kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def vcs_rbridge_context_input_rbridge_id(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") vcs_rbridge_context = ET.Element("vcs_rbridge_context") config = vcs_rbridge_context input = ET.SubElement(vcs_rbridge_context, "input") rbridge_id =...	[ "def", "vcs_rbridge_context_input_rbridge_id", "(", "self", ",", "", "", "kwargs", ")", ":", "config", "=", "ET", ".", "Element", "(", "\"config\"", ")", "vcs_rbridge_context", "=", "ET", ".", "Element", "(", "\"vcs_rbridge_context\"", ")", "config", "=", "v...	40.5	13.083333
def only_owner(func): """ Only owner decorator Restricts access to view ony to profile owner """ def decorated(_, *kwargs): id = kwargs['id'] if not current_user.is_authenticated: abort(401) elif current_user.id != id: abort(403) return func(...	[ "def", "only_owner", "(", "func", ")", ":", "def", "decorated", "(", "", "_", ",", "", "*", "kwargs", ")", ":", "id", "=", "kwargs", "[", "'id'", "]", "if", "not", "current_user", ".", "is_authenticated", ":", "abort", "(", "401", ")", "elif", "c...	24.142857	13.142857
def run_samblaster(job, sam): """ Marks reads as PCR duplicates using SAMBLASTER :param JobFunctionWrappingJob job: passed automatically by Toil :param str sam: FileStoreID for SAM file :return: FileStoreID for deduped SAM file :rtype: str """ work_dir = job.fileStore.getLocalTempDir() ...	[ "def", "run_samblaster", "(", "job", ",", "sam", ")", ":", "work_dir", "=", "job", ".", "fileStore", ".", "getLocalTempDir", "(", ")", "job", ".", "fileStore", ".", "readGlobalFile", "(", "sam", ",", "os", ".", "path", ".", "join", "(", "work_dir", ","...	37.73913	14.173913
def _init_multicast_socket(self): """ Init multicast socket :rtype: None """ self.debug("()") # Create a UDP socket self._multicast_socket = socket.socket( socket.AF_INET, socket.SOCK_DGRAM ) # Allow reuse of addresses ...	[ "def", "_init_multicast_socket", "(", "self", ")", ":", "self", ".", "debug", "(", "\"()\"", ")", "# Create a UDP socket", "self", ".", "_multicast_socket", "=", "socket", ".", "socket", "(", "socket", ".", "AF_INET", ",", "socket", ".", "SOCK_DGRAM", ")", "...	29	16.636364
def generic_visit(self, node): """Called if no explicit visitor function exists for a node.""" for _, value in ast.iter_fields(node): if isinstance(value, list): self._handle_ast_list(value) for item in value: if isinstance(item, ast.AST): ...	[ "def", "generic_visit", "(", "self", ",", "node", ")", ":", "for", "_", ",", "value", "in", "ast", ".", "iter_fields", "(", "node", ")", ":", "if", "isinstance", "(", "value", ",", "list", ")", ":", "self", ".", "_handle_ast_list", "(", "value", ")",...	43	4.7
def parse_theme(self, xml): """ Parses a theme from XML returned by Kuler. Gets the theme's id, label and swatches. All of the swatches are converted to RGB. If we have a full description for a theme id in cache, parse that to get tags associated with the theme....	[ "def", "parse_theme", "(", "self", ",", "xml", ")", ":", "kt", "=", "KulerTheme", "(", ")", "kt", ".", "author", "=", "xml", ".", "getElementsByTagName", "(", "\"author\"", ")", "[", "0", "]", "kt", ".", "author", "=", "kt", ".", "author", ".", "ch...	37	14.765957
def _expand(self): """ Expand the free pool, if possible. If out of capacity w.r.t. the defined ID value range, ValueError is raised. """ assert not self._free # free pool is empty expand_end = self._expand_start + self._expand_len if expand_end > self._...	[ "def", "_expand", "(", "self", ")", ":", "assert", "not", "self", ".", "_free", "# free pool is empty", "expand_end", "=", "self", ".", "_expand_start", "+", "self", ".", "_expand_len", "if", "expand_end", ">", "self", ".", "_range_end", ":", "# This happens i...	40.117647	13.882353
def item(self, infohash, prefetch=None, cache=False): """ Fetch a single item by its info hash. """ return next(self.items(infohash, prefetch, cache))	[ "def", "item", "(", "self", ",", "infohash", ",", "prefetch", "=", "None", ",", "cache", "=", "False", ")", ":", "return", "next", "(", "self", ".", "items", "(", "infohash", ",", "prefetch", ",", "cache", ")", ")" ]	42.75	7.75
def html_serialize(self, attributes, max_length=None): """Returns concatenated HTML code with SPAN tag. Args: attributes (dict): A map of name-value pairs for attributes of output SPAN tags. max_length (:obj:`int`, optional): Maximum length of span enclosed chunk. Returns: The ...	[ "def", "html_serialize", "(", "self", ",", "attributes", ",", "max_length", "=", "None", ")", ":", "doc", "=", "ET", ".", "Element", "(", "'span'", ")", "for", "chunk", "in", "self", ":", "if", "(", "chunk", ".", "has_cjk", "(", ")", "and", "not", ...	33.921053	16.842105
def SingleModeCombine(pupils,modeDiameter=None): """ Return the instantaneous coherent fluxes and photometric fluxes for a multiway single-mode fibre combiner """ if modeDiameter is None: modeDiameter=0.9*pupils.shape[-1] amplitudes=FibreCouple(pupils,modeDiameter) cc=np.conj(amplitu...	[ "def", "SingleModeCombine", "(", "pupils", ",", "modeDiameter", "=", "None", ")", ":", "if", "modeDiameter", "is", "None", ":", "modeDiameter", "=", "0.9", "*", "pupils", ".", "shape", "[", "-", "1", "]", "amplitudes", "=", "FibreCouple", "(", "pupils", ...	36.357143	7.785714
def dot(self, vec): """Dot product with another vector""" if not isinstance(vec, self.__class__): raise TypeError('Dot product operand must be a VectorArray') if self.nV != 1 and vec.nV != 1 and self.nV != vec.nV: raise ValueError('Dot product operands must have the same ...	[ "def", "dot", "(", "self", ",", "vec", ")", ":", "if", "not", "isinstance", "(", "vec", ",", "self", ".", "__class__", ")", ":", "raise", "TypeError", "(", "'Dot product operand must be a VectorArray'", ")", "if", "self", ".", "nV", "!=", "1", "and", "ve...	55.75	20.375
def crt_prf_ftr_tc(aryMdlRsp, aryTmpExpInf, varNumVol, varTr, varTmpOvsmpl, switchHrfSet, tplPngSize, varPar, dctPrm=None, lgcPrint=True): """Create all spatial x feature prf time courses. Parameters ---------- aryMdlRsp : 2d numpy array, shape [n_x_pos * n_y_pos *...	[ "def", "crt_prf_ftr_tc", "(", "aryMdlRsp", ",", "aryTmpExpInf", ",", "varNumVol", ",", "varTr", ",", "varTmpOvsmpl", ",", "switchHrfSet", ",", "tplPngSize", ",", "varPar", ",", "dctPrm", "=", "None", ",", "lgcPrint", "=", "True", ")", ":", "# Identify number o...	40.130435	19.956522
def _get_format_name_loader_mapping(self): """ :return: Mappings of format-name and loader class. :rtype: dict """ loader_table = self._get_common_loader_mapping() loader_table.update( { "excel": ExcelTableFileLoader, "json_lin...	[ "def", "_get_format_name_loader_mapping", "(", "self", ")", ":", "loader_table", "=", "self", ".", "_get_common_loader_mapping", "(", ")", "loader_table", ".", "update", "(", "{", "\"excel\"", ":", "ExcelTableFileLoader", ",", "\"json_lines\"", ":", "JsonLinesTableTex...	29.833333	16.388889
async def jsk_vc_resume(self, ctx: commands.Context): """ Resumes a running audio source, if there is one. """ voice = ctx.guild.voice_client if not voice.is_paused(): return await ctx.send("Audio is not paused.") voice.resume() await ctx.send(f"Res...	[ "async", "def", "jsk_vc_resume", "(", "self", ",", "ctx", ":", "commands", ".", "Context", ")", ":", "voice", "=", "ctx", ".", "guild", ".", "voice_client", "if", "not", "voice", ".", "is_paused", "(", ")", ":", "return", "await", "ctx", ".", "send", ...	28.833333	18.166667
def _create_decoding_layers(self): """Create the decoding layers for reconstruction finetuning. :return: output of the final encoding layer. """ next_decode = self.encode for l, layer in reversed(list(enumerate(self.layers))): with tf.name_scope("decode-{}".format(...	[ "def", "_create_decoding_layers", "(", "self", ")", ":", "next_decode", "=", "self", ".", "encode", "for", "l", ",", "layer", "in", "reversed", "(", "list", "(", "enumerate", "(", "self", ".", "layers", ")", ")", ")", ":", "with", "tf", ".", "name_scop...	33.35	20.725
def get_port_from_port_server(portserver_address, pid=None): """Request a free a port from a system-wide portserver. This follows a very simple portserver protocol: The request consists of our pid (in ASCII) followed by a newline. The response is a port number and a newline, 0 on failure. This fun...	[ "def", "get_port_from_port_server", "(", "portserver_address", ",", "pid", "=", "None", ")", ":", "if", "not", "portserver_address", ":", "return", "None", "# An AF_UNIX address may start with a zero byte, in which case it is in the", "# \"abstract namespace\", and doesn't have any...	35.9375	22.03125
def format_currency(number, currency, format=None, locale=LC_NUMERIC, currency_digits=True, format_type='standard', decimal_quantization=True): """Return formatted currency value. >>> format_currency(1099.98, 'USD', locale='en_US') u'$1,099.98' >>> format_curren...	[ "def", "format_currency", "(", "number", ",", "currency", ",", "format", "=", "None", ",", "locale", "=", "LC_NUMERIC", ",", "currency_digits", "=", "True", ",", "format_type", "=", "'standard'", ",", "decimal_quantization", "=", "True", ")", ":", "locale", ...	38.923077	24.10989
def data_url_scheme(self): """Get svg in Data URL Scheme format. """ # TODO: move to web.app or make it function # remove #svg from dataframe encoded = base64.b64encode(self.contents().encode()) return "data:image/svg+xml;base64," + encoded.decode()	[ "def", "data_url_scheme", "(", "self", ")", ":", "# TODO: move to web.app or make it function", "# remove #svg from dataframe", "encoded", "=", "base64", ".", "b64encode", "(", "self", ".", "contents", "(", ")", ".", "encode", "(", ")", ")", "return", "\"data:image/...	41.571429	10.142857
def name(self, name): """Set the member name. Note that a member name cannot appear in other enums, or generally anywhere else in the IDB. """ success = idaapi.set_enum_member_name(self.cid, name) if not success: raise exceptions.CantRenameEnumMember( ...	[ "def", "name", "(", "self", ",", "name", ")", ":", "success", "=", "idaapi", ".", "set_enum_member_name", "(", "self", ".", "cid", ",", "name", ")", "if", "not", "success", ":", "raise", "exceptions", ".", "CantRenameEnumMember", "(", "\"Failed renaming {!r}...	41.2	21.6
def boll(self, n, dev, array=False): """布林通道""" mid = self.sma(n, array) std = self.std(n, array) up = mid + std * dev down = mid - std * dev return up, down	[ "def", "boll", "(", "self", ",", "n", ",", "dev", ",", "array", "=", "False", ")", ":", "mid", "=", "self", ".", "sma", "(", "n", ",", "array", ")", "std", "=", "self", ".", "std", "(", "n", ",", "array", ")", "up", "=", "mid", "+", "std", ...	22.111111	15.444444
def create_proforma_invoice(sender, instance, created, **kwargs): """ For every Order if there are defined billing_data creates invoice proforma, which is an order confirmation document """ if created: Invoice.create(instance, Invoice.INVOICE_TYPES['PROFORMA'])	[ "def", "create_proforma_invoice", "(", "sender", ",", "instance", ",", "created", ",", "", "", "kwargs", ")", ":", "if", "created", ":", "Invoice", ".", "create", "(", "instance", ",", "Invoice", ".", "INVOICE_TYPES", "[", "'PROFORMA'", "]", ")" ]	40.428571	17
def _check_cron_env(user, name, value=None): ''' Return the environment changes ''' if value is None: value = "" # Matching value set in salt.modules.cron._render_tab lst = __salt__['cron.list_tab'](user) for env in lst['env']: if name == ...	[ "def", "_check_cron_env", "(", "user", ",", "name", ",", "value", "=", "None", ")", ":", "if", "value", "is", "None", ":", "value", "=", "\"\"", "# Matching value set in salt.modules.cron._render_tab", "lst", "=", "__salt__", "[", "'cron.list_tab'", "]", "(", ...	29.133333	15.4
def p_literal_list(self, p): """literal_list : literal_list LITERAL \| LITERAL""" if len(p) == 3: p[0] = p[1] + [p[2][1:-1]] else: p[0] = [p[1][1:-1]]	[ "def", "p_literal_list", "(", "self", ",", "p", ")", ":", "if", "len", "(", "p", ")", "==", "3", ":", "p", "[", "0", "]", "=", "p", "[", "1", "]", "+", "[", "p", "[", "2", "]", "[", "1", ":", "-", "1", "]", "]", "else", ":", "p", "[",...	26.875	13.375
def get(self, agentml, user=None, key=None): """ Evaluate and return the current active topic :param user: The active user object :type user: agentml.User or None :param agentml: The active AgentML instance :type agentml: AgentML :param key: The user id (defau...	[ "def", "get", "(", "self", ",", "agentml", ",", "user", "=", "None", ",", "key", "=", "None", ")", ":", "user", "=", "agentml", ".", "get_user", "(", "key", ")", "if", "key", "else", "user", "if", "not", "user", ":", "return", "return", "user", "...	27.95	16.65
def wrap_io_os_err(e): '''Formats IO and OS error messages for wrapping in FSQExceptions''' msg = '' if e.strerror: msg = e.strerror if e.message: msg = ' '.join([e.message, msg]) if e.filename: msg = ': '.join([msg, e.filename]) return msg	[ "def", "wrap_io_os_err", "(", "e", ")", ":", "msg", "=", "''", "if", "e", ".", "strerror", ":", "msg", "=", "e", ".", "strerror", "if", "e", ".", "message", ":", "msg", "=", "' '", ".", "join", "(", "[", "e", ".", "message", ",", "msg", "]", ...	27.9	18.9
def list_cameras(): """ List all attached USB cameras that are supported by libgphoto2. :return: All recognized cameras :rtype: list of :py:class:`Camera` """ ctx = lib.gp_context_new() camlist_p = new_gp_object("CameraList") port_list_p = new_gp_object("GPPortInfoList") lib.gp_p...	[ "def", "list_cameras", "(", ")", ":", "ctx", "=", "lib", ".", "gp_context_new", "(", ")", "camlist_p", "=", "new_gp_object", "(", "\"CameraList\"", ")", "port_list_p", "=", "new_gp_object", "(", "\"GPPortInfoList\"", ")", "lib", ".", "gp_port_info_list_load", "(...	41.567568	15.405405
def hairball_files(self, paths, extensions): """Yield filepath to files with the proper extension within paths.""" def add_file(filename): return os.path.splitext(filename)[1] in extensions while paths: arg_path = paths.pop(0) if os.path.isdir(arg_path): ...	[ "def", "hairball_files", "(", "self", ",", "paths", ",", "extensions", ")", ":", "def", "add_file", "(", "filename", ")", ":", "return", "os", ".", "path", ".", "splitext", "(", "filename", ")", "[", "1", "]", "in", "extensions", "while", "paths", ":",...	44.695652	12.73913
def build(self, search, raw_query): """Build query. :param search: Search query instance :param raw_query: Raw query arguments dictionary """ unmatched_items = {} for expression, value in raw_query.items(): # Parse query expression into tokens. to...	[ "def", "build", "(", "self", ",", "search", ",", "raw_query", ")", ":", "unmatched_items", "=", "{", "}", "for", "expression", ",", "value", "in", "raw_query", ".", "items", "(", ")", ":", "# Parse query expression into tokens.", "tokens", "=", "expression", ...	41.214286	21.880952
def subscribe(self, topic, callback, ordered=True): """Subscribe to future messages in the given topic The contents of topic should be in the format created by self.publish with a sequence number of message type encoded as a json string. Wildcard topics containing + and # are allowed a...	[ "def", "subscribe", "(", "self", ",", "topic", ",", "callback", ",", "ordered", "=", "True", ")", ":", "if", "'+'", "in", "topic", "or", "'#'", "in", "topic", ":", "regex", "=", "re", ".", "compile", "(", "topic", ".", "replace", "(", "'+'", ",", ...	47.076923	29.423077
def _setup_resources(): """Attempt to increase resource limits up to hard limits. This allows us to avoid out of file handle limits where we can move beyond the soft limit up to the hard limit. """ target_procs = 10240 cur_proc, max_proc = resource.getrlimit(resource.RLIMIT_NPROC) target_pr...	[ "def", "_setup_resources", "(", ")", ":", "target_procs", "=", "10240", "cur_proc", ",", "max_proc", "=", "resource", ".", "getrlimit", "(", "resource", ".", "RLIMIT_NPROC", ")", "target_proc", "=", "min", "(", "max_proc", ",", "target_procs", ")", "if", "ma...	53.461538	25.615385
def matches(self, desc): """Determines if a given label descriptor matches this enum instance Args: desc (:class:`endpoints_management.gen.servicemanagement_v1_messages.LabelDescriptor`): the instance to test Return: `True` if desc is supported, otherwise `F...	[ "def", "matches", "(", "self", ",", "desc", ")", ":", "desc_value_type", "=", "desc", ".", "valueType", "or", "ValueType", ".", "STRING", "# default not parsed", "return", "(", "self", ".", "label_name", "==", "desc", ".", "key", "and", "self", ".", "value...	36.285714	23.5
def regenerate_models(self, propnames=None, exclude=[], deep=False): r""" Re-runs the specified model or models. Parameters ---------- propnames : string or list of strings The list of property names to be regenerated. If None are given then ALL models a...	[ "def", "regenerate_models", "(", "self", ",", "propnames", "=", "None", ",", "exclude", "=", "[", "]", ",", "deep", "=", "False", ")", ":", "# If empty list of propnames was given, do nothing and return", "if", "type", "(", "propnames", ")", "is", "list", "and",...	47.610169	23.627119
def _solve(self, x0, A, l, u, xmin, xmax): """ Solves using Python Interior Point Solver (PIPS). """ s = pips(self._costfcn, x0, A, l, u, xmin, xmax, self._consfcn, self._hessfcn, self.opt) return s	[ "def", "_solve", "(", "self", ",", "x0", ",", "A", ",", "l", ",", "u", ",", "xmin", ",", "xmax", ")", ":", "s", "=", "pips", "(", "self", ".", "_costfcn", ",", "x0", ",", "A", ",", "l", ",", "u", ",", "xmin", ",", "xmax", ",", "self", "."...	40.333333	9.666667
def write_config_file(self, f, comments): """This method write a sample file, with attributes, descriptions, sample values, required flags, using the configuration object properties. """ if comments: f.write("#####################################\n") f.wri...	[ "def", "write_config_file", "(", "self", ",", "f", ",", "comments", ")", ":", "if", "comments", ":", "f", ".", "write", "(", "\"#####################################\\n\"", ")", "f", ".", "write", "(", "\"# Section : \"", ")", "f", ".", "write", "(", "\"#\""...	40.222222	11.388889
def monitor_experiment(args): '''monitor the experiment''' if args.time <= 0: print_error('please input a positive integer as time interval, the unit is second.') exit(1) while True: try: os.system('clear') update_experiment() show_experiment_info(...	[ "def", "monitor_experiment", "(", "args", ")", ":", "if", "args", ".", "time", "<=", "0", ":", "print_error", "(", "'please input a positive integer as time interval, the unit is second.'", ")", "exit", "(", "1", ")", "while", "True", ":", "try", ":", "os", ".",...	30.5	16
def _muck_w_date(record): """muck with the date because EPW starts counting from 1 and goes to 24.""" # minute 60 is actually minute 0? temp_d = datetime.datetime(int(record['Year']), int(record['Month']), int(record['Day']), int(record['Hour']) % 24, ...	[ "def", "_muck_w_date", "(", "record", ")", ":", "# minute 60 is actually minute 0?", "temp_d", "=", "datetime", ".", "datetime", "(", "int", "(", "record", "[", "'Year'", "]", ")", ",", "int", "(", "record", "[", "'Month'", "]", ")", ",", "int", "(", "re...	49.6	18.5
def _unpack_body(self): """Unpack `body` replace it by the result.""" obj = self._get_body_instance() obj.unpack(self.body.value) self.body = obj	[ "def", "_unpack_body", "(", "self", ")", ":", "obj", "=", "self", ".", "_get_body_instance", "(", ")", "obj", ".", "unpack", "(", "self", ".", "body", ".", "value", ")", "self", ".", "body", "=", "obj" ]	34.6	8
def console_print_rect_ex( con: tcod.console.Console, x: int, y: int, w: int, h: int, flag: int, alignment: int, fmt: str, ) -> int: """Print a string constrained to a rectangle with blend and alignment. Returns: int: The number of lines of text once word-wrapped. ....	[ "def", "console_print_rect_ex", "(", "con", ":", "tcod", ".", "console", ".", "Console", ",", "x", ":", "int", ",", "y", ":", "int", ",", "w", ":", "int", ",", "h", ":", "int", ",", "flag", ":", "int", ",", "alignment", ":", "int", ",", "fmt", ...	22.173913	22.217391
def setupTable_VORG(self): """ Make the VORG table. This should not be called externally. Subclasses may override or supplement this method to handle the table creation in a different way if desired. """ if "VORG" not in self.tables: return ...	[ "def", "setupTable_VORG", "(", "self", ")", ":", "if", "\"VORG\"", "not", "in", "self", ".", "tables", ":", "return", "self", ".", "otf", "[", "\"VORG\"", "]", "=", "vorg", "=", "newTable", "(", "\"VORG\"", ")", "vorg", ".", "majorVersion", "=", "1", ...	39.208333	16.125
def validate_rmq_cluster_running_nodes(self, sentry_units): """Check that all rmq unit hostnames are represented in the cluster_status output of all units. :param host_names: dict of juju unit names to host names :param units: list of sentry unit pointers (all rmq units) :return...	[ "def", "validate_rmq_cluster_running_nodes", "(", "self", ",", "sentry_units", ")", ":", "host_names", "=", "self", ".", "get_unit_hostnames", "(", "sentry_units", ")", "errors", "=", "[", "]", "# Query every unit for cluster_status running nodes", "for", "query_unit", ...	47.482759	22.034483
def teardown(self): ''' cleanup the monitor data and ''' self.monitor_thread.stop() self.monitor_thread = None super(BaseMonitor, self).teardown()	[ "def", "teardown", "(", "self", ")", ":", "self", ".", "monitor_thread", ".", "stop", "(", ")", "self", ".", "monitor_thread", "=", "None", "super", "(", "BaseMonitor", ",", "self", ")", ".", "teardown", "(", ")" ]	26.857143	14
def main(): """Entrypoint for ``lander`` executable.""" args = parse_args() config_logger(args) logger = structlog.get_logger(__name__) if args.show_version: # only print the version print_version() sys.exit(0) version = pkg_resources.get_distribution('lander').version ...	[ "def", "main", "(", ")", ":", "args", "=", "parse_args", "(", ")", "config_logger", "(", "args", ")", "logger", "=", "structlog", ".", "get_logger", "(", "__name__", ")", "if", "args", ".", "show_version", ":", "# only print the version", "print_version", "(...	25.533333	18.7
def link_marked_atoms(self, atoms): """ Take a list of marked "interesting" atoms (heteroatoms, special carbons) and attempt to connect them, returning a list of disjoint groups of special atoms (and their connected hydrogens). :param atoms: set of marked "interesting" atoms, pr...	[ "def", "link_marked_atoms", "(", "self", ",", "atoms", ")", ":", "# We will add hydrogens to functional groups", "hydrogens", "=", "{", "n", "for", "n", "in", "self", ".", "molgraph", ".", "graph", ".", "nodes", "if", "str", "(", "self", ".", "species", "[",...	38.882353	20.764706
def get(url, **kwargs): """ Wrapper for `request.get` function to set params. """ headers = kwargs.get('headers', {}) headers['User-Agent'] = config.USER_AGENT # overwrite kwargs['headers'] = headers timeout = kwargs.get('timeout', config.TIMEOUT) kwargs['timeout'] = timeout kwargs...	[ "def", "get", "(", "url", ",", "", "", "kwargs", ")", ":", "headers", "=", "kwargs", ".", "get", "(", "'headers'", ",", "{", "}", ")", "headers", "[", "'User-Agent'", "]", "=", "config", ".", "USER_AGENT", "# overwrite", "kwargs", "[", "'headers'", ...	27.666667	13.666667
def insert(self, index: int, obj: Any) -> None: """ Inserts an item to the list as long as it is not None """ if obj is not None: super().insert(index, obj)	[ "def", "insert", "(", "self", ",", "index", ":", "int", ",", "obj", ":", "Any", ")", "->", "None", ":", "if", "obj", "is", "not", "None", ":", "super", "(", ")", ".", "insert", "(", "index", ",", "obj", ")" ]	45.25	5.5
def perform_initialization(self): '''Initialize the harvesting for a given job''' log.debug('Initializing backend') factory = HarvestJob if self.dryrun else HarvestJob.objects.create self.job = factory(status='initializing', started=datetime.now(), ...	[ "def", "perform_initialization", "(", "self", ")", ":", "log", ".", "debug", "(", "'Initializing backend'", ")", "factory", "=", "HarvestJob", "if", "self", ".", "dryrun", "else", "HarvestJob", ".", "objects", ".", "create", "self", ".", "job", "=", "factory...	36.282051	16.538462
def simplify(self, options=None): """ returns a dict describing a simple snapshot of this change, and its children if any. """ simple = { "class": type(self).__name__, "is_change": self.is_change(), "description": self.get_description(), ...	[ "def", "simplify", "(", "self", ",", "options", "=", "None", ")", ":", "simple", "=", "{", "\"class\"", ":", "type", "(", "self", ")", ".", "__name__", ",", "\"is_change\"", ":", "self", ".", "is_change", "(", ")", ",", "\"description\"", ":", "self", ...	25.423077	17.192308
def index_complement(index_list, len_=None): """ Returns the other indicies in a list of length ``len_`` """ mask1 = index_to_boolmask(index_list, len_) mask2 = not_list(mask1) index_list_bar = list_where(mask2) return index_list_bar	[ "def", "index_complement", "(", "index_list", ",", "len_", "=", "None", ")", ":", "mask1", "=", "index_to_boolmask", "(", "index_list", ",", "len_", ")", "mask2", "=", "not_list", "(", "mask1", ")", "index_list_bar", "=", "list_where", "(", "mask2", ")", "...	31.75	7.5
def list_connections(self, limit=500, offset=0): """List Points to which this Things is subscribed. I.e. list all the Points this Thing is following and controls it's attached to Returns subscription list e.g. #!python { "<Subscription GUID 1>": { ...	[ "def", "list_connections", "(", "self", ",", "limit", "=", "500", ",", "offset", "=", "0", ")", ":", "evt", "=", "self", ".", "_client", ".", "_request_sub_list", "(", "self", ".", "__lid", ",", "limit", "=", "limit", ",", "offset", "=", "offset", ")...	42.125	23.96875
def is_python_script(filename): '''Checks a file to see if it's a python script of some sort. ''' if filename.lower().endswith('.py'): return True if not os.path.isfile(filename): return False try: with open(filename, 'rb') as fp: if fp.read(2) != b'#!': ...	[ "def", "is_python_script", "(", "filename", ")", ":", "if", "filename", ".", "lower", "(", ")", ".", "endswith", "(", "'.py'", ")", ":", "return", "True", "if", "not", "os", ".", "path", ".", "isfile", "(", "filename", ")", ":", "return", "False", "t...	24.277778	20.833333
def calcMzFromMass(mass, charge): """Calculate the mz value of a peptide from its mass and charge. :param mass: float, exact non protonated mass :param charge: int, charge state :returns: mass to charge ratio of the specified charge state """ mz = (mass + (maspy.constants.atomicMassProton * ch...	[ "def", "calcMzFromMass", "(", "mass", ",", "charge", ")", ":", "mz", "=", "(", "mass", "+", "(", "maspy", ".", "constants", ".", "atomicMassProton", "*", "charge", ")", ")", "/", "charge", "return", "mz" ]	34	18.1
def is_extension_type(arr): """ Check whether an array-like is of a pandas extension class instance. Extension classes include categoricals, pandas sparse objects (i.e. classes represented within the pandas library and not ones external to it like scipy sparse matrices), and datetime-like arrays. ...	[ "def", "is_extension_type", "(", "arr", ")", ":", "if", "is_categorical", "(", "arr", ")", ":", "return", "True", "elif", "is_sparse", "(", "arr", ")", ":", "return", "True", "elif", "is_datetime64tz_dtype", "(", "arr", ")", ":", "return", "True", "return"...	25.245614	22.649123
def delete_session(sid_s): """Delete entries in the data- and kvsessionstore with the given sid_s. On a successful deletion, the flask-kvsession store returns 1 while the sqlalchemy datastore returns None. :param sid_s: The session ID. :returns: ``1`` if deletion was successful. """ # Remo...	[ "def", "delete_session", "(", "sid_s", ")", ":", "# Remove entries from sessionstore", "_sessionstore", ".", "delete", "(", "sid_s", ")", "# Find and remove the corresponding SessionActivity entry", "with", "db", ".", "session", ".", "begin_nested", "(", ")", ":", "Sess...	35.933333	15.4
def get_fieldset_index(fieldsets, index_or_name): """ Return the index of a fieldset in the ``fieldsets`` list. Args: fieldsets (list): The original ``fieldsets`` list. index_or_name (int or str): The value of the reference element, or directly its numeric index. Returns: (int)...	[ "def", "get_fieldset_index", "(", "fieldsets", ",", "index_or_name", ")", ":", "if", "isinstance", "(", "index_or_name", ",", "six", ".", "integer_types", ")", ":", "return", "index_or_name", "for", "key", ",", "value", "in", "enumerate", "(", "fieldsets", ")"...	32.473684	22.473684
def _ProcessImage(self, tag, wall_time, step, image): """Processes an image by adding it to accumulated state.""" event = ImageEvent(wall_time=wall_time, step=step, encoded_image_string=image.encoded_image_string, width=image.width, ...	[ "def", "_ProcessImage", "(", "self", ",", "tag", ",", "wall_time", ",", "step", ",", "image", ")", ":", "event", "=", "ImageEvent", "(", "wall_time", "=", "wall_time", ",", "step", "=", "step", ",", "encoded_image_string", "=", "image", ".", "encoded_image...	47.75	7.875
def _read_para_echo_request_unsigned(self, code, cbit, clen, *, desc, length, version): """Read HIP ECHO_REQUEST_UNSIGNED parameter. Structure of HIP ECHO_REQUEST_UNSIGNED parameter [RFC 7401]: 0 1 2 3 0 1 2 3 4 5 6 7 8 9 0...	[ "def", "_read_para_echo_request_unsigned", "(", "self", ",", "code", ",", "cbit", ",", "clen", ",", "*", ",", "desc", ",", "length", ",", "version", ")", ":", "_data", "=", "self", ".", "_read_fileng", "(", "clen", ")", "echo_request_unsigned", "=", "dict"...	43.666667	27.333333
def get_best_electronegativity_anonymous_mapping(self, struct1, struct2): """ Performs an anonymous fitting, which allows distinct species in one structure to map to another. E.g., to compare if the Li2O and Na2O structures are similar. If multiple substitutions are within tolerance ...	[ "def", "get_best_electronegativity_anonymous_mapping", "(", "self", ",", "struct1", ",", "struct2", ")", ":", "struct1", ",", "struct2", "=", "self", ".", "_process_species", "(", "[", "struct1", ",", "struct2", "]", ")", "struct1", ",", "struct2", ",", "fu", ...	41.451613	22.290323
def imbalance_metrics(data): """ Computes imbalance metric for a given dataset. Imbalance metric is equal to 0 when a dataset is perfectly balanced (i.e. number of in each class is exact). :param data : pandas.DataFrame A dataset in a panda's data frame :returns int A value of imbalan...	[ "def", "imbalance_metrics", "(", "data", ")", ":", "if", "not", "data", ":", "return", "0", "#imb - shows measure of inbalance within a dataset", "imb", "=", "0", "num_classes", "=", "float", "(", "len", "(", "Counter", "(", "data", ")", ")", ")", "for", "x"...	46.95	22.85
def address_from_digest(digest): # type: (Digest) -> Address """ Generates an address from a private key digest. """ address_trits = [0] * (Address.LEN * TRITS_PER_TRYTE) # type: List[int] sponge = Kerl() sponge.absorb(digest.as_trits()) sponge.squeeze(a...	[ "def", "address_from_digest", "(", "digest", ")", ":", "# type: (Digest) -> Address", "address_trits", "=", "[", "0", "]", "", "(", "Address", ".", "LEN", "", "TRITS_PER_TRYTE", ")", "# type: List[int]", "sponge", "=", "Kerl", "(", ")", "sponge", ".", "absor...	28.647059	15.470588
def wait_and_ignore(condition, timeout=WTF_TIMEOUT_MANAGER.NORMAL, sleep=0.5): ''' Waits wrapper that'll wait for the condition to become true, but will not error if the condition isn't met. Args: condition (lambda) - Lambda expression to wait for to evaluate to True. Kwargs: time...	[ "def", "wait_and_ignore", "(", "condition", ",", "timeout", "=", "WTF_TIMEOUT_MANAGER", ".", "NORMAL", ",", "sleep", "=", "0.5", ")", ":", "try", ":", "return", "wait_until", "(", "condition", ",", "timeout", ",", "sleep", ")", "except", ":", "pass" ]	29.575758	26.242424
def random_draw(self, size=None): """Draw random samples of the hyperparameters. Parameters ---------- size : None, int or array-like, optional The number/shape of samples to draw. If None, only one sample is returned. Default is None. """ ...	[ "def", "random_draw", "(", "self", ",", "size", "=", "None", ")", ":", "return", "scipy", ".", "asarray", "(", "[", "scipy", ".", "stats", ".", "norm", ".", "rvs", "(", "loc", "=", "m", ",", "scale", "=", "s", ",", "size", "=", "size", ")", "fo...	42	20.5
def get_output_jsonpath_with_name(self, sub_output=None): """If ExtractorProcessor has a name defined, return a JSONPath that has a filter on that name""" if self.name is None: return None output_jsonpath_field = self.get_output_jsonpath_field(sub_output) extractor_f...	[ "def", "get_output_jsonpath_with_name", "(", "self", ",", "sub_output", "=", "None", ")", ":", "if", "self", ".", "name", "is", "None", ":", "return", "None", "output_jsonpath_field", "=", "self", ".", "get_output_jsonpath_field", "(", "sub_output", ")", "extrac...	41.166667	18.25
def parse_argv(self, argv=None, location='Command line.'): """Parse command line arguments. args <list str> or None: The argument list to parse. None means use a copy of sys.argv. argv[0] is ignored. location = '' <str>: A user friendly string describ...	[ "def", "parse_argv", "(", "self", ",", "argv", "=", "None", ",", "location", "=", "'Command line.'", ")", ":", "if", "argv", "is", "None", ":", "argv", "=", "list", "(", "sys", ".", "argv", ")", "argv", ".", "pop", "(", "0", ")", "self", ".", "_p...	37.823529	16.470588
def orthographic_u_umlaut(sound: str) -> str: """ >>> OldNorsePhonology.orthographic_u_umlaut("a") 'ö' >>> OldNorsePhonology.orthographic_u_umlaut("e") 'e' :param sound: :return: """ if sound in OldNorsePhonology.U_UMLAUT: return OldNo...	[ "def", "orthographic_u_umlaut", "(", "sound", ":", "str", ")", "->", "str", ":", "if", "sound", "in", "OldNorsePhonology", ".", "U_UMLAUT", ":", "return", "OldNorsePhonology", ".", "U_UMLAUT", "[", "sound", "]", "else", ":", "return", "sound" ]	26.714286	17.142857
def change_first_point_by_coords(self, x, y, max_distance=1e-4, raise_if_too_far_away=True): """ Set the first point of the exterior to the given point based on its coordinates. If multiple points are found, the closest one will be picked. If no matc...	[ "def", "change_first_point_by_coords", "(", "self", ",", "x", ",", "y", ",", "max_distance", "=", "1e-4", ",", "raise_if_too_far_away", "=", "True", ")", ":", "if", "len", "(", "self", ".", "exterior", ")", "==", "0", ":", "raise", "Exception", "(", "\"C...	37.659574	25.06383
def getSelectedTab(tabs, forURL): """ Returns the tab that should be selected when the current resource lives at C{forURL}. Call me after L{setTabURLs} @param tabs: sequence of L{Tab} instances @param forURL: L{nevow.url.URL} @return: L{Tab} instance """ flatTabs = [] def flatte...	[ "def", "getSelectedTab", "(", "tabs", ",", "forURL", ")", ":", "flatTabs", "=", "[", "]", "def", "flatten", "(", "tabs", ")", ":", "for", "t", "in", "tabs", ":", "flatTabs", ".", "append", "(", "t", ")", "flatten", "(", "t", ".", "children", ")", ...	22.257143	19.685714
def __calculate_links(self, cluster1, cluster2): """! @brief Returns number of link between two clusters. @details Link between objects (points) exists only if distance between them less than connectivity radius. @param[in] cluster1 (list): The first cluster. @par...	[ "def", "__calculate_links", "(", "self", ",", "cluster1", ",", "cluster2", ")", ":", "number_links", "=", "0", "for", "index1", "in", "cluster1", ":", "for", "index2", "in", "cluster2", ":", "number_links", "+=", "self", ".", "__adjacency_matrix", "[", "inde...	35.736842	21.368421
def partition_dict(items, key): """ Given an ordered dictionary of items and a key in that dict, return an ordered dict of items before, the keyed item, and an ordered dict of items after. >>> od = collections.OrderedDict(zip(range(5), 'abcde')) >>> before, item, after = partition_dict(od, 3) >>> before Ordere...	[ "def", "partition_dict", "(", "items", ",", "key", ")", ":", "def", "unmatched", "(", "pair", ")", ":", "test_key", ",", "item", ",", "=", "pair", "return", "test_key", "!=", "key", "items_iter", "=", "iter", "(", "items", ".", "items", "(", ")", ")"...	27.028571	19.885714
def _convert_nest_to_flat(self, params, _result=None, _prefix=None): """ Convert a data structure that looks like:: {"foo": {"bar": "baz", "shimmy": "sham"}} to:: {"foo.bar": "baz", "foo.shimmy": "sham"} This is the inverse of L{_convert_flat_to_n...	[ "def", "_convert_nest_to_flat", "(", "self", ",", "params", ",", "_result", "=", "None", ",", "_prefix", "=", "None", ")", ":", "if", "_result", "is", "None", ":", "_result", "=", "{", "}", "for", "k", ",", "v", "in", "params", ".", "iteritems", "(",...	28.4	17.52
def set_value(self, treeiter, column, value): """ {{ all }} `value` can also be a Python value and will be converted to a :obj:`GObject.Value` using the corresponding column type (See :obj:`Gtk.ListStore.set_column_types`\\()). """ value = self._convert_value(co...	[ "def", "set_value", "(", "self", ",", "treeiter", ",", "column", ",", "value", ")", ":", "value", "=", "self", ".", "_convert_value", "(", "column", ",", "value", ")", "Gtk", ".", "ListStore", ".", "set_value", "(", "self", ",", "treeiter", ",", "colum...	35	19
def new_cells_from_excel( self, book, range_, sheet=None, names_row=None, param_cols=None, param_order=None, transpose=False, names_col=None, param_rows=None, ): """Create multiple cells from an Excel range. This method...	[ "def", "new_cells_from_excel", "(", "self", ",", "book", ",", "range_", ",", "sheet", "=", "None", ",", "names_row", "=", "None", ",", "param_cols", "=", "None", ",", "param_order", "=", "None", ",", "transpose", "=", "False", ",", "names_col", "=", "Non...	43.520408	21.540816
def get_targets(conn=None): """ get_brain_targets function from Brain.Targets table. :return: <generator> yields dict objects """ targets = RBT results = targets.run(conn) for item in results: yield item	[ "def", "get_targets", "(", "conn", "=", "None", ")", ":", "targets", "=", "RBT", "results", "=", "targets", ".", "run", "(", "conn", ")", "for", "item", "in", "results", ":", "yield", "item" ]	23.1	14.3
def create_project_connection(self, create_connection_inputs, project): """CreateProjectConnection. [Preview API] Creates a new Pipeline connection between the provider installation and the specified project. Returns the PipelineConnection object created. :param :class:`<CreatePipelineConnection...	[ "def", "create_project_connection", "(", "self", ",", "create_connection_inputs", ",", "project", ")", ":", "query_parameters", "=", "{", "}", "if", "project", "is", "not", "None", ":", "query_parameters", "[", "'project'", "]", "=", "self", ".", "_serialize", ...	67.764706	33.647059
def main(): """The main function. These are the steps performed for the data clean up: 1. Prints the version number. 2. Reads the configuration file (:py:func:`read_config_file`). 3. Creates a new directory with ``data_clean_up`` as prefix and the date and time as suffix. 4. Check the i...	[ "def", "main", "(", ")", ":", "# Getting and checking the options", "args", "=", "parse_args", "(", ")", "check_args", "(", "args", ")", "# The directory name", "dirname", "=", "\"data_clean_up.\"", "dirname", "+=", "datetime", ".", "datetime", ".", "today", "(", ...	36.80203	19.106599
def calc_n_coarse_chan(self, chan_bw=None): """ This makes an attempt to calculate the number of coarse channels in a given file. Note: This is unlikely to work on non-Breakthrough Listen data, as a-priori knowledge of the digitizer system is required. """ ...	[ "def", "calc_n_coarse_chan", "(", "self", ",", "chan_bw", "=", "None", ")", ":", "nchans", "=", "int", "(", "self", ".", "header", "[", "b'nchans'", "]", ")", "# Do we have a file with enough channels that it has coarse channelization?", "if", "chan_bw", "is", "not"...	47.611111	18.555556
def do_alarm_definition_patch(mc, args): '''Patch the alarm definition.''' fields = {} fields['alarm_id'] = args.id if args.name: fields['name'] = args.name if args.description: fields['description'] = args.description if args.expression: fields['expression'] = args.expre...	[ "def", "do_alarm_definition_patch", "(", "mc", ",", "args", ")", ":", "fields", "=", "{", "}", "fields", "[", "'alarm_id'", "]", "=", "args", ".", "id", "if", "args", ".", "name", ":", "fields", "[", "'name'", "]", "=", "args", ".", "name", "if", "...	41.764706	18.764706
def _pid_to_id(self, pid): """Converts a pid to a URI that can be used as an OAI-ORE identifier.""" return d1_common.url.joinPathElements( self._base_url, self._version_tag, "resolve", d1_common.url.encodePathElement(pid), )	[ "def", "_pid_to_id", "(", "self", ",", "pid", ")", ":", "return", "d1_common", ".", "url", ".", "joinPathElements", "(", "self", ".", "_base_url", ",", "self", ".", "_version_tag", ",", "\"resolve\"", ",", "d1_common", ".", "url", ".", "encodePathElement", ...	36.125	12.625
async def import_aggregated(self, async_client, pid): """Import the SciObj at {pid}. If the SciObj is a Resource Map, also recursively import the aggregated objects. """ self._logger.info('Importing: {}'.format(pid)) task_set = set() object_info_pyxb = d1_common.types...	[ "async", "def", "import_aggregated", "(", "self", ",", "async_client", ",", "pid", ")", ":", "self", ".", "_logger", ".", "info", "(", "'Importing: {}'", ".", "format", "(", "pid", ")", ")", "task_set", "=", "set", "(", ")", "object_info_pyxb", "=", "d1_...	34.294118	25.970588
def generate_pseudo(strain_states, order=3): """ Generates the pseudoinverse for a given set of strains. Args: strain_states (6xN array like): a list of voigt-notation "strain-states", i. e. perturbed indices of the strain as a function of the smallest strain e. g. (0, 1, 0,...	[ "def", "generate_pseudo", "(", "strain_states", ",", "order", "=", "3", ")", ":", "s", "=", "sp", ".", "Symbol", "(", "'s'", ")", "nstates", "=", "len", "(", "strain_states", ")", "ni", "=", "np", ".", "array", "(", "strain_states", ")", "*", "s", ...	39.512821	14.538462
def _pirls(self, X, Y, weights): """ Performs stable PIRLS iterations to estimate GAM coefficients Parameters --------- X : array-like of shape (n_samples, m_features) containing input data Y : array-like of shape (n,) containing target data ...	[ "def", "_pirls", "(", "self", ",", "X", ",", "Y", ",", "weights", ")", ":", "modelmat", "=", "self", ".", "_modelmat", "(", "X", ")", "# build a basis matrix for the GLM", "n", ",", "m", "=", "modelmat", ".", "shape", "# initialize GLM coefficients if model is...	34.831776	21.224299
def create_key_ring( self, parent, key_ring_id, key_ring, retry=google.api_core.gapic_v1.method.DEFAULT, timeout=google.api_core.gapic_v1.method.DEFAULT, metadata=None, ): """ Create a new ``KeyRing`` in a given Project and Location. E...	[ "def", "create_key_ring", "(", "self", ",", "parent", ",", "key_ring_id", ",", "key_ring", ",", "retry", "=", "google", ".", "api_core", ".", "gapic_v1", ".", "method", ".", "DEFAULT", ",", "timeout", "=", "google", ".", "api_core", ".", "gapic_v1", ".", ...	41.105882	24.517647
def _extract_functions(resources): """ Extracts and returns function information from the given dictionary of SAM/CloudFormation resources. This method supports functions defined with AWS::Serverless::Function and AWS::Lambda::Function :param dict resources: Dictionary of SAM/CloudForma...	[ "def", "_extract_functions", "(", "resources", ")", ":", "result", "=", "{", "}", "for", "name", ",", "resource", "in", "resources", ".", "items", "(", ")", ":", "resource_type", "=", "resource", ".", "get", "(", "\"Type\"", ")", "resource_properties", "="...	48.964286	37.178571
def check_overlap(current, hit, overlap = 200): """ determine if sequence has already hit the same part of the model, indicating that this hit is for another 16S rRNA gene """ for prev in current: p_coords = prev[2:4] coords = hit[2:4] if get_overlap(coords, p_coords) >= over...	[ "def", "check_overlap", "(", "current", ",", "hit", ",", "overlap", "=", "200", ")", ":", "for", "prev", "in", "current", ":", "p_coords", "=", "prev", "[", "2", ":", "4", "]", "coords", "=", "hit", "[", "2", ":", "4", "]", "if", "get_overlap", "...	32.272727	13.545455
def _get_repo_file(self, repo_path): """ Lazy load RepoFile objects on demand. :param repo_path: :return: """ if repo_path not in self._repo_files: self._repo_files[repo_path] = RepoFile(repo_path) return self._repo_files[repo_path]	[ "def", "_get_repo_file", "(", "self", ",", "repo_path", ")", ":", "if", "repo_path", "not", "in", "self", ".", "_repo_files", ":", "self", ".", "_repo_files", "[", "repo_path", "]", "=", "RepoFile", "(", "repo_path", ")", "return", "self", ".", "_repo_file...	32.444444	8.444444
def write_languages(f, l): """Write language information.""" f.write("Languages = {%s" % os.linesep) for lang in sorted(l): f.write(" %r: %r,%s" % (lang, l[lang], os.linesep)) f.write("}%s" % os.linesep)	[ "def", "write_languages", "(", "f", ",", "l", ")", ":", "f", ".", "write", "(", "\"Languages = {%s\"", "%", "os", ".", "linesep", ")", "for", "lang", "in", "sorted", "(", "l", ")", ":", "f", ".", "write", "(", "\" %r: %r,%s\"", "%", "(", "lang", ...	37.5	10.333333
def get_icohp_dict_of_site(self, site, minsummedicohp=None, maxsummedicohp=None, minbondlength=0.0, maxbondlength=8.0, only_bonds_to=None): """ get a dict of IcohpValue for a certain site (indicated by integer) Args: site: integer describing the site of...	[ "def", "get_icohp_dict_of_site", "(", "self", ",", "site", ",", "minsummedicohp", "=", "None", ",", "maxsummedicohp", "=", "None", ",", "minbondlength", "=", "0.0", ",", "maxbondlength", "=", "8.0", ",", "only_bonds_to", "=", "None", ")", ":", "newicohp_dict",...	57.304348	29.608696
def RSA_encrypt(public_key, message): '''用RSA加密字符串. public_key - 公钥 message - 要加密的信息, 使用UTF-8编码的字符串 @return - 使用base64编码的字符串 ''' # 如果没能成功导入RSA模块, 就直接返回空白字符串. if not globals().get('RSA'): return '' rsakey = RSA.importKey(public_key) rsakey = PKCS1_v1_5.new(rsakey) e...	[ "def", "RSA_encrypt", "(", "public_key", ",", "message", ")", ":", "# 如果没能成功导入RSA模块, 就直接返回空白字符串.", "if", "not", "globals", "(", ")", ".", "get", "(", "'RSA'", ")", ":", "return", "''", "rsakey", "=", "RSA", ".", "importKey", "(", "public_key", ")", "rsakey...	29.928571	15.214286
def admin_tools_render_dashboard(context, location='index', dashboard=None): """ Template tag that renders the dashboard, it takes two optional arguments: ``location`` The location of the dashboard, it can be 'index' (for the admin index dashboard) or 'app_index' (for the app index dashboar...	[ "def", "admin_tools_render_dashboard", "(", "context", ",", "location", "=", "'index'", ",", "dashboard", "=", "None", ")", ":", "if", "dashboard", "is", "None", ":", "dashboard", "=", "get_dashboard", "(", "context", ",", "location", ")", "dashboard", ".", ...	34.42	20.1
def _write_to_error(self, s, truncate=False): """Writes the given output to the error file, appending unless `truncate` is True.""" # if truncate is True, set write mode to truncate with open(self._errorfile, 'w' if truncate else 'a') as fp: fp.writelines((to_text(s)), )	[ "def", "_write_to_error", "(", "self", ",", "s", ",", "truncate", "=", "False", ")", ":", "# if truncate is True, set write mode to truncate", "with", "open", "(", "self", ".", "_errorfile", ",", "'w'", "if", "truncate", "else", "'a'", ")", "as", "fp", ":", ...	60.6	10
def working_yesterday(self, date_from=None, date_format=None): """ Retourne la date d'hier depuis maintenant ou depuis une date fournie seulement sur les jours ouvrableq. Ainsi lundi devient samedi et samedi devient vendredi :param: :date_from date de référence :return datetime """ # date d'hier que su...	[ "def", "working_yesterday", "(", "self", ",", "date_from", "=", "None", ",", "date_format", "=", "None", ")", ":", "# date d'hier que sur les jours de week-end", "return", "self", ".", "delta", "(", "days", "=", "-", "1", ",", "date_from", "=", "date_from", ",...	39.909091	18.636364
def from_ros_pose_msg(pose_msg, from_frame='unassigned', to_frame='world'): """Creates a RigidTransform from a ROS pose msg. Parameters ---------- pose_msg : :obj:`geometry_msgs.msg.Pose` ROS pose message "...	[ "def", "from_ros_pose_msg", "(", "pose_msg", ",", "from_frame", "=", "'unassigned'", ",", "to_frame", "=", "'world'", ")", ":", "quaternion", "=", "np", ".", "array", "(", "[", "pose_msg", ".", "orientation", ".", "w", ",", "pose_msg", ".", "orientation", ...	40.818182	12.090909
def get_rtr_name(self, router_id): """Retrieve the router name. Incomplete. """ try: body = {} router = self.neutronclient.show_router(router_id, body=body) return router.get('router').get('name') except Exception as exc: LOG.error("Failed to show ...	[ "def", "get_rtr_name", "(", "self", ",", "router_id", ")", ":", "try", ":", "body", "=", "{", "}", "router", "=", "self", ".", "neutronclient", ".", "show_router", "(", "router_id", ",", "body", "=", "body", ")", "return", "router", ".", "get", "(", ...	45.555556	17.777778
def isLoopback (self, ifname): """Check whether interface is a loopback device. @param ifname: interface name @type ifname: string """ # since not all systems have IFF_LOOPBACK as a flag defined, # the ifname is tested first if ifname.startswith('lo'): ...	[ "def", "isLoopback", "(", "self", ",", "ifname", ")", ":", "# since not all systems have IFF_LOOPBACK as a flag defined,", "# the ifname is tested first", "if", "ifname", ".", "startswith", "(", "'lo'", ")", ":", "return", "True", "return", "(", "self", ".", "getFlags...	38.7	10.2
def inject(self, request, response): """ Inject the debug toolbar iframe into an HTML response. """ # called in host app if not isinstance(response, Response): return settings = request.app[APP_KEY]['settings'] response_html = response.body rou...	[ "def", "inject", "(", "self", ",", "request", ",", "response", ")", ":", "# called in host app", "if", "not", "isinstance", "(", "response", ",", "Response", ")", ":", "return", "settings", "=", "request", ".", "app", "[", "APP_KEY", "]", "[", "'settings'"...	39.1	15.233333
def parse_oxide(self): """ Determines if an oxide is a peroxide/superoxide/ozonide/normal oxide. Returns: oxide_type (str): Type of oxide ozonide/peroxide/superoxide/hydroxide/None. nbonds (int): Number of peroxide/superoxide/hydroxide bonds in st...	[ "def", "parse_oxide", "(", "self", ")", ":", "structure", "=", "self", ".", "structure", "relative_cutoff", "=", "self", ".", "relative_cutoff", "o_sites_frac_coords", "=", "[", "]", "h_sites_frac_coords", "=", "[", "]", "lattice", "=", "structure", ".", "latt...	39	15.873239
def get_extensions_assigned_to_user(self, user_id): """GetExtensionsAssignedToUser. [Preview API] Returns extensions that are currently assigned to the user in the account :param str user_id: The user's identity id. :rtype: {LicensingSource} """ route_values = {} ...	[ "def", "get_extensions_assigned_to_user", "(", "self", ",", "user_id", ")", ":", "route_values", "=", "{", "}", "if", "user_id", "is", "not", "None", ":", "route_values", "[", "'userId'", "]", "=", "self", ".", "_serialize", ".", "url", "(", "'user_id'", "...	53.285714	19.857143
def get_unverified_claims(token): """Returns the decoded claims without verification of any kind. Args: token (str): A signed JWT to decode the headers from. Returns: dict: The dict representation of the token claims. Raises: JWTError: If there is an exception decoding the tok...	[ "def", "get_unverified_claims", "(", "token", ")", ":", "try", ":", "claims", "=", "jws", ".", "get_unverified_claims", "(", "token", ")", "except", ":", "raise", "JWTError", "(", "'Error decoding token claims.'", ")", "try", ":", "claims", "=", "json", ".", ...	27.269231	23.269231
def _chooseBestSegmentPerCell(cls, connections, cells, allMatchingSegments, potentialOverlaps): """ For each specified cell, choose its matching segment with largest number of acti...	[ "def", "_chooseBestSegmentPerCell", "(", "cls", ",", "connections", ",", "cells", ",", "allMatchingSegments", ",", "potentialOverlaps", ")", ":", "candidateSegments", "=", "connections", ".", "filterSegmentsByCell", "(", "allMatchingSegments", ",", "cells", ")", "# Na...	38.285714	19.357143
def render_template(template_name_or_list, **context): """Renders a template from the template folder with the given context. :param template_name_or_list: the name of the template to be rendered, or an iterable with template names the fir...	[ "def", "render_template", "(", "template_name_or_list", ",", "", "", "context", ")", ":", "ctx", "=", "_app_ctx_stack", ".", "top", "ctx", ".", "app", ".", "update_template_context", "(", "context", ")", "return", "_render", "(", "ctx", ".", "app", ".", ...	46.642857	19.214286
def set_title(self,table=None,title=None,verbose=None): """ Changes the visible identifier of a single table. :param table (string, optional): Specifies a table by table name. If the pr efix SUID: is used, the table corresponding the SUID will be returne d. :para...	[ "def", "set_title", "(", "self", ",", "table", "=", "None", ",", "title", "=", "None", ",", "verbose", "=", "None", ")", ":", "PARAMS", "=", "set_param", "(", "[", "'table'", ",", "'title'", "]", ",", "[", "table", ",", "title", "]", ")", "response...	45.230769	25.692308

def vcs_rbridge_context_input_rbridge_id(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") vcs_rbridge_context = ET.Element("vcs_rbridge_context") config = vcs_rbridge_context input = ET.SubElement(vcs_rbridge_context, "input") rbridge_id =...

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def only_owner(func): """ Only owner decorator Restricts access to view ony to profile owner """ def decorated(*_, **kwargs): id = kwargs['id'] if not current_user.is_authenticated: abort(401) elif current_user.id != id: abort(403) return func(...

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def run_samblaster(job, sam): """ Marks reads as PCR duplicates using SAMBLASTER :param JobFunctionWrappingJob job: passed automatically by Toil :param str sam: FileStoreID for SAM file :return: FileStoreID for deduped SAM file :rtype: str """ work_dir = job.fileStore.getLocalTempDir() ...

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def _init_multicast_socket(self): """ Init multicast socket :rtype: None """ self.debug("()") # Create a UDP socket self._multicast_socket = socket.socket( socket.AF_INET, socket.SOCK_DGRAM ) # Allow reuse of addresses ...

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def generic_visit(self, node): """Called if no explicit visitor function exists for a node.""" for _, value in ast.iter_fields(node): if isinstance(value, list): self._handle_ast_list(value) for item in value: if isinstance(item, ast.AST): ...

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def parse_theme(self, xml): """ Parses a theme from XML returned by Kuler. Gets the theme's id, label and swatches. All of the swatches are converted to RGB. If we have a full description for a theme id in cache, parse that to get tags associated with the theme....

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def _expand(self): """ Expand the free pool, if possible. If out of capacity w.r.t. the defined ID value range, ValueError is raised. """ assert not self._free # free pool is empty expand_end = self._expand_start + self._expand_len if expand_end > self._...

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def item(self, infohash, prefetch=None, cache=False): """ Fetch a single item by its info hash. """ return next(self.items(infohash, prefetch, cache))

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def html_serialize(self, attributes, max_length=None): """Returns concatenated HTML code with SPAN tag. Args: attributes (dict): A map of name-value pairs for attributes of output SPAN tags. max_length (:obj:`int`, optional): Maximum length of span enclosed chunk. Returns: The ...

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def SingleModeCombine(pupils,modeDiameter=None): """ Return the instantaneous coherent fluxes and photometric fluxes for a multiway single-mode fibre combiner """ if modeDiameter is None: modeDiameter=0.9*pupils.shape[-1] amplitudes=FibreCouple(pupils,modeDiameter) cc=np.conj(amplitu...

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def dot(self, vec): """Dot product with another vector""" if not isinstance(vec, self.__class__): raise TypeError('Dot product operand must be a VectorArray') if self.nV != 1 and vec.nV != 1 and self.nV != vec.nV: raise ValueError('Dot product operands must have the same ...

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def crt_prf_ftr_tc(aryMdlRsp, aryTmpExpInf, varNumVol, varTr, varTmpOvsmpl, switchHrfSet, tplPngSize, varPar, dctPrm=None, lgcPrint=True): """Create all spatial x feature prf time courses. Parameters ---------- aryMdlRsp : 2d numpy array, shape [n_x_pos * n_y_pos *...

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def _get_format_name_loader_mapping(self): """ :return: Mappings of format-name and loader class. :rtype: dict """ loader_table = self._get_common_loader_mapping() loader_table.update( { "excel": ExcelTableFileLoader, "json_lin...

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async def jsk_vc_resume(self, ctx: commands.Context): """ Resumes a running audio source, if there is one. """ voice = ctx.guild.voice_client if not voice.is_paused(): return await ctx.send("Audio is not paused.") voice.resume() await ctx.send(f"Res...

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def _create_decoding_layers(self): """Create the decoding layers for reconstruction finetuning. :return: output of the final encoding layer. """ next_decode = self.encode for l, layer in reversed(list(enumerate(self.layers))): with tf.name_scope("decode-{}".format(...

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33.35

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def get_port_from_port_server(portserver_address, pid=None): """Request a free a port from a system-wide portserver. This follows a very simple portserver protocol: The request consists of our pid (in ASCII) followed by a newline. The response is a port number and a newline, 0 on failure. This fun...

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def format_currency(number, currency, format=None, locale=LC_NUMERIC, currency_digits=True, format_type='standard', decimal_quantization=True): """Return formatted currency value. >>> format_currency(1099.98, 'USD', locale='en_US') u'$1,099.98' >>> format_curren...

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def data_url_scheme(self): """Get svg in Data URL Scheme format. """ # TODO: move to web.app or make it function # remove #svg from dataframe encoded = base64.b64encode(self.contents().encode()) return "data:image/svg+xml;base64," + encoded.decode()

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def name(self, name): """Set the member name. Note that a member name cannot appear in other enums, or generally anywhere else in the IDB. """ success = idaapi.set_enum_member_name(self.cid, name) if not success: raise exceptions.CantRenameEnumMember( ...

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41.2

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def boll(self, n, dev, array=False): """布林通道""" mid = self.sma(n, array) std = self.std(n, array) up = mid + std * dev down = mid - std * dev return up, down

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def create_proforma_invoice(sender, instance, created, **kwargs): """ For every Order if there are defined billing_data creates invoice proforma, which is an order confirmation document """ if created: Invoice.create(instance, Invoice.INVOICE_TYPES['PROFORMA'])

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40.428571

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def _check_cron_env(user, name, value=None): ''' Return the environment changes ''' if value is None: value = "" # Matching value set in salt.modules.cron._render_tab lst = __salt__['cron.list_tab'](user) for env in lst['env']: if name == ...

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29.133333

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def p_literal_list(self, p): """literal_list : literal_list LITERAL | LITERAL""" if len(p) == 3: p[0] = p[1] + [p[2][1:-1]] else: p[0] = [p[1][1:-1]]

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def get(self, agentml, user=None, key=None): """ Evaluate and return the current active topic :param user: The active user object :type user: agentml.User or None :param agentml: The active AgentML instance :type agentml: AgentML :param key: The user id (defau...

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27.95

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def wrap_io_os_err(e): '''Formats IO and OS error messages for wrapping in FSQExceptions''' msg = '' if e.strerror: msg = e.strerror if e.message: msg = ' '.join([e.message, msg]) if e.filename: msg = ': '.join([msg, e.filename]) return msg

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def list_cameras(): """ List all attached USB cameras that are supported by libgphoto2. :return: All recognized cameras :rtype: list of :py:class:`Camera` """ ctx = lib.gp_context_new() camlist_p = new_gp_object("CameraList") port_list_p = new_gp_object("GPPortInfoList") lib.gp_p...

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def hairball_files(self, paths, extensions): """Yield filepath to files with the proper extension within paths.""" def add_file(filename): return os.path.splitext(filename)[1] in extensions while paths: arg_path = paths.pop(0) if os.path.isdir(arg_path): ...

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def build(self, search, raw_query): """Build query. :param search: Search query instance :param raw_query: Raw query arguments dictionary """ unmatched_items = {} for expression, value in raw_query.items(): # Parse query expression into tokens. to...

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def subscribe(self, topic, callback, ordered=True): """Subscribe to future messages in the given topic The contents of topic should be in the format created by self.publish with a sequence number of message type encoded as a json string. Wildcard topics containing + and # are allowed a...

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def _setup_resources(): """Attempt to increase resource limits up to hard limits. This allows us to avoid out of file handle limits where we can move beyond the soft limit up to the hard limit. """ target_procs = 10240 cur_proc, max_proc = resource.getrlimit(resource.RLIMIT_NPROC) target_pr...

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53.461538

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def matches(self, desc): """Determines if a given label descriptor matches this enum instance Args: desc (:class:`endpoints_management.gen.servicemanagement_v1_messages.LabelDescriptor`): the instance to test Return: `True` if desc is supported, otherwise `F...

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36.285714

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def regenerate_models(self, propnames=None, exclude=[], deep=False): r""" Re-runs the specified model or models. Parameters ---------- propnames : string or list of strings The list of property names to be regenerated. If None are given then ALL models a...

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def _solve(self, x0, A, l, u, xmin, xmax): """ Solves using Python Interior Point Solver (PIPS). """ s = pips(self._costfcn, x0, A, l, u, xmin, xmax, self._consfcn, self._hessfcn, self.opt) return s

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def write_config_file(self, f, comments): """This method write a sample file, with attributes, descriptions, sample values, required flags, using the configuration object properties. """ if comments: f.write("#####################################\n") f.wri...

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def monitor_experiment(args): '''monitor the experiment''' if args.time <= 0: print_error('please input a positive integer as time interval, the unit is second.') exit(1) while True: try: os.system('clear') update_experiment() show_experiment_info(...

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30.5

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def _muck_w_date(record): """muck with the date because EPW starts counting from 1 and goes to 24.""" # minute 60 is actually minute 0? temp_d = datetime.datetime(int(record['Year']), int(record['Month']), int(record['Day']), int(record['Hour']) % 24, ...

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def _unpack_body(self): """Unpack `body` replace it by the result.""" obj = self._get_body_instance() obj.unpack(self.body.value) self.body = obj

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34.6

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def console_print_rect_ex( con: tcod.console.Console, x: int, y: int, w: int, h: int, flag: int, alignment: int, fmt: str, ) -> int: """Print a string constrained to a rectangle with blend and alignment. Returns: int: The number of lines of text once word-wrapped. ....

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22.173913

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def setupTable_VORG(self): """ Make the VORG table. **This should not be called externally.** Subclasses may override or supplement this method to handle the table creation in a different way if desired. """ if "VORG" not in self.tables: return ...

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39.208333

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def validate_rmq_cluster_running_nodes(self, sentry_units): """Check that all rmq unit hostnames are represented in the cluster_status output of all units. :param host_names: dict of juju unit names to host names :param units: list of sentry unit pointers (all rmq units) :return...

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47.482759

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def teardown(self): ''' cleanup the monitor data and ''' self.monitor_thread.stop() self.monitor_thread = None super(BaseMonitor, self).teardown()

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26.857143

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def main(): """Entrypoint for ``lander`` executable.""" args = parse_args() config_logger(args) logger = structlog.get_logger(__name__) if args.show_version: # only print the version print_version() sys.exit(0) version = pkg_resources.get_distribution('lander').version ...

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25.533333

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def link_marked_atoms(self, atoms): """ Take a list of marked "interesting" atoms (heteroatoms, special carbons) and attempt to connect them, returning a list of disjoint groups of special atoms (and their connected hydrogens). :param atoms: set of marked "interesting" atoms, pr...

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def get(url, **kwargs): """ Wrapper for `request.get` function to set params. """ headers = kwargs.get('headers', {}) headers['User-Agent'] = config.USER_AGENT # overwrite kwargs['headers'] = headers timeout = kwargs.get('timeout', config.TIMEOUT) kwargs['timeout'] = timeout kwargs...

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27.666667

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def insert(self, index: int, obj: Any) -> None: """ Inserts an item to the list as long as it is not None """ if obj is not None: super().insert(index, obj)

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45.25

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def perform_initialization(self): '''Initialize the harvesting for a given job''' log.debug('Initializing backend') factory = HarvestJob if self.dryrun else HarvestJob.objects.create self.job = factory(status='initializing', started=datetime.now(), ...

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def simplify(self, options=None): """ returns a dict describing a simple snapshot of this change, and its children if any. """ simple = { "class": type(self).__name__, "is_change": self.is_change(), "description": self.get_description(), ...

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25.423077

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def index_complement(index_list, len_=None): """ Returns the other indicies in a list of length ``len_`` """ mask1 = index_to_boolmask(index_list, len_) mask2 = not_list(mask1) index_list_bar = list_where(mask2) return index_list_bar

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31.75

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def list_connections(self, limit=500, offset=0): """List Points to which this Things is subscribed. I.e. list all the Points this Thing is following and controls it's attached to Returns subscription list e.g. #!python { "<Subscription GUID 1>": { ...

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42.125

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def is_python_script(filename): '''Checks a file to see if it's a python script of some sort. ''' if filename.lower().endswith('.py'): return True if not os.path.isfile(filename): return False try: with open(filename, 'rb') as fp: if fp.read(2) != b'#!': ...

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24.277778

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def calcMzFromMass(mass, charge): """Calculate the mz value of a peptide from its mass and charge. :param mass: float, exact non protonated mass :param charge: int, charge state :returns: mass to charge ratio of the specified charge state """ mz = (mass + (maspy.constants.atomicMassProton * ch...

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34

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def is_extension_type(arr): """ Check whether an array-like is of a pandas extension class instance. Extension classes include categoricals, pandas sparse objects (i.e. classes represented within the pandas library and not ones external to it like scipy sparse matrices), and datetime-like arrays. ...

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25.245614

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def delete_session(sid_s): """Delete entries in the data- and kvsessionstore with the given sid_s. On a successful deletion, the flask-kvsession store returns 1 while the sqlalchemy datastore returns None. :param sid_s: The session ID. :returns: ``1`` if deletion was successful. """ # Remo...

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35.933333

15.4

def get_fieldset_index(fieldsets, index_or_name): """ Return the index of a fieldset in the ``fieldsets`` list. Args: fieldsets (list): The original ``fieldsets`` list. index_or_name (int or str): The value of the reference element, or directly its numeric index. Returns: (int)...

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32.473684

22.473684

def _ProcessImage(self, tag, wall_time, step, image): """Processes an image by adding it to accumulated state.""" event = ImageEvent(wall_time=wall_time, step=step, encoded_image_string=image.encoded_image_string, width=image.width, ...

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47.75

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def _read_para_echo_request_unsigned(self, code, cbit, clen, *, desc, length, version): """Read HIP ECHO_REQUEST_UNSIGNED parameter. Structure of HIP ECHO_REQUEST_UNSIGNED parameter [RFC 7401]: 0 1 2 3 0 1 2 3 4 5 6 7 8 9 0...

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43.666667

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def get_best_electronegativity_anonymous_mapping(self, struct1, struct2): """ Performs an anonymous fitting, which allows distinct species in one structure to map to another. E.g., to compare if the Li2O and Na2O structures are similar. If multiple substitutions are within tolerance ...

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41.451613

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def imbalance_metrics(data): """ Computes imbalance metric for a given dataset. Imbalance metric is equal to 0 when a dataset is perfectly balanced (i.e. number of in each class is exact). :param data : pandas.DataFrame A dataset in a panda's data frame :returns int A value of imbalan...

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46.95

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def address_from_digest(digest): # type: (Digest) -> Address """ Generates an address from a private key digest. """ address_trits = [0] * (Address.LEN * TRITS_PER_TRYTE) # type: List[int] sponge = Kerl() sponge.absorb(digest.as_trits()) sponge.squeeze(a...

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28.647059

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def wait_and_ignore(condition, timeout=WTF_TIMEOUT_MANAGER.NORMAL, sleep=0.5): ''' Waits wrapper that'll wait for the condition to become true, but will not error if the condition isn't met. Args: condition (lambda) - Lambda expression to wait for to evaluate to True. Kwargs: time...

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29.575758

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def random_draw(self, size=None): """Draw random samples of the hyperparameters. Parameters ---------- size : None, int or array-like, optional The number/shape of samples to draw. If None, only one sample is returned. Default is None. """ ...

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42

20.5

def get_output_jsonpath_with_name(self, sub_output=None): """If ExtractorProcessor has a name defined, return a JSONPath that has a filter on that name""" if self.name is None: return None output_jsonpath_field = self.get_output_jsonpath_field(sub_output) extractor_f...

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41.166667

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def parse_argv(self, argv=None, location='Command line.'): """Parse command line arguments. args <list str> or None: The argument list to parse. None means use a copy of sys.argv. argv[0] is ignored. location = '' <str>: A user friendly string describ...

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def orthographic_u_umlaut(sound: str) -> str: """ >>> OldNorsePhonology.orthographic_u_umlaut("a") 'ö' >>> OldNorsePhonology.orthographic_u_umlaut("e") 'e' :param sound: :return: """ if sound in OldNorsePhonology.U_UMLAUT: return OldNo...

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26.714286

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def change_first_point_by_coords(self, x, y, max_distance=1e-4, raise_if_too_far_away=True): """ Set the first point of the exterior to the given point based on its coordinates. If multiple points are found, the closest one will be picked. If no matc...

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37.659574

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def getSelectedTab(tabs, forURL): """ Returns the tab that should be selected when the current resource lives at C{forURL}. Call me after L{setTabURLs} @param tabs: sequence of L{Tab} instances @param forURL: L{nevow.url.URL} @return: L{Tab} instance """ flatTabs = [] def flatte...

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22.257143

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def __calculate_links(self, cluster1, cluster2): """! @brief Returns number of link between two clusters. @details Link between objects (points) exists only if distance between them less than connectivity radius. @param[in] cluster1 (list): The first cluster. @par...

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35.736842

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def partition_dict(items, key): """ Given an ordered dictionary of items and a key in that dict, return an ordered dict of items before, the keyed item, and an ordered dict of items after. >>> od = collections.OrderedDict(zip(range(5), 'abcde')) >>> before, item, after = partition_dict(od, 3) >>> before Ordere...

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27.028571

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def _convert_nest_to_flat(self, params, _result=None, _prefix=None): """ Convert a data structure that looks like:: {"foo": {"bar": "baz", "shimmy": "sham"}} to:: {"foo.bar": "baz", "foo.shimmy": "sham"} This is the inverse of L{_convert_flat_to_n...

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28.4

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def set_value(self, treeiter, column, value): """ {{ all }} `value` can also be a Python value and will be converted to a :obj:`GObject.Value` using the corresponding column type (See :obj:`Gtk.ListStore.set_column_types`\\()). """ value = self._convert_value(co...

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35

19

def new_cells_from_excel( self, book, range_, sheet=None, names_row=None, param_cols=None, param_order=None, transpose=False, names_col=None, param_rows=None, ): """Create multiple cells from an Excel range. This method...

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43.520408

21.540816

def get_targets(conn=None): """ get_brain_targets function from Brain.Targets table. :return: <generator> yields dict objects """ targets = RBT results = targets.run(conn) for item in results: yield item

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23.1

14.3

def create_project_connection(self, create_connection_inputs, project): """CreateProjectConnection. [Preview API] Creates a new Pipeline connection between the provider installation and the specified project. Returns the PipelineConnection object created. :param :class:`<CreatePipelineConnection...

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def main(): """The main function. These are the steps performed for the data clean up: 1. Prints the version number. 2. Reads the configuration file (:py:func:`read_config_file`). 3. Creates a new directory with ``data_clean_up`` as prefix and the date and time as suffix. 4. Check the i...

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36.80203

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def calc_n_coarse_chan(self, chan_bw=None): """ This makes an attempt to calculate the number of coarse channels in a given file. Note: This is unlikely to work on non-Breakthrough Listen data, as a-priori knowledge of the digitizer system is required. """ ...

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def do_alarm_definition_patch(mc, args): '''Patch the alarm definition.''' fields = {} fields['alarm_id'] = args.id if args.name: fields['name'] = args.name if args.description: fields['description'] = args.description if args.expression: fields['expression'] = args.expre...

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def _pid_to_id(self, pid): """Converts a pid to a URI that can be used as an OAI-ORE identifier.""" return d1_common.url.joinPathElements( self._base_url, self._version_tag, "resolve", d1_common.url.encodePathElement(pid), )

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36.125

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async def import_aggregated(self, async_client, pid): """Import the SciObj at {pid}. If the SciObj is a Resource Map, also recursively import the aggregated objects. """ self._logger.info('Importing: {}'.format(pid)) task_set = set() object_info_pyxb = d1_common.types...

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34.294118

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def generate_pseudo(strain_states, order=3): """ Generates the pseudoinverse for a given set of strains. Args: strain_states (6xN array like): a list of voigt-notation "strain-states", i. e. perturbed indices of the strain as a function of the smallest strain e. g. (0, 1, 0,...

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39.512821

14.538462

def _pirls(self, X, Y, weights): """ Performs stable PIRLS iterations to estimate GAM coefficients Parameters --------- X : array-like of shape (n_samples, m_features) containing input data Y : array-like of shape (n,) containing target data ...

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34.831776

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def create_key_ring( self, parent, key_ring_id, key_ring, retry=google.api_core.gapic_v1.method.DEFAULT, timeout=google.api_core.gapic_v1.method.DEFAULT, metadata=None, ): """ Create a new ``KeyRing`` in a given Project and Location. E...

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41.105882

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def _extract_functions(resources): """ Extracts and returns function information from the given dictionary of SAM/CloudFormation resources. This method supports functions defined with AWS::Serverless::Function and AWS::Lambda::Function :param dict resources: Dictionary of SAM/CloudForma...

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48.964286

37.178571

def check_overlap(current, hit, overlap = 200): """ determine if sequence has already hit the same part of the model, indicating that this hit is for another 16S rRNA gene """ for prev in current: p_coords = prev[2:4] coords = hit[2:4] if get_overlap(coords, p_coords) >= over...

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32.272727

13.545455

def _get_repo_file(self, repo_path): """ Lazy load RepoFile objects on demand. :param repo_path: :return: """ if repo_path not in self._repo_files: self._repo_files[repo_path] = RepoFile(repo_path) return self._repo_files[repo_path]

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32.444444

8.444444

def write_languages(f, l): """Write language information.""" f.write("Languages = {%s" % os.linesep) for lang in sorted(l): f.write(" %r: %r,%s" % (lang, l[lang], os.linesep)) f.write("}%s" % os.linesep)

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37.5

10.333333

def get_icohp_dict_of_site(self, site, minsummedicohp=None, maxsummedicohp=None, minbondlength=0.0, maxbondlength=8.0, only_bonds_to=None): """ get a dict of IcohpValue for a certain site (indicated by integer) Args: site: integer describing the site of...

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57.304348

29.608696

def RSA_encrypt(public_key, message): '''用RSA加密字符串. public_key - 公钥 message - 要加密的信息, 使用UTF-8编码的字符串 @return - 使用base64编码的字符串 ''' # 如果没能成功导入RSA模块, 就直接返回空白字符串. if not globals().get('RSA'): return '' rsakey = RSA.importKey(public_key) rsakey = PKCS1_v1_5.new(rsakey) e...

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29.928571

15.214286

def admin_tools_render_dashboard(context, location='index', dashboard=None): """ Template tag that renders the dashboard, it takes two optional arguments: ``location`` The location of the dashboard, it can be 'index' (for the admin index dashboard) or 'app_index' (for the app index dashboar...

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34.42

20.1

def _write_to_error(self, s, truncate=False): """Writes the given output to the error file, appending unless `truncate` is True.""" # if truncate is True, set write mode to truncate with open(self._errorfile, 'w' if truncate else 'a') as fp: fp.writelines((to_text(s)), )

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60.6

10

def working_yesterday(self, date_from=None, date_format=None): """ Retourne la date d'hier depuis maintenant ou depuis une date fournie seulement sur les jours ouvrableq. Ainsi lundi devient samedi et samedi devient vendredi :param: :date_from date de référence :return datetime """ # date d'hier que su...

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39.909091

18.636364

def from_ros_pose_msg(pose_msg, from_frame='unassigned', to_frame='world'): """Creates a RigidTransform from a ROS pose msg. Parameters ---------- pose_msg : :obj:`geometry_msgs.msg.Pose` ROS pose message "...

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40.818182

12.090909

def get_rtr_name(self, router_id): """Retrieve the router name. Incomplete. """ try: body = {} router = self.neutronclient.show_router(router_id, body=body) return router.get('router').get('name') except Exception as exc: LOG.error("Failed to show ...

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45.555556

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def isLoopback (self, ifname): """Check whether interface is a loopback device. @param ifname: interface name @type ifname: string """ # since not all systems have IFF_LOOPBACK as a flag defined, # the ifname is tested first if ifname.startswith('lo'): ...

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38.7

10.2

def inject(self, request, response): """ Inject the debug toolbar iframe into an HTML response. """ # called in host app if not isinstance(response, Response): return settings = request.app[APP_KEY]['settings'] response_html = response.body rou...

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39.1

15.233333

def parse_oxide(self): """ Determines if an oxide is a peroxide/superoxide/ozonide/normal oxide. Returns: oxide_type (str): Type of oxide ozonide/peroxide/superoxide/hydroxide/None. nbonds (int): Number of peroxide/superoxide/hydroxide bonds in st...

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39

15.873239

def get_extensions_assigned_to_user(self, user_id): """GetExtensionsAssignedToUser. [Preview API] Returns extensions that are currently assigned to the user in the account :param str user_id: The user's identity id. :rtype: {LicensingSource} """ route_values = {} ...

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53.285714

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def get_unverified_claims(token): """Returns the decoded claims without verification of any kind. Args: token (str): A signed JWT to decode the headers from. Returns: dict: The dict representation of the token claims. Raises: JWTError: If there is an exception decoding the tok...

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27.269231

23.269231

def _chooseBestSegmentPerCell(cls, connections, cells, allMatchingSegments, potentialOverlaps): """ For each specified cell, choose its matching segment with largest number of acti...

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38.285714

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def render_template(template_name_or_list, **context): """Renders a template from the template folder with the given context. :param template_name_or_list: the name of the template to be rendered, or an iterable with template names the fir...

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46.642857

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def set_title(self,table=None,title=None,verbose=None): """ Changes the visible identifier of a single table. :param table (string, optional): Specifies a table by table name. If the pr efix SUID: is used, the table corresponding the SUID will be returne d. :para...

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45.230769

25.692308