_create", "(", "subscriber", "=", "subscriber_request_callback", "(", "self", ".", "request", ")", ")", "serializer", "=...	26.333333	15.333333
def relpath(self): """ Determine the relative path to this repository Returns: str: relative path to this repository """ here = os.path.abspath(os.path.curdir) relpath = os.path.relpath(self.fpath, here) return relpath	[ "def", "relpath", "(", "self", ")", ":", "here", "=", "os", ".", "path", ".", "abspath", "(", "os", ".", "path", ".", "curdir", ")", "relpath", "=", "os", ".", "path", ".", "relpath", "(", "self", ".", "fpath", ",", "here", ")", "return", "relpat...	27.8	14.4
def update_widget_attrs(self, bound_field, attrs): """ Update the dictionary of attributes used while rendering the input widget """ bound_field.form.update_widget_attrs(bound_field, attrs) widget_classes = self.widget.attrs.get('class', None) if widget_classes: ...	[ "def", "update_widget_attrs", "(", "self", ",", "bound_field", ",", "attrs", ")", ":", "bound_field", ".", "form", ".", "update_widget_attrs", "(", "bound_field", ",", "attrs", ")", "widget_classes", "=", "self", ".", "widget", ".", "attrs", ".", "get", "(",...	40.25	15.916667
def read_interactions(path, comments="#", directed=False, delimiter=None, nodetype=None, timestamptype=None, encoding='utf-8', keys=False): """Read a DyNetx graph from interaction list format. Parameters ---------- path : basestring The desired output filenam...	[ "def", "read_interactions", "(", "path", ",", "comments", "=", "\"#\"", ",", "directed", "=", "False", ",", "delimiter", "=", "None", ",", "nodetype", "=", "None", ",", "timestamptype", "=", "None", ",", "encoding", "=", "'utf-8'", ",", "keys", "=", "Fal...	34.190476	27.095238
def over(self, window): """ Define a windowing column. :param window: a :class:`WindowSpec` :return: a Column >>> from pyspark.sql import Window >>> window = Window.partitionBy("name").orderBy("age").rowsBetween(-1, 1) >>> from pyspark.sql.functions import rank,...	[ "def", "over", "(", "self", ",", "window", ")", ":", "from", "pyspark", ".", "sql", ".", "window", "import", "WindowSpec", "if", "not", "isinstance", "(", "window", ",", "WindowSpec", ")", ":", "raise", "TypeError", "(", "\"window should be WindowSpec\"", ")...	36.117647	15.176471
def next_flightmode_colour(self): '''allocate a colour to be used for a flight mode''' if self.flightmode_colour_index > len(flightmode_colours): print("Out of colours; reusing") self.flightmode_colour_index = 0 ret = flightmode_colours[self.flightmode_colour_index] ...	[ "def", "next_flightmode_colour", "(", "self", ")", ":", "if", "self", ".", "flightmode_colour_index", ">", "len", "(", "flightmode_colours", ")", ":", "print", "(", "\"Out of colours; reusing\"", ")", "self", ".", "flightmode_colour_index", "=", "0", "ret", "=", ...	46	13.25
def qteMakeWidgetActive(self, widgetObj: QtGui.QWidget): """ Give keyboard focus to ``widgetObj``. If ``widgetObj`` is None then the internal focus state is reset, but the focus manger will automatically activate the first available widget again. \|Args\| * `...	[ "def", "qteMakeWidgetActive", "(", "self", ",", "widgetObj", ":", "QtGui", ".", "QWidget", ")", ":", "# Void the active widget information.", "if", "widgetObj", "is", "None", ":", "self", ".", "_qteActiveWidget", "=", "None", "return", "# Ensure that this applet is an...	33.775862	21.017241
def get_or_create_iobject(identifier_uid, identifier_namespace_uri, iobject_type_name, iobject_type_namespace_uri, iobject_type_revision_name, iobject_family_name, ...	[ "def", "get_or_create_iobject", "(", "identifier_uid", ",", "identifier_namespace_uri", ",", "iobject_type_name", ",", "iobject_type_namespace_uri", ",", "iobject_type_revision_name", ",", "iobject_family_name", ",", "iobject_family_revision_name", "=", "\"\"", ",", "identifier...	48.246914	31.45679
def text(self, text, stylename=None): """Add text within the current container.""" assert self._containers container = self._containers[-1] if stylename is not None: stylename = self._get_style_name(stylename) container.addElement(Span(stylename=stylename, text=te...	[ "def", "text", "(", "self", ",", "text", ",", "stylename", "=", "None", ")", ":", "assert", "self", ".", "_containers", "container", "=", "self", ".", "_containers", "[", "-", "1", "]", "if", "stylename", "is", "not", "None", ":", "stylename", "=", "...	42.222222	11.111111
def action(self, observations): """ Calculate value for given state """ observations = self.input_block(observations) policy_hidden = self.policy_backbone(observations) action = self.action_head(policy_hidden) return action	[ "def", "action", "(", "self", ",", "observations", ")", ":", "observations", "=", "self", ".", "input_block", "(", "observations", ")", "policy_hidden", "=", "self", ".", "policy_backbone", "(", "observations", ")", "action", "=", "self", ".", "action_head", ...	43	11.166667
def guess_mime_type(url): """Use the mimetypes module to lookup the type for an extension. This function also adds some extensions required for HTML5 """ (mimetype, _mimeencoding) = mimetypes.guess_type(url) if not mimetype: ext = os.path.splitext(url)[1] mimetype = _MIME_TYPES.get(...	[ "def", "guess_mime_type", "(", "url", ")", ":", "(", "mimetype", ",", "_mimeencoding", ")", "=", "mimetypes", ".", "guess_type", "(", "url", ")", "if", "not", "mimetype", ":", "ext", "=", "os", ".", "path", ".", "splitext", "(", "url", ")", "[", "1",...	35.615385	14.307692
def expose_ideal_query_execution_start_points(compound_match_query, location_types, coerced_locations): """Ensure that OrientDB only considers desirable query start points in query planning.""" new_queries = [] for match_query in compound_match_query.match_quer...	[ "def", "expose_ideal_query_execution_start_points", "(", "compound_match_query", ",", "location_types", ",", "coerced_locations", ")", ":", "new_queries", "=", "[", "]", "for", "match_query", "in", "compound_match_query", ".", "match_queries", ":", "location_classification"...	59.09375	31.625
def __build_url(self, api_call, **kwargs): """Builds the api query""" kwargs['key'] = self.api_key if 'language' not in kwargs: kwargs['language'] = self.language if 'format' not in kwargs: kwargs['format'] = self.__format api_query = urlencode(kwargs) ...	[ "def", "__build_url", "(", "self", ",", "api_call", ",", "", "", "kwargs", ")", ":", "kwargs", "[", "'key'", "]", "=", "self", ".", "api_key", "if", "'language'", "not", "in", "kwargs", ":", "kwargs", "[", "'language'", "]", "=", "self", ".", "lang...	37.25	7.25
def plot(self, figure_list): ''' When each subscript is called, uses its standard plotting Args: figure_list: list of figures passed from the guit ''' #TODO: be smarter about how we plot ScriptIterator if self._current_subscript_stage is not None: ...	[ "def", "plot", "(", "self", ",", "figure_list", ")", ":", "#TODO: be smarter about how we plot ScriptIterator", "if", "self", ".", "_current_subscript_stage", "is", "not", "None", ":", "if", "self", ".", "_current_subscript_stage", "[", "'current_subscript'", "]", "is...	44.606061	34.242424
def dmi(arg, n, high_col='high', low_col='low', close_col='close'): """ Return the dmi+, dmi-, Average directional index ( http://en.wikipedia.org/wiki/Average_Directional_Index ) TODO - break up calcuat """ converted = arg[[close_col, high_col, low_col]] converted.columns = ['close', 'high'...	[ "def", "dmi", "(", "arg", ",", "n", ",", "high_col", "=", "'high'", ",", "low_col", "=", "'low'", ",", "close_col", "=", "'close'", ")", ":", "converted", "=", "arg", "[", "[", "close_col", ",", "high_col", ",", "low_col", "]", "]", "converted", ".",...	31.5	16.678571
def lines(self, encoding=None, errors='strict', retain=True): r""" Open this file, read all lines, return them in a list. Optional arguments: `encoding` - The Unicode encoding (or character set) of the file. The default is ``None``, meaning the content of th...	[ "def", "lines", "(", "self", ",", "encoding", "=", "None", ",", "errors", "=", "'strict'", ",", "retain", "=", "True", ")", ":", "return", "self", ".", "text", "(", "encoding", ",", "errors", ")", ".", "splitlines", "(", "retain", ")" ]	51.833333	23.055556
def must_stop(self): """ Return True if the worker must stop when the current loop is over. """ return bool(self.terminate_gracefuly and self.end_signal_caught or self.num_loops >= self.max_loops or self.end_forced or self.wanted_end_date and datetime.ut...	[ "def", "must_stop", "(", "self", ")", ":", "return", "bool", "(", "self", ".", "terminate_gracefuly", "and", "self", ".", "end_signal_caught", "or", "self", ".", "num_loops", ">=", "self", ".", "max_loops", "or", "self", ".", "end_forced", "or", "self", "....	49.285714	23.285714
def tail(f, window=20): """ Returns the last `window` lines of file `f` as a list. @param window: the number of lines. """ if window == 0: return [] BUFSIZ = 1024 f.seek(0, 2) bytes = f.tell() size = window + 1 block = -1 data = [] while size > 0 and bytes > 0: ...	[ "def", "tail", "(", "f", ",", "window", "=", "20", ")", ":", "if", "window", "==", "0", ":", "return", "[", "]", "BUFSIZ", "=", "1024", "f", ".", "seek", "(", "0", ",", "2", ")", "bytes", "=", "f", ".", "tell", "(", ")", "size", "=", "windo...	28.833333	15.9
def getDevicesById(self): # , query): """ rows = self.camera_collection.get(query) devices_by_id = {} for row in rows: row.pop("classname") device = DataModel.RTSPCameraDevice(**row) devices_by_id[device._id] = device return devices_by_id ...	[ "def", "getDevicesById", "(", "self", ")", ":", "# , query):", "rows", "=", "self", ".", "camera_collection", ".", "get", "(", ")", "devices_by_id", "=", "{", "}", "for", "row", "in", "rows", ":", "classname", "=", "row", ".", "pop", "(", "\"classname\""...	35.130435	10.26087
def declare(full_table_name, definition, context): """ Parse declaration and create new SQL table accordingly. :param full_table_name: full name of the table :param definition: DataJoint table definition :param context: dictionary of objects that might be referred to in the table. """ tabl...	[ "def", "declare", "(", "full_table_name", ",", "definition", ",", "context", ")", ":", "table_name", "=", "full_table_name", ".", "strip", "(", "'`'", ")", ".", "split", "(", "'.'", ")", "[", "1", "]", "if", "len", "(", "table_name", ")", ">", "MAX_TAB...	42.5	20.092593
def intersects_first(self, ray_origins, ray_directions): """ Find the index of the first triangle a ray hits. Parameters ---------- ray_origins: (n,3) float, origins of rays ray_directions: (n,3) float, direction (vec...	[ "def", "intersects_first", "(", "self", ",", "ray_origins", ",", "ray_directions", ")", ":", "ray_origins", "=", "np", ".", "asanyarray", "(", "deepcopy", "(", "ray_origins", ")", ")", "ray_directions", "=", "np", ".", "asanyarray", "(", "ray_directions", ")",...	30.130435	20.391304
def send_event(self, event_type, category=None, dimensions=None, properties=None, timestamp=None): """Send an event to SignalFx. Args: event_type (string): the event type (name of the event time series). category (string): the category of the e...	[ "def", "send_event", "(", "self", ",", "event_type", ",", "category", "=", "None", ",", "dimensions", "=", "None", ",", "properties", "=", "None", ",", "timestamp", "=", "None", ")", ":", "if", "category", "and", "category", "not", "in", "SUPPORTED_EVENT_C...	43.033333	19.766667
def _assemble_and_send_request(self): """ Fires off the Fedex request. @warning: NEVER CALL THIS METHOD DIRECTLY. CALL send_request(), WHICH RESIDES ON FedexBaseService AND IS INHERITED. """ # Fire off the query. return self.client.service.getPickupAvailabil...	[ "def", "_assemble_and_send_request", "(", "self", ")", ":", "# Fire off the query.", "return", "self", ".", "client", ".", "service", ".", "getPickupAvailability", "(", "WebAuthenticationDetail", "=", "self", ".", "WebAuthenticationDetail", ",", "ClientDetail", "=", "...	40.153846	13.153846
def exit_config_mode(self, exit_config="exit all", pattern="#"): """Exit from configuration mode.""" return super(RadETXBase, self).exit_config_mode( exit_config=exit_config, pattern=pattern )	[ "def", "exit_config_mode", "(", "self", ",", "exit_config", "=", "\"exit all\"", ",", "pattern", "=", "\"#\"", ")", ":", "return", "super", "(", "RadETXBase", ",", "self", ")", ".", "exit_config_mode", "(", "exit_config", "=", "exit_config", ",", "pattern", ...	44.8	16.6
def remove(path, follow_symlink=False): """ Implements an remove function that will delete files, folder trees and symlink trees 1.) Remove a file 2.) Remove a symlink and follow into with a recursive rm if follow_symlink 3.) Remove directory with rmtree Args: path (str): path to remov...	[ "def", "remove", "(", "path", ",", "follow_symlink", "=", "False", ")", ":", "if", "os", ".", "path", ".", "isfile", "(", "path", ")", ":", "os", ".", "remove", "(", "path", ")", "elif", "os", ".", "path", ".", "islink", "(", "path", ")", ":", ...	29.95	19.05
def handle(self): """ Executes the command. """ creator = MigrationCreator() name = self.argument("name") table = self.option("table") create = bool(self.option("create")) if not table and create is not False: table = create path = s...	[ "def", "handle", "(", "self", ")", ":", "creator", "=", "MigrationCreator", "(", ")", "name", "=", "self", ".", "argument", "(", "\"name\"", ")", "table", "=", "self", ".", "option", "(", "\"table\"", ")", "create", "=", "bool", "(", "self", ".", "op...	27.7	18.8
def _raw_hex_id(obj): """Return the padded hexadecimal id of ``obj``.""" # interpret as a pointer since that's what really what id returns packed = struct.pack('@P', id(obj)) return ''.join(map(_replacer, packed))	[ "def", "_raw_hex_id", "(", "obj", ")", ":", "# interpret as a pointer since that's what really what id returns", "packed", "=", "struct", ".", "pack", "(", "'@P'", ",", "id", "(", "obj", ")", ")", "return", "''", ".", "join", "(", "map", "(", "_replacer", ",",...	45	10.2
def get_values(self, args, *kwargs): """ Convenience method that for simple single tag queries will return just the values to be iterated on. """ if isinstance(args[0], list): raise ValueError("Can only get_values() for a single tag.") response = self.get_d...	[ "def", "get_values", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "if", "isinstance", "(", "args", "[", "0", "]", ",", "list", ")", ":", "raise", "ValueError", "(", "\"Can only get_values() for a single tag.\"", ")", "response", "=", ...	40.615385	15.692308
def tag_and_push_image(self, image, target_image, insecure=False, force=False, dockercfg=None): """ tag provided image and push it to registry :param image: str or ImageName, image id or name :param target_image: ImageName, img :param insecure: bool, a...	[ "def", "tag_and_push_image", "(", "self", ",", "image", ",", "target_image", ",", "insecure", "=", "False", ",", "force", "=", "False", ",", "dockercfg", "=", "None", ")", ":", "logger", ".", "info", "(", "\"tagging and pushing image '%s' as '%s'\"", ",", "ima...	49.111111	18.888889
def _trigger_event(self, event, args, kwargs): """Invoke an event handler.""" run_async = kwargs.pop('run_async', False) if event in self.handlers: if run_async: return self.start_background_task(self.handlers[event], args) else: try: ...	[ "def", "_trigger_event", "(", "self", ",", "event", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "run_async", "=", "kwargs", ".", "pop", "(", "'run_async'", ",", "False", ")", "if", "event", "in", "self", ".", "handlers", ":", "if", "run_asyn...	41.363636	16.272727
def mark(self, channel, ts): """ https://api.slack.com/methods/im.mark """ self.params.update({ 'channel': channel, 'ts': ts, }) return FromUrl('https://slack.com/api/im.mark', self._requests)(data=self.params).post()	[ "def", "mark", "(", "self", ",", "channel", ",", "ts", ")", ":", "self", ".", "params", ".", "update", "(", "{", "'channel'", ":", "channel", ",", "'ts'", ":", "ts", ",", "}", ")", "return", "FromUrl", "(", "'https://slack.com/api/im.mark'", ",", "self...	35.375	16.125
def _seconds_as_string(seconds): """ Returns seconds as a human-friendly string, e.g. '1d 4h 47m 41s' """ TIME_UNITS = [('s', 60), ('m', 60), ('h', 24), ('d', None)] unit_strings = [] cur = max(int(seconds), 1) for suffix, size in TIME_UNITS: if size is not None: cur, res...	[ "def", "_seconds_as_string", "(", "seconds", ")", ":", "TIME_UNITS", "=", "[", "(", "'s'", ",", "60", ")", ",", "(", "'m'", ",", "60", ")", ",", "(", "'h'", ",", "24", ")", ",", "(", "'d'", ",", "None", ")", "]", "unit_strings", "=", "[", "]", ...	31.933333	13.133333
def channels(self): """channel count or 0 for unknown""" # from ProgramConfigElement() if hasattr(self, "pce_channels"): return self.pce_channels conf = getattr( self, "extensionChannelConfiguration", self.channelConfiguration) if conf == 1: ...	[ "def", "channels", "(", "self", ")", ":", "# from ProgramConfigElement()", "if", "hasattr", "(", "self", ",", "\"pce_channels\"", ")", ":", "return", "self", ".", "pce_channels", "conf", "=", "getattr", "(", "self", ",", "\"extensionChannelConfiguration\"", ",", ...	25.608696	17.956522
def download_data(cdbs_root, verbose=True, dry_run=False): """Download CDBS data files to given root directory. Download is skipped if a data file already exists. Parameters ---------- cdbs_root : str Root directory for CDBS data files. verbose : bool Print extra information to...	[ "def", "download_data", "(", "cdbs_root", ",", "verbose", "=", "True", ",", "dry_run", "=", "False", ")", ":", "from", ".", "config", "import", "conf", "# Avoid potential circular import", "if", "not", "os", ".", "path", ".", "exists", "(", "cdbs_root", ")",...	28.829268	19.231707
def DFS_Tree(G): """ Return an oriented tree constructed from dfs. """ if not G.vertices: raise GraphInsertError("This graph have no vertices.") pred = {} T = digraph.DiGraph() vertex_data = DFS(G) for vertex in vertex_data: pred[vertex] = vertex_data[vertex][0]...	[ "def", "DFS_Tree", "(", "G", ")", ":", "if", "not", "G", ".", "vertices", ":", "raise", "GraphInsertError", "(", "\"This graph have no vertices.\"", ")", "pred", "=", "{", "}", "T", "=", "digraph", ".", "DiGraph", "(", ")", "vertex_data", "=", "DFS", "("...	29.045455	12.136364
def run_command_orig(cmd): """ No idea how th f to get this to work """ process = subprocess.Popen(cmd, shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE) stdout, stderr = process.communicate() if process.returncode == 0: os.killpg(os.getpgid(pro.pid), signal.SIGTERM) else: ...	[ "def", "run_command_orig", "(", "cmd", ")", ":", "process", "=", "subprocess", ".", "Popen", "(", "cmd", ",", "shell", "=", "True", ",", "stdout", "=", "subprocess", ".", "PIPE", ",", "stderr", "=", "subprocess", ".", "PIPE", ")", "stdout", ",", "stder...	47	23.222222
def new(cls, user, provider, federated_id): """ Create a new login :param user: AuthUser :param provider: str - ie: facebook, twitter, ... :param federated_id: str - an id associated to provider :return: """ if cls.get_user(provider, federated_id): ...	[ "def", "new", "(", "cls", ",", "user", ",", "provider", ",", "federated_id", ")", ":", "if", "cls", ".", "get_user", "(", "provider", ",", "federated_id", ")", ":", "raise", "exceptions", ".", "AuthError", "(", "\"Federation already\"", ")", "return", "cls...	35.857143	12.714286
def _parse_recipients(self, to): """Make sure we have a "," separated list of recipients :param to: Recipient(s) :type to: (str, list, :class:`pyfilemail.Contact`, :class:`pyfilemail.Group` ) :rtype: ``str`` ...	[ "def", "_parse_recipients", "(", "self", ",", "to", ")", ":", "if", "to", "is", "None", ":", "return", "None", "if", "isinstance", "(", "to", ",", "list", ")", ":", "recipients", "=", "[", "]", "for", "recipient", "in", "to", ":", "if", "isinstance",...	26.702703	18.972973
def goassoc_fieldmap(relationship_type=ACTS_UPSTREAM_OF_OR_WITHIN): """ Returns a mapping of canonical monarch fields to amigo-golr. See: https://github.com/geneontology/amigo/blob/master/metadata/ann-config.yaml """ return { M.SUBJECT: 'bioentity', M.SUBJECT_CLOSURE: 'bioentity', ...	[ "def", "goassoc_fieldmap", "(", "relationship_type", "=", "ACTS_UPSTREAM_OF_OR_WITHIN", ")", ":", "return", "{", "M", ".", "SUBJECT", ":", "'bioentity'", ",", "M", ".", "SUBJECT_CLOSURE", ":", "'bioentity'", ",", "## In the GO AmiGO instance, the type field is not correct...	42.413793	17.862069
def bindata(df, delta=1.0, method="average"): """ Bin average the index (usually pressure) to a given interval (default delta = 1). """ start = np.floor(df.index[0]) stop = np.ceil(df.index[-1]) new_index = np.arange(start, stop, delta) binned = pd.cut(df.index, bins=new_index) if m...	[ "def", "bindata", "(", "df", ",", "delta", "=", "1.0", ",", "method", "=", "\"average\"", ")", ":", "start", "=", "np", ".", "floor", "(", "df", ".", "index", "[", "0", "]", ")", "stop", "=", "np", ".", "ceil", "(", "df", ".", "index", "[", "...	31.545455	16.363636
def recall(ntp, nfn): ''' This calculates recall. https://en.wikipedia.org/wiki/Precision_and_recall Parameters ---------- ntp : int The number of true positives. nfn : int The number of false negatives. Returns ------- float The precision calculated...	[ "def", "recall", "(", "ntp", ",", "nfn", ")", ":", "if", "(", "ntp", "+", "nfn", ")", ">", "0", ":", "return", "ntp", "/", "(", "ntp", "+", "nfn", ")", "else", ":", "return", "np", ".", "nan" ]	15.259259	27.037037
def add(self, resource): """Add a resource to the context""" if isinstance(resource, Resource): if isinstance(resource, Secret) and \ resource.mount != 'cubbyhole': ensure_backend(resource, SecretBackend, ...	[ "def", "add", "(", "self", ",", "resource", ")", ":", "if", "isinstance", "(", "resource", ",", "Resource", ")", ":", "if", "isinstance", "(", "resource", ",", "Secret", ")", "and", "resource", ".", "mount", "!=", "'cubbyhole'", ":", "ensure_backend", "(...	44.545455	12.227273
def fix_e305(self, result): """Add missing 2 blank lines after end of function or class.""" cr = '\n' # check comment line offset = result['line'] - 2 while True: if offset < 0: break line = self.source[offset].lstrip() if len(l...	[ "def", "fix_e305", "(", "self", ",", "result", ")", ":", "cr", "=", "'\\n'", "# check comment line", "offset", "=", "result", "[", "'line'", "]", "-", "2", "while", "True", ":", "if", "offset", "<", "0", ":", "break", "line", "=", "self", ".", "sourc...	30.5625	14
def query_recent(num=8, **kwargs): ''' query recent posts. ''' order_by_create = kwargs.get('order_by_create', False) kind = kwargs.get('kind', None) if order_by_create: if kind: recent_recs = TabPost.select().where( (TabPos...	[ "def", "query_recent", "(", "num", "=", "8", ",", "", "", "kwargs", ")", ":", "order_by_create", "=", "kwargs", ".", "get", "(", "'order_by_create'", ",", "False", ")", "kind", "=", "kwargs", ".", "get", "(", "'kind'", ",", "None", ")", "if", "orde...	34.727273	14.242424
def upsert_and_fetch(coll, doc, **kwargs): """ Fetch exactly one matching document or upsert the document if not found, returning the matching or upserted document. See https://jira.mongodb.org/browse/SERVER-28434 describing the condition where MongoDB is uninterested in providing an upsert...	[ "def", "upsert_and_fetch", "(", "coll", ",", "doc", ",", "", "", "kwargs", ")", ":", "return", "coll", ".", "find_one_and_update", "(", "doc", ",", "{", "\"$setOnInsert\"", ":", "doc", "}", ",", "upsert", "=", "True", ",", "return_document", "=", "pymo...	30.653846	16.269231
def setCompleteRedYellowGreenDefinition(self, tlsID, tls): """setCompleteRedYellowGreenDefinition(string, ) -> None . """ length = 1 + 4 + 1 + 4 + \ len(tls._subID) + 1 + 4 + 1 + 4 + 1 + 4 + 1 + 4 # tls parameter itemNo = 1 + 1 + 1 + 1 + 1 for p in tls._phas...	[ "def", "setCompleteRedYellowGreenDefinition", "(", "self", ",", "tlsID", ",", "tls", ")", ":", "length", "=", "1", "+", "4", "+", "1", "+", "4", "+", "len", "(", "tls", ".", "_subID", ")", "+", "1", "+", "4", "+", "1", "+", "4", "+", "1", "+", ...	47.9375	23.28125
def query_flag(ifo, name, start_time, end_time, source='any', server="segments.ligo.org", veto_definer=None, cache=False): """Return the times where the flag is active Parameters ---------- ifo: string The interferometer to query (H1, L1). name: string ...	[ "def", "query_flag", "(", "ifo", ",", "name", ",", "start_time", ",", "end_time", ",", "source", "=", "'any'", ",", "server", "=", "\"segments.ligo.org\"", ",", "veto_definer", "=", "None", ",", "cache", "=", "False", ")", ":", "info", "=", "name", ".", ...	38.055118	20.582677
def update_records(self, headers, zoneID, updateRecords): """Update DNS records.""" IP = requests.get(self.GET_EXT_IP_URL).text message = True errorsRecords = [] sucessRecords = [] for record in updateRecords: updateEndpoint = '/' + zoneID + '/dns_records/' + ...	[ "def", "update_records", "(", "self", ",", "headers", ",", "zoneID", ",", "updateRecords", ")", ":", "IP", "=", "requests", ".", "get", "(", "self", ".", "GET_EXT_IP_URL", ")", ".", "text", "message", "=", "True", "errorsRecords", "=", "[", "]", "sucessR...	41.366667	13.266667
def get_pull_request_thread(self, repository_id, pull_request_id, thread_id, project=None, iteration=None, base_iteration=None): """GetPullRequestThread. [Preview API] Retrieve a thread in a pull request. :param str repository_id: The repository ID of the pull request's target branch. :p...	[ "def", "get_pull_request_thread", "(", "self", ",", "repository_id", ",", "pull_request_id", ",", "thread_id", ",", "project", "=", "None", ",", "iteration", "=", "None", ",", "base_iteration", "=", "None", ")", ":", "route_values", "=", "{", "}", "if", "pro...	67	31.741935
def _check_superbox_for_top_levels(self, boxes): """Several boxes can only occur at the top level.""" # We are only looking at the boxes contained in a superbox, so if any # of the blacklisted boxes show up here, it's an error. TOP_LEVEL_ONLY_BOXES = set(['dtbl']) box_ids = set([...	[ "def", "_check_superbox_for_top_levels", "(", "self", ",", "boxes", ")", ":", "# We are only looking at the boxes contained in a superbox, so if any", "# of the blacklisted boxes show up here, it's an error.", "TOP_LEVEL_ONLY_BOXES", "=", "set", "(", "[", "'dtbl'", "]", ")", "box...	49.066667	16.666667
def accel_increase_transparency(self, *args): """Callback to increase transparency. """ transparency = self.settings.styleBackground.get_int('transparency') if int(transparency) - 2 > 0: self.settings.styleBackground.set_int('transparency', int(transparency) - 2) retu...	[ "def", "accel_increase_transparency", "(", "self", ",", "*", "args", ")", ":", "transparency", "=", "self", ".", "settings", ".", "styleBackground", ".", "get_int", "(", "'transparency'", ")", "if", "int", "(", "transparency", ")", "-", "2", ">", "0", ":",...	45.857143	16.142857
def start_at(self, start_at): """ Sets the start_at of this Shift. RFC 3339; shifted to location timezone + offset. Precision up to the minute is respected; seconds are truncated. :param start_at: The start_at of this Shift. :type: str """ if start_at is None: ...	[ "def", "start_at", "(", "self", ",", "start_at", ")", ":", "if", "start_at", "is", "None", ":", "raise", "ValueError", "(", "\"Invalid value for `start_at`, must not be `None`\"", ")", "if", "len", "(", "start_at", ")", "<", "1", ":", "raise", "ValueError", "(...	37.066667	25.333333
def process_phosphorylation_statements(self): """Looks for Phosphorylation events in the graph and extracts them into INDRA statements. In particular, looks for a Positive_regulation event node with a child Phosphorylation event node. If Positive_regulation has an outgoing Caus...	[ "def", "process_phosphorylation_statements", "(", "self", ")", ":", "G", "=", "self", ".", "G", "statements", "=", "[", "]", "pwcs", "=", "self", ".", "find_event_parent_with_event_child", "(", "'Positive_regulation'", ",", "'Phosphorylation'", ")", "for", "pair",...	43.066667	23.511111
def from_sec(class_, sec): """ Create a key from an sec bytestream (which is an encoding of a public pair). """ public_pair = sec_to_public_pair(sec, class_._generator) return class_(public_pair=public_pair, is_compressed=is_sec_compressed(sec))	[ "def", "from_sec", "(", "class_", ",", "sec", ")", ":", "public_pair", "=", "sec_to_public_pair", "(", "sec", ",", "class_", ".", "_generator", ")", "return", "class_", "(", "public_pair", "=", "public_pair", ",", "is_compressed", "=", "is_sec_compressed", "("...	46.666667	21
def num_neighbors(self, pores, mode='or', flatten=False): r""" Returns the number of neigbhoring pores for each given input pore Parameters ---------- pores : array_like Pores whose neighbors are to be counted flatten : boolean (optional) If ``Fa...	[ "def", "num_neighbors", "(", "self", ",", "pores", ",", "mode", "=", "'or'", ",", "flatten", "=", "False", ")", ":", "pores", "=", "self", ".", "_parse_indices", "(", "pores", ")", "# Count number of neighbors", "num", "=", "self", ".", "find_neighbor_pores"...	37.826667	25.893333
def wateryear(self): """The actual hydrological year according to the selected reference month. The reference mont reference \|Date.refmonth\| defaults to November: >>> october = Date('1996.10.01') >>> november = Date('1996.11.01') >>> october.wateryear 1996 ...	[ "def", "wateryear", "(", "self", ")", ":", "if", "self", ".", "month", "<", "self", ".", "_firstmonth_wateryear", ":", "return", "self", ".", "year", "return", "self", ".", "year", "+", "1" ]	26.724138	18.448276

def get_mfd(self, slip, area, shear_modulus=30.0): ''' Calculates activity rate on the fault :param float slip: Slip rate in mm/yr :param fault_width: Width of the fault (km) :param float disp_length_ratio: Displacement to length ratio (dime...

[ "def", "get_mfd", "(", "self", ",", "slip", ",", "area", ",", "shear_modulus", "=", "30.0", ")", ":", "# Working in Nm so convert: shear_modulus - GPa -> Nm", "# area - km ** 2. -> m ** 2.", "# slip - mm/yr -> m/yr", "moment_rate", "=", "(", "shear_modulus", "*", "1.E9",...

40.608696

19.173913

def _select_concept(self, line): """try to match a class and load it""" g = self.current['graph'] if not line: out = g.all_skos_concepts using_pattern = False else: using_pattern = True if line.isdigit(): line = int(line) ...

[ "def", "_select_concept", "(", "self", ",", "line", ")", ":", "g", "=", "self", ".", "current", "[", "'graph'", "]", "if", "not", "line", ":", "out", "=", "g", ".", "all_skos_concepts", "using_pattern", "=", "False", "else", ":", "using_pattern", "=", ...

37.538462

17.923077

def process_commenters(self): """Group comments by author.""" for index, submission in enumerate(self.submissions.values()): if submission.num_comments == 0: continue real_submission = self.reddit.submission(id=submission.id) real_submission.comment_so...

[ "def", "process_commenters", "(", "self", ")", ":", "for", "index", ",", "submission", "in", "enumerate", "(", "self", ".", "submissions", ".", "values", "(", ")", ")", ":", "if", "submission", ".", "num_comments", "==", "0", ":", "continue", "real_submiss...

40.171429

19.685714

def get_associations(self, env): """ Get all the associations for this env. Root cannot have associations, so return None for root. returns a map of hostnames to environments. """ if env.is_root: return None associations = self.associations.get_all...

[ "def", "get_associations", "(", "self", ",", "env", ")", ":", "if", "env", ".", "is_root", ":", "return", "None", "associations", "=", "self", ".", "associations", ".", "get_all", "(", ")", "return", "[", "assoc", "for", "assoc", "in", "associations", "i...

28.266667

19.066667

def b64_hmac_md5(key, data): """ return base64-encoded HMAC-MD5 for key and data, with trailing '=' stripped. """ bdigest = base64.b64encode(hmac.new(key, data, _md5).digest()).strip().decode("utf-8") return re.sub('=+$', '', bdigest)

[ "def", "b64_hmac_md5", "(", "key", ",", "data", ")", ":", "bdigest", "=", "base64", ".", "b64encode", "(", "hmac", ".", "new", "(", "key", ",", "data", ",", "_md5", ")", ".", "digest", "(", ")", ")", ".", "strip", "(", ")", ".", "decode", "(", ...

36

17.428571

def _depaginate_all(self, url): """GETs the url provided and traverses the 'next' url that's returned while storing the data in a list. Returns a single list of all items. """ items = [] for x in self._depagination_generator(url): items += x return ite...

[ "def", "_depaginate_all", "(", "self", ",", "url", ")", ":", "items", "=", "[", "]", "for", "x", "in", "self", ".", "_depagination_generator", "(", "url", ")", ":", "items", "+=", "x", "return", "items" ]

34.888889

16.111111

def get_build_metadata(key): '''get_build_metadata will return metadata about an instance from within it. :param key: the key to look up ''' headers = {"Metadata-Flavor":"Google"} url = "http://metadata.google.internal/computeMetadata/v1/instance/attributes/%s" %(key) response = requests...

[ "def", "get_build_metadata", "(", "key", ")", ":", "headers", "=", "{", "\"Metadata-Flavor\"", ":", "\"Google\"", "}", "url", "=", "\"http://metadata.google.internal/computeMetadata/v1/instance/attributes/%s\"", "%", "(", "key", ")", "response", "=", "requests", ".", ...

42.1

20.7

def list_assignment_submissions_courses(self, course_id, assignment_id, grouped=None, include=None): """ List assignment submissions. Get all existing submissions for an assignment. """ path = {} data = {} params = {} # REQUIRED - PATH - course...

[ "def", "list_assignment_submissions_courses", "(", "self", ",", "course_id", ",", "assignment_id", ",", "grouped", "=", "None", ",", "include", "=", "None", ")", ":", "path", "=", "{", "}", "data", "=", "{", "}", "params", "=", "{", "}", "# REQUIRED - PATH...

44.870968

26.903226

def path_has(self, **kwargs): """ Checks if the current path has a node spec'd by kwargs """ str_node = "/" # This node will always be "False" for key, val in kwargs.items(): if key == 'node': str_node = val if str_node in self...

[ "def", "path_has", "(", "self", ",", "*", "*", "kwargs", ")", ":", "str_node", "=", "\"/\"", "# This node will always be \"False\"", "for", "key", ",", "val", "in", "kwargs", ".", "items", "(", ")", ":", "if", "key", "==", "'node'", ":", "str_node", "=",...

42.461538

11.846154

def label_correcting_get_cycle(self, j, pred): ''' API: label_correcting_get_cycle(self, labelled, pred) Description: In label correcting check cycle it is decided pred has a cycle and nodes in the cycle are labelled. We will create a list of nodes ...

[ "def", "label_correcting_get_cycle", "(", "self", ",", "j", ",", "pred", ")", ":", "cycle", "=", "[", "]", "cycle", ".", "append", "(", "j", ")", "current", "=", "pred", "[", "j", "]", "while", "current", "!=", "j", ":", "cycle", ".", "append", "("...

38.481481

22.259259

def validate(self, reason=True): # type: (bool) -> list """Return the validation results and include an (optional) reason. If reason keyword is true, the validation is returned for each validation the [(<result: bool>, <reason:str>), ...]. If reason is False, only a single list of valid...

[ "def", "validate", "(", "self", ",", "reason", "=", "True", ")", ":", "# type: (bool) -> list", "self", ".", "_validation_results", "=", "[", "validator", ".", "is_valid", "(", "self", ".", "_value", ")", "for", "validator", "in", "getattr", "(", "self", "...

52.227273

30.272727

def uuid_to_slug(uuid): """ Return IOTile Cloud compatible Device Slug :param uuid: UUID :return: string in the form of d--0000-0000-0000-0001 """ if not isinstance(uuid, int): raise ArgumentError("Invalid id that is not an integer", id=uuid) if uuid < 0 or uuid > 0x7fffffff: ...

[ "def", "uuid_to_slug", "(", "uuid", ")", ":", "if", "not", "isinstance", "(", "uuid", ",", "int", ")", ":", "raise", "ArgumentError", "(", "\"Invalid id that is not an integer\"", ",", "id", "=", "uuid", ")", "if", "uuid", "<", "0", "or", "uuid", ">", "0...

36.4

22.933333

def edge_history(self, source, target, attribute): """ Returns a dictionary of attribute vales for each Graph in the :class:`.GraphCollection` for a single edge. Parameters ---------- source : str Identifier for source node. target : str I...

[ "def", "edge_history", "(", "self", ",", "source", ",", "target", ",", "attribute", ")", ":", "return", "{", "attr", "[", "'graph'", "]", ":", "attr", "[", "attribute", "]", "for", "i", ",", "attr", "in", "self", ".", "master_graph", ".", "edge", "["...

29.238095

19.714286

def _symlink_check(name, target, force, user, group, win_owner): ''' Check the symlink function ''' changes = {} if not os.path.exists(name) and not __salt__['file.is_link'](name): changes['new'] = name return None, 'Symlink {0} to {1} is set for creation'.format( name, t...

[ "def", "_symlink_check", "(", "name", ",", "target", ",", "force", ",", "user", ",", "group", ",", "win_owner", ")", ":", "changes", "=", "{", "}", "if", "not", "os", ".", "path", ".", "exists", "(", "name", ")", "and", "not", "__salt__", "[", "'fi...

44.411765

22.588235

def is_readable(path): ''' Check if a given path is readable by the current user. :param path: The path to check :returns: True or False ''' if os.access(path, os.F_OK) and os.access(path, os.R_OK): # The path exists and is readable return True # The path does not exist ...

[ "def", "is_readable", "(", "path", ")", ":", "if", "os", ".", "access", "(", "path", ",", "os", ".", "F_OK", ")", "and", "os", ".", "access", "(", "path", ",", "os", ".", "R_OK", ")", ":", "# The path exists and is readable", "return", "True", "# The p...

22.928571

22.785714

def rpc(_cloud_rpc_name, **params): """ 调用 LeanEngine 上的远程代码与 cloud.run 类似，但是允许传入 leancloud.Object 作为参数，也允许传入 leancloud.Object 作为结果 :param name: 需要调用的远程 Cloud Code 的名称 :type name: basestring :param params: 调用参数 :return: 调用结果 """ encoded_params = {} for key, value in params.items...

[ "def", "rpc", "(", "_cloud_rpc_name", ",", "*", "*", "params", ")", ":", "encoded_params", "=", "{", "}", "for", "key", ",", "value", "in", "params", ".", "items", "(", ")", ":", "if", "isinstance", "(", "params", ",", "leancloud", ".", "Object", ")"...

36.666667

15.222222

def publish(self, topic, schema=None, name=None): """ Publish this stream on a topic for other Streams applications to subscribe to. A Streams application may publish a stream to allow other Streams applications to subscribe to it. A subscriber matches a publisher if the topic an...

[ "def", "publish", "(", "self", ",", "topic", ",", "schema", "=", "None", ",", "name", "=", "None", ")", ":", "sl", "=", "_SourceLocation", "(", "_source_info", "(", ")", ",", "'publish'", ")", "schema", "=", "streamsx", ".", "topology", ".", "schema", ...

43.597015

23.955224

def authenticate(self): """ Authenticates with the PA Oauth system """ if self._auth_token is None or self._token_expiry < time.time(): self._perform_auth() yield self._auth_token

[ "def", "authenticate", "(", "self", ")", ":", "if", "self", ".", "_auth_token", "is", "None", "or", "self", ".", "_token_expiry", "<", "time", ".", "time", "(", ")", ":", "self", ".", "_perform_auth", "(", ")", "yield", "self", ".", "_auth_token" ]

28.125

14.125

def parse_pseudo_lang(self, sel, m, has_selector): """Parse pseudo language.""" values = m.group('values') patterns = [] for token in RE_VALUES.finditer(values): if token.group('split'): continue value = token.group('value') if value.s...

[ "def", "parse_pseudo_lang", "(", "self", ",", "sel", ",", "m", ",", "has_selector", ")", ":", "values", "=", "m", ".", "group", "(", "'values'", ")", "patterns", "=", "[", "]", "for", "token", "in", "RE_VALUES", ".", "finditer", "(", "values", ")", "...

36.892857

17.25

def createTable(self, tableName, path=None, source=None, schema=None, **options): """Creates a table based on the dataset in a data source. It returns the DataFrame associated with the table. The data source is specified by the ``source`` and a set of ``options``. If ``source`` is not ...

[ "def", "createTable", "(", "self", ",", "tableName", ",", "path", "=", "None", ",", "source", "=", "None", ",", "schema", "=", "None", ",", "*", "*", "options", ")", ":", "if", "path", "is", "not", "None", ":", "options", "[", "\"path\"", "]", "=",...

48.962963

28.074074

def add_full_state_methods(class_with_globalize_methods): """ class decorator to create "_full_state" methods/properties on the class (so they are valid for all instances created from this class). Parameters ---------- class_with_globalize_methods """ assert hasattr(class_with_globaliz...

[ "def", "add_full_state_methods", "(", "class_with_globalize_methods", ")", ":", "assert", "hasattr", "(", "class_with_globalize_methods", ",", "'active_set'", ")", "assert", "hasattr", "(", "class_with_globalize_methods", ",", "'nstates_full'", ")", "for", "name", ",", ...

42.133333

25.6

def register(self, schema): """Register input schema class. When registering a schema, all inner schemas are registered as well. :param Schema schema: schema to register. :return: old registered schema. :rtype: type """ result = None uuid = schema.uuid ...

[ "def", "register", "(", "self", ",", "schema", ")", ":", "result", "=", "None", "uuid", "=", "schema", ".", "uuid", "if", "uuid", "in", "self", ".", "_schbyuuid", ":", "result", "=", "self", ".", "_schbyuuid", "[", "uuid", "]", "if", "result", "!=", ...

24.09375

22.65625

def acosh(x): """ Inverse hyperbolic cosine """ if isinstance(x, UncertainFunction): mcpts = np.arccosh(x._mcpts) return UncertainFunction(mcpts) else: return np.arccosh(x)

[ "def", "acosh", "(", "x", ")", ":", "if", "isinstance", "(", "x", ",", "UncertainFunction", ")", ":", "mcpts", "=", "np", ".", "arccosh", "(", "x", ".", "_mcpts", ")", "return", "UncertainFunction", "(", "mcpts", ")", "else", ":", "return", "np", "."...

23.111111

9.555556

def consecutive_groups(iterable, ordering=lambda x: x): """Yield groups of consecutive items using :func:`itertools.groupby`. The *ordering* function determines whether two items are adjacent by returning their position. By default, the ordering function is the identity function. This is suitable f...

[ "def", "consecutive_groups", "(", "iterable", ",", "ordering", "=", "lambda", "x", ":", "x", ")", ":", "for", "k", ",", "g", "in", "groupby", "(", "enumerate", "(", "iterable", ")", ",", "key", "=", "lambda", "x", ":", "x", "[", "0", "]", "-", "o...

32.171429

19.771429

def upload_index_file(self, test_address, timestamp): """ Create an index.html file with links to all the log files that were just uploaded. """ global already_uploaded_files already_uploaded_files = list(set(already_uploaded_files)) already_uploaded_files.sort() file...

[ "def", "upload_index_file", "(", "self", ",", "test_address", ",", "timestamp", ")", ":", "global", "already_uploaded_files", "already_uploaded_files", "=", "list", "(", "set", "(", "already_uploaded_files", ")", ")", "already_uploaded_files", ".", "sort", "(", ")",...

48.529412

12

def toURLEncoded(self): """Generate an x-www-urlencoded string""" args = self.toPostArgs().items() args.sort() return urllib.urlencode(args)

[ "def", "toURLEncoded", "(", "self", ")", ":", "args", "=", "self", ".", "toPostArgs", "(", ")", ".", "items", "(", ")", "args", ".", "sort", "(", ")", "return", "urllib", ".", "urlencode", "(", "args", ")" ]

33.6

8.2

def _publish_grade(self, score, only_if_higher=None): """ Publish a grade to the runtime. """ grade_dict = { 'value': score.raw_earned, 'max_value': score.raw_possible, 'only_if_higher': only_if_higher, } self.runtime.publish(self, 'gra...

[ "def", "_publish_grade", "(", "self", ",", "score", ",", "only_if_higher", "=", "None", ")", ":", "grade_dict", "=", "{", "'value'", ":", "score", ".", "raw_earned", ",", "'max_value'", ":", "score", ".", "raw_possible", ",", "'only_if_higher'", ":", "only_i...

32.7

8.9

def get_sdc_by_id(self, id): """ Get ScaleIO SDC object by its id :param name: id of SDC :return: ScaleIO SDC object :raise KeyError: No SDC with specified id found :rtype: SDC object """ for sdc in self.sdc: if sdc.id == id: re...

[ "def", "get_sdc_by_id", "(", "self", ",", "id", ")", ":", "for", "sdc", "in", "self", ".", "sdc", ":", "if", "sdc", ".", "id", "==", "id", ":", "return", "sdc", "raise", "KeyError", "(", "\"SDC with that ID not found\"", ")" ]

30.833333

8.833333

def validation_curve(train_scores, test_scores, param_range, param_name=None, semilogx=False, ax=None): """Plot a validation curve Plot a metric vs hyperpameter values for the training and test set Parameters ---------- train_scores : array-like Scores for the training...

[ "def", "validation_curve", "(", "train_scores", ",", "test_scores", ",", "param_range", ",", "param_name", "=", "None", ",", "semilogx", "=", "False", ",", "ax", "=", "None", ")", ":", "if", "ax", "is", "None", ":", "ax", "=", "plt", ".", "gca", "(", ...

28.129032

23.33871

def _set_addr(self, addr): """private helper method""" if self._addr != addr: ioctl(self._fd, SMBUS.I2C_SLAVE, addr) self._addr = addr

[ "def", "_set_addr", "(", "self", ",", "addr", ")", ":", "if", "self", ".", "_addr", "!=", "addr", ":", "ioctl", "(", "self", ".", "_fd", ",", "SMBUS", ".", "I2C_SLAVE", ",", "addr", ")", "self", ".", "_addr", "=", "addr" ]

34

9

def add_roles(self, databaseName, roleNames, collectionName=None): """Add multiple roles Args: databaseName (str): Database Name roleNames (list of RoleSpecs): roles Keyword Args: collectionName (str): Collection Raises: ...

[ "def", "add_roles", "(", "self", ",", "databaseName", ",", "roleNames", ",", "collectionName", "=", "None", ")", ":", "for", "roleName", "in", "roleNames", ":", "self", ".", "add_role", "(", "databaseName", ",", "roleName", ",", "collectionName", ")" ]

34.133333

19.333333

def generate_entropy(strength, internal_entropy, external_entropy): ''' strength - length of produced seed. One of 128, 192, 256 random - binary stream of random data from external HRNG ''' if strength not in (128, 192, 256): raise ValueError("Invalid strength") if not internal_entropy:...

[ "def", "generate_entropy", "(", "strength", ",", "internal_entropy", ",", "external_entropy", ")", ":", "if", "strength", "not", "in", "(", "128", ",", "192", ",", "256", ")", ":", "raise", "ValueError", "(", "\"Invalid strength\"", ")", "if", "not", "intern...

32.555556

21.888889

def deconstruct(self): """Deconstruction for migrations. Return a simpler object (_SerializedWorkflow), since our Workflows are rather hard to serialize: Django doesn't like deconstructing metaclass-built classes. """ name, path, args, kwargs = super(StateField, self).de...

[ "def", "deconstruct", "(", "self", ")", ":", "name", ",", "path", ",", "args", ",", "kwargs", "=", "super", "(", "StateField", ",", "self", ")", ".", "deconstruct", "(", ")", "# We want to display the proper class name, which isn't available", "# at the same point f...

40.541667

20.875

def _getModules(self): """ Import and load application modules. :return: <dict> """ modules = {} modulesPath = os.path.join("application", "module") moduleList = os.listdir(modulesPath) for moduleName in moduleList: modulePath = os.path.join(...

[ "def", "_getModules", "(", "self", ")", ":", "modules", "=", "{", "}", "modulesPath", "=", "os", ".", "path", ".", "join", "(", "\"application\"", ",", "\"module\"", ")", "moduleList", "=", "os", ".", "listdir", "(", "modulesPath", ")", "for", "moduleNam...

30

18

def verify_password(self, password, password_hash): """Verify plaintext ``password`` against ``hashed password``. Args: password(str): Plaintext password that the user types in. password_hash(str): Password hash generated by a previous call to ``hash_password()``. Return...

[ "def", "verify_password", "(", "self", ",", "password", ",", "password_hash", ")", ":", "# Print deprecation warning if called with (password, user) instead of (password, user.password)", "if", "isinstance", "(", "password_hash", ",", "self", ".", "user_manager", ".", "db_man...

46.344828

29.586207

def line_content_counts_as_uncovered_manual(content: str) -> bool: """ Args: content: A line with indentation and tail comments/space removed. Returns: Whether the line could be included in the coverage report. """ # Omit empty lines. if not content: return False # ...

[ "def", "line_content_counts_as_uncovered_manual", "(", "content", ":", "str", ")", "->", "bool", ":", "# Omit empty lines.", "if", "not", "content", ":", "return", "False", "# Omit declarations.", "for", "keyword", "in", "[", "'def'", ",", "'class'", "]", ":", "...

27.684211

22.526316

def _viewEntryNumber(self, ientry, select=True): """views entry #ientry. Also selects entry in listview if select=True""" # pass entry to viewer dialog self._viewing_ientry = ientry entry = self.purrer.entries[ientry] busy = BusyIndicator() self.view_entry_dialog.viewEntr...

[ "def", "_viewEntryNumber", "(", "self", ",", "ientry", ",", "select", "=", "True", ")", ":", "# pass entry to viewer dialog", "self", ".", "_viewing_ientry", "=", "ientry", "entry", "=", "self", ".", "purrer", ".", "entries", "[", "ientry", "]", "busy", "=",...

52.428571

16.714286

def main(**options): """Spline loc tool.""" application = Application(**options) # fails application when your defined threshold is higher than your ratio of com/loc. if not application.run(): sys.exit(1) return application

[ "def", "main", "(", "*", "*", "options", ")", ":", "application", "=", "Application", "(", "*", "*", "options", ")", "# fails application when your defined threshold is higher than your ratio of com/loc.", "if", "not", "application", ".", "run", "(", ")", ":", "sys"...

35

17

def baseline_or_audit(self, allow_deletion=False, audit_only=False): """Baseline synchonization or audit. Both functions implemented in this routine because audit is a prerequisite for a baseline sync. In the case of baseline sync the last timestamp seen is recorded as client state. ...

[ "def", "baseline_or_audit", "(", "self", ",", "allow_deletion", "=", "False", ",", "audit_only", "=", "False", ")", ":", "action", "=", "(", "'audit'", "if", "(", "audit_only", ")", "else", "'baseline sync'", ")", "self", ".", "logger", ".", "debug", "(", ...

50.313953

18.534884

def _utc_to_local(self, data, local_zone="America/Los_Angeles"): """ Adjust index of dataframe according to timezone that is requested by user. Parameters ---------- data : pd.DataFrame() Pandas dataframe of json timeseries response from server. local_zone :...

[ "def", "_utc_to_local", "(", "self", ",", "data", ",", "local_zone", "=", "\"America/Los_Angeles\"", ")", ":", "# Accounts for localtime shift", "data", ".", "index", "=", "data", ".", "index", ".", "tz_localize", "(", "pytz", ".", "utc", ")", ".", "tz_convert...

33.416667

24.875

def ParseMany(text): """Parses many YAML documents into a list of Python objects. Args: text: A YAML source with multiple documents embedded. Returns: A list of Python data structures corresponding to the YAML documents. """ precondition.AssertType(text, Text) if compatibility.PY2: text = tex...

[ "def", "ParseMany", "(", "text", ")", ":", "precondition", ".", "AssertType", "(", "text", ",", "Text", ")", "if", "compatibility", ".", "PY2", ":", "text", "=", "text", ".", "encode", "(", "\"utf-8\"", ")", "return", "list", "(", "yaml", ".", "safe_lo...

24.266667

21.533333

def _getParameters(self): """Returns the result of this decorator.""" param = self.query._getParameters() key = self.__PATTERN_KEY % (str(self._getIndex())) val = self.__PATTERN_VALUE % (self.__column, self.__value) #self.__column.getColumnAlias() param.update({key:val}) ...

[ "def", "_getParameters", "(", "self", ")", ":", "param", "=", "self", ".", "query", ".", "_getParameters", "(", ")", "key", "=", "self", ".", "__PATTERN_KEY", "%", "(", "str", "(", "self", ".", "_getIndex", "(", ")", ")", ")", "val", "=", "self", "...

41.625

11.5

def fetch_csv_dataframe( download_url, filename=None, subdir=None, **pandas_kwargs): """ Download a remote file from `download_url` and save it locally as `filename`. Load that local file as a CSV into Pandas using extra keyword arguments such as sep='\t'. """ path = ...

[ "def", "fetch_csv_dataframe", "(", "download_url", ",", "filename", "=", "None", ",", "subdir", "=", "None", ",", "*", "*", "pandas_kwargs", ")", ":", "path", "=", "fetch_file", "(", "download_url", "=", "download_url", ",", "filename", "=", "filename", ",",...

31.533333

17.266667

def get_composition_query_session_for_repository(self, repository_id, proxy): """Gets a composition query session for the given repository. arg: repository_id (osid.id.Id): the Id of the repository arg proxy (osid.proxy.Proxy): a proxy return: (osid.repository.CompositionQuerySes...

[ "def", "get_composition_query_session_for_repository", "(", "self", ",", "repository_id", ",", "proxy", ")", ":", "if", "repository_id", "is", "None", ":", "raise", "NullArgument", "(", ")", "if", "not", "self", ".", "supports_composition_query", "(", ")", ":", ...

42.903226

16.451613

def get(self, request, **kwargs): """ Return the customer's valid subscriptions. Returns with status code 200. """ customer, _created = Customer.get_or_create( subscriber=subscriber_request_callback(self.request) ) serializer = SubscriptionSerializer(customer.subscription) return Response(serialize...

[ "def", "get", "(", "self", ",", "request", ",", "*", "*", "kwargs", ")", ":", "customer", ",", "_created", "=", "Customer", ".", "get_or_create", "(", "subscriber", "=", "subscriber_request_callback", "(", "self", ".", "request", ")", ")", "serializer", "=...

26.333333

15.333333

def relpath(self): """ Determine the relative path to this repository Returns: str: relative path to this repository """ here = os.path.abspath(os.path.curdir) relpath = os.path.relpath(self.fpath, here) return relpath

[ "def", "relpath", "(", "self", ")", ":", "here", "=", "os", ".", "path", ".", "abspath", "(", "os", ".", "path", ".", "curdir", ")", "relpath", "=", "os", ".", "path", ".", "relpath", "(", "self", ".", "fpath", ",", "here", ")", "return", "relpat...

27.8

14.4

def update_widget_attrs(self, bound_field, attrs): """ Update the dictionary of attributes used while rendering the input widget """ bound_field.form.update_widget_attrs(bound_field, attrs) widget_classes = self.widget.attrs.get('class', None) if widget_classes: ...

[ "def", "update_widget_attrs", "(", "self", ",", "bound_field", ",", "attrs", ")", ":", "bound_field", ".", "form", ".", "update_widget_attrs", "(", "bound_field", ",", "attrs", ")", "widget_classes", "=", "self", ".", "widget", ".", "attrs", ".", "get", "(",...

40.25

15.916667

def read_interactions(path, comments="#", directed=False, delimiter=None, nodetype=None, timestamptype=None, encoding='utf-8', keys=False): """Read a DyNetx graph from interaction list format. Parameters ---------- path : basestring The desired output filenam...

[ "def", "read_interactions", "(", "path", ",", "comments", "=", "\"#\"", ",", "directed", "=", "False", ",", "delimiter", "=", "None", ",", "nodetype", "=", "None", ",", "timestamptype", "=", "None", ",", "encoding", "=", "'utf-8'", ",", "keys", "=", "Fal...

34.190476

27.095238

def over(self, window): """ Define a windowing column. :param window: a :class:`WindowSpec` :return: a Column >>> from pyspark.sql import Window >>> window = Window.partitionBy("name").orderBy("age").rowsBetween(-1, 1) >>> from pyspark.sql.functions import rank,...

[ "def", "over", "(", "self", ",", "window", ")", ":", "from", "pyspark", ".", "sql", ".", "window", "import", "WindowSpec", "if", "not", "isinstance", "(", "window", ",", "WindowSpec", ")", ":", "raise", "TypeError", "(", "\"window should be WindowSpec\"", ")...

36.117647

15.176471

def next_flightmode_colour(self): '''allocate a colour to be used for a flight mode''' if self.flightmode_colour_index > len(flightmode_colours): print("Out of colours; reusing") self.flightmode_colour_index = 0 ret = flightmode_colours[self.flightmode_colour_index] ...

[ "def", "next_flightmode_colour", "(", "self", ")", ":", "if", "self", ".", "flightmode_colour_index", ">", "len", "(", "flightmode_colours", ")", ":", "print", "(", "\"Out of colours; reusing\"", ")", "self", ".", "flightmode_colour_index", "=", "0", "ret", "=", ...

46

13.25

def qteMakeWidgetActive(self, widgetObj: QtGui.QWidget): """ Give keyboard focus to ``widgetObj``. If ``widgetObj`` is **None** then the internal focus state is reset, but the focus manger will automatically activate the first available widget again. |Args| * `...

[ "def", "qteMakeWidgetActive", "(", "self", ",", "widgetObj", ":", "QtGui", ".", "QWidget", ")", ":", "# Void the active widget information.", "if", "widgetObj", "is", "None", ":", "self", ".", "_qteActiveWidget", "=", "None", "return", "# Ensure that this applet is an...

33.775862

21.017241

def get_or_create_iobject(identifier_uid, identifier_namespace_uri, iobject_type_name, iobject_type_namespace_uri, iobject_type_revision_name, iobject_family_name, ...

[ "def", "get_or_create_iobject", "(", "identifier_uid", ",", "identifier_namespace_uri", ",", "iobject_type_name", ",", "iobject_type_namespace_uri", ",", "iobject_type_revision_name", ",", "iobject_family_name", ",", "iobject_family_revision_name", "=", "\"\"", ",", "identifier...

48.246914

31.45679

def text(self, text, stylename=None): """Add text within the current container.""" assert self._containers container = self._containers[-1] if stylename is not None: stylename = self._get_style_name(stylename) container.addElement(Span(stylename=stylename, text=te...

[ "def", "text", "(", "self", ",", "text", ",", "stylename", "=", "None", ")", ":", "assert", "self", ".", "_containers", "container", "=", "self", ".", "_containers", "[", "-", "1", "]", "if", "stylename", "is", "not", "None", ":", "stylename", "=", "...

42.222222

11.111111

def action(self, observations): """ Calculate value for given state """ observations = self.input_block(observations) policy_hidden = self.policy_backbone(observations) action = self.action_head(policy_hidden) return action

[ "def", "action", "(", "self", ",", "observations", ")", ":", "observations", "=", "self", ".", "input_block", "(", "observations", ")", "policy_hidden", "=", "self", ".", "policy_backbone", "(", "observations", ")", "action", "=", "self", ".", "action_head", ...

43

11.166667

def guess_mime_type(url): """Use the mimetypes module to lookup the type for an extension. This function also adds some extensions required for HTML5 """ (mimetype, _mimeencoding) = mimetypes.guess_type(url) if not mimetype: ext = os.path.splitext(url)[1] mimetype = _MIME_TYPES.get(...

[ "def", "guess_mime_type", "(", "url", ")", ":", "(", "mimetype", ",", "_mimeencoding", ")", "=", "mimetypes", ".", "guess_type", "(", "url", ")", "if", "not", "mimetype", ":", "ext", "=", "os", ".", "path", ".", "splitext", "(", "url", ")", "[", "1",...

35.615385

14.307692

def expose_ideal_query_execution_start_points(compound_match_query, location_types, coerced_locations): """Ensure that OrientDB only considers desirable query start points in query planning.""" new_queries = [] for match_query in compound_match_query.match_quer...

[ "def", "expose_ideal_query_execution_start_points", "(", "compound_match_query", ",", "location_types", ",", "coerced_locations", ")", ":", "new_queries", "=", "[", "]", "for", "match_query", "in", "compound_match_query", ".", "match_queries", ":", "location_classification"...

59.09375

31.625

def __build_url(self, api_call, **kwargs): """Builds the api query""" kwargs['key'] = self.api_key if 'language' not in kwargs: kwargs['language'] = self.language if 'format' not in kwargs: kwargs['format'] = self.__format api_query = urlencode(kwargs) ...

[ "def", "__build_url", "(", "self", ",", "api_call", ",", "*", "*", "kwargs", ")", ":", "kwargs", "[", "'key'", "]", "=", "self", ".", "api_key", "if", "'language'", "not", "in", "kwargs", ":", "kwargs", "[", "'language'", "]", "=", "self", ".", "lang...

37.25

7.25

def plot(self, figure_list): ''' When each subscript is called, uses its standard plotting Args: figure_list: list of figures passed from the guit ''' #TODO: be smarter about how we plot ScriptIterator if self._current_subscript_stage is not None: ...

[ "def", "plot", "(", "self", ",", "figure_list", ")", ":", "#TODO: be smarter about how we plot ScriptIterator", "if", "self", ".", "_current_subscript_stage", "is", "not", "None", ":", "if", "self", ".", "_current_subscript_stage", "[", "'current_subscript'", "]", "is...

44.606061

34.242424

def dmi(arg, n, high_col='high', low_col='low', close_col='close'): """ Return the dmi+, dmi-, Average directional index ( http://en.wikipedia.org/wiki/Average_Directional_Index ) TODO - break up calcuat """ converted = arg[[close_col, high_col, low_col]] converted.columns = ['close', 'high'...

[ "def", "dmi", "(", "arg", ",", "n", ",", "high_col", "=", "'high'", ",", "low_col", "=", "'low'", ",", "close_col", "=", "'close'", ")", ":", "converted", "=", "arg", "[", "[", "close_col", ",", "high_col", ",", "low_col", "]", "]", "converted", ".",...

31.5

16.678571

def lines(self, encoding=None, errors='strict', retain=True): r""" Open this file, read all lines, return them in a list. Optional arguments: `encoding` - The Unicode encoding (or character set) of the file. The default is ``None``, meaning the content of th...

[ "def", "lines", "(", "self", ",", "encoding", "=", "None", ",", "errors", "=", "'strict'", ",", "retain", "=", "True", ")", ":", "return", "self", ".", "text", "(", "encoding", ",", "errors", ")", ".", "splitlines", "(", "retain", ")" ]

51.833333

23.055556

def must_stop(self): """ Return True if the worker must stop when the current loop is over. """ return bool(self.terminate_gracefuly and self.end_signal_caught or self.num_loops >= self.max_loops or self.end_forced or self.wanted_end_date and datetime.ut...

[ "def", "must_stop", "(", "self", ")", ":", "return", "bool", "(", "self", ".", "terminate_gracefuly", "and", "self", ".", "end_signal_caught", "or", "self", ".", "num_loops", ">=", "self", ".", "max_loops", "or", "self", ".", "end_forced", "or", "self", "....

49.285714

23.285714

def tail(f, window=20): """ Returns the last `window` lines of file `f` as a list. @param window: the number of lines. """ if window == 0: return [] BUFSIZ = 1024 f.seek(0, 2) bytes = f.tell() size = window + 1 block = -1 data = [] while size > 0 and bytes > 0: ...

[ "def", "tail", "(", "f", ",", "window", "=", "20", ")", ":", "if", "window", "==", "0", ":", "return", "[", "]", "BUFSIZ", "=", "1024", "f", ".", "seek", "(", "0", ",", "2", ")", "bytes", "=", "f", ".", "tell", "(", ")", "size", "=", "windo...

28.833333

15.9

def getDevicesById(self): # , query): """ rows = self.camera_collection.get(query) devices_by_id = {} for row in rows: row.pop("classname") device = DataModel.RTSPCameraDevice(**row) devices_by_id[device._id] = device return devices_by_id ...

[ "def", "getDevicesById", "(", "self", ")", ":", "# , query):", "rows", "=", "self", ".", "camera_collection", ".", "get", "(", ")", "devices_by_id", "=", "{", "}", "for", "row", "in", "rows", ":", "classname", "=", "row", ".", "pop", "(", "\"classname\""...

35.130435

10.26087

def declare(full_table_name, definition, context): """ Parse declaration and create new SQL table accordingly. :param full_table_name: full name of the table :param definition: DataJoint table definition :param context: dictionary of objects that might be referred to in the table. """ tabl...

[ "def", "declare", "(", "full_table_name", ",", "definition", ",", "context", ")", ":", "table_name", "=", "full_table_name", ".", "strip", "(", "'`'", ")", ".", "split", "(", "'.'", ")", "[", "1", "]", "if", "len", "(", "table_name", ")", ">", "MAX_TAB...

42.5

20.092593

def intersects_first(self, ray_origins, ray_directions): """ Find the index of the first triangle a ray hits. Parameters ---------- ray_origins: (n,3) float, origins of rays ray_directions: (n,3) float, direction (vec...

[ "def", "intersects_first", "(", "self", ",", "ray_origins", ",", "ray_directions", ")", ":", "ray_origins", "=", "np", ".", "asanyarray", "(", "deepcopy", "(", "ray_origins", ")", ")", "ray_directions", "=", "np", ".", "asanyarray", "(", "ray_directions", ")",...

30.130435

20.391304

def send_event(self, event_type, category=None, dimensions=None, properties=None, timestamp=None): """Send an event to SignalFx. Args: event_type (string): the event type (name of the event time series). category (string): the category of the e...

[ "def", "send_event", "(", "self", ",", "event_type", ",", "category", "=", "None", ",", "dimensions", "=", "None", ",", "properties", "=", "None", ",", "timestamp", "=", "None", ")", ":", "if", "category", "and", "category", "not", "in", "SUPPORTED_EVENT_C...

43.033333

19.766667

def _assemble_and_send_request(self): """ Fires off the Fedex request. @warning: NEVER CALL THIS METHOD DIRECTLY. CALL send_request(), WHICH RESIDES ON FedexBaseService AND IS INHERITED. """ # Fire off the query. return self.client.service.getPickupAvailabil...

[ "def", "_assemble_and_send_request", "(", "self", ")", ":", "# Fire off the query.", "return", "self", ".", "client", ".", "service", ".", "getPickupAvailability", "(", "WebAuthenticationDetail", "=", "self", ".", "WebAuthenticationDetail", ",", "ClientDetail", "=", "...

40.153846

13.153846

def exit_config_mode(self, exit_config="exit all", pattern="#"): """Exit from configuration mode.""" return super(RadETXBase, self).exit_config_mode( exit_config=exit_config, pattern=pattern )

[ "def", "exit_config_mode", "(", "self", ",", "exit_config", "=", "\"exit all\"", ",", "pattern", "=", "\"#\"", ")", ":", "return", "super", "(", "RadETXBase", ",", "self", ")", ".", "exit_config_mode", "(", "exit_config", "=", "exit_config", ",", "pattern", ...

44.8

16.6

def remove(path, follow_symlink=False): """ Implements an remove function that will delete files, folder trees and symlink trees 1.) Remove a file 2.) Remove a symlink and follow into with a recursive rm if follow_symlink 3.) Remove directory with rmtree Args: path (str): path to remov...

[ "def", "remove", "(", "path", ",", "follow_symlink", "=", "False", ")", ":", "if", "os", ".", "path", ".", "isfile", "(", "path", ")", ":", "os", ".", "remove", "(", "path", ")", "elif", "os", ".", "path", ".", "islink", "(", "path", ")", ":", ...

29.95

19.05

def handle(self): """ Executes the command. """ creator = MigrationCreator() name = self.argument("name") table = self.option("table") create = bool(self.option("create")) if not table and create is not False: table = create path = s...

[ "def", "handle", "(", "self", ")", ":", "creator", "=", "MigrationCreator", "(", ")", "name", "=", "self", ".", "argument", "(", "\"name\"", ")", "table", "=", "self", ".", "option", "(", "\"table\"", ")", "create", "=", "bool", "(", "self", ".", "op...

27.7

18.8

def _raw_hex_id(obj): """Return the padded hexadecimal id of ``obj``.""" # interpret as a pointer since that's what really what id returns packed = struct.pack('@P', id(obj)) return ''.join(map(_replacer, packed))

[ "def", "_raw_hex_id", "(", "obj", ")", ":", "# interpret as a pointer since that's what really what id returns", "packed", "=", "struct", ".", "pack", "(", "'@P'", ",", "id", "(", "obj", ")", ")", "return", "''", ".", "join", "(", "map", "(", "_replacer", ",",...

45

10.2

def get_values(self, *args, **kwargs): """ Convenience method that for simple single tag queries will return just the values to be iterated on. """ if isinstance(args[0], list): raise ValueError("Can only get_values() for a single tag.") response = self.get_d...

[ "def", "get_values", "(", "self", ",", "*", "args", ",", "*", "*", "kwargs", ")", ":", "if", "isinstance", "(", "args", "[", "0", "]", ",", "list", ")", ":", "raise", "ValueError", "(", "\"Can only get_values() for a single tag.\"", ")", "response", "=", ...

40.615385

15.692308

def tag_and_push_image(self, image, target_image, insecure=False, force=False, dockercfg=None): """ tag provided image and push it to registry :param image: str or ImageName, image id or name :param target_image: ImageName, img :param insecure: bool, a...

[ "def", "tag_and_push_image", "(", "self", ",", "image", ",", "target_image", ",", "insecure", "=", "False", ",", "force", "=", "False", ",", "dockercfg", "=", "None", ")", ":", "logger", ".", "info", "(", "\"tagging and pushing image '%s' as '%s'\"", ",", "ima...

49.111111

18.888889

def _trigger_event(self, event, *args, **kwargs): """Invoke an event handler.""" run_async = kwargs.pop('run_async', False) if event in self.handlers: if run_async: return self.start_background_task(self.handlers[event], *args) else: try: ...

[ "def", "_trigger_event", "(", "self", ",", "event", ",", "*", "args", ",", "*", "*", "kwargs", ")", ":", "run_async", "=", "kwargs", ".", "pop", "(", "'run_async'", ",", "False", ")", "if", "event", "in", "self", ".", "handlers", ":", "if", "run_asyn...

41.363636

16.272727

def mark(self, channel, ts): """ https://api.slack.com/methods/im.mark """ self.params.update({ 'channel': channel, 'ts': ts, }) return FromUrl('https://slack.com/api/im.mark', self._requests)(data=self.params).post()

[ "def", "mark", "(", "self", ",", "channel", ",", "ts", ")", ":", "self", ".", "params", ".", "update", "(", "{", "'channel'", ":", "channel", ",", "'ts'", ":", "ts", ",", "}", ")", "return", "FromUrl", "(", "'https://slack.com/api/im.mark'", ",", "self...

35.375

16.125

def _seconds_as_string(seconds): """ Returns seconds as a human-friendly string, e.g. '1d 4h 47m 41s' """ TIME_UNITS = [('s', 60), ('m', 60), ('h', 24), ('d', None)] unit_strings = [] cur = max(int(seconds), 1) for suffix, size in TIME_UNITS: if size is not None: cur, res...

[ "def", "_seconds_as_string", "(", "seconds", ")", ":", "TIME_UNITS", "=", "[", "(", "'s'", ",", "60", ")", ",", "(", "'m'", ",", "60", ")", ",", "(", "'h'", ",", "24", ")", ",", "(", "'d'", ",", "None", ")", "]", "unit_strings", "=", "[", "]", ...

31.933333

13.133333

def channels(self): """channel count or 0 for unknown""" # from ProgramConfigElement() if hasattr(self, "pce_channels"): return self.pce_channels conf = getattr( self, "extensionChannelConfiguration", self.channelConfiguration) if conf == 1: ...

[ "def", "channels", "(", "self", ")", ":", "# from ProgramConfigElement()", "if", "hasattr", "(", "self", ",", "\"pce_channels\"", ")", ":", "return", "self", ".", "pce_channels", "conf", "=", "getattr", "(", "self", ",", "\"extensionChannelConfiguration\"", ",", ...

25.608696

17.956522

def download_data(cdbs_root, verbose=True, dry_run=False): """Download CDBS data files to given root directory. Download is skipped if a data file already exists. Parameters ---------- cdbs_root : str Root directory for CDBS data files. verbose : bool Print extra information to...

[ "def", "download_data", "(", "cdbs_root", ",", "verbose", "=", "True", ",", "dry_run", "=", "False", ")", ":", "from", ".", "config", "import", "conf", "# Avoid potential circular import", "if", "not", "os", ".", "path", ".", "exists", "(", "cdbs_root", ")",...

28.829268

19.231707

def DFS_Tree(G): """ Return an oriented tree constructed from dfs. """ if not G.vertices: raise GraphInsertError("This graph have no vertices.") pred = {} T = digraph.DiGraph() vertex_data = DFS(G) for vertex in vertex_data: pred[vertex] = vertex_data[vertex][0]...

[ "def", "DFS_Tree", "(", "G", ")", ":", "if", "not", "G", ".", "vertices", ":", "raise", "GraphInsertError", "(", "\"This graph have no vertices.\"", ")", "pred", "=", "{", "}", "T", "=", "digraph", ".", "DiGraph", "(", ")", "vertex_data", "=", "DFS", "("...

29.045455

12.136364

def run_command_orig(cmd): """ No idea how th f to get this to work """ process = subprocess.Popen(cmd, shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE) stdout, stderr = process.communicate() if process.returncode == 0: os.killpg(os.getpgid(pro.pid), signal.SIGTERM) else: ...

[ "def", "run_command_orig", "(", "cmd", ")", ":", "process", "=", "subprocess", ".", "Popen", "(", "cmd", ",", "shell", "=", "True", ",", "stdout", "=", "subprocess", ".", "PIPE", ",", "stderr", "=", "subprocess", ".", "PIPE", ")", "stdout", ",", "stder...

47

23.222222

def new(cls, user, provider, federated_id): """ Create a new login :param user: AuthUser :param provider: str - ie: facebook, twitter, ... :param federated_id: str - an id associated to provider :return: """ if cls.get_user(provider, federated_id): ...

[ "def", "new", "(", "cls", ",", "user", ",", "provider", ",", "federated_id", ")", ":", "if", "cls", ".", "get_user", "(", "provider", ",", "federated_id", ")", ":", "raise", "exceptions", ".", "AuthError", "(", "\"Federation already\"", ")", "return", "cls...

35.857143

12.714286

def _parse_recipients(self, to): """Make sure we have a "," separated list of recipients :param to: Recipient(s) :type to: (str, list, :class:`pyfilemail.Contact`, :class:`pyfilemail.Group` ) :rtype: ``str`` ...

[ "def", "_parse_recipients", "(", "self", ",", "to", ")", ":", "if", "to", "is", "None", ":", "return", "None", "if", "isinstance", "(", "to", ",", "list", ")", ":", "recipients", "=", "[", "]", "for", "recipient", "in", "to", ":", "if", "isinstance",...

26.702703

18.972973

def goassoc_fieldmap(relationship_type=ACTS_UPSTREAM_OF_OR_WITHIN): """ Returns a mapping of canonical monarch fields to amigo-golr. See: https://github.com/geneontology/amigo/blob/master/metadata/ann-config.yaml """ return { M.SUBJECT: 'bioentity', M.SUBJECT_CLOSURE: 'bioentity', ...

[ "def", "goassoc_fieldmap", "(", "relationship_type", "=", "ACTS_UPSTREAM_OF_OR_WITHIN", ")", ":", "return", "{", "M", ".", "SUBJECT", ":", "'bioentity'", ",", "M", ".", "SUBJECT_CLOSURE", ":", "'bioentity'", ",", "## In the GO AmiGO instance, the type field is not correct...

42.413793

17.862069

def bindata(df, delta=1.0, method="average"): """ Bin average the index (usually pressure) to a given interval (default delta = 1). """ start = np.floor(df.index[0]) stop = np.ceil(df.index[-1]) new_index = np.arange(start, stop, delta) binned = pd.cut(df.index, bins=new_index) if m...

[ "def", "bindata", "(", "df", ",", "delta", "=", "1.0", ",", "method", "=", "\"average\"", ")", ":", "start", "=", "np", ".", "floor", "(", "df", ".", "index", "[", "0", "]", ")", "stop", "=", "np", ".", "ceil", "(", "df", ".", "index", "[", "...

31.545455

16.363636

def recall(ntp, nfn): ''' This calculates recall. https://en.wikipedia.org/wiki/Precision_and_recall Parameters ---------- ntp : int The number of true positives. nfn : int The number of false negatives. Returns ------- float The precision calculated...

[ "def", "recall", "(", "ntp", ",", "nfn", ")", ":", "if", "(", "ntp", "+", "nfn", ")", ">", "0", ":", "return", "ntp", "/", "(", "ntp", "+", "nfn", ")", "else", ":", "return", "np", ".", "nan" ]

15.259259

27.037037

def add(self, resource): """Add a resource to the context""" if isinstance(resource, Resource): if isinstance(resource, Secret) and \ resource.mount != 'cubbyhole': ensure_backend(resource, SecretBackend, ...

[ "def", "add", "(", "self", ",", "resource", ")", ":", "if", "isinstance", "(", "resource", ",", "Resource", ")", ":", "if", "isinstance", "(", "resource", ",", "Secret", ")", "and", "resource", ".", "mount", "!=", "'cubbyhole'", ":", "ensure_backend", "(...

44.545455

12.227273

def fix_e305(self, result): """Add missing 2 blank lines after end of function or class.""" cr = '\n' # check comment line offset = result['line'] - 2 while True: if offset < 0: break line = self.source[offset].lstrip() if len(l...

[ "def", "fix_e305", "(", "self", ",", "result", ")", ":", "cr", "=", "'\\n'", "# check comment line", "offset", "=", "result", "[", "'line'", "]", "-", "2", "while", "True", ":", "if", "offset", "<", "0", ":", "break", "line", "=", "self", ".", "sourc...

30.5625

14

def query_recent(num=8, **kwargs): ''' query recent posts. ''' order_by_create = kwargs.get('order_by_create', False) kind = kwargs.get('kind', None) if order_by_create: if kind: recent_recs = TabPost.select().where( (TabPos...

[ "def", "query_recent", "(", "num", "=", "8", ",", "*", "*", "kwargs", ")", ":", "order_by_create", "=", "kwargs", ".", "get", "(", "'order_by_create'", ",", "False", ")", "kind", "=", "kwargs", ".", "get", "(", "'kind'", ",", "None", ")", "if", "orde...

34.727273

14.242424

def upsert_and_fetch(coll, doc, **kwargs): """ Fetch exactly one matching document or upsert the document if not found, returning the matching or upserted document. See https://jira.mongodb.org/browse/SERVER-28434 describing the condition where MongoDB is uninterested in providing an upsert...

[ "def", "upsert_and_fetch", "(", "coll", ",", "doc", ",", "*", "*", "kwargs", ")", ":", "return", "coll", ".", "find_one_and_update", "(", "doc", ",", "{", "\"$setOnInsert\"", ":", "doc", "}", ",", "upsert", "=", "True", ",", "return_document", "=", "pymo...

30.653846

16.269231

def setCompleteRedYellowGreenDefinition(self, tlsID, tls): """setCompleteRedYellowGreenDefinition(string, ) -> None . """ length = 1 + 4 + 1 + 4 + \ len(tls._subID) + 1 + 4 + 1 + 4 + 1 + 4 + 1 + 4 # tls parameter itemNo = 1 + 1 + 1 + 1 + 1 for p in tls._phas...

[ "def", "setCompleteRedYellowGreenDefinition", "(", "self", ",", "tlsID", ",", "tls", ")", ":", "length", "=", "1", "+", "4", "+", "1", "+", "4", "+", "len", "(", "tls", ".", "_subID", ")", "+", "1", "+", "4", "+", "1", "+", "4", "+", "1", "+", ...

47.9375

23.28125

def query_flag(ifo, name, start_time, end_time, source='any', server="segments.ligo.org", veto_definer=None, cache=False): """Return the times where the flag is active Parameters ---------- ifo: string The interferometer to query (H1, L1). name: string ...

[ "def", "query_flag", "(", "ifo", ",", "name", ",", "start_time", ",", "end_time", ",", "source", "=", "'any'", ",", "server", "=", "\"segments.ligo.org\"", ",", "veto_definer", "=", "None", ",", "cache", "=", "False", ")", ":", "info", "=", "name", ".", ...

38.055118

20.582677

def update_records(self, headers, zoneID, updateRecords): """Update DNS records.""" IP = requests.get(self.GET_EXT_IP_URL).text message = True errorsRecords = [] sucessRecords = [] for record in updateRecords: updateEndpoint = '/' + zoneID + '/dns_records/' + ...

[ "def", "update_records", "(", "self", ",", "headers", ",", "zoneID", ",", "updateRecords", ")", ":", "IP", "=", "requests", ".", "get", "(", "self", ".", "GET_EXT_IP_URL", ")", ".", "text", "message", "=", "True", "errorsRecords", "=", "[", "]", "sucessR...

41.366667

13.266667

def get_pull_request_thread(self, repository_id, pull_request_id, thread_id, project=None, iteration=None, base_iteration=None): """GetPullRequestThread. [Preview API] Retrieve a thread in a pull request. :param str repository_id: The repository ID of the pull request's target branch. :p...

[ "def", "get_pull_request_thread", "(", "self", ",", "repository_id", ",", "pull_request_id", ",", "thread_id", ",", "project", "=", "None", ",", "iteration", "=", "None", ",", "base_iteration", "=", "None", ")", ":", "route_values", "=", "{", "}", "if", "pro...

67

31.741935

def _check_superbox_for_top_levels(self, boxes): """Several boxes can only occur at the top level.""" # We are only looking at the boxes contained in a superbox, so if any # of the blacklisted boxes show up here, it's an error. TOP_LEVEL_ONLY_BOXES = set(['dtbl']) box_ids = set([...

[ "def", "_check_superbox_for_top_levels", "(", "self", ",", "boxes", ")", ":", "# We are only looking at the boxes contained in a superbox, so if any", "# of the blacklisted boxes show up here, it's an error.", "TOP_LEVEL_ONLY_BOXES", "=", "set", "(", "[", "'dtbl'", "]", ")", "box...

49.066667

16.666667

def accel_increase_transparency(self, *args): """Callback to increase transparency. """ transparency = self.settings.styleBackground.get_int('transparency') if int(transparency) - 2 > 0: self.settings.styleBackground.set_int('transparency', int(transparency) - 2) retu...

[ "def", "accel_increase_transparency", "(", "self", ",", "*", "args", ")", ":", "transparency", "=", "self", ".", "settings", ".", "styleBackground", ".", "get_int", "(", "'transparency'", ")", "if", "int", "(", "transparency", ")", "-", "2", ">", "0", ":",...

45.857143

16.142857

def start_at(self, start_at): """ Sets the start_at of this Shift. RFC 3339; shifted to location timezone + offset. Precision up to the minute is respected; seconds are truncated. :param start_at: The start_at of this Shift. :type: str """ if start_at is None: ...

[ "def", "start_at", "(", "self", ",", "start_at", ")", ":", "if", "start_at", "is", "None", ":", "raise", "ValueError", "(", "\"Invalid value for `start_at`, must not be `None`\"", ")", "if", "len", "(", "start_at", ")", "<", "1", ":", "raise", "ValueError", "(...

37.066667

25.333333

def process_phosphorylation_statements(self): """Looks for Phosphorylation events in the graph and extracts them into INDRA statements. In particular, looks for a Positive_regulation event node with a child Phosphorylation event node. If Positive_regulation has an outgoing Caus...

[ "def", "process_phosphorylation_statements", "(", "self", ")", ":", "G", "=", "self", ".", "G", "statements", "=", "[", "]", "pwcs", "=", "self", ".", "find_event_parent_with_event_child", "(", "'Positive_regulation'", ",", "'Phosphorylation'", ")", "for", "pair",...

43.066667

23.511111

def from_sec(class_, sec): """ Create a key from an sec bytestream (which is an encoding of a public pair). """ public_pair = sec_to_public_pair(sec, class_._generator) return class_(public_pair=public_pair, is_compressed=is_sec_compressed(sec))

[ "def", "from_sec", "(", "class_", ",", "sec", ")", ":", "public_pair", "=", "sec_to_public_pair", "(", "sec", ",", "class_", ".", "_generator", ")", "return", "class_", "(", "public_pair", "=", "public_pair", ",", "is_compressed", "=", "is_sec_compressed", "("...

46.666667

21

def num_neighbors(self, pores, mode='or', flatten=False): r""" Returns the number of neigbhoring pores for each given input pore Parameters ---------- pores : array_like Pores whose neighbors are to be counted flatten : boolean (optional) If ``Fa...

[ "def", "num_neighbors", "(", "self", ",", "pores", ",", "mode", "=", "'or'", ",", "flatten", "=", "False", ")", ":", "pores", "=", "self", ".", "_parse_indices", "(", "pores", ")", "# Count number of neighbors", "num", "=", "self", ".", "find_neighbor_pores"...

37.826667

25.893333

def wateryear(self): """The actual hydrological year according to the selected reference month. The reference mont reference |Date.refmonth| defaults to November: >>> october = Date('1996.10.01') >>> november = Date('1996.11.01') >>> october.wateryear 1996 ...

[ "def", "wateryear", "(", "self", ")", ":", "if", "self", ".", "month", "<", "self", ".", "_firstmonth_wateryear", ":", "return", "self", ".", "year", "return", "self", ".", "year", "+", "1" ]

26.724138

18.448276