kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def create(cls, kwargs): """Initializes a new instance, adds it to the db and commits the transaction. Args: kwargs: The keyword arguments for the init constructor. Examples: >>> user = User.create(name="Vicky", email="vicky@h.com") >>> user.id...	[ "def", "create", "(", "cls", ",", "", "", "kwargs", ")", ":", "try", ":", "return", "cls", ".", "add", "(", "cls", ".", "new", "(", "", "", "kwargs", ")", ")", "except", ":", "cls", ".", "session", ".", "rollback", "(", ")", "raise" ]	24.052632	22.526316
def active_days(records): """ The number of days during which the user was active. A user is considered active if he sends a text, receives a text, initiates a call, receives a call, or has a mobility point. """ days = set(r.datetime.date() for r in records) return len(days)	[ "def", "active_days", "(", "records", ")", ":", "days", "=", "set", "(", "r", ".", "datetime", ".", "date", "(", ")", "for", "r", "in", "records", ")", "return", "len", "(", "days", ")" ]	37	15.5
def dump(self, o_name=None, details=False, raw=False): """Dump an host (all hosts) from the arbiter. The arbiter will get the host (all hosts) information from all its schedulers. This gets the main host information from the scheduler. If details is set, then some more information are ...	[ "def", "dump", "(", "self", ",", "o_name", "=", "None", ",", "details", "=", "False", ",", "raw", "=", "False", ")", ":", "if", "details", "is", "not", "False", ":", "details", "=", "bool", "(", "details", ")", "if", "raw", "is", "not", "False", ...	52.809091	27.809091
def internal_reset(self): """ internal state reset. used e.g. in unittests """ log.critical("PIA internal_reset()") self.empty_key_toggle = True self.current_input_char = None self.input_repead = 0	[ "def", "internal_reset", "(", "self", ")", ":", "log", ".", "critical", "(", "\"PIA internal_reset()\"", ")", "self", ".", "empty_key_toggle", "=", "True", "self", ".", "current_input_char", "=", "None", "self", ".", "input_repead", "=", "0" ]	28.111111	6.333333
def initQApplication(): """ Initializes the QtWidgets.QApplication instance. Creates one if it doesn't exist. Sets Argos specific attributes, such as the OrganizationName, so that the application persistent settings are read/written to the correct settings file/winreg. It is therefore impor...	[ "def", "initQApplication", "(", ")", ":", "# PyQtGraph recommends raster graphics system for OS-X.", "if", "'darwin'", "in", "sys", ".", "platform", ":", "graphicsSystem", "=", "\"raster\"", "# raster, native or opengl", "os", ".", "environ", ".", "setdefault", "(", "'Q...	45.777778	25.111111
def packet_xml(url_encoded_ivorn=None): """ Returns the XML packet contents stored for a given IVORN. The required IVORN should be appended to the URL after ``/xml/`` in :ref:`URL-encoded <url-encoding>` form. """ # Handle Apache / Debug server difference... # Apache conf must include the s...	[ "def", "packet_xml", "(", "url_encoded_ivorn", "=", "None", ")", ":", "# Handle Apache / Debug server difference...", "# Apache conf must include the setting::", "# AllowEncodedSlashes NoDecode", "# otherwise urlencoded paths have", "# double-slashes ('//') replaced with single-slashes ('/...	36.454545	15.727273
def getEffort(self, edgeID, time): """getEffort(string, double) -> double Returns the effort value used for (re-)routing which is valid on the edge at the given time. """ self._connection._beginMessage(tc.CMD_GET_EDGE_VARIABLE, tc.VAR_EDGE_EFFORT, ...	[ "def", "getEffort", "(", "self", ",", "edgeID", ",", "time", ")", ":", "self", ".", "_connection", ".", "_beginMessage", "(", "tc", ".", "CMD_GET_EDGE_VARIABLE", ",", "tc", ".", "VAR_EDGE_EFFORT", ",", "edgeID", ",", "1", "+", "4", ")", "self", ".", "_...	48.25	17.833333
def before_after_apply(self, before_fn, after_fn, leaf_fn=None): """Applies the functions to each node in a subtree using an traversal in which encountered twice: once right before its descendants, and once right after its last descendant """ stack = [self] while stack: ...	[ "def", "before_after_apply", "(", "self", ",", "before_fn", ",", "after_fn", ",", "leaf_fn", "=", "None", ")", ":", "stack", "=", "[", "self", "]", "while", "stack", ":", "node", "=", "stack", ".", "pop", "(", ")", "if", "node", ".", "is_leaf", ":", ...	37.75	12.9
def sample(self, num_samples=1000, hmc_iters=20): """ Sample the (unfixed) model parameters. :param num_samples: the number of samples to draw (1000 by default) :type num_samples: int :param hmc_iters: the number of leap-frog iterations (20 by default) :type hmc_...	[ "def", "sample", "(", "self", ",", "num_samples", "=", "1000", ",", "hmc_iters", "=", "20", ")", ":", "params", "=", "np", ".", "empty", "(", "(", "num_samples", ",", "self", ".", "p", ".", "size", ")", ")", "for", "i", "in", "range", "(", "num_s...	40	18.066667
def QWidget_factory(ui_file=None, args, kwargs): """ Defines a class factory creating `QWidget <http://doc.qt.nokia.com/qwidget.html>`_ classes using given ui file. :param ui_file: Ui file. :type ui_file: unicode :param \args: Arguments. :type \args: \ :param \\kwargs: Keywords ...	[ "def", "QWidget_factory", "(", "ui_file", "=", "None", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "file", "=", "ui_file", "or", "DEFAULT_UI_FILE", "if", "not", "foundations", ".", "common", ".", "path_exists", "(", "file", ")", ":", "raise", ...	27.834783	20.026087
def get_dict(self): """ Convert all rules to dict and return them. """ out = { property_name: getattr(self, property_name) for property_name in self._property_names } if "frequency" in out: out["frequency"] = int(out["frequency"]) ...	[ "def", "get_dict", "(", "self", ")", ":", "out", "=", "{", "property_name", ":", "getattr", "(", "self", ",", "property_name", ")", "for", "property_name", "in", "self", ".", "_property_names", "}", "if", "\"frequency\"", "in", "out", ":", "out", "[", "\...	24.846154	18.384615
def _module_name_from_previous_frame(num_frames_back): """ Returns the module name associated with a frame `num_frames_back` in the call stack. This function adds 1 to account for itself, so `num_frames_back` should be given relative to the caller. """ frm = inspect.stack()[num_frames_back + 1] ...	[ "def", "_module_name_from_previous_frame", "(", "num_frames_back", ")", ":", "frm", "=", "inspect", ".", "stack", "(", ")", "[", "num_frames_back", "+", "1", "]", "return", "inspect", ".", "getmodule", "(", "frm", "[", "0", "]", ")", ".", "__name__" ]	44.75	13
def load_rho(name, column): '''Load a datafile with rho structure like mag and phase ''' try: content = np.loadtxt(name, skiprows=1, usecols=([column])) except: raise ValueError('Given column to open does not exist.') return content	[ "def", "load_rho", "(", "name", ",", "column", ")", ":", "try", ":", "content", "=", "np", ".", "loadtxt", "(", "name", ",", "skiprows", "=", "1", ",", "usecols", "=", "(", "[", "column", "]", ")", ")", "except", ":", "raise", "ValueError", "(", ...	29	26.555556
def choose_ancestral_states_map(tree, feature, states): """ Chooses node ancestral states based on their marginal probabilities using MAP method. :param tree: ete3.Tree, the tree of interest :param feature: str, character for which the ancestral states are to be chosen :param states: numpy.array of...	[ "def", "choose_ancestral_states_map", "(", "tree", ",", "feature", ",", "states", ")", ":", "lh_feature", "=", "get_personalized_feature_name", "(", "feature", ",", "LH", ")", "allowed_state_feature", "=", "get_personalized_feature_name", "(", "feature", ",", "ALLOWED...	54.588235	28.823529
def single_queue_send( transport: 'UDPTransport', recipient: Address, queue: Queue_T, queue_identifier: QueueIdentifier, event_stop: Event, event_healthy: Event, event_unhealthy: Event, message_retries: int, message_retry_timeout: int, mess...	[ "def", "single_queue_send", "(", "transport", ":", "'UDPTransport'", ",", "recipient", ":", "Address", ",", "queue", ":", "Queue_T", ",", "queue_identifier", ":", "QueueIdentifier", ",", "event_stop", ":", "Event", ",", "event_healthy", ":", "Event", ",", "event...	29.831776	19.682243
def search(self, query, _or=False, ignores=[]): """Search word from FM-index Params: <str> \| <Sequential> query <bool> _or <list <str> > ignores Return: <list>SEARCH_RESULT(<int> document_id, <list <int> > counts ...	[ "def", "search", "(", "self", ",", "query", ",", "_or", "=", "False", ",", "ignores", "=", "[", "]", ")", ":", "if", "isinstance", "(", "query", ",", "str", ")", ":", "dids", "=", "MapIntInt", "(", "{", "}", ")", "self", ".", "fm", ".", "search...	37.861111	13.611111
def write_amendment(self, amendment_id, file_content, branch, author): """Given an amendment_id, temporary filename of content, branch and auth_info Deprecated but needed until we merge api local-dep to master... """ gh_user = branch.split('_amendment_')[0] msg = "Update Amendm...	[ "def", "write_amendment", "(", "self", ",", "amendment_id", ",", "file_content", ",", "branch", ",", "author", ")", ":", "gh_user", "=", "branch", ".", "split", "(", "'_amendment_'", ")", "[", "0", "]", "msg", "=", "\"Update Amendment '%s' via OpenTree API\"", ...	45.615385	16.692308
def is_transition_metal(self): """ True if element is a transition metal. """ ns = list(range(21, 31)) ns.extend(list(range(39, 49))) ns.append(57) ns.extend(list(range(72, 81))) ns.append(89) ns.extend(list(range(104, 113))) return self.Z ...	[ "def", "is_transition_metal", "(", "self", ")", ":", "ns", "=", "list", "(", "range", "(", "21", ",", "31", ")", ")", "ns", ".", "extend", "(", "list", "(", "range", "(", "39", ",", "49", ")", ")", ")", "ns", ".", "append", "(", "57", ")", "n...	28.636364	7.181818
def _report_volume_count(self): """Report volume count per state (dangling or not)""" m_func = FUNC_MAP[GAUGE][self.use_histogram] attached_volumes = self.docker_util.client.volumes(filters={'dangling': False}) dangling_volumes = self.docker_util.client.volumes(filters={'dangling': True...	[ "def", "_report_volume_count", "(", "self", ")", ":", "m_func", "=", "FUNC_MAP", "[", "GAUGE", "]", "[", "self", ".", "use_histogram", "]", "attached_volumes", "=", "self", ".", "docker_util", ".", "client", ".", "volumes", "(", "filters", "=", "{", "'dang...	64.1	31.8
def cleanup(self): """ Clean up the saved state. """ if os.path.exists(self.path): os.remove(self.path)	[ "def", "cleanup", "(", "self", ")", ":", "if", "os", ".", "path", ".", "exists", "(", "self", ".", "path", ")", ":", "os", ".", "remove", "(", "self", ".", "path", ")" ]	23.666667	6.666667
def split_model_idx(model:nn.Module, idxs:Collection[int])->ModuleList: "Split `model` according to the indexes in `idxs`." layers = flatten_model(model) if idxs[0] != 0: idxs = [0] + idxs if idxs[-1] != len(layers): idxs.append(len(layers)) return [nn.Sequential(*layers[i:j]) for i,j in zip(idxs[:-...	[ "def", "split_model_idx", "(", "model", ":", "nn", ".", "Module", ",", "idxs", ":", "Collection", "[", "int", "]", ")", "->", "ModuleList", ":", "layers", "=", "flatten_model", "(", "model", ")", "if", "idxs", "[", "0", "]", "!=", "0", ":", "idxs", ...	54.666667	17.666667
def append(self, row=None): """append(row=None) :param row: a list of values to apply to the newly append row or :obj:`None` :type row: [:obj:`object`] or :obj:`None` :returns: :obj:`Gtk.TreeIter` of the appended row :rtype: :obj:`Gtk.TreeIter` If `row` is :obj:`None` ...	[ "def", "append", "(", "self", ",", "row", "=", "None", ")", ":", "if", "row", ":", "return", "self", ".", "_do_insert", "(", "-", "1", ",", "row", ")", "# gtk_list_store_insert() does not know about the \"position == -1\"", "# case, so use append() here", "else", ...	35.086957	21.608696
def df_drop_duplicates(df, ignore_key_pattern="time"): """ Drop duplicates from dataframe ignore columns with keys containing defined pattern. :param df: :param noinfo_key_pattern: :return: """ keys_to_remove = list_contains(df.keys(), ignore_key_pattern) #key_tf = [key.find(noinfo_key...	[ "def", "df_drop_duplicates", "(", "df", ",", "ignore_key_pattern", "=", "\"time\"", ")", ":", "keys_to_remove", "=", "list_contains", "(", "df", ".", "keys", "(", ")", ",", "ignore_key_pattern", ")", "#key_tf = [key.find(noinfo_key_pattern) != -1 for key in df.keys()]", ...	27.421053	21.421053
def upper_bollinger_band(data, period, std_mult=2.0): """ Upper Bollinger Band. Formula: u_bb = SMA(t) + STD(SMA(t-n:t)) * std_mult """ catch_errors.check_for_period_error(data, period) period = int(period) simple_ma = sma(data, period)[period-1:] upper_bb = [] for idx in rang...	[ "def", "upper_bollinger_band", "(", "data", ",", "period", ",", "std_mult", "=", "2.0", ")", ":", "catch_errors", ".", "check_for_period_error", "(", "data", ",", "period", ")", "period", "=", "int", "(", "period", ")", "simple_ma", "=", "sma", "(", "data"...	27.789474	17.894737
def do_video(self, args): """Video management command demonstrates multiple layers of sub-commands being handled by AutoCompleter""" func = getattr(args, 'func', None) if func is not None: # Call whatever subcommand function was selected func(self, args) else: ...	[ "def", "do_video", "(", "self", ",", "args", ")", ":", "func", "=", "getattr", "(", "args", ",", "'func'", ",", "None", ")", "if", "func", "is", "not", "None", ":", "# Call whatever subcommand function was selected", "func", "(", "self", ",", "args", ")", ...	44.111111	12.111111
def _port_action_vxlan(self, port, segment, func): """Verify configuration and then process event.""" # If the segment is None, just log a warning message and return. if segment is None: self._log_missing_segment() return device_id = port.get('device_id') ...	[ "def", "_port_action_vxlan", "(", "self", ",", "port", ",", "segment", ",", "func", ")", ":", "# If the segment is None, just log a warning message and return.", "if", "segment", "is", "None", ":", "self", ".", "_log_missing_segment", "(", ")", "return", "device_id", ...	40.454545	17.909091
def policy_exists(policyName, region=None, key=None, keyid=None, profile=None): ''' Given a policy name, check to see if the given policy exists. Returns True if the given policy exists and returns False if the given policy does not exist. CLI Example: .. code-block:: bash ...	[ "def", "policy_exists", "(", "policyName", ",", "region", "=", "None", ",", "key", "=", "None", ",", "keyid", "=", "None", ",", "profile", "=", "None", ")", ":", "try", ":", "conn", "=", "_get_conn", "(", "region", "=", "region", ",", "key", "=", "...	29.76	24.88
def btc_tx_serialize(_txobj): """ Given a transaction dict returned by btc_tx_deserialize, convert it back into a hex-encoded byte string. Derived from code written by Vitalik Buterin in pybitcointools (https://github.com/vbuterin/pybitcointools) """ # output buffer o = [] txobj = ...	[ "def", "btc_tx_serialize", "(", "_txobj", ")", ":", "# output buffer", "o", "=", "[", "]", "txobj", "=", "None", "if", "encoding", ".", "json_is_base", "(", "_txobj", ",", "16", ")", ":", "# txobj is built from hex strings already. deserialize them ", "txobj", "=...	28.4125	23.8875
def srun_nodes(self): """Get list of nodes where to execute the command """ count = self.execution.get('srun_nodes', 0) if isinstance(count, six.string_types): tag = count count = 0 elif isinstance(count, SEQUENCES): return count else: ...	[ "def", "srun_nodes", "(", "self", ")", ":", "count", "=", "self", ".", "execution", ".", "get", "(", "'srun_nodes'", ",", "0", ")", "if", "isinstance", "(", "count", ",", "six", ".", "string_types", ")", ":", "tag", "=", "count", "count", "=", "0", ...	34.705882	10.941176
def get_language_data(self, qid, lang, lang_data_type): """ get language data for specified qid :param qid: :param lang: language code :param lang_data_type: 'label', 'description' or 'aliases' :return: list of strings If nothing is found: If lang_data...	[ "def", "get_language_data", "(", "self", ",", "qid", ",", "lang", ",", "lang_data_type", ")", ":", "self", ".", "init_language_data", "(", "lang", ",", "lang_data_type", ")", "current_lang_data", "=", "self", ".", "loaded_langs", "[", "lang", "]", "[", "lang...	41.210526	14.894737
def load_graphs(): '''load graphs from mavgraphs.xml''' mestate.graphs = [] gfiles = ['mavgraphs.xml'] if 'HOME' in os.environ: for dirname, dirnames, filenames in os.walk(os.path.join(os.environ['HOME'], ".mavproxy")): for filename in filenames: if filename.lower().e...	[ "def", "load_graphs", "(", ")", ":", "mestate", ".", "graphs", "=", "[", "]", "gfiles", "=", "[", "'mavgraphs.xml'", "]", "if", "'HOME'", "in", "os", ".", "environ", ":", "for", "dirname", ",", "dirnames", ",", "filenames", "in", "os", ".", "walk", "...	44.95122	19.439024
def initialize_fields(self): """ Convert all model fields to validator fields. Then call the parent so that overwrites can happen if necessary for manually defined fields. :return: None """ # # Pull all the "normal" fields off the model instance meta. for name, f...	[ "def", "initialize_fields", "(", "self", ")", ":", "# # Pull all the \"normal\" fields off the model instance meta.", "for", "name", ",", "field", "in", "self", ".", "instance", ".", "_meta", ".", "fields", ".", "items", "(", ")", ":", "if", "getattr", "(", "fie...	41.666667	20.809524
def plotConvergenceByColumnTopology(results, columnRange, featureRange, networkType, numTrials): """ Plots the convergence graph: iterations vs number of columns. Each curve shows the convergence for a given number of unique features. """ #######################################################################...	[ "def", "plotConvergenceByColumnTopology", "(", "results", ",", "columnRange", ",", "featureRange", ",", "networkType", ",", "numTrials", ")", ":", "########################################################################", "#", "# Accumulate all the results per column in a convergenc...	34.738462	22.676923
def parse_line(self, line): """Parses a single line of a GPI. Return a tuple `(processed_line, entities)`. Typically there will be a single entity, but in some cases there may be none (invalid line) or multiple (disjunctive clause in annotation extensions) Note: most ap...	[ "def", "parse_line", "(", "self", ",", "line", ")", ":", "vals", "=", "line", ".", "split", "(", "\"\\t\"", ")", "if", "len", "(", "vals", ")", "<", "7", ":", "self", ".", "report", ".", "error", "(", "line", ",", "assocparser", ".", "Report", "....	29.243902	21.170732
def get_physical_port(self): """Returns the link aggregation object or the ethernet port object.""" obj = None if self.is_link_aggregation(): obj = UnityLinkAggregation.get(self._cli, self.get_id()) else: obj = UnityEthernetPort.get(self._cli, self.get_id()) ...	[ "def", "get_physical_port", "(", "self", ")", ":", "obj", "=", "None", "if", "self", ".", "is_link_aggregation", "(", ")", ":", "obj", "=", "UnityLinkAggregation", ".", "get", "(", "self", ".", "_cli", ",", "self", ".", "get_id", "(", ")", ")", "else",...	40.75	17.25
def create_module(clear_target, target): """Creates a new template HFOS plugin module""" if os.path.exists(target): if clear_target: shutil.rmtree(target) else: log("Target exists! Use --clear to delete it first.", emitter='MANAGE') sys.exit(2...	[ "def", "create_module", "(", "clear_target", ",", "target", ")", ":", "if", "os", ".", "path", ".", "exists", "(", "target", ")", ":", "if", "clear_target", ":", "shutil", ".", "rmtree", "(", "target", ")", "else", ":", "log", "(", "\"Target exists! Use ...	27.347826	19.826087
def get_stack_frames(error_stack: bool = True) -> list: """ Returns a list of the current stack frames, which are pruned focus on the Cauldron code where the relevant information resides. """ cauldron_path = environ.paths.package() resources_path = environ.paths.resources() frames = ( ...	[ "def", "get_stack_frames", "(", "error_stack", ":", "bool", "=", "True", ")", "->", "list", ":", "cauldron_path", "=", "environ", ".", "paths", ".", "package", "(", ")", "resources_path", "=", "environ", ".", "paths", ".", "resources", "(", ")", "frames", ...	29.074074	21.814815
def analog_sensor_power(cls, bus, operation): """ Method that turns on all of the analog sensor modules Includes all attached soil moisture sensors Note that all of the SensorCluster object should be attached in parallel and only 1 GPIO pin is available ...	[ "def", "analog_sensor_power", "(", "cls", ",", "bus", ",", "operation", ")", ":", "# Set appropriate analog sensor power bit in GPIO mask\r", "# using the ControlCluster bank_mask to avoid overwriting any data\r", "reg_data", "=", "get_IO_reg", "(", "bus", ",", "0x20", ",", "...	53.52	20.88
def is_valid(self, wordid) -> bool: """ Ensures </s> is only generated when the hypothesis is completed. :param wordid: The wordid to validate. :return: True if all constraints are already met or the word ID is not the EOS id. """ return self.finished() or wordid != self...	[ "def", "is_valid", "(", "self", ",", "wordid", ")", "->", "bool", ":", "return", "self", ".", "finished", "(", ")", "or", "wordid", "!=", "self", ".", "eos_id", "or", "(", "self", ".", "num_needed", "(", ")", "==", "1", "and", "self", ".", "eos_id"...	47.75	26.25
def broadcast_variables(*variables): """Given any number of variables, return variables with matching dimensions and broadcast data. The data on the returned variables will be a view of the data on the corresponding original arrays, but dimensions will be reordered and inserted so that both broadca...	[ "def", "broadcast_variables", "(", "*", "variables", ")", ":", "dims_map", "=", "_unified_dims", "(", "variables", ")", "dims_tuple", "=", "tuple", "(", "dims_map", ")", "return", "tuple", "(", "var", ".", "set_dims", "(", "dims_map", ")", "if", "var", "."...	48.5	18.357143
def read_property_to_any(obj, propertyIdentifier, propertyArrayIndex=None): """Read the specified property of the object, with the optional array index, and cast the result into an Any object.""" if _debug: read_property_to_any._debug("read_property_to_any %s %r %r", obj, propertyIdentifier, propertyArrayIn...	[ "def", "read_property_to_any", "(", "obj", ",", "propertyIdentifier", ",", "propertyArrayIndex", "=", "None", ")", ":", "if", "_debug", ":", "read_property_to_any", ".", "_debug", "(", "\"read_property_to_any %s %r %r\"", ",", "obj", ",", "propertyIdentifier", ",", ...	45.425	23.875
def _parse_sequences(ilines, expect_qlen): """Parse the sequences in the current block. Sequence looks like: $3=227(209): >gi\|15606894\|ref\|NP_214275.1\| {\|2(244)\|<Aquificae(B)>}DNA polymerase III gamma subunit [Aquifex aeolicus VF5] >gi\|2984127\|gb\|AAC07663.1\| DNA polymerase III gamma subunit [Aquifex ...	[ "def", "_parse_sequences", "(", "ilines", ",", "expect_qlen", ")", ":", "while", "True", ":", "first", "=", "next", "(", "ilines", ")", "if", "first", ".", "startswith", "(", "'_'", ")", "and", "first", ".", "endswith", "(", "'].'", ")", ":", "# End of...	39.8125	21.921875
def logging_config(logpath=None, level=logging.DEBUG, console_level=logging.INFO, no_console=False): """ Config the logging. """ logger = logging.getLogger('nli') # Remove all the current handlers for handler in logger.handlers: lo...	[ "def", "logging_config", "(", "logpath", "=", "None", ",", "level", "=", "logging", ".", "DEBUG", ",", "console_level", "=", "logging", ".", "INFO", ",", "no_console", "=", "False", ")", ":", "logger", "=", "logging", ".", "getLogger", "(", "'nli'", ")",...	32.4	11.133333
def restore(self): """Restore the saved value for the attribute of the object.""" if self.proxy_object is None: if self.getter: setattr(self.getter_class, self.attr_name, self.getter) elif self.is_local: setattr(self.orig_object, self.attr_name, se...	[ "def", "restore", "(", "self", ")", ":", "if", "self", ".", "proxy_object", "is", "None", ":", "if", "self", ".", "getter", ":", "setattr", "(", "self", ".", "getter_class", ",", "self", ".", "attr_name", ",", "self", ".", "getter", ")", "elif", "sel...	43.5	15.642857
def make_name(text, delim=u'-', maxlength=50, checkused=None, counter=2): u""" Generate an ASCII name slug. If a checkused filter is provided, it will be called with the candidate. If it returns True, make_name will add counter numbers starting from 2 until a suitable candidate is found. :param str...	[ "def", "make_name", "(", "text", ",", "delim", "=", "u'-'", ",", "maxlength", "=", "50", ",", "checkused", "=", "None", ",", "counter", "=", "2", ")", ":", "name", "=", "text", ".", "replace", "(", "'@'", ",", "delim", ")", "name", "=", "unidecode"...	39.625	20.795455
def validate_fillna_kwargs(value, method, validate_scalar_dict_value=True): """Validate the keyword arguments to 'fillna'. This checks that exactly one of 'value' and 'method' is specified. If 'method' is specified, this validates that it's a valid method. Parameters ---------- value, method :...	[ "def", "validate_fillna_kwargs", "(", "value", ",", "method", ",", "validate_scalar_dict_value", "=", "True", ")", ":", "from", "pandas", ".", "core", ".", "missing", "import", "clean_fill_method", "if", "value", "is", "None", "and", "method", "is", "None", ":...	37.676471	23.882353
def check(self, request, secret): """Verifies whether or not the request bears an authorization appropriate and valid for this version of the signature. This verifies every element of the signature, including headers other than Authorization. Keyword arguments: request -- A request obje...	[ "def", "check", "(", "self", ",", "request", ",", "secret", ")", ":", "if", "request", ".", "get_header", "(", "\"Authorization\"", ")", "==", "\"\"", ":", "return", "False", "ah", "=", "self", ".", "parse_auth_headers", "(", "request", ".", "get_header", ...	47.4375	20.125
def setup_observations(self): """ main entry point for setting up observations """ obs_methods = [self.setup_water_budget_obs,self.setup_hyd, self.setup_smp,self.setup_hob,self.setup_hds, self.setup_sfr_obs] obs_types = ["mflist water budget...	[ "def", "setup_observations", "(", "self", ")", ":", "obs_methods", "=", "[", "self", ".", "setup_water_budget_obs", ",", "self", ".", "setup_hyd", ",", "self", ".", "setup_smp", ",", "self", ".", "setup_hob", ",", "self", ".", "setup_hds", ",", "self", "."...	45.571429	18.214286
def element_neighbors(self): """Return a list with element numbers (zero indexed) of neighboring elements. Note that the elements are not sorted. No spacial orientation can be inferred from the order of neighbors. WARNING: This function is slow due to a nested loop. This would be a ...	[ "def", "element_neighbors", "(", "self", ")", ":", "if", "self", ".", "element_neighbors_data", "is", "not", "None", ":", "return", "self", ".", "element_neighbors_data", "max_nr_edges", "=", "self", ".", "header", "[", "'element_infos'", "]", "[", "0", ",", ...	40	21.428571
def generate_url(query, first, recent, country_code): """(str, str) -> str A url in the required format is generated. """ query = '+'.join(query.split()) url = 'http://www.bing.com/search?q=' + query + '&first=' + first if recent in ['h', 'd', 'w', 'm', 'y']: # A True/False would be enough. This...	[ "def", "generate_url", "(", "query", ",", "first", ",", "recent", ",", "country_code", ")", ":", "query", "=", "'+'", ".", "join", "(", "query", ".", "split", "(", ")", ")", "url", "=", "'http://www.bing.com/search?q='", "+", "query", "+", "'&first='", "...	44.272727	16.545455
def create_table(group, name, dtype, attributes): """Create a new array dataset under group with compound datatype and maxshape=(None,)""" dset = group.create_dataset( name, shape=(0,), dtype=dtype, maxshape=(None,)) set_attributes(dset, attributes) return dset	[ "def", "create_table", "(", "group", ",", "name", ",", "dtype", ",", "", "", "attributes", ")", ":", "dset", "=", "group", ".", "create_dataset", "(", "name", ",", "shape", "=", "(", "0", ",", ")", ",", "dtype", "=", "dtype", ",", "maxshape", "="...	47.333333	10.333333
def decode_varint(f, max_bytes=4): """Decode variable integer using algorithm similar to that described in MQTT Version 3.1.1 line 297. Parameters ---------- f: file Object with a read method. max_bytes: int or None If a varint cannot be constructed using `max_bytes` or fewer ...	[ "def", "decode_varint", "(", "f", ",", "max_bytes", "=", "4", ")", ":", "num_bytes_consumed", "=", "0", "value", "=", "0", "m", "=", "1", "while", "True", ":", "buf", "=", "f", ".", "read", "(", "1", ")", "if", "len", "(", "buf", ")", "==", "0"...	24.784314	22.72549
def log_request(self, handler: RequestHandler) -> None: """Writes a completed HTTP request to the logs. By default writes to the python root logger. To change this behavior either subclass Application and override this method, or pass a function in the application settings dictionary a...	[ "def", "log_request", "(", "self", ",", "handler", ":", "RequestHandler", ")", "->", "None", ":", "if", "\"log_function\"", "in", "self", ".", "settings", ":", "self", ".", "settings", "[", "\"log_function\"", "]", "(", "handler", ")", "return", "if", "han...	37.166667	13.916667
def decode(model, tokens, start_token, end_token, pad_token, max_len=10000, max_repeat=10, max_repeat_block=10): """Decode with the given model and input tokens. :param model: The trained model. :param tokens: The input tokens of encoder. :param start_token: The token that represents the start of a sen...	[ "def", "decode", "(", "model", ",", "tokens", ",", "start_token", ",", "end_token", ",", "pad_token", ",", "max_len", "=", "10000", ",", "max_repeat", "=", "10", ",", "max_repeat_block", "=", "10", ")", ":", "is_single", "=", "not", "isinstance", "(", "t...	47.272727	19.022727
def find_python(): """Search for Python automatically""" python = ( _state.get("pythonExecutable") or # Support for multiple executables. next(( exe for exe in os.getenv("PYBLISH_QML_PYTHON_EXECUTABLE", "").split(os.pathsep) if os.path.isfile(exe)), N...	[ "def", "find_python", "(", ")", ":", "python", "=", "(", "_state", ".", "get", "(", "\"pythonExecutable\"", ")", "or", "# Support for multiple executables.", "next", "(", "(", "exe", "for", "exe", "in", "os", ".", "getenv", "(", "\"PYBLISH_QML_PYTHON_EXECUTABLE\...	26.047619	20.857143
def parse_bewit(bewit): """ Returns a `bewittuple` representing the parts of an encoded bewit string. This has the following named attributes: (id, expiration, mac, ext) :param bewit: A base64 encoded bewit string :type bewit: str """ decoded_bewit = b64decode(bewit).decode(...	[ "def", "parse_bewit", "(", "bewit", ")", ":", "decoded_bewit", "=", "b64decode", "(", "bewit", ")", ".", "decode", "(", "'ascii'", ")", "bewit_parts", "=", "decoded_bewit", ".", "split", "(", "\"\\\\\"", ")", "if", "len", "(", "bewit_parts", ")", "!=", "...	33.333333	14.4
def _HasOOOWrite(self, path): """Returns whether the path has had an out-of-order write.""" # Check the sizes of each path before the current one. size = tf.io.gfile.stat(path).length old_size = self._finalized_sizes.get(path, None) if size != old_size: if old_size is None: logger.erro...	[ "def", "_HasOOOWrite", "(", "self", ",", "path", ")", ":", "# Check the sizes of each path before the current one.", "size", "=", "tf", ".", "io", ".", "gfile", ".", "stat", "(", "path", ")", ".", "length", "old_size", "=", "self", ".", "_finalized_sizes", "."...	40.466667	18.266667
def create_config(config_path="scriptworker.yaml"): """Create a config from DEFAULT_CONFIG, arguments, and config file. Then validate it and freeze it. Args: config_path (str, optional): the path to the config file. Defaults to "scriptworker.yaml" Returns: tuple: (config ...	[ "def", "create_config", "(", "config_path", "=", "\"scriptworker.yaml\"", ")", ":", "if", "not", "os", ".", "path", ".", "exists", "(", "config_path", ")", ":", "print", "(", "\"{} doesn't exist! Exiting...\"", ".", "format", "(", "config_path", ")", ",", "fil...	32.457143	17.428571
def _generate_examples(self, images_dir_path, labels_path, setid_path, split_name): """Yields examples.""" with tf.io.gfile.GFile(labels_path, "rb") as f: labels = tfds.core.lazy_imports.scipy.io.loadmat(f)["labels"][0] with tf.io.gfile.GFile(setid_path, "rb") as f: exam...	[ "def", "_generate_examples", "(", "self", ",", "images_dir_path", ",", "labels_path", ",", "setid_path", ",", "split_name", ")", ":", "with", "tf", ".", "io", ".", "gfile", ".", "GFile", "(", "labels_path", ",", "\"rb\"", ")", "as", "f", ":", "labels", "...	40.6	17.666667
def write_out(self, message, verbosity_level=1): """ Convenient method for outputing. """ if self.verbosity and self.verbosity >= verbosity_level: sys.stdout.write(smart_str(message)) sys.stdout.flush()	[ "def", "write_out", "(", "self", ",", "message", ",", "verbosity_level", "=", "1", ")", ":", "if", "self", ".", "verbosity", "and", "self", ".", "verbosity", ">=", "verbosity_level", ":", "sys", ".", "stdout", ".", "write", "(", "smart_str", "(", "messag...	36	7.142857
def _html(self, text): '''Parse a Tweet and generate HTML.''' html = URL_REGEX.sub(self._parse_urls, text) html = USERNAME_REGEX.sub(self._parse_users, html) html = LIST_REGEX.sub(self._parse_lists, html) return HASHTAG_REGEX.sub(self._parse_tags, html)	[ "def", "_html", "(", "self", ",", "text", ")", ":", "html", "=", "URL_REGEX", ".", "sub", "(", "self", ".", "_parse_urls", ",", "text", ")", "html", "=", "USERNAME_REGEX", ".", "sub", "(", "self", ".", "_parse_users", ",", "html", ")", "html", "=", ...	48	14
def is_subclass(ch, ns, super_class, sub): """Determine if one class is a subclass of another class. Parameters: ch: A CIMOMHandle. Either a pycimmb.CIMOMHandle or a :class:`~pywbem.WBEMConnection` object. ns (:term:`string`): Namespace (case independent). super_cl...	[ "def", "is_subclass", "(", "ch", ",", "ns", ",", "super_class", ",", "sub", ")", ":", "lsuper", "=", "super_class", ".", "lower", "(", ")", "if", "isinstance", "(", "sub", ",", "CIMClass", ")", ":", "subname", "=", "sub", ".", "classname", "subclass", ...	31.826923	17.134615
def _rotations_to_disentangle(local_param): """ Static internal method to work out Ry and Rz rotation angles used to disentangle the LSB qubit. These rotations make up the block diagonal matrix U (i.e. multiplexor) that disentangles the LSB. [[Ry(theta_1).Rz(phi_1) 0 ...	[ "def", "_rotations_to_disentangle", "(", "local_param", ")", ":", "remaining_vector", "=", "[", "]", "thetas", "=", "[", "]", "phis", "=", "[", "]", "param_len", "=", "len", "(", "local_param", ")", "for", "i", "in", "range", "(", "param_len", "//", "2",...	36.945946	19
def readNamelist(namFilename, unique_glyphs=False, cache=None): """ Args: namFilename: The path to the Namelist file. unique_glyphs: Optional, whether to only include glyphs unique to subset. cache: Optional, a dict used to cache loaded Namelist files Returns: A dict with following keys: "fileNa...	[ "def", "readNamelist", "(", "namFilename", ",", "unique_glyphs", "=", "False", ",", "cache", "=", "None", ")", ":", "currentlyIncluding", "=", "set", "(", ")", "if", "not", "cache", ":", "cache", "=", "{", "}", "return", "_readNamelist", "(", "currentlyInc...	40.233333	21.5
def get_seqstr(config, metadata): """ Extract and reformat imaging sequence(s) and variant(s) into pretty strings. Parameters ---------- config : :obj:`dict` A dictionary with relevant information regarding sequences, sequence variants, phase encoding directions, and task names....	[ "def", "get_seqstr", "(", "config", ",", "metadata", ")", ":", "seq_abbrs", "=", "metadata", ".", "get", "(", "'ScanningSequence'", ",", "''", ")", ".", "split", "(", "'_'", ")", "seqs", "=", "[", "config", "[", "'seq'", "]", ".", "get", "(", "seq", ...	31.551724	19.482759
def impute(self, vars: dict, replace: bool = False, prefix: str = 'imp_', out: 'SASdata' = None) -> 'SASdata': """ Imputes missing values for a SASdata object. :param vars: a dictionary in the form of {'varname':'impute type'} or {'impute type':'[var1, var2]'} :param replace: :p...	[ "def", "impute", "(", "self", ",", "vars", ":", "dict", ",", "replace", ":", "bool", "=", "False", ",", "prefix", ":", "str", "=", "'imp_'", ",", "out", ":", "'SASdata'", "=", "None", ")", "->", "'SASdata'", ":", "outstr", "=", "''", "if", "out", ...	44.26087	21.617391
def compute_K_L_alpha_ll(self): r"""Compute `K`, `L`, `alpha` and log-likelihood according to the first part of Algorithm 2.1 in R&W. Computes `K` and the noise portion of `K` using :py:meth:`compute_Kij`, computes `L` using :py:func:`scipy.linalg.cholesky`, then computes `alpha...	[ "def", "compute_K_L_alpha_ll", "(", "self", ")", ":", "if", "not", "self", ".", "K_up_to_date", ":", "y", "=", "self", ".", "y", "err_y", "=", "self", ".", "err_y", "self", ".", "K", "=", "self", ".", "compute_Kij", "(", "self", ".", "X", ",", "Non...	50.371429	22.314286
def rcts(self, command, args, *kwargs): '''General function for applying a rolling R function to a timeserie''' cls = self.__class__ name = kwargs.pop('name','') date = kwargs.pop('date',None) data = kwargs.pop('data',None) kwargs.pop('bycolumn',None) ts ...	[ "def", "rcts", "(", "self", ",", "command", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "cls", "=", "self", ".", "__class__", "name", "=", "kwargs", ".", "pop", "(", "'name'", ",", "''", ")", "date", "=", "kwargs", ".", "pop", "(", "'d...	41.9	10.5
def update(self): """Once you open a dataset, it activates all the widgets. """ self.info.display_dataset() self.overview.update() self.labels.update(labels=self.info.dataset.header['chan_name']) self.channels.update() try: self.info.markers = self.in...	[ "def", "update", "(", "self", ")", ":", "self", ".", "info", ".", "display_dataset", "(", ")", "self", ".", "overview", ".", "update", "(", ")", "self", ".", "labels", ".", "update", "(", "labels", "=", "self", ".", "info", ".", "dataset", ".", "he...	35.785714	17.5
def image_size(self, pnmfile): """Get width and height of pnm file. simeon@homebox src>pnmfile /tmp/214-2.png /tmp/214-2.png:PPM raw, 100 by 100 maxval 255 """ pout = os.popen(self.shellsetup + self.pnmfile + ' ' + pnmfile, 'r') pnmfileout = pout.read(200) pout....	[ "def", "image_size", "(", "self", ",", "pnmfile", ")", ":", "pout", "=", "os", ".", "popen", "(", "self", ".", "shellsetup", "+", "self", ".", "pnmfile", "+", "' '", "+", "pnmfile", ",", "'r'", ")", "pnmfileout", "=", "pout", ".", "read", "(", "200...	37	15.055556
def register_lazy_provider_method(self, cls, method): """ Register a class method lazily as a provider. """ if 'provides' not in getattr(method, '__di__', {}): raise DiayException('method %r is not a provider' % method) @functools.wraps(method) def wrapper(*a...	[ "def", "register_lazy_provider_method", "(", "self", ",", "cls", ",", "method", ")", ":", "if", "'provides'", "not", "in", "getattr", "(", "method", ",", "'__di__'", ",", "{", "}", ")", ":", "raise", "DiayException", "(", "'method %r is not a provider'", "%", ...	38.416667	18.416667
def pip_upgrade_all_user(line): """Attempt to upgrade all packages installed with --user""" import pip for dist in pip.get_installed_distributions(user_only=True): do_pip(["install", "--upgrade", "--user", dist.project_name])	[ "def", "pip_upgrade_all_user", "(", "line", ")", ":", "import", "pip", "for", "dist", "in", "pip", ".", "get_installed_distributions", "(", "user_only", "=", "True", ")", ":", "do_pip", "(", "[", "\"install\"", ",", "\"--upgrade\"", ",", "\"--user\"", ",", "...	48.2	17.6
def register_regex_entity(self, regex_str): """ A regular expression making use of python named group expressions. Example: (?P<Artist>.*) regex_str(str): a string representing a regular expression as defined above """ if regex_str and regex_str not in self._regex_strin...	[ "def", "register_regex_entity", "(", "self", ",", "regex_str", ")", ":", "if", "regex_str", "and", "regex_str", "not", "in", "self", ".", "_regex_strings", ":", "self", ".", "_regex_strings", ".", "add", "(", "regex_str", ")", "self", ".", "regular_expressions...	41	22.454545
def get_full_description(self, s, base=None): """Get the full description from a docstring This here and the line above is the full description (i.e. the combination of the :meth:`get_summary` and the :meth:`get_extended_summary`) output Parameters ---------- s:...	[ "def", "get_full_description", "(", "self", ",", "s", ",", "base", "=", "None", ")", ":", "summary", "=", "self", ".", "get_summary", "(", "s", ")", "extended_summary", "=", "self", ".", "get_extended_summary", "(", "s", ")", "ret", "=", "(", "summary", ...	34.814815	20.185185
def build_doctype(qualifiedName, publicId=None, systemId=None, internalSubset=None): """ Instantiate an ElifeDocumentType, a subclass of minidom.DocumentType, with some properties so it is more testable """ doctype = ElifeDocumentType(qualifiedName) doctype._identified_mixin_init(publicId, syste...	[ "def", "build_doctype", "(", "qualifiedName", ",", "publicId", "=", "None", ",", "systemId", "=", "None", ",", "internalSubset", "=", "None", ")", ":", "doctype", "=", "ElifeDocumentType", "(", "qualifiedName", ")", "doctype", ".", "_identified_mixin_init", "(",...	40.5	15.1
def register_service(service): """ Register the ryu application specified by 'service' as a provider of events defined in the calling module. If an application being loaded consumes events (in the sense of set_ev_cls) provided by the 'service' application, the latter application will be automat...	[ "def", "register_service", "(", "service", ")", ":", "frame", "=", "inspect", ".", "currentframe", "(", ")", "m_name", "=", "frame", ".", "f_back", ".", "f_globals", "[", "'__name__'", "]", "m", "=", "sys", ".", "modules", "[", "m_name", "]", "m", ".",...	36.75	15.875
def getInferenceTypeFromLabel(cls, label): """ Extracts the PredictionKind (temporal vs. nontemporal) from the given metric label. :param label: (string) for a metric spec generated by :meth:`getMetricLabel` :returns: (:class:`~nupic.frameworks.opf.opf_utils.InferenceType`) """ ...	[ "def", "getInferenceTypeFromLabel", "(", "cls", ",", "label", ")", ":", "infType", ",", "_", ",", "_", "=", "label", ".", "partition", "(", "cls", ".", "_LABEL_SEPARATOR", ")", "if", "not", "InferenceType", ".", "validate", "(", "infType", ")", ":", "ret...	27.625	21.0625
def annotate_and_optimize_ast( parsed_ast: ast.Module, source_code: str, class_types: Optional[ClassTypes] = None, ) -> None: """ Performs annotation and optimization on a parsed python AST by doing the following: * Annotating all AST nodes with the originating source code of the AST * ...	[ "def", "annotate_and_optimize_ast", "(", "parsed_ast", ":", "ast", ".", "Module", ",", "source_code", ":", "str", ",", "class_types", ":", "Optional", "[", "ClassTypes", "]", "=", "None", ",", ")", "->", "None", ":", "AnnotatingVisitor", "(", "source_code", ...	39.409091	19.5
def execute_commands(self, mapping, args, *kwargs): """Concurrently executes a sequence of commands on a Redis cluster that are associated with a routing key, returning a new mapping where values are a list of results that correspond to the command in the same position. For example:: ...	[ "def", "execute_commands", "(", "self", ",", "mapping", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "def", "is_script_command", "(", "command", ")", ":", "return", "isinstance", "(", "command", "[", "0", "]", ",", "Script", ")", "def", "check_...	45.104167	21.770833
def is_rdemo(file_name): """ Return True if file_name matches a regexp for an R demo. False otherwise. :param file_name: file to test """ packaged_demos = ["h2o.anomaly.R", "h2o.deeplearning.R", "h2o.gbm.R", "h2o.glm.R", "h2o.glrm.R", "h2o.kmeans.R", "h2o.naiveBayes.R", "h2o.p...	[ "def", "is_rdemo", "(", "file_name", ")", ":", "packaged_demos", "=", "[", "\"h2o.anomaly.R\"", ",", "\"h2o.deeplearning.R\"", ",", "\"h2o.gbm.R\"", ",", "\"h2o.glm.R\"", ",", "\"h2o.glrm.R\"", ",", "\"h2o.kmeans.R\"", ",", "\"h2o.naiveBayes.R\"", ",", "\"h2o.prcomp.R\"...	47.3	23.1
def readAt(self, offset, size): """ Reads as many bytes indicated in the size parameter at the specific offset. @type offset: int @param offset: Offset of the value to be read. @type size: int @param size: This parameter indicates how many bytes are going to be read fro...	[ "def", "readAt", "(", "self", ",", "offset", ",", "size", ")", ":", "if", "offset", ">", "self", ".", "length", ":", "if", "self", ".", "log", ":", "print", "\"Warning: Trying to read: %d bytes - only %d bytes left\"", "%", "(", "nroBytes", ",", "self", ".",...	34.954545	22.590909
def is_contradictory(self, other): """ Can these two strings coexist ? """ other = StringCell.coerce(other) if self.value is None or other.value is None: # None = empty, and won't contradict anything return False def sequence_in(s1, s2): ...	[ "def", "is_contradictory", "(", "self", ",", "other", ")", ":", "other", "=", "StringCell", ".", "coerce", "(", "other", ")", "if", "self", ".", "value", "is", "None", "or", "other", ".", "value", "is", "None", ":", "# None = empty, and won't contradict anyt...	32.625	14.1875
def GetFileEntryByPathSpec(self, path_spec): """Retrieves a file entry for a path specification. Args: path_spec (PathSpec): path specification of the file entry. Returns: ZipFileEntry: a file entry or None. """ if not self.FileEntryExistsByPathSpec(path_spec): return None l...	[ "def", "GetFileEntryByPathSpec", "(", "self", ",", "path_spec", ")", ":", "if", "not", "self", ".", "FileEntryExistsByPathSpec", "(", "path_spec", ")", ":", "return", "None", "location", "=", "getattr", "(", "path_spec", ",", "'location'", ",", "None", ")", ...	27.666667	20.555556
def _decode_exp(self, access_token=None): """Extract exp field from access token. Args: access_token (str): Access token to decode. Defaults to ``None``. Returns: int: JWT expiration in epoch seconds. """ c = self.get_credentials() jwt = access_...	[ "def", "_decode_exp", "(", "self", ",", "access_token", "=", "None", ")", ":", "c", "=", "self", ".", "get_credentials", "(", ")", "jwt", "=", "access_token", "or", "c", ".", "access_token", "x", "=", "self", ".", "decode_jwt_payload", "(", "jwt", ")", ...	29.12	17.84
def copy_pkg(self, filename, id_=-1): """Copy a pkg, dmg, or zip to all repositories. Args: filename: String path to the local file to copy. id_: Integer ID you wish to associate package with for a JDS or CDP only. Default is -1, which is used for creating ...	[ "def", "copy_pkg", "(", "self", ",", "filename", ",", "id_", "=", "-", "1", ")", ":", "for", "repo", "in", "self", ".", "_children", ":", "repo", ".", "copy_pkg", "(", "filename", ",", "id_", ")" ]	40.545455	15.454545
def get_bundle_imported_services(self, bundle): """ Returns this bundle's ServiceReference list for all services it is using or returns None if this bundle is not using any services. A bundle is considered to be using a service if its use count for that service is greater than ze...	[ "def", "get_bundle_imported_services", "(", "self", ",", "bundle", ")", ":", "with", "self", ".", "__svc_lock", ":", "return", "sorted", "(", "self", ".", "__bundle_imports", ".", "get", "(", "bundle", ",", "[", "]", ")", ")" ]	45.3125	21.1875
def _cache_ops_associate(protocol, msgtype): """https://github.com/thom311/libnl/blob/libnl3_2_25/lib/cache_mngt.c#L111. Positional arguments: protocol -- Netlink protocol (integer). msgtype -- Netlink message type (integer). Returns: nl_cache_ops instance with matching protocol containing mat...	[ "def", "_cache_ops_associate", "(", "protocol", ",", "msgtype", ")", ":", "ops", "=", "cache_ops", "while", "ops", ":", "# Loop until `ops` is None.", "if", "ops", ".", "co_protocol", "==", "protocol", ":", "for", "co_msgtype", "in", "ops", ".", "co_msgtypes", ...	33.611111	14.944444
def parse_config(f): """ Load an yml-formatted configuration from file stream \|f\| :param file f: Where to read the config. """ try: c = yaml.safe_load(f) for section_name, section in c.items(): group = get_group(section_name) for key, val in section.items()...	[ "def", "parse_config", "(", "f", ")", ":", "try", ":", "c", "=", "yaml", ".", "safe_load", "(", "f", ")", "for", "section_name", ",", "section", "in", "c", ".", "items", "(", ")", ":", "group", "=", "get_group", "(", "section_name", ")", "for", "ke...	33.052632	18.526316
def p_retry_option(p): """ retry_option : LIMIT COLON NUMBER \| DELAY COLON IDENTIFIER OPEN_BRACKET NUMBER CLOSE_BRACKET """ if len(p) == 4: p[0] = {"limit": int(p[3]) } elif len(p) == 7: p[0] = {"delay": Delay(int(p[5]), p[3])} else: raise RuntimeError("I...	[ "def", "p_retry_option", "(", "p", ")", ":", "if", "len", "(", "p", ")", "==", "4", ":", "p", "[", "0", "]", "=", "{", "\"limit\"", ":", "int", "(", "p", "[", "3", "]", ")", "}", "elif", "len", "(", "p", ")", "==", "7", ":", "p", "[", "...	31.545455	15
def components(self): '''The period string''' p = '' neg = self.totaldays < 0 y = self.years m = self.months w = self.weeks d = self.days if y: p = '%sY' % abs(y) if m: p = '%s%sM' % (p, abs(m)) if w: p =...	[ "def", "components", "(", "self", ")", ":", "p", "=", "''", "neg", "=", "self", ".", "totaldays", "<", "0", "y", "=", "self", ".", "years", "m", "=", "self", ".", "months", "w", "=", "self", ".", "weeks", "d", "=", "self", ".", "days", "if", ...	24.294118	15.705882
def _validate_jp2h(self, boxes): """Validate the JP2 Header box.""" self._check_jp2h_child_boxes(boxes, 'top-level') jp2h_lst = [box for box in boxes if box.box_id == 'jp2h'] jp2h = jp2h_lst[0] # 1st jp2 header box cannot be empty. if len(jp2h.box) == 0: msg...	[ "def", "_validate_jp2h", "(", "self", ",", "boxes", ")", ":", "self", ".", "_check_jp2h_child_boxes", "(", "boxes", ",", "'top-level'", ")", "jp2h_lst", "=", "[", "box", "for", "box", "in", "boxes", "if", "box", ".", "box_id", "==", "'jp2h'", "]", "jp2h"...	36.259259	17.148148
def show_search_results( log_rec, code_view=True, json_view=False, show_message_details=False): """show_search_results Show search results like rsyslog or as pretty-printed JSON dictionaries per log for debugging drill-down fields :param log_rec: log record from splunk ...	[ "def", "show_search_results", "(", "log_rec", ",", "code_view", "=", "True", ",", "json_view", "=", "False", ",", "show_message_details", "=", "False", ")", ":", "log_dict", "=", "None", "try", ":", "log_dict", "=", "json", ".", "loads", "(", "log_rec", ")...	27.513158	15.138158
def initialise_modified_data(self): """ Initialise the modified_data if necessary """ if self.__modified_data__ is None: if self.__original_data__: self.__modified_data__ = list(self.__original_data__) else: self.__modified_data__ =...	[ "def", "initialise_modified_data", "(", "self", ")", ":", "if", "self", ".", "__modified_data__", "is", "None", ":", "if", "self", ".", "__original_data__", ":", "self", ".", "__modified_data__", "=", "list", "(", "self", ".", "__original_data__", ")", "else",...	35	8.111111
def ReadAllClientLabels(self, cursor=None): """Reads the user labels for a list of clients.""" cursor.execute("SELECT DISTINCT owner_username, label FROM client_labels") result = [] for owner, label in cursor.fetchall(): result.append(rdf_objects.ClientLabel(name=label, owner=owner)) result...	[ "def", "ReadAllClientLabels", "(", "self", ",", "cursor", "=", "None", ")", ":", "cursor", ".", "execute", "(", "\"SELECT DISTINCT owner_username, label FROM client_labels\"", ")", "result", "=", "[", "]", "for", "owner", ",", "label", "in", "cursor", ".", "fetc...	34.363636	23.636364
def Emulation_setEmulatedMedia(self, media): """ Function path: Emulation.setEmulatedMedia Domain: Emulation Method name: setEmulatedMedia Parameters: Required arguments: 'media' (type: string) -> Media type to emulate. Empty string disables the override. No return value. Description: ...	[ "def", "Emulation_setEmulatedMedia", "(", "self", ",", "media", ")", ":", "assert", "isinstance", "(", "media", ",", "(", "str", ",", ")", ")", ",", "\"Argument 'media' must be of type '['str']'. Received type: '%s'\"", "%", "type", "(", "media", ")", "subdom_funcs"...	31.473684	20.842105
def _new(self, dx_hash, **kwargs): ''' :param dx_hash: Standard hash populated in :func:`dxpy.bindings.DXDataObject.new()` containing attributes common to all data object classes. :type dx_hash: dict :param runSpec: Run specification :type runSpec: dict :param dxapi: API ...	[ "def", "_new", "(", "self", ",", "dx_hash", ",", "", "", "kwargs", ")", ":", "for", "field", "in", "'runSpec'", ",", "'dxapi'", ":", "if", "field", "not", "in", "kwargs", ":", "raise", "DXError", "(", "\"%s: Keyword argument %s is required\"", "%", "(", ...	44.422222	21.444444
def extract_date(cls, date_str): """ Tries to extract a `datetime` object from the given string, expecting date information only. Raises `DateTimeFormatterException` if the extraction fails. """ if not date_str: raise DateTimeFormatterException('date_str must...	[ "def", "extract_date", "(", "cls", ",", "date_str", ")", ":", "if", "not", "date_str", ":", "raise", "DateTimeFormatterException", "(", "'date_str must a valid string {}.'", ".", "format", "(", "date_str", ")", ")", "try", ":", "return", "cls", ".", "_extract_ti...	39.785714	24.357143
def generate_docs(self, clspath, more_content): """Generate documentation for this configman class""" obj = import_class(clspath) sourcename = 'docstring of %s' % clspath all_options = [] indent = ' ' config = obj.get_required_config() if config.options: ...	[ "def", "generate_docs", "(", "self", ",", "clspath", ",", "more_content", ")", ":", "obj", "=", "import_class", "(", "clspath", ")", "sourcename", "=", "'docstring of %s'", "%", "clspath", "all_options", "=", "[", "]", "indent", "=", "' '", "config", "=",...	41.22619	18.309524
def mark_deactivated(self,request,queryset): """An admin action for marking several cages as inactive. This action sets the selected cages as Active=False and Death=today. This admin action also shows as the output the number of mice sacrificed.""" rows_updated = queryset.update(Activ...	[ "def", "mark_deactivated", "(", "self", ",", "request", ",", "queryset", ")", ":", "rows_updated", "=", "queryset", ".", "update", "(", "Active", "=", "False", ",", "End", "=", "datetime", ".", "date", ".", "today", "(", ")", ")", "if", "rows_updated", ...	52.454545	20.363636
def limit(self, maximum): """ Return a new query, limited to a certain number of results. Unlike core reporting queries, you cannot specify a starting point for live queries, just the maximum results returned. ```python # first 50 query.limit(50) ``` ...	[ "def", "limit", "(", "self", ",", "maximum", ")", ":", "self", ".", "meta", "[", "'limit'", "]", "=", "maximum", "self", ".", "raw", ".", "update", "(", "{", "'max_results'", ":", "maximum", ",", "}", ")", "return", "self" ]	24.555556	21.222222

def create(cls, **kwargs): """Initializes a new instance, adds it to the db and commits the transaction. Args: **kwargs: The keyword arguments for the init constructor. Examples: >>> user = User.create(name="Vicky", email="vicky@h.com") >>> user.id...

[ "def", "create", "(", "cls", ",", "*", "*", "kwargs", ")", ":", "try", ":", "return", "cls", ".", "add", "(", "cls", ".", "new", "(", "*", "*", "kwargs", ")", ")", "except", ":", "cls", ".", "session", ".", "rollback", "(", ")", "raise" ]

24.052632

22.526316

def active_days(records): """ The number of days during which the user was active. A user is considered active if he sends a text, receives a text, initiates a call, receives a call, or has a mobility point. """ days = set(r.datetime.date() for r in records) return len(days)

[ "def", "active_days", "(", "records", ")", ":", "days", "=", "set", "(", "r", ".", "datetime", ".", "date", "(", ")", "for", "r", "in", "records", ")", "return", "len", "(", "days", ")" ]

37

15.5

def dump(self, o_name=None, details=False, raw=False): """Dump an host (all hosts) from the arbiter. The arbiter will get the host (all hosts) information from all its schedulers. This gets the main host information from the scheduler. If details is set, then some more information are ...

[ "def", "dump", "(", "self", ",", "o_name", "=", "None", ",", "details", "=", "False", ",", "raw", "=", "False", ")", ":", "if", "details", "is", "not", "False", ":", "details", "=", "bool", "(", "details", ")", "if", "raw", "is", "not", "False", ...

52.809091

27.809091

def internal_reset(self): """ internal state reset. used e.g. in unittests """ log.critical("PIA internal_reset()") self.empty_key_toggle = True self.current_input_char = None self.input_repead = 0

[ "def", "internal_reset", "(", "self", ")", ":", "log", ".", "critical", "(", "\"PIA internal_reset()\"", ")", "self", ".", "empty_key_toggle", "=", "True", "self", ".", "current_input_char", "=", "None", "self", ".", "input_repead", "=", "0" ]

28.111111

6.333333

def initQApplication(): """ Initializes the QtWidgets.QApplication instance. Creates one if it doesn't exist. Sets Argos specific attributes, such as the OrganizationName, so that the application persistent settings are read/written to the correct settings file/winreg. It is therefore impor...

[ "def", "initQApplication", "(", ")", ":", "# PyQtGraph recommends raster graphics system for OS-X.", "if", "'darwin'", "in", "sys", ".", "platform", ":", "graphicsSystem", "=", "\"raster\"", "# raster, native or opengl", "os", ".", "environ", ".", "setdefault", "(", "'Q...

45.777778

25.111111

def packet_xml(url_encoded_ivorn=None): """ Returns the XML packet contents stored for a given IVORN. The required IVORN should be appended to the URL after ``/xml/`` in :ref:`URL-encoded <url-encoding>` form. """ # Handle Apache / Debug server difference... # Apache conf must include the s...

[ "def", "packet_xml", "(", "url_encoded_ivorn", "=", "None", ")", ":", "# Handle Apache / Debug server difference...", "# Apache conf must include the setting::", "# AllowEncodedSlashes NoDecode", "# otherwise urlencoded paths have", "# double-slashes ('//') replaced with single-slashes ('/...

36.454545

15.727273

def getEffort(self, edgeID, time): """getEffort(string, double) -> double Returns the effort value used for (re-)routing which is valid on the edge at the given time. """ self._connection._beginMessage(tc.CMD_GET_EDGE_VARIABLE, tc.VAR_EDGE_EFFORT, ...

[ "def", "getEffort", "(", "self", ",", "edgeID", ",", "time", ")", ":", "self", ".", "_connection", ".", "_beginMessage", "(", "tc", ".", "CMD_GET_EDGE_VARIABLE", ",", "tc", ".", "VAR_EDGE_EFFORT", ",", "edgeID", ",", "1", "+", "4", ")", "self", ".", "_...

48.25

17.833333

def before_after_apply(self, before_fn, after_fn, leaf_fn=None): """Applies the functions to each node in a subtree using an traversal in which encountered twice: once right before its descendants, and once right after its last descendant """ stack = [self] while stack: ...

[ "def", "before_after_apply", "(", "self", ",", "before_fn", ",", "after_fn", ",", "leaf_fn", "=", "None", ")", ":", "stack", "=", "[", "self", "]", "while", "stack", ":", "node", "=", "stack", ".", "pop", "(", ")", "if", "node", ".", "is_leaf", ":", ...

37.75

12.9

def sample(self, num_samples=1000, hmc_iters=20): """ Sample the (unfixed) model parameters. :param num_samples: the number of samples to draw (1000 by default) :type num_samples: int :param hmc_iters: the number of leap-frog iterations (20 by default) :type hmc_...

[ "def", "sample", "(", "self", ",", "num_samples", "=", "1000", ",", "hmc_iters", "=", "20", ")", ":", "params", "=", "np", ".", "empty", "(", "(", "num_samples", ",", "self", ".", "p", ".", "size", ")", ")", "for", "i", "in", "range", "(", "num_s...

40

18.066667

def QWidget_factory(ui_file=None, *args, **kwargs): """ Defines a class factory creating `QWidget <http://doc.qt.nokia.com/qwidget.html>`_ classes using given ui file. :param ui_file: Ui file. :type ui_file: unicode :param \*args: Arguments. :type \*args: \* :param \*\*kwargs: Keywords ...

[ "def", "QWidget_factory", "(", "ui_file", "=", "None", ",", "*", "args", ",", "*", "*", "kwargs", ")", ":", "file", "=", "ui_file", "or", "DEFAULT_UI_FILE", "if", "not", "foundations", ".", "common", ".", "path_exists", "(", "file", ")", ":", "raise", ...

27.834783

20.026087

def get_dict(self): """ Convert all rules to dict and return them. """ out = { property_name: getattr(self, property_name) for property_name in self._property_names } if "frequency" in out: out["frequency"] = int(out["frequency"]) ...

[ "def", "get_dict", "(", "self", ")", ":", "out", "=", "{", "property_name", ":", "getattr", "(", "self", ",", "property_name", ")", "for", "property_name", "in", "self", ".", "_property_names", "}", "if", "\"frequency\"", "in", "out", ":", "out", "[", "\...

24.846154

18.384615

def _module_name_from_previous_frame(num_frames_back): """ Returns the module name associated with a frame `num_frames_back` in the call stack. This function adds 1 to account for itself, so `num_frames_back` should be given relative to the caller. """ frm = inspect.stack()[num_frames_back + 1] ...

[ "def", "_module_name_from_previous_frame", "(", "num_frames_back", ")", ":", "frm", "=", "inspect", ".", "stack", "(", ")", "[", "num_frames_back", "+", "1", "]", "return", "inspect", ".", "getmodule", "(", "frm", "[", "0", "]", ")", ".", "__name__" ]

44.75

13

def load_rho(name, column): '''Load a datafile with rho structure like mag and phase ''' try: content = np.loadtxt(name, skiprows=1, usecols=([column])) except: raise ValueError('Given column to open does not exist.') return content

[ "def", "load_rho", "(", "name", ",", "column", ")", ":", "try", ":", "content", "=", "np", ".", "loadtxt", "(", "name", ",", "skiprows", "=", "1", ",", "usecols", "=", "(", "[", "column", "]", ")", ")", "except", ":", "raise", "ValueError", "(", ...

29

26.555556

def choose_ancestral_states_map(tree, feature, states): """ Chooses node ancestral states based on their marginal probabilities using MAP method. :param tree: ete3.Tree, the tree of interest :param feature: str, character for which the ancestral states are to be chosen :param states: numpy.array of...

[ "def", "choose_ancestral_states_map", "(", "tree", ",", "feature", ",", "states", ")", ":", "lh_feature", "=", "get_personalized_feature_name", "(", "feature", ",", "LH", ")", "allowed_state_feature", "=", "get_personalized_feature_name", "(", "feature", ",", "ALLOWED...

54.588235

28.823529

def single_queue_send( transport: 'UDPTransport', recipient: Address, queue: Queue_T, queue_identifier: QueueIdentifier, event_stop: Event, event_healthy: Event, event_unhealthy: Event, message_retries: int, message_retry_timeout: int, mess...

[ "def", "single_queue_send", "(", "transport", ":", "'UDPTransport'", ",", "recipient", ":", "Address", ",", "queue", ":", "Queue_T", ",", "queue_identifier", ":", "QueueIdentifier", ",", "event_stop", ":", "Event", ",", "event_healthy", ":", "Event", ",", "event...

29.831776

19.682243

def search(self, query, _or=False, ignores=[]): """Search word from FM-index Params: <str> | <Sequential> query <bool> _or <list <str> > ignores Return: <list>SEARCH_RESULT(<int> document_id, <list <int> > counts ...

[ "def", "search", "(", "self", ",", "query", ",", "_or", "=", "False", ",", "ignores", "=", "[", "]", ")", ":", "if", "isinstance", "(", "query", ",", "str", ")", ":", "dids", "=", "MapIntInt", "(", "{", "}", ")", "self", ".", "fm", ".", "search...

37.861111

13.611111

def write_amendment(self, amendment_id, file_content, branch, author): """Given an amendment_id, temporary filename of content, branch and auth_info Deprecated but needed until we merge api local-dep to master... """ gh_user = branch.split('_amendment_')[0] msg = "Update Amendm...

[ "def", "write_amendment", "(", "self", ",", "amendment_id", ",", "file_content", ",", "branch", ",", "author", ")", ":", "gh_user", "=", "branch", ".", "split", "(", "'_amendment_'", ")", "[", "0", "]", "msg", "=", "\"Update Amendment '%s' via OpenTree API\"", ...

45.615385

16.692308

def is_transition_metal(self): """ True if element is a transition metal. """ ns = list(range(21, 31)) ns.extend(list(range(39, 49))) ns.append(57) ns.extend(list(range(72, 81))) ns.append(89) ns.extend(list(range(104, 113))) return self.Z ...

[ "def", "is_transition_metal", "(", "self", ")", ":", "ns", "=", "list", "(", "range", "(", "21", ",", "31", ")", ")", "ns", ".", "extend", "(", "list", "(", "range", "(", "39", ",", "49", ")", ")", ")", "ns", ".", "append", "(", "57", ")", "n...

28.636364

7.181818

def _report_volume_count(self): """Report volume count per state (dangling or not)""" m_func = FUNC_MAP[GAUGE][self.use_histogram] attached_volumes = self.docker_util.client.volumes(filters={'dangling': False}) dangling_volumes = self.docker_util.client.volumes(filters={'dangling': True...

[ "def", "_report_volume_count", "(", "self", ")", ":", "m_func", "=", "FUNC_MAP", "[", "GAUGE", "]", "[", "self", ".", "use_histogram", "]", "attached_volumes", "=", "self", ".", "docker_util", ".", "client", ".", "volumes", "(", "filters", "=", "{", "'dang...

64.1

31.8

def cleanup(self): """ Clean up the saved state. """ if os.path.exists(self.path): os.remove(self.path)

[ "def", "cleanup", "(", "self", ")", ":", "if", "os", ".", "path", ".", "exists", "(", "self", ".", "path", ")", ":", "os", ".", "remove", "(", "self", ".", "path", ")" ]

23.666667

6.666667

def split_model_idx(model:nn.Module, idxs:Collection[int])->ModuleList: "Split `model` according to the indexes in `idxs`." layers = flatten_model(model) if idxs[0] != 0: idxs = [0] + idxs if idxs[-1] != len(layers): idxs.append(len(layers)) return [nn.Sequential(*layers[i:j]) for i,j in zip(idxs[:-...

[ "def", "split_model_idx", "(", "model", ":", "nn", ".", "Module", ",", "idxs", ":", "Collection", "[", "int", "]", ")", "->", "ModuleList", ":", "layers", "=", "flatten_model", "(", "model", ")", "if", "idxs", "[", "0", "]", "!=", "0", ":", "idxs", ...

54.666667

17.666667

def append(self, row=None): """append(row=None) :param row: a list of values to apply to the newly append row or :obj:`None` :type row: [:obj:`object`] or :obj:`None` :returns: :obj:`Gtk.TreeIter` of the appended row :rtype: :obj:`Gtk.TreeIter` If `row` is :obj:`None` ...

[ "def", "append", "(", "self", ",", "row", "=", "None", ")", ":", "if", "row", ":", "return", "self", ".", "_do_insert", "(", "-", "1", ",", "row", ")", "# gtk_list_store_insert() does not know about the \"position == -1\"", "# case, so use append() here", "else", ...

35.086957

21.608696

def df_drop_duplicates(df, ignore_key_pattern="time"): """ Drop duplicates from dataframe ignore columns with keys containing defined pattern. :param df: :param noinfo_key_pattern: :return: """ keys_to_remove = list_contains(df.keys(), ignore_key_pattern) #key_tf = [key.find(noinfo_key...

[ "def", "df_drop_duplicates", "(", "df", ",", "ignore_key_pattern", "=", "\"time\"", ")", ":", "keys_to_remove", "=", "list_contains", "(", "df", ".", "keys", "(", ")", ",", "ignore_key_pattern", ")", "#key_tf = [key.find(noinfo_key_pattern) != -1 for key in df.keys()]", ...

27.421053

21.421053

def upper_bollinger_band(data, period, std_mult=2.0): """ Upper Bollinger Band. Formula: u_bb = SMA(t) + STD(SMA(t-n:t)) * std_mult """ catch_errors.check_for_period_error(data, period) period = int(period) simple_ma = sma(data, period)[period-1:] upper_bb = [] for idx in rang...

[ "def", "upper_bollinger_band", "(", "data", ",", "period", ",", "std_mult", "=", "2.0", ")", ":", "catch_errors", ".", "check_for_period_error", "(", "data", ",", "period", ")", "period", "=", "int", "(", "period", ")", "simple_ma", "=", "sma", "(", "data"...

27.789474

17.894737

def do_video(self, args): """Video management command demonstrates multiple layers of sub-commands being handled by AutoCompleter""" func = getattr(args, 'func', None) if func is not None: # Call whatever subcommand function was selected func(self, args) else: ...

[ "def", "do_video", "(", "self", ",", "args", ")", ":", "func", "=", "getattr", "(", "args", ",", "'func'", ",", "None", ")", "if", "func", "is", "not", "None", ":", "# Call whatever subcommand function was selected", "func", "(", "self", ",", "args", ")", ...

44.111111

12.111111

def _port_action_vxlan(self, port, segment, func): """Verify configuration and then process event.""" # If the segment is None, just log a warning message and return. if segment is None: self._log_missing_segment() return device_id = port.get('device_id') ...

[ "def", "_port_action_vxlan", "(", "self", ",", "port", ",", "segment", ",", "func", ")", ":", "# If the segment is None, just log a warning message and return.", "if", "segment", "is", "None", ":", "self", ".", "_log_missing_segment", "(", ")", "return", "device_id", ...

40.454545

17.909091

def policy_exists(policyName, region=None, key=None, keyid=None, profile=None): ''' Given a policy name, check to see if the given policy exists. Returns True if the given policy exists and returns False if the given policy does not exist. CLI Example: .. code-block:: bash ...

[ "def", "policy_exists", "(", "policyName", ",", "region", "=", "None", ",", "key", "=", "None", ",", "keyid", "=", "None", ",", "profile", "=", "None", ")", ":", "try", ":", "conn", "=", "_get_conn", "(", "region", "=", "region", ",", "key", "=", "...

29.76

24.88

def btc_tx_serialize(_txobj): """ Given a transaction dict returned by btc_tx_deserialize, convert it back into a hex-encoded byte string. Derived from code written by Vitalik Buterin in pybitcointools (https://github.com/vbuterin/pybitcointools) """ # output buffer o = [] txobj = ...

[ "def", "btc_tx_serialize", "(", "_txobj", ")", ":", "# output buffer", "o", "=", "[", "]", "txobj", "=", "None", "if", "encoding", ".", "json_is_base", "(", "_txobj", ",", "16", ")", ":", "# txobj is built from hex strings already. deserialize them ", "txobj", "=...

28.4125

23.8875

def srun_nodes(self): """Get list of nodes where to execute the command """ count = self.execution.get('srun_nodes', 0) if isinstance(count, six.string_types): tag = count count = 0 elif isinstance(count, SEQUENCES): return count else: ...

[ "def", "srun_nodes", "(", "self", ")", ":", "count", "=", "self", ".", "execution", ".", "get", "(", "'srun_nodes'", ",", "0", ")", "if", "isinstance", "(", "count", ",", "six", ".", "string_types", ")", ":", "tag", "=", "count", "count", "=", "0", ...

34.705882

10.941176

def get_language_data(self, qid, lang, lang_data_type): """ get language data for specified qid :param qid: :param lang: language code :param lang_data_type: 'label', 'description' or 'aliases' :return: list of strings If nothing is found: If lang_data...

[ "def", "get_language_data", "(", "self", ",", "qid", ",", "lang", ",", "lang_data_type", ")", ":", "self", ".", "init_language_data", "(", "lang", ",", "lang_data_type", ")", "current_lang_data", "=", "self", ".", "loaded_langs", "[", "lang", "]", "[", "lang...

41.210526

14.894737

def load_graphs(): '''load graphs from mavgraphs.xml''' mestate.graphs = [] gfiles = ['mavgraphs.xml'] if 'HOME' in os.environ: for dirname, dirnames, filenames in os.walk(os.path.join(os.environ['HOME'], ".mavproxy")): for filename in filenames: if filename.lower().e...

[ "def", "load_graphs", "(", ")", ":", "mestate", ".", "graphs", "=", "[", "]", "gfiles", "=", "[", "'mavgraphs.xml'", "]", "if", "'HOME'", "in", "os", ".", "environ", ":", "for", "dirname", ",", "dirnames", ",", "filenames", "in", "os", ".", "walk", "...

44.95122

19.439024

def initialize_fields(self): """ Convert all model fields to validator fields. Then call the parent so that overwrites can happen if necessary for manually defined fields. :return: None """ # # Pull all the "normal" fields off the model instance meta. for name, f...

[ "def", "initialize_fields", "(", "self", ")", ":", "# # Pull all the \"normal\" fields off the model instance meta.", "for", "name", ",", "field", "in", "self", ".", "instance", ".", "_meta", ".", "fields", ".", "items", "(", ")", ":", "if", "getattr", "(", "fie...

41.666667

20.809524

def plotConvergenceByColumnTopology(results, columnRange, featureRange, networkType, numTrials): """ Plots the convergence graph: iterations vs number of columns. Each curve shows the convergence for a given number of unique features. """ #######################################################################...

[ "def", "plotConvergenceByColumnTopology", "(", "results", ",", "columnRange", ",", "featureRange", ",", "networkType", ",", "numTrials", ")", ":", "########################################################################", "#", "# Accumulate all the results per column in a convergenc...

34.738462

22.676923

def parse_line(self, line): """Parses a single line of a GPI. Return a tuple `(processed_line, entities)`. Typically there will be a single entity, but in some cases there may be none (invalid line) or multiple (disjunctive clause in annotation extensions) Note: most ap...

[ "def", "parse_line", "(", "self", ",", "line", ")", ":", "vals", "=", "line", ".", "split", "(", "\"\\t\"", ")", "if", "len", "(", "vals", ")", "<", "7", ":", "self", ".", "report", ".", "error", "(", "line", ",", "assocparser", ".", "Report", "....

29.243902

21.170732

def get_physical_port(self): """Returns the link aggregation object or the ethernet port object.""" obj = None if self.is_link_aggregation(): obj = UnityLinkAggregation.get(self._cli, self.get_id()) else: obj = UnityEthernetPort.get(self._cli, self.get_id()) ...

[ "def", "get_physical_port", "(", "self", ")", ":", "obj", "=", "None", "if", "self", ".", "is_link_aggregation", "(", ")", ":", "obj", "=", "UnityLinkAggregation", ".", "get", "(", "self", ".", "_cli", ",", "self", ".", "get_id", "(", ")", ")", "else",...

40.75

17.25

def create_module(clear_target, target): """Creates a new template HFOS plugin module""" if os.path.exists(target): if clear_target: shutil.rmtree(target) else: log("Target exists! Use --clear to delete it first.", emitter='MANAGE') sys.exit(2...

[ "def", "create_module", "(", "clear_target", ",", "target", ")", ":", "if", "os", ".", "path", ".", "exists", "(", "target", ")", ":", "if", "clear_target", ":", "shutil", ".", "rmtree", "(", "target", ")", "else", ":", "log", "(", "\"Target exists! Use ...

27.347826

19.826087

def get_stack_frames(error_stack: bool = True) -> list: """ Returns a list of the current stack frames, which are pruned focus on the Cauldron code where the relevant information resides. """ cauldron_path = environ.paths.package() resources_path = environ.paths.resources() frames = ( ...

[ "def", "get_stack_frames", "(", "error_stack", ":", "bool", "=", "True", ")", "->", "list", ":", "cauldron_path", "=", "environ", ".", "paths", ".", "package", "(", ")", "resources_path", "=", "environ", ".", "paths", ".", "resources", "(", ")", "frames", ...

29.074074

21.814815

def analog_sensor_power(cls, bus, operation): """ Method that turns on all of the analog sensor modules Includes all attached soil moisture sensors Note that all of the SensorCluster object should be attached in parallel and only 1 GPIO pin is available ...

[ "def", "analog_sensor_power", "(", "cls", ",", "bus", ",", "operation", ")", ":", "# Set appropriate analog sensor power bit in GPIO mask\r", "# using the ControlCluster bank_mask to avoid overwriting any data\r", "reg_data", "=", "get_IO_reg", "(", "bus", ",", "0x20", ",", "...

53.52

20.88

def is_valid(self, wordid) -> bool: """ Ensures </s> is only generated when the hypothesis is completed. :param wordid: The wordid to validate. :return: True if all constraints are already met or the word ID is not the EOS id. """ return self.finished() or wordid != self...

[ "def", "is_valid", "(", "self", ",", "wordid", ")", "->", "bool", ":", "return", "self", ".", "finished", "(", ")", "or", "wordid", "!=", "self", ".", "eos_id", "or", "(", "self", ".", "num_needed", "(", ")", "==", "1", "and", "self", ".", "eos_id"...

47.75

26.25

def broadcast_variables(*variables): """Given any number of variables, return variables with matching dimensions and broadcast data. The data on the returned variables will be a view of the data on the corresponding original arrays, but dimensions will be reordered and inserted so that both broadca...

[ "def", "broadcast_variables", "(", "*", "variables", ")", ":", "dims_map", "=", "_unified_dims", "(", "variables", ")", "dims_tuple", "=", "tuple", "(", "dims_map", ")", "return", "tuple", "(", "var", ".", "set_dims", "(", "dims_map", ")", "if", "var", "."...

48.5

18.357143

def read_property_to_any(obj, propertyIdentifier, propertyArrayIndex=None): """Read the specified property of the object, with the optional array index, and cast the result into an Any object.""" if _debug: read_property_to_any._debug("read_property_to_any %s %r %r", obj, propertyIdentifier, propertyArrayIn...

[ "def", "read_property_to_any", "(", "obj", ",", "propertyIdentifier", ",", "propertyArrayIndex", "=", "None", ")", ":", "if", "_debug", ":", "read_property_to_any", ".", "_debug", "(", "\"read_property_to_any %s %r %r\"", ",", "obj", ",", "propertyIdentifier", ",", ...

45.425

23.875

def _parse_sequences(ilines, expect_qlen): """Parse the sequences in the current block. Sequence looks like: $3=227(209): >gi|15606894|ref|NP_214275.1| {|2(244)|<Aquificae(B)>}DNA polymerase III gamma subunit [Aquifex aeolicus VF5] >gi|2984127|gb|AAC07663.1| DNA polymerase III gamma subunit [Aquifex ...

[ "def", "_parse_sequences", "(", "ilines", ",", "expect_qlen", ")", ":", "while", "True", ":", "first", "=", "next", "(", "ilines", ")", "if", "first", ".", "startswith", "(", "'_'", ")", "and", "first", ".", "endswith", "(", "'].'", ")", ":", "# End of...

39.8125

21.921875

def logging_config(logpath=None, level=logging.DEBUG, console_level=logging.INFO, no_console=False): """ Config the logging. """ logger = logging.getLogger('nli') # Remove all the current handlers for handler in logger.handlers: lo...

[ "def", "logging_config", "(", "logpath", "=", "None", ",", "level", "=", "logging", ".", "DEBUG", ",", "console_level", "=", "logging", ".", "INFO", ",", "no_console", "=", "False", ")", ":", "logger", "=", "logging", ".", "getLogger", "(", "'nli'", ")",...

32.4

11.133333

def restore(self): """Restore the saved value for the attribute of the object.""" if self.proxy_object is None: if self.getter: setattr(self.getter_class, self.attr_name, self.getter) elif self.is_local: setattr(self.orig_object, self.attr_name, se...

[ "def", "restore", "(", "self", ")", ":", "if", "self", ".", "proxy_object", "is", "None", ":", "if", "self", ".", "getter", ":", "setattr", "(", "self", ".", "getter_class", ",", "self", ".", "attr_name", ",", "self", ".", "getter", ")", "elif", "sel...

43.5

15.642857

def make_name(text, delim=u'-', maxlength=50, checkused=None, counter=2): u""" Generate an ASCII name slug. If a checkused filter is provided, it will be called with the candidate. If it returns True, make_name will add counter numbers starting from 2 until a suitable candidate is found. :param str...

[ "def", "make_name", "(", "text", ",", "delim", "=", "u'-'", ",", "maxlength", "=", "50", ",", "checkused", "=", "None", ",", "counter", "=", "2", ")", ":", "name", "=", "text", ".", "replace", "(", "'@'", ",", "delim", ")", "name", "=", "unidecode"...

39.625

20.795455

def validate_fillna_kwargs(value, method, validate_scalar_dict_value=True): """Validate the keyword arguments to 'fillna'. This checks that exactly one of 'value' and 'method' is specified. If 'method' is specified, this validates that it's a valid method. Parameters ---------- value, method :...

[ "def", "validate_fillna_kwargs", "(", "value", ",", "method", ",", "validate_scalar_dict_value", "=", "True", ")", ":", "from", "pandas", ".", "core", ".", "missing", "import", "clean_fill_method", "if", "value", "is", "None", "and", "method", "is", "None", ":...

37.676471

23.882353

def check(self, request, secret): """Verifies whether or not the request bears an authorization appropriate and valid for this version of the signature. This verifies every element of the signature, including headers other than Authorization. Keyword arguments: request -- A request obje...

[ "def", "check", "(", "self", ",", "request", ",", "secret", ")", ":", "if", "request", ".", "get_header", "(", "\"Authorization\"", ")", "==", "\"\"", ":", "return", "False", "ah", "=", "self", ".", "parse_auth_headers", "(", "request", ".", "get_header", ...

47.4375

20.125

def setup_observations(self): """ main entry point for setting up observations """ obs_methods = [self.setup_water_budget_obs,self.setup_hyd, self.setup_smp,self.setup_hob,self.setup_hds, self.setup_sfr_obs] obs_types = ["mflist water budget...

[ "def", "setup_observations", "(", "self", ")", ":", "obs_methods", "=", "[", "self", ".", "setup_water_budget_obs", ",", "self", ".", "setup_hyd", ",", "self", ".", "setup_smp", ",", "self", ".", "setup_hob", ",", "self", ".", "setup_hds", ",", "self", "."...

45.571429

18.214286

def element_neighbors(self): """Return a list with element numbers (zero indexed) of neighboring elements. Note that the elements are not sorted. No spacial orientation can be inferred from the order of neighbors. WARNING: This function is slow due to a nested loop. This would be a ...

[ "def", "element_neighbors", "(", "self", ")", ":", "if", "self", ".", "element_neighbors_data", "is", "not", "None", ":", "return", "self", ".", "element_neighbors_data", "max_nr_edges", "=", "self", ".", "header", "[", "'element_infos'", "]", "[", "0", ",", ...

40

21.428571

def generate_url(query, first, recent, country_code): """(str, str) -> str A url in the required format is generated. """ query = '+'.join(query.split()) url = 'http://www.bing.com/search?q=' + query + '&first=' + first if recent in ['h', 'd', 'w', 'm', 'y']: # A True/False would be enough. This...

[ "def", "generate_url", "(", "query", ",", "first", ",", "recent", ",", "country_code", ")", ":", "query", "=", "'+'", ".", "join", "(", "query", ".", "split", "(", ")", ")", "url", "=", "'http://www.bing.com/search?q='", "+", "query", "+", "'&first='", "...

44.272727

16.545455

def create_table(group, name, dtype, **attributes): """Create a new array dataset under group with compound datatype and maxshape=(None,)""" dset = group.create_dataset( name, shape=(0,), dtype=dtype, maxshape=(None,)) set_attributes(dset, **attributes) return dset

[ "def", "create_table", "(", "group", ",", "name", ",", "dtype", ",", "*", "*", "attributes", ")", ":", "dset", "=", "group", ".", "create_dataset", "(", "name", ",", "shape", "=", "(", "0", ",", ")", ",", "dtype", "=", "dtype", ",", "maxshape", "="...

47.333333

10.333333

def decode_varint(f, max_bytes=4): """Decode variable integer using algorithm similar to that described in MQTT Version 3.1.1 line 297. Parameters ---------- f: file Object with a read method. max_bytes: int or None If a varint cannot be constructed using `max_bytes` or fewer ...

[ "def", "decode_varint", "(", "f", ",", "max_bytes", "=", "4", ")", ":", "num_bytes_consumed", "=", "0", "value", "=", "0", "m", "=", "1", "while", "True", ":", "buf", "=", "f", ".", "read", "(", "1", ")", "if", "len", "(", "buf", ")", "==", "0"...

24.784314

22.72549

def log_request(self, handler: RequestHandler) -> None: """Writes a completed HTTP request to the logs. By default writes to the python root logger. To change this behavior either subclass Application and override this method, or pass a function in the application settings dictionary a...

[ "def", "log_request", "(", "self", ",", "handler", ":", "RequestHandler", ")", "->", "None", ":", "if", "\"log_function\"", "in", "self", ".", "settings", ":", "self", ".", "settings", "[", "\"log_function\"", "]", "(", "handler", ")", "return", "if", "han...

37.166667

13.916667

def decode(model, tokens, start_token, end_token, pad_token, max_len=10000, max_repeat=10, max_repeat_block=10): """Decode with the given model and input tokens. :param model: The trained model. :param tokens: The input tokens of encoder. :param start_token: The token that represents the start of a sen...

[ "def", "decode", "(", "model", ",", "tokens", ",", "start_token", ",", "end_token", ",", "pad_token", ",", "max_len", "=", "10000", ",", "max_repeat", "=", "10", ",", "max_repeat_block", "=", "10", ")", ":", "is_single", "=", "not", "isinstance", "(", "t...

47.272727

19.022727

def find_python(): """Search for Python automatically""" python = ( _state.get("pythonExecutable") or # Support for multiple executables. next(( exe for exe in os.getenv("PYBLISH_QML_PYTHON_EXECUTABLE", "").split(os.pathsep) if os.path.isfile(exe)), N...

[ "def", "find_python", "(", ")", ":", "python", "=", "(", "_state", ".", "get", "(", "\"pythonExecutable\"", ")", "or", "# Support for multiple executables.", "next", "(", "(", "exe", "for", "exe", "in", "os", ".", "getenv", "(", "\"PYBLISH_QML_PYTHON_EXECUTABLE\...

26.047619

20.857143

def parse_bewit(bewit): """ Returns a `bewittuple` representing the parts of an encoded bewit string. This has the following named attributes: (id, expiration, mac, ext) :param bewit: A base64 encoded bewit string :type bewit: str """ decoded_bewit = b64decode(bewit).decode(...

[ "def", "parse_bewit", "(", "bewit", ")", ":", "decoded_bewit", "=", "b64decode", "(", "bewit", ")", ".", "decode", "(", "'ascii'", ")", "bewit_parts", "=", "decoded_bewit", ".", "split", "(", "\"\\\\\"", ")", "if", "len", "(", "bewit_parts", ")", "!=", "...

33.333333

14.4

def _HasOOOWrite(self, path): """Returns whether the path has had an out-of-order write.""" # Check the sizes of each path before the current one. size = tf.io.gfile.stat(path).length old_size = self._finalized_sizes.get(path, None) if size != old_size: if old_size is None: logger.erro...

[ "def", "_HasOOOWrite", "(", "self", ",", "path", ")", ":", "# Check the sizes of each path before the current one.", "size", "=", "tf", ".", "io", ".", "gfile", ".", "stat", "(", "path", ")", ".", "length", "old_size", "=", "self", ".", "_finalized_sizes", "."...

40.466667

18.266667

def create_config(config_path="scriptworker.yaml"): """Create a config from DEFAULT_CONFIG, arguments, and config file. Then validate it and freeze it. Args: config_path (str, optional): the path to the config file. Defaults to "scriptworker.yaml" Returns: tuple: (config ...

[ "def", "create_config", "(", "config_path", "=", "\"scriptworker.yaml\"", ")", ":", "if", "not", "os", ".", "path", ".", "exists", "(", "config_path", ")", ":", "print", "(", "\"{} doesn't exist! Exiting...\"", ".", "format", "(", "config_path", ")", ",", "fil...

32.457143

17.428571

def _generate_examples(self, images_dir_path, labels_path, setid_path, split_name): """Yields examples.""" with tf.io.gfile.GFile(labels_path, "rb") as f: labels = tfds.core.lazy_imports.scipy.io.loadmat(f)["labels"][0] with tf.io.gfile.GFile(setid_path, "rb") as f: exam...

[ "def", "_generate_examples", "(", "self", ",", "images_dir_path", ",", "labels_path", ",", "setid_path", ",", "split_name", ")", ":", "with", "tf", ".", "io", ".", "gfile", ".", "GFile", "(", "labels_path", ",", "\"rb\"", ")", "as", "f", ":", "labels", "...

40.6

17.666667

def write_out(self, message, verbosity_level=1): """ Convenient method for outputing. """ if self.verbosity and self.verbosity >= verbosity_level: sys.stdout.write(smart_str(message)) sys.stdout.flush()

[ "def", "write_out", "(", "self", ",", "message", ",", "verbosity_level", "=", "1", ")", ":", "if", "self", ".", "verbosity", "and", "self", ".", "verbosity", ">=", "verbosity_level", ":", "sys", ".", "stdout", ".", "write", "(", "smart_str", "(", "messag...

36

7.142857

def _html(self, text): '''Parse a Tweet and generate HTML.''' html = URL_REGEX.sub(self._parse_urls, text) html = USERNAME_REGEX.sub(self._parse_users, html) html = LIST_REGEX.sub(self._parse_lists, html) return HASHTAG_REGEX.sub(self._parse_tags, html)

[ "def", "_html", "(", "self", ",", "text", ")", ":", "html", "=", "URL_REGEX", ".", "sub", "(", "self", ".", "_parse_urls", ",", "text", ")", "html", "=", "USERNAME_REGEX", ".", "sub", "(", "self", ".", "_parse_users", ",", "html", ")", "html", "=", ...

48

14

def is_subclass(ch, ns, super_class, sub): """Determine if one class is a subclass of another class. Parameters: ch: A CIMOMHandle. Either a pycimmb.CIMOMHandle or a :class:`~pywbem.WBEMConnection` object. ns (:term:`string`): Namespace (case independent). super_cl...

[ "def", "is_subclass", "(", "ch", ",", "ns", ",", "super_class", ",", "sub", ")", ":", "lsuper", "=", "super_class", ".", "lower", "(", ")", "if", "isinstance", "(", "sub", ",", "CIMClass", ")", ":", "subname", "=", "sub", ".", "classname", "subclass", ...

31.826923

17.134615

def _rotations_to_disentangle(local_param): """ Static internal method to work out Ry and Rz rotation angles used to disentangle the LSB qubit. These rotations make up the block diagonal matrix U (i.e. multiplexor) that disentangles the LSB. [[Ry(theta_1).Rz(phi_1) 0 ...

[ "def", "_rotations_to_disentangle", "(", "local_param", ")", ":", "remaining_vector", "=", "[", "]", "thetas", "=", "[", "]", "phis", "=", "[", "]", "param_len", "=", "len", "(", "local_param", ")", "for", "i", "in", "range", "(", "param_len", "//", "2",...

36.945946

19

def readNamelist(namFilename, unique_glyphs=False, cache=None): """ Args: namFilename: The path to the Namelist file. unique_glyphs: Optional, whether to only include glyphs unique to subset. cache: Optional, a dict used to cache loaded Namelist files Returns: A dict with following keys: "fileNa...

[ "def", "readNamelist", "(", "namFilename", ",", "unique_glyphs", "=", "False", ",", "cache", "=", "None", ")", ":", "currentlyIncluding", "=", "set", "(", ")", "if", "not", "cache", ":", "cache", "=", "{", "}", "return", "_readNamelist", "(", "currentlyInc...

40.233333

21.5

def get_seqstr(config, metadata): """ Extract and reformat imaging sequence(s) and variant(s) into pretty strings. Parameters ---------- config : :obj:`dict` A dictionary with relevant information regarding sequences, sequence variants, phase encoding directions, and task names....

[ "def", "get_seqstr", "(", "config", ",", "metadata", ")", ":", "seq_abbrs", "=", "metadata", ".", "get", "(", "'ScanningSequence'", ",", "''", ")", ".", "split", "(", "'_'", ")", "seqs", "=", "[", "config", "[", "'seq'", "]", ".", "get", "(", "seq", ...

31.551724

19.482759

def impute(self, vars: dict, replace: bool = False, prefix: str = 'imp_', out: 'SASdata' = None) -> 'SASdata': """ Imputes missing values for a SASdata object. :param vars: a dictionary in the form of {'varname':'impute type'} or {'impute type':'[var1, var2]'} :param replace: :p...

[ "def", "impute", "(", "self", ",", "vars", ":", "dict", ",", "replace", ":", "bool", "=", "False", ",", "prefix", ":", "str", "=", "'imp_'", ",", "out", ":", "'SASdata'", "=", "None", ")", "->", "'SASdata'", ":", "outstr", "=", "''", "if", "out", ...

44.26087

21.617391

def compute_K_L_alpha_ll(self): r"""Compute `K`, `L`, `alpha` and log-likelihood according to the first part of Algorithm 2.1 in R&W. Computes `K` and the noise portion of `K` using :py:meth:`compute_Kij`, computes `L` using :py:func:`scipy.linalg.cholesky`, then computes `alpha...

[ "def", "compute_K_L_alpha_ll", "(", "self", ")", ":", "if", "not", "self", ".", "K_up_to_date", ":", "y", "=", "self", ".", "y", "err_y", "=", "self", ".", "err_y", "self", ".", "K", "=", "self", ".", "compute_Kij", "(", "self", ".", "X", ",", "Non...

50.371429

22.314286

def rcts(self, command, *args, **kwargs): '''General function for applying a rolling R function to a timeserie''' cls = self.__class__ name = kwargs.pop('name','') date = kwargs.pop('date',None) data = kwargs.pop('data',None) kwargs.pop('bycolumn',None) ts ...

[ "def", "rcts", "(", "self", ",", "command", ",", "*", "args", ",", "*", "*", "kwargs", ")", ":", "cls", "=", "self", ".", "__class__", "name", "=", "kwargs", ".", "pop", "(", "'name'", ",", "''", ")", "date", "=", "kwargs", ".", "pop", "(", "'d...

41.9

10.5

def update(self): """Once you open a dataset, it activates all the widgets. """ self.info.display_dataset() self.overview.update() self.labels.update(labels=self.info.dataset.header['chan_name']) self.channels.update() try: self.info.markers = self.in...

[ "def", "update", "(", "self", ")", ":", "self", ".", "info", ".", "display_dataset", "(", ")", "self", ".", "overview", ".", "update", "(", ")", "self", ".", "labels", ".", "update", "(", "labels", "=", "self", ".", "info", ".", "dataset", ".", "he...

35.785714

17.5

def image_size(self, pnmfile): """Get width and height of pnm file. simeon@homebox src>pnmfile /tmp/214-2.png /tmp/214-2.png:PPM raw, 100 by 100 maxval 255 """ pout = os.popen(self.shellsetup + self.pnmfile + ' ' + pnmfile, 'r') pnmfileout = pout.read(200) pout....

[ "def", "image_size", "(", "self", ",", "pnmfile", ")", ":", "pout", "=", "os", ".", "popen", "(", "self", ".", "shellsetup", "+", "self", ".", "pnmfile", "+", "' '", "+", "pnmfile", ",", "'r'", ")", "pnmfileout", "=", "pout", ".", "read", "(", "200...

37

15.055556

def register_lazy_provider_method(self, cls, method): """ Register a class method lazily as a provider. """ if 'provides' not in getattr(method, '__di__', {}): raise DiayException('method %r is not a provider' % method) @functools.wraps(method) def wrapper(*a...

[ "def", "register_lazy_provider_method", "(", "self", ",", "cls", ",", "method", ")", ":", "if", "'provides'", "not", "in", "getattr", "(", "method", ",", "'__di__'", ",", "{", "}", ")", ":", "raise", "DiayException", "(", "'method %r is not a provider'", "%", ...

38.416667

18.416667

def pip_upgrade_all_user(line): """Attempt to upgrade all packages installed with --user""" import pip for dist in pip.get_installed_distributions(user_only=True): do_pip(["install", "--upgrade", "--user", dist.project_name])

[ "def", "pip_upgrade_all_user", "(", "line", ")", ":", "import", "pip", "for", "dist", "in", "pip", ".", "get_installed_distributions", "(", "user_only", "=", "True", ")", ":", "do_pip", "(", "[", "\"install\"", ",", "\"--upgrade\"", ",", "\"--user\"", ",", "...

48.2

17.6

def register_regex_entity(self, regex_str): """ A regular expression making use of python named group expressions. Example: (?P<Artist>.*) regex_str(str): a string representing a regular expression as defined above """ if regex_str and regex_str not in self._regex_strin...

[ "def", "register_regex_entity", "(", "self", ",", "regex_str", ")", ":", "if", "regex_str", "and", "regex_str", "not", "in", "self", ".", "_regex_strings", ":", "self", ".", "_regex_strings", ".", "add", "(", "regex_str", ")", "self", ".", "regular_expressions...

41

22.454545

def get_full_description(self, s, base=None): """Get the full description from a docstring This here and the line above is the full description (i.e. the combination of the :meth:`get_summary` and the :meth:`get_extended_summary`) output Parameters ---------- s:...

[ "def", "get_full_description", "(", "self", ",", "s", ",", "base", "=", "None", ")", ":", "summary", "=", "self", ".", "get_summary", "(", "s", ")", "extended_summary", "=", "self", ".", "get_extended_summary", "(", "s", ")", "ret", "=", "(", "summary", ...

34.814815

20.185185

def build_doctype(qualifiedName, publicId=None, systemId=None, internalSubset=None): """ Instantiate an ElifeDocumentType, a subclass of minidom.DocumentType, with some properties so it is more testable """ doctype = ElifeDocumentType(qualifiedName) doctype._identified_mixin_init(publicId, syste...

[ "def", "build_doctype", "(", "qualifiedName", ",", "publicId", "=", "None", ",", "systemId", "=", "None", ",", "internalSubset", "=", "None", ")", ":", "doctype", "=", "ElifeDocumentType", "(", "qualifiedName", ")", "doctype", ".", "_identified_mixin_init", "(",...

40.5

15.1

def register_service(service): """ Register the ryu application specified by 'service' as a provider of events defined in the calling module. If an application being loaded consumes events (in the sense of set_ev_cls) provided by the 'service' application, the latter application will be automat...

[ "def", "register_service", "(", "service", ")", ":", "frame", "=", "inspect", ".", "currentframe", "(", ")", "m_name", "=", "frame", ".", "f_back", ".", "f_globals", "[", "'__name__'", "]", "m", "=", "sys", ".", "modules", "[", "m_name", "]", "m", ".",...

36.75

15.875

def getInferenceTypeFromLabel(cls, label): """ Extracts the PredictionKind (temporal vs. nontemporal) from the given metric label. :param label: (string) for a metric spec generated by :meth:`getMetricLabel` :returns: (:class:`~nupic.frameworks.opf.opf_utils.InferenceType`) """ ...

[ "def", "getInferenceTypeFromLabel", "(", "cls", ",", "label", ")", ":", "infType", ",", "_", ",", "_", "=", "label", ".", "partition", "(", "cls", ".", "_LABEL_SEPARATOR", ")", "if", "not", "InferenceType", ".", "validate", "(", "infType", ")", ":", "ret...

27.625

21.0625

def annotate_and_optimize_ast( parsed_ast: ast.Module, source_code: str, class_types: Optional[ClassTypes] = None, ) -> None: """ Performs annotation and optimization on a parsed python AST by doing the following: * Annotating all AST nodes with the originating source code of the AST * ...

[ "def", "annotate_and_optimize_ast", "(", "parsed_ast", ":", "ast", ".", "Module", ",", "source_code", ":", "str", ",", "class_types", ":", "Optional", "[", "ClassTypes", "]", "=", "None", ",", ")", "->", "None", ":", "AnnotatingVisitor", "(", "source_code", ...

39.409091

19.5

def execute_commands(self, mapping, *args, **kwargs): """Concurrently executes a sequence of commands on a Redis cluster that are associated with a routing key, returning a new mapping where values are a list of results that correspond to the command in the same position. For example:: ...

[ "def", "execute_commands", "(", "self", ",", "mapping", ",", "*", "args", ",", "*", "*", "kwargs", ")", ":", "def", "is_script_command", "(", "command", ")", ":", "return", "isinstance", "(", "command", "[", "0", "]", ",", "Script", ")", "def", "check_...

45.104167

21.770833

def is_rdemo(file_name): """ Return True if file_name matches a regexp for an R demo. False otherwise. :param file_name: file to test """ packaged_demos = ["h2o.anomaly.R", "h2o.deeplearning.R", "h2o.gbm.R", "h2o.glm.R", "h2o.glrm.R", "h2o.kmeans.R", "h2o.naiveBayes.R", "h2o.p...

[ "def", "is_rdemo", "(", "file_name", ")", ":", "packaged_demos", "=", "[", "\"h2o.anomaly.R\"", ",", "\"h2o.deeplearning.R\"", ",", "\"h2o.gbm.R\"", ",", "\"h2o.glm.R\"", ",", "\"h2o.glrm.R\"", ",", "\"h2o.kmeans.R\"", ",", "\"h2o.naiveBayes.R\"", ",", "\"h2o.prcomp.R\"...

47.3

23.1

def readAt(self, offset, size): """ Reads as many bytes indicated in the size parameter at the specific offset. @type offset: int @param offset: Offset of the value to be read. @type size: int @param size: This parameter indicates how many bytes are going to be read fro...

[ "def", "readAt", "(", "self", ",", "offset", ",", "size", ")", ":", "if", "offset", ">", "self", ".", "length", ":", "if", "self", ".", "log", ":", "print", "\"Warning: Trying to read: %d bytes - only %d bytes left\"", "%", "(", "nroBytes", ",", "self", ".",...

34.954545

22.590909

def is_contradictory(self, other): """ Can these two strings coexist ? """ other = StringCell.coerce(other) if self.value is None or other.value is None: # None = empty, and won't contradict anything return False def sequence_in(s1, s2): ...

[ "def", "is_contradictory", "(", "self", ",", "other", ")", ":", "other", "=", "StringCell", ".", "coerce", "(", "other", ")", "if", "self", ".", "value", "is", "None", "or", "other", ".", "value", "is", "None", ":", "# None = empty, and won't contradict anyt...

32.625

14.1875

def GetFileEntryByPathSpec(self, path_spec): """Retrieves a file entry for a path specification. Args: path_spec (PathSpec): path specification of the file entry. Returns: ZipFileEntry: a file entry or None. """ if not self.FileEntryExistsByPathSpec(path_spec): return None l...

[ "def", "GetFileEntryByPathSpec", "(", "self", ",", "path_spec", ")", ":", "if", "not", "self", ".", "FileEntryExistsByPathSpec", "(", "path_spec", ")", ":", "return", "None", "location", "=", "getattr", "(", "path_spec", ",", "'location'", ",", "None", ")", ...

27.666667

20.555556

def _decode_exp(self, access_token=None): """Extract exp field from access token. Args: access_token (str): Access token to decode. Defaults to ``None``. Returns: int: JWT expiration in epoch seconds. """ c = self.get_credentials() jwt = access_...

[ "def", "_decode_exp", "(", "self", ",", "access_token", "=", "None", ")", ":", "c", "=", "self", ".", "get_credentials", "(", ")", "jwt", "=", "access_token", "or", "c", ".", "access_token", "x", "=", "self", ".", "decode_jwt_payload", "(", "jwt", ")", ...

29.12

17.84

def copy_pkg(self, filename, id_=-1): """Copy a pkg, dmg, or zip to all repositories. Args: filename: String path to the local file to copy. id_: Integer ID you wish to associate package with for a JDS or CDP only. Default is -1, which is used for creating ...

[ "def", "copy_pkg", "(", "self", ",", "filename", ",", "id_", "=", "-", "1", ")", ":", "for", "repo", "in", "self", ".", "_children", ":", "repo", ".", "copy_pkg", "(", "filename", ",", "id_", ")" ]

40.545455

15.454545

def get_bundle_imported_services(self, bundle): """ Returns this bundle's ServiceReference list for all services it is using or returns None if this bundle is not using any services. A bundle is considered to be using a service if its use count for that service is greater than ze...

[ "def", "get_bundle_imported_services", "(", "self", ",", "bundle", ")", ":", "with", "self", ".", "__svc_lock", ":", "return", "sorted", "(", "self", ".", "__bundle_imports", ".", "get", "(", "bundle", ",", "[", "]", ")", ")" ]

45.3125

21.1875

def _cache_ops_associate(protocol, msgtype): """https://github.com/thom311/libnl/blob/libnl3_2_25/lib/cache_mngt.c#L111. Positional arguments: protocol -- Netlink protocol (integer). msgtype -- Netlink message type (integer). Returns: nl_cache_ops instance with matching protocol containing mat...

[ "def", "_cache_ops_associate", "(", "protocol", ",", "msgtype", ")", ":", "ops", "=", "cache_ops", "while", "ops", ":", "# Loop until `ops` is None.", "if", "ops", ".", "co_protocol", "==", "protocol", ":", "for", "co_msgtype", "in", "ops", ".", "co_msgtypes", ...

33.611111

14.944444

def parse_config(f): """ Load an yml-formatted configuration from file stream |f| :param file f: Where to read the config. """ try: c = yaml.safe_load(f) for section_name, section in c.items(): group = get_group(section_name) for key, val in section.items()...

[ "def", "parse_config", "(", "f", ")", ":", "try", ":", "c", "=", "yaml", ".", "safe_load", "(", "f", ")", "for", "section_name", ",", "section", "in", "c", ".", "items", "(", ")", ":", "group", "=", "get_group", "(", "section_name", ")", "for", "ke...

33.052632

18.526316

def p_retry_option(p): """ retry_option : LIMIT COLON NUMBER | DELAY COLON IDENTIFIER OPEN_BRACKET NUMBER CLOSE_BRACKET """ if len(p) == 4: p[0] = {"limit": int(p[3]) } elif len(p) == 7: p[0] = {"delay": Delay(int(p[5]), p[3])} else: raise RuntimeError("I...

[ "def", "p_retry_option", "(", "p", ")", ":", "if", "len", "(", "p", ")", "==", "4", ":", "p", "[", "0", "]", "=", "{", "\"limit\"", ":", "int", "(", "p", "[", "3", "]", ")", "}", "elif", "len", "(", "p", ")", "==", "7", ":", "p", "[", "...

31.545455

15

def components(self): '''The period string''' p = '' neg = self.totaldays < 0 y = self.years m = self.months w = self.weeks d = self.days if y: p = '%sY' % abs(y) if m: p = '%s%sM' % (p, abs(m)) if w: p =...

[ "def", "components", "(", "self", ")", ":", "p", "=", "''", "neg", "=", "self", ".", "totaldays", "<", "0", "y", "=", "self", ".", "years", "m", "=", "self", ".", "months", "w", "=", "self", ".", "weeks", "d", "=", "self", ".", "days", "if", ...

24.294118

15.705882

def _validate_jp2h(self, boxes): """Validate the JP2 Header box.""" self._check_jp2h_child_boxes(boxes, 'top-level') jp2h_lst = [box for box in boxes if box.box_id == 'jp2h'] jp2h = jp2h_lst[0] # 1st jp2 header box cannot be empty. if len(jp2h.box) == 0: msg...

[ "def", "_validate_jp2h", "(", "self", ",", "boxes", ")", ":", "self", ".", "_check_jp2h_child_boxes", "(", "boxes", ",", "'top-level'", ")", "jp2h_lst", "=", "[", "box", "for", "box", "in", "boxes", "if", "box", ".", "box_id", "==", "'jp2h'", "]", "jp2h"...

36.259259

17.148148

def show_search_results( log_rec, code_view=True, json_view=False, show_message_details=False): """show_search_results Show search results like rsyslog or as pretty-printed JSON dictionaries per log for debugging drill-down fields :param log_rec: log record from splunk ...

[ "def", "show_search_results", "(", "log_rec", ",", "code_view", "=", "True", ",", "json_view", "=", "False", ",", "show_message_details", "=", "False", ")", ":", "log_dict", "=", "None", "try", ":", "log_dict", "=", "json", ".", "loads", "(", "log_rec", ")...

27.513158

15.138158

def initialise_modified_data(self): """ Initialise the modified_data if necessary """ if self.__modified_data__ is None: if self.__original_data__: self.__modified_data__ = list(self.__original_data__) else: self.__modified_data__ =...

[ "def", "initialise_modified_data", "(", "self", ")", ":", "if", "self", ".", "__modified_data__", "is", "None", ":", "if", "self", ".", "__original_data__", ":", "self", ".", "__modified_data__", "=", "list", "(", "self", ".", "__original_data__", ")", "else",...

35

8.111111

def ReadAllClientLabels(self, cursor=None): """Reads the user labels for a list of clients.""" cursor.execute("SELECT DISTINCT owner_username, label FROM client_labels") result = [] for owner, label in cursor.fetchall(): result.append(rdf_objects.ClientLabel(name=label, owner=owner)) result...

[ "def", "ReadAllClientLabels", "(", "self", ",", "cursor", "=", "None", ")", ":", "cursor", ".", "execute", "(", "\"SELECT DISTINCT owner_username, label FROM client_labels\"", ")", "result", "=", "[", "]", "for", "owner", ",", "label", "in", "cursor", ".", "fetc...

34.363636

23.636364

def Emulation_setEmulatedMedia(self, media): """ Function path: Emulation.setEmulatedMedia Domain: Emulation Method name: setEmulatedMedia Parameters: Required arguments: 'media' (type: string) -> Media type to emulate. Empty string disables the override. No return value. Description: ...

[ "def", "Emulation_setEmulatedMedia", "(", "self", ",", "media", ")", ":", "assert", "isinstance", "(", "media", ",", "(", "str", ",", ")", ")", ",", "\"Argument 'media' must be of type '['str']'. Received type: '%s'\"", "%", "type", "(", "media", ")", "subdom_funcs"...

31.473684

20.842105

def _new(self, dx_hash, **kwargs): ''' :param dx_hash: Standard hash populated in :func:`dxpy.bindings.DXDataObject.new()` containing attributes common to all data object classes. :type dx_hash: dict :param runSpec: Run specification :type runSpec: dict :param dxapi: API ...

[ "def", "_new", "(", "self", ",", "dx_hash", ",", "*", "*", "kwargs", ")", ":", "for", "field", "in", "'runSpec'", ",", "'dxapi'", ":", "if", "field", "not", "in", "kwargs", ":", "raise", "DXError", "(", "\"%s: Keyword argument %s is required\"", "%", "(", ...

44.422222

21.444444

def extract_date(cls, date_str): """ Tries to extract a `datetime` object from the given string, expecting date information only. Raises `DateTimeFormatterException` if the extraction fails. """ if not date_str: raise DateTimeFormatterException('date_str must...

[ "def", "extract_date", "(", "cls", ",", "date_str", ")", ":", "if", "not", "date_str", ":", "raise", "DateTimeFormatterException", "(", "'date_str must a valid string {}.'", ".", "format", "(", "date_str", ")", ")", "try", ":", "return", "cls", ".", "_extract_ti...

39.785714

24.357143

def generate_docs(self, clspath, more_content): """Generate documentation for this configman class""" obj = import_class(clspath) sourcename = 'docstring of %s' % clspath all_options = [] indent = ' ' config = obj.get_required_config() if config.options: ...

[ "def", "generate_docs", "(", "self", ",", "clspath", ",", "more_content", ")", ":", "obj", "=", "import_class", "(", "clspath", ")", "sourcename", "=", "'docstring of %s'", "%", "clspath", "all_options", "=", "[", "]", "indent", "=", "' '", "config", "=",...

41.22619

18.309524

def mark_deactivated(self,request,queryset): """An admin action for marking several cages as inactive. This action sets the selected cages as Active=False and Death=today. This admin action also shows as the output the number of mice sacrificed.""" rows_updated = queryset.update(Activ...

[ "def", "mark_deactivated", "(", "self", ",", "request", ",", "queryset", ")", ":", "rows_updated", "=", "queryset", ".", "update", "(", "Active", "=", "False", ",", "End", "=", "datetime", ".", "date", ".", "today", "(", ")", ")", "if", "rows_updated", ...

52.454545

20.363636

def limit(self, maximum): """ Return a new query, limited to a certain number of results. Unlike core reporting queries, you cannot specify a starting point for live queries, just the maximum results returned. ```python # first 50 query.limit(50) ``` ...

[ "def", "limit", "(", "self", ",", "maximum", ")", ":", "self", ".", "meta", "[", "'limit'", "]", "=", "maximum", "self", ".", "raw", ".", "update", "(", "{", "'max_results'", ":", "maximum", ",", "}", ")", "return", "self" ]

24.555556

21.222222