kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def main(): """Read configuration and execute test runs.""" parser = argparse.ArgumentParser(description='Stress test applications.') parser.add_argument('config_path', help='Path to configuration file.') args = parser.parse_args() try: configuration = load_configuration(args.config_path) ...	[ "def", "main", "(", ")", ":", "parser", "=", "argparse", ".", "ArgumentParser", "(", "description", "=", "'Stress test applications.'", ")", "parser", ".", "add_argument", "(", "'config_path'", ",", "help", "=", "'Path to configuration file.'", ")", "args", "=", ...	41.65	19.7
def pop(self, key, default=__marker): '''od.pop(k[,d]) -> v, remove specified key and return the corresponding value. If key is not found, d is returned if given, otherwise KeyError is raised. ''' if key in self: result = self[key] del self[key] retur...	[ "def", "pop", "(", "self", ",", "key", ",", "default", "=", "__marker", ")", ":", "if", "key", "in", "self", ":", "result", "=", "self", "[", "key", "]", "del", "self", "[", "key", "]", "return", "result", "if", "default", "is", "self", ".", "__m...	34.083333	20.75
def read_namespaced_deployment_scale(self, name, namespace, **kwargs): """ read scale of the specified Deployment This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True >>> thread = api.read_namespaced_deployment_...	[ "def", "read_namespaced_deployment_scale", "(", "self", ",", "name", ",", "namespace", ",", "", "", "kwargs", ")", ":", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'async_req'", ")", ":", "return", "self",...	49.545455	23.363636
def _potential_wins(self): '''Generates all the combinations of board positions that need to be checked for a win.''' yield from self.board yield from zip(*self.board) yield self.board[0][0], self.board[1][1], self.board[2][2] yield self.board[0][2], self.board[1][1], sel...	[ "def", "_potential_wins", "(", "self", ")", ":", "yield", "from", "self", ".", "board", "yield", "from", "zip", "(", "*", "self", ".", "board", ")", "yield", "self", ".", "board", "[", "0", "]", "[", "0", "]", ",", "self", ".", "board", "[", "1",...	46.714286	16.714286
def clear_cache(self, items=None, topic=EVENT_TOPIC): """ expects event object to be in the format of a session-stop or session-expire event, whose results attribute is a namedtuple(identifiers, session_key) """ try: for realm in self.realms: i...	[ "def", "clear_cache", "(", "self", ",", "items", "=", "None", ",", "topic", "=", "EVENT_TOPIC", ")", ":", "try", ":", "for", "realm", "in", "self", ".", "realms", ":", "identifier", "=", "items", ".", "identifiers", ".", "from_source", "(", "realm", "....	41.866667	14.133333
def set_attribute(self, attribute, attribute_state): """Get an attribute from the session. :param attribute: :return: attribute value, status code :rtype: object, constants.StatusCode """ # Check that the attribute exists. try: attr = attributes.Attr...	[ "def", "set_attribute", "(", "self", ",", "attribute", ",", "attribute_state", ")", ":", "# Check that the attribute exists.", "try", ":", "attr", "=", "attributes", ".", "AttributesByID", "[", "attribute", "]", "except", "KeyError", ":", "return", "constants", "....	34	20.214286
def import_module_from_fpath(module_fpath): r""" imports module from a file path Args: module_fpath (str): Returns: module: module CommandLine: python -m utool.util_import --test-import_module_from_fpath Example: >>> # DISABLE_DOCTEST >>> from utool.util_i...	[ "def", "import_module_from_fpath", "(", "module_fpath", ")", ":", "from", "os", ".", "path", "import", "basename", ",", "splitext", ",", "isdir", ",", "join", ",", "exists", ",", "dirname", ",", "split", "import", "platform", "if", "isdir", "(", "module_fpat...	35.191489	21.524823
def get_affiliation_details(self, value, affiliation_id, institute_literal): """ This method is used to map the Affiliation between an author and Institution. Parameters ---------- value - The author name affiliation_id - Primary key of the affiliation table inst...	[ "def", "get_affiliation_details", "(", "self", ",", "value", ",", "affiliation_id", ",", "institute_literal", ")", ":", "tokens", "=", "tuple", "(", "[", "t", ".", "upper", "(", ")", ".", "strip", "(", ")", "for", "t", "in", "value", ".", "split", "(",...	32	19.025641
def __random_density_bures(N, rank=None, seed=None): """ Generate a random density matrix from the Bures metric. Args: N (int): the length of the density matrix. rank (int or None): the rank of the density matrix. The default value is full-rank. seed (int): Optional. To ...	[ "def", "__random_density_bures", "(", "N", ",", "rank", "=", "None", ",", "seed", "=", "None", ")", ":", "P", "=", "np", ".", "eye", "(", "N", ")", "+", "random_unitary", "(", "N", ")", ".", "data", "G", "=", "P", ".", "dot", "(", "__ginibre_matr...	33.25	14.5
def _computeforce(self,R,z,phi=0,t=0): """ NAME: _computeforce PURPOSE: Evaluate the first derivative of Phi with respect to R, z and phi INPUT: R - Cylindrical Galactocentric radius z - vertical height phi - azimuth t - t...	[ "def", "_computeforce", "(", "self", ",", "R", ",", "z", ",", "phi", "=", "0", ",", "t", "=", "0", ")", ":", "Acos", ",", "Asin", "=", "self", ".", "_Acos", ",", "self", ".", "_Asin", "N", ",", "L", ",", "M", "=", "Acos", ".", "shape", "r",...	38.244444	15.844444
def bna_config_cmd_status_input_session_id(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") bna_config_cmd_status = ET.Element("bna_config_cmd_status") config = bna_config_cmd_status input = ET.SubElement(bna_config_cmd_status, "input") se...	[ "def", "bna_config_cmd_status_input_session_id", "(", "self", ",", "", "", "kwargs", ")", ":", "config", "=", "ET", ".", "Element", "(", "\"config\"", ")", "bna_config_cmd_status", "=", "ET", ".", "Element", "(", "\"bna_config_cmd_status\"", ")", "config", "="...	41.333333	13.583333
def add_to_subset(self, id, s): """ Adds a node to a subset """ n = self.node(id) if 'meta' not in n: n['meta'] = {} meta = n['meta'] if 'subsets' not in meta: meta['subsets'] = [] meta['subsets'].append(s)	[ "def", "add_to_subset", "(", "self", ",", "id", ",", "s", ")", ":", "n", "=", "self", ".", "node", "(", "id", ")", "if", "'meta'", "not", "in", "n", ":", "n", "[", "'meta'", "]", "=", "{", "}", "meta", "=", "n", "[", "'meta'", "]", "if", "'...	25.818182	8.909091
def verify(self, authenticators): """Verify this OMAPI message. >>> a1 = OmapiHMACMD5Authenticator(b"egg", b"spam") >>> a2 = OmapiHMACMD5Authenticator(b"egg", b"tomatoes") >>> a1.authid = a2.authid = 5 >>> m = OmapiMessage.open(b"host") >>> m.verify({a1.authid: a1}) False >>> m.sign(a1) >>> m.verify(...	[ "def", "verify", "(", "self", ",", "authenticators", ")", ":", "try", ":", "return", "authenticators", "[", "self", ".", "authid", "]", ".", "sign", "(", "self", ".", "as_string", "(", "forsigning", "=", "True", ")", ")", "==", "self", ".", "signature"...	25.695652	20.826087
def verify(self, connection_type=None): """ Verifies and update the remote system settings. :param connection_type: same as the one in `create` method. """ req_body = self._cli.make_body(connectionType=connection_type) resp = self.action('verify', **req_body) re...	[ "def", "verify", "(", "self", ",", "connection_type", "=", "None", ")", ":", "req_body", "=", "self", ".", "_cli", ".", "make_body", "(", "connectionType", "=", "connection_type", ")", "resp", "=", "self", ".", "action", "(", "'verify'", ",", "", "", ...	31.545455	17.727273
def tie_weights(self): """ Run this to be sure output and input (adaptive) softmax weights are tied """ # sampled softmax if self.sample_softmax > 0: if self.config.tie_weight: self.out_layer.weight = self.transformer.word_emb.weight # adaptive softmax (includ...	[ "def", "tie_weights", "(", "self", ")", ":", "# sampled softmax", "if", "self", ".", "sample_softmax", ">", "0", ":", "if", "self", ".", "config", ".", "tie_weight", ":", "self", ".", "out_layer", ".", "weight", "=", "self", ".", "transformer", ".", "wor...	58.411765	24.058824
def getaddresses(fieldvalues): """Return a list of (REALNAME, EMAIL) for each fieldvalue.""" all = COMMASPACE.join(fieldvalues) a = _AddressList(all) return a.addresslist	[ "def", "getaddresses", "(", "fieldvalues", ")", ":", "all", "=", "COMMASPACE", ".", "join", "(", "fieldvalues", ")", "a", "=", "_AddressList", "(", "all", ")", "return", "a", ".", "addresslist" ]	36.4	8.6
def authenticate(self, req, resp, resource): """ Extract basic auth token from request `authorization` header, deocode the token, verifies the username/password and return either a ``user`` object if successful else raise an `falcon.HTTPUnauthoried exception` """ usernam...	[ "def", "authenticate", "(", "self", ",", "req", ",", "resp", ",", "resource", ")", ":", "username", ",", "password", "=", "self", ".", "_extract_credentials", "(", "req", ")", "user", "=", "self", ".", "user_loader", "(", "username", ",", "password", ")"...	42	18.923077
def resolve_parameters(value, parameters, date_time=datetime.datetime.now(), macros=False): """ Resolve a format modifier with the corresponding value. Args: value: The string (path, table, or any other artifact in a cell_body) which may have format modifiers. E.g. a table name could be <projec...	[ "def", "resolve_parameters", "(", "value", ",", "parameters", ",", "date_time", "=", "datetime", ".", "datetime", ".", "now", "(", ")", ",", "macros", "=", "False", ")", ":", "merged_parameters", "=", "Query", ".", "merge_parameters", "(", "parameters", ",",...	63.904762	39.238095
def scale_dataset(self, dsid, variable, info): """Scale the data set, applying the attributes from the netCDF file""" variable = remove_empties(variable) scale = variable.attrs.get('scale_factor', np.array(1)) offset = variable.attrs.get('add_offset', np.array(0)) if np.issubdty...	[ "def", "scale_dataset", "(", "self", ",", "dsid", ",", "variable", ",", "info", ")", ":", "variable", "=", "remove_empties", "(", "variable", ")", "scale", "=", "variable", ".", "attrs", ".", "get", "(", "'scale_factor'", ",", "np", ".", "array", "(", ...	49.288136	23.220339
def _append_hdu_info(self, ext): """ internal routine append info for indiciated extension """ # raised IOError if not found hdu_type = self._FITS.movabs_hdu(ext+1) if hdu_type == IMAGE_HDU: hdu = ImageHDU(self._FITS, ext, **self.keys) elif ...	[ "def", "_append_hdu_info", "(", "self", ",", "ext", ")", ":", "# raised IOError if not found", "hdu_type", "=", "self", ".", "_FITS", ".", "movabs_hdu", "(", "ext", "+", "1", ")", "if", "hdu_type", "==", "IMAGE_HDU", ":", "hdu", "=", "ImageHDU", "(", "self...	32.052632	13.947368
def get_dimension_type(self, dim): """Get the type of the requested dimension. Type is determined by Dimension.type attribute or common type of the dimension values, otherwise None. Args: dimension: Dimension to look up by name or by index Returns: Decl...	[ "def", "get_dimension_type", "(", "self", ",", "dim", ")", ":", "dim", "=", "self", ".", "get_dimension", "(", "dim", ")", "if", "dim", "is", "None", ":", "return", "None", "elif", "dim", ".", "type", "is", "not", "None", ":", "return", "dim", ".", ...	30.95	17.15
def where(self, column_or_label, value_or_predicate=None, other=None): """ Return a new ``Table`` containing rows where ``value_or_predicate`` returns True for values in ``column_or_label``. Args: ``column_or_label``: A column of the ``Table`` either as a label (...	[ "def", "where", "(", "self", ",", "column_or_label", ",", "value_or_predicate", "=", "None", ",", "other", "=", "None", ")", ":", "column", "=", "self", ".", "_get_column", "(", "column_or_label", ")", "if", "other", "is", "not", "None", ":", "assert", "...	42.789474	20.894737
def equal_to_be(self, be_record): # type: (PathTableRecord) -> bool ''' A method to compare a little-endian path table record to its big-endian counterpart. This is used to ensure that the ISO is sane. Parameters: be_record - The big-endian object to compare with the l...	[ "def", "equal_to_be", "(", "self", ",", "be_record", ")", ":", "# type: (PathTableRecord) -> bool", "if", "not", "self", ".", "_initialized", ":", "raise", "pycdlibexception", ".", "PyCdlibInternalError", "(", "'This Path Table Record is not yet initialized'", ")", "if", ...	43.956522	26.652174
def upload_video(self, media, media_type, media_category=None, size=None, check_progress=False): """Uploads video file to Twitter servers in chunks. The file will be available to be attached to a status for 60 minutes. To attach to a update, pass a list of returned media ids to the :meth:`update...	[ "def", "upload_video", "(", "self", ",", "media", ",", "media_type", ",", "media_category", "=", "None", ",", "size", "=", "None", ",", "check_progress", "=", "False", ")", ":", "upload_url", "=", "'https://upload.twitter.com/1.1/media/upload.json'", "if", "not", ...	37.965909	23.306818
def centerdc_2_twosided(data): """Convert a center-dc PSD to a twosided PSD""" N = len(data) newpsd = np.concatenate((data[N//2:], (cshift(data[0:N//2], -1)))) return newpsd	[ "def", "centerdc_2_twosided", "(", "data", ")", ":", "N", "=", "len", "(", "data", ")", "newpsd", "=", "np", ".", "concatenate", "(", "(", "data", "[", "N", "//", "2", ":", "]", ",", "(", "cshift", "(", "data", "[", "0", ":", "N", "//", "2", ...	37	17.2
def measurements_to_bf(measurements: np.ndarray) -> float: """ Convert measurements into gradient binary fraction. :param measurements: Output measurements of gradient program. :return: Binary fraction representation of gradient estimate. """ try: measurements.sum(axis=0) except Att...	[ "def", "measurements_to_bf", "(", "measurements", ":", "np", ".", "ndarray", ")", "->", "float", ":", "try", ":", "measurements", ".", "sum", "(", "axis", "=", "0", ")", "except", "AttributeError", ":", "measurements", "=", "np", ".", "asarray", "(", "me...	30.473684	20.157895
def save(self, filename, clobber=True, **kwargs): """ Save the `Spectrum1D` object to the specified filename. :param filename: The filename to save the Spectrum1D object to. :type filename: str :param clobber: [optional] Whether to o...	[ "def", "save", "(", "self", ",", "filename", ",", "clobber", "=", "True", ",", "", "", "kwargs", ")", ":", "if", "os", ".", "path", ".", "exists", "(", "filename", ")", "and", "not", "clobber", ":", "raise", "IOError", "(", "\"filename '{0}' exists a...	35.982456	20.684211
def getclusters(self, count): """ Generates count clusters. :param count: The amount of clusters that should be generated. count must be greater than ``1``. :raises ClusteringError: if count is out of bounds. """ # only proceed if we got sensible input ...	[ "def", "getclusters", "(", "self", ",", "count", ")", ":", "# only proceed if we got sensible input", "if", "count", "<=", "1", ":", "raise", "ClusteringError", "(", "\"When clustering, you need to ask for at \"", "\"least two clusters! \"", "\"You asked for %d\"", "%", "co...	39.95122	18.926829
def warning(lineno, msg): """ Generic warning error routine """ msg = "%s:%i: warning: %s" % (global_.FILENAME, lineno, msg) msg_output(msg) global_.has_warnings += 1	[ "def", "warning", "(", "lineno", ",", "msg", ")", ":", "msg", "=", "\"%s:%i: warning: %s\"", "%", "(", "global_", ".", "FILENAME", ",", "lineno", ",", "msg", ")", "msg_output", "(", "msg", ")", "global_", ".", "has_warnings", "+=", "1" ]	30.166667	11.833333
def flatten(x): """flatten(sequence) -> list Returns a single, flat list which contains all elements retrieved from the sequence and all recursively contained sub-sequences (iterables). Examples: >>> [1, 2, [3,4], (5,6)] [1, 2, [3, 4], (5, 6)] >>> flatten([[[1,2,3], (42,None)], [4,5], ...	[ "def", "flatten", "(", "x", ")", ":", "for", "el", "in", "x", ":", "if", "hasattr", "(", "el", ",", "\"__iter__\"", ")", "and", "not", "isinstance", "(", "el", ",", "(", "binary", ",", "unicode", ")", ")", ":", "for", "els", "in", "flatten", "(",...	28.7	22.05
def ratio(value, decimal_places=0, failure_string='N/A'): """ Converts a floating point value a X:1 ratio. Number of decimal places set by the `precision` kwarg. Default is one. """ try: f = float(value) except ValueError: return failure_string return _saferound(f, decim...	[ "def", "ratio", "(", "value", ",", "decimal_places", "=", "0", ",", "failure_string", "=", "'N/A'", ")", ":", "try", ":", "f", "=", "float", "(", "value", ")", "except", "ValueError", ":", "return", "failure_string", "return", "_saferound", "(", "f", ","...	29.727273	16.272727
def _generateFirstOrder0(): """ Generate the initial, first order, and second order transition probabilities for 'probability0'. For this model, we generate the following set of sequences: .1 .75 0----1-----2 \ \ \ \ .25 \ \-----3 \ \ .9 .5 \--- 4-----...	[ "def", "_generateFirstOrder0", "(", ")", ":", "# --------------------------------------------------------------------", "# Initial probabilities, 'a' and 'e' equally likely", "numCategories", "=", "5", "initProb", "=", "numpy", ".", "zeros", "(", "numCategories", ")", "initProb",...	37.876543	22.209877
def main(): """Simply merge all trajectories in the working directory""" folder = os.getcwd() print('Merging all files') merge_all_in_folder(folder, delete_other_files=True, # We will only keep one trajectory dynamic_imports=FunctionParameter, ...	[ "def", "main", "(", ")", ":", "folder", "=", "os", ".", "getcwd", "(", ")", "print", "(", "'Merging all files'", ")", "merge_all_in_folder", "(", "folder", ",", "delete_other_files", "=", "True", ",", "# We will only keep one trajectory", "dynamic_imports", "=", ...	39.555556	16.888889
def _citation_sort_key(t: EdgeTuple) -> str: """Make a confusing 4 tuple sortable by citation.""" return '"{}", "{}"'.format(t[3][CITATION][CITATION_TYPE], t[3][CITATION][CITATION_REFERENCE])	[ "def", "_citation_sort_key", "(", "t", ":", "EdgeTuple", ")", "->", "str", ":", "return", "'\"{}\", \"{}\"'", ".", "format", "(", "t", "[", "3", "]", "[", "CITATION", "]", "[", "CITATION_TYPE", "]", ",", "t", "[", "3", "]", "[", "CITATION", "]", "[",...	65.666667	20.333333
def get_tau_at_quantile(mean, stddev, quantile): """ Returns the value of tau at a given quantile in the form of a dictionary organised by intensity measure """ tau_model = {} for imt in mean: tau_model[imt] = {} for key in mean[imt]: if quantile is None: ...	[ "def", "get_tau_at_quantile", "(", "mean", ",", "stddev", ",", "quantile", ")", ":", "tau_model", "=", "{", "}", "for", "imt", "in", "mean", ":", "tau_model", "[", "imt", "]", "=", "{", "}", "for", "key", "in", "mean", "[", "imt", "]", ":", "if", ...	36.6875	16.1875
def split(x, split_dim, num_or_size_splits, name=None): """Like tf.split. Args: x: a Tensor split_dim: a Dimension in x.shape.dims num_or_size_splits: either an integer dividing split_dim.size or a list of integers adding up to split_dim.size name: an optional string Returns: a list of...	[ "def", "split", "(", "x", ",", "split_dim", ",", "num_or_size_splits", ",", "name", "=", "None", ")", ":", "return", "SplitOperation", "(", "x", ",", "split_dim", ",", "num_or_size_splits", ",", "name", "=", "name", ")", ".", "outputs" ]	30.769231	19.384615
def p_mp_createClass(p): """mp_createClass : classDeclaration """ # pylint: disable=too-many-branches,too-many-statements,too-many-locals ns = p.parser.handle.default_namespace cc = p[1] try: fixedNS = fixedRefs = fixedSuper = False while not fixedNS or not fix...	[ "def", "p_mp_createClass", "(", "p", ")", ":", "# pylint: disable=too-many-branches,too-many-statements,too-many-locals", "ns", "=", "p", ".", "parser", ".", "handle", ".", "default_namespace", "cc", "=", "p", "[", "1", "]", "try", ":", "fixedNS", "=", "fixedRefs"...	46.4	17.208
def check_distance_funciton_input(distance_func_name, netinfo): """ Funciton checks distance_func_name, if it is specified as 'default'. Then given the type of the network selects a default distance function. Parameters ---------- distance_func_name : str distance function name. netin...	[ "def", "check_distance_funciton_input", "(", "distance_func_name", ",", "netinfo", ")", ":", "if", "distance_func_name", "==", "'default'", "and", "netinfo", "[", "'nettype'", "]", "[", "0", "]", "==", "'b'", ":", "print", "(", "'Default distance funciton specified....	30.3	25.366667
def _find_any(self, task_spec): """ Returns any descendants that have the given task spec assigned. :type task_spec: TaskSpec :param task_spec: The wanted task spec. :rtype: list(Task) :returns: The tasks objects that are attached to the given task spec. """ ...	[ "def", "_find_any", "(", "self", ",", "task_spec", ")", ":", "tasks", "=", "[", "]", "if", "self", ".", "task_spec", "==", "task_spec", ":", "tasks", ".", "append", "(", "self", ")", "for", "child", "in", "self", ":", "if", "child", ".", "task_spec",...	31.823529	14.058824
def generate_map(map, name='url_map'): """ Generates a JavaScript function containing the rules defined in this map, to be used with a MapAdapter's generate_javascript method. If you don't pass a name the returned JavaScript code is an expression that returns a function. Otherwise it's a standalon...	[ "def", "generate_map", "(", "map", ",", "name", "=", "'url_map'", ")", ":", "from", "warnings", "import", "warn", "warn", "(", "DeprecationWarning", "(", "'This module is deprecated'", ")", ")", "map", ".", "update", "(", ")", "rules", "=", "[", "]", "conv...	38.955556	15.622222
def get_section_by_sis_id(self, sis_section_id, params={}): """ Return section resource for given sis id. """ return self.get_section( self._sis_id(sis_section_id, sis_field="section"), params)	[ "def", "get_section_by_sis_id", "(", "self", ",", "sis_section_id", ",", "params", "=", "{", "}", ")", ":", "return", "self", ".", "get_section", "(", "self", ".", "_sis_id", "(", "sis_section_id", ",", "sis_field", "=", "\"section\"", ")", ",", "params", ...	38.666667	11
def _summary_sim(sim, pars, probs): """Summarize chains together and separately REF: rstan/rstan/R/misc.R Parameters are unraveled in column-major order. Parameters ---------- sim : dict dict from from a stanfit fit object, i.e., fit['sim'] pars : Iterable of str paramet...	[ "def", "_summary_sim", "(", "sim", ",", "pars", ",", "probs", ")", ":", "# NOTE: this follows RStan rather closely. Some of the calculations here", "probs_len", "=", "len", "(", "probs", ")", "n_chains", "=", "len", "(", "sim", "[", "'samples'", "]", ")", "# tidx ...	42.635135	21.013514
def get_series_first_release(self, series_id): """ Get first-release data for a Fred series id. This ignores any revision to the data series. For instance, The US GDP for Q1 2014 was first released to be 17149.6, and then later revised to 17101.3, and 17016.0. This will ignore revisions ...	[ "def", "get_series_first_release", "(", "self", ",", "series_id", ")", ":", "df", "=", "self", ".", "get_series_all_releases", "(", "series_id", ")", "first_release", "=", "df", ".", "groupby", "(", "'date'", ")", ".", "head", "(", "1", ")", "data", "=", ...	39.2	25.2
def auth_tls(self, mount_point='cert', use_token=True): """POST /auth/<mount point>/login :param mount_point: :type mount_point: :param use_token: :type use_token: :return: :rtype: """ return self.login('/v1/auth/{0}/login'.format(mount_point), us...	[ "def", "auth_tls", "(", "self", ",", "mount_point", "=", "'cert'", ",", "use_token", "=", "True", ")", ":", "return", "self", ".", "login", "(", "'/v1/auth/{0}/login'", ".", "format", "(", "mount_point", ")", ",", "use_token", "=", "use_token", ")" ]	29.818182	19.090909
def function_exists(FunctionName, region=None, key=None, keyid=None, profile=None): ''' Given a function name, check to see if the given function name exists. Returns True if the given function exists and returns False if the given function does not exist. CLI Example: .. ...	[ "def", "function_exists", "(", "FunctionName", ",", "region", "=", "None", ",", "key", "=", "None", ",", "keyid", "=", "None", ",", "profile", "=", "None", ")", ":", "try", ":", "func", "=", "_find_function", "(", "FunctionName", ",", "region", "=", "r...	29.545455	26.363636
def three_cornered_hat_phase(phasedata_ab, phasedata_bc, phasedata_ca, rate, taus, function): """ Three Cornered Hat Method Given three clocks A, B, C, we seek to find their variances :math:`\\sigma^2_A`, :math:`\\sigma^2_B`, :math:`\\sigma^2_C`. We measure three phase ...	[ "def", "three_cornered_hat_phase", "(", "phasedata_ab", ",", "phasedata_bc", ",", "phasedata_ca", ",", "rate", ",", "taus", ",", "function", ")", ":", "(", "tau_ab", ",", "dev_ab", ",", "err_ab", ",", "ns_ab", ")", "=", "function", "(", "phasedata_ab", ",", ...	33.289474	22.236842
def get_aspect(self, xspan, yspan): """ Computes the aspect ratio of the plot """ if self.data_aspect: return (yspan/xspan)*self.data_aspect elif self.aspect == 'equal': return xspan/yspan elif self.aspect == 'square': return 1 ...	[ "def", "get_aspect", "(", "self", ",", "xspan", ",", "yspan", ")", ":", "if", "self", ".", "data_aspect", ":", "return", "(", "yspan", "/", "xspan", ")", "*", "self", ".", "data_aspect", "elif", "self", ".", "aspect", "==", "'equal'", ":", "return", ...	31.6875	9.5625
def formfield(self, args, *kwargs): """ Returns proper formfield, according to empty_values setting (only for ``forms.CharField`` subclasses). There are 3 different formfields: - CharField that stores all empty values as empty strings; - NullCharField that stores all e...	[ "def", "formfield", "(", "self", ",", "", "args", ",", "", "", "kwargs", ")", ":", "formfield", "=", "super", "(", "TranslationField", ",", "self", ")", ".", "formfield", "(", "", "args", ",", "", "", "kwargs", ")", "if", "isinstance", "(", "...	53.375	25.775
def get_schema_input_format(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") get_schema = ET.Element("get_schema") config = get_schema input = ET.SubElement(get_schema, "input") format = ET.SubElement(input, "format") format.text =...	[ "def", "get_schema_input_format", "(", "self", ",", "", "", "kwargs", ")", ":", "config", "=", "ET", ".", "Element", "(", "\"config\"", ")", "get_schema", "=", "ET", ".", "Element", "(", "\"get_schema\"", ")", "config", "=", "get_schema", "input", "=", ...	35.083333	9.166667
def makeCertHokTokenLoginMethod(stsUrl, stsCert=None): '''Return a function that will call the vim.SessionManager.LoginByToken() after obtaining a HoK SAML token from the STS. The result of this function can be passed as the "loginMethod" to a SessionOrientedStub constructor. @param stsUrl: URL...	[ "def", "makeCertHokTokenLoginMethod", "(", "stsUrl", ",", "stsCert", "=", "None", ")", ":", "assert", "(", "stsUrl", ")", "def", "_doLogin", "(", "soapStub", ")", ":", "from", ".", "import", "sso", "cert", "=", "soapStub", ".", "schemeArgs", "[", "'cert_fi...	38.617647	23.382353
def drop_retention_policy(self, name, database=None): """Drop an existing retention policy for a database. :param name: the name of the retention policy to drop :type name: str :param database: the database for which the retention policy is dropped. Defaults to current clien...	[ "def", "drop_retention_policy", "(", "self", ",", "name", ",", "database", "=", "None", ")", ":", "query_string", "=", "(", "\"DROP RETENTION POLICY {0} ON {1}\"", ")", ".", "format", "(", "quote_ident", "(", "name", ")", ",", "quote_ident", "(", "database", "...	42.846154	16.769231
def message(blockers): """Create a sequence of key messages based on what is blocking.""" if not blockers: encoding = getattr(sys.stdout, 'encoding', '') if encoding: encoding = encoding.lower() if encoding == 'utf-8': # party hat flair = "\U0001F389 ...	[ "def", "message", "(", "blockers", ")", ":", "if", "not", "blockers", ":", "encoding", "=", "getattr", "(", "sys", ".", "stdout", ",", "'encoding'", ",", "''", ")", "if", "encoding", ":", "encoding", "=", "encoding", ".", "lower", "(", ")", "if", "en...	42.166667	13.566667
async def set_presence(self, status: str = "online", ignore_cache: bool = False): """ Set the online status of the user. See also: `API reference`_ Args: status: The online status of the user. Allowed values: "online", "offline", "unavailable". ignore_cache: Whether or n...	[ "async", "def", "set_presence", "(", "self", ",", "status", ":", "str", "=", "\"online\"", ",", "ignore_cache", ":", "bool", "=", "False", ")", ":", "await", "self", ".", "ensure_registered", "(", ")", "if", "not", "ignore_cache", "and", "self", ".", "st...	42.809524	29.095238
def calcMzFromMass(mass, charge): """Calculate the mz value of a peptide from its mass and charge. :param mass: float, exact non protonated mass :param charge: int, charge state :returns: mass to charge ratio of the specified charge state """ mz = (mass + (maspy.constants.atomicMassProton * ch...	[ "def", "calcMzFromMass", "(", "mass", ",", "charge", ")", ":", "mz", "=", "(", "mass", "+", "(", "maspy", ".", "constants", ".", "atomicMassProton", "*", "charge", ")", ")", "/", "charge", "return", "mz" ]	34	18.1
def _partialParseDateStd(self, s, sourceTime): """ test if giving C{s} matched CRE_DATE, used by L{parse()} @type s: string @param s: date/time text to evaluate @type sourceTime: struct_time @param sourceTime: C{struct_time} value to use as the base ...	[ "def", "_partialParseDateStd", "(", "self", ",", "s", ",", "sourceTime", ")", ":", "parseStr", "=", "None", "chunk1", "=", "chunk2", "=", "''", "# Standard date format", "m", "=", "self", ".", "ptc", ".", "CRE_DATE", ".", "search", "(", "s", ")", "if", ...	31.675676	17.297297
def search_databases(self, search_term, location=None, markets_only=False, databases_to_search=None, allow_internal=False): """ Search external databases linked to your lcopt model. To restrict the search to particular databases (e.g. technosphere or biosphere only) use a list of database name...	[ "def", "search_databases", "(", "self", ",", "search_term", ",", "location", "=", "None", ",", "markets_only", "=", "False", ",", "databases_to_search", "=", "None", ",", "allow_internal", "=", "False", ")", ":", "dict_list", "=", "[", "]", "if", "allow_inte...	40.068182	29.795455
def pass_q_v1(self): """Update the outlet link sequence.""" flu = self.sequences.fluxes.fastaccess out = self.sequences.outlets.fastaccess out.q[0] += flu.qa	[ "def", "pass_q_v1", "(", "self", ")", ":", "flu", "=", "self", ".", "sequences", ".", "fluxes", ".", "fastaccess", "out", "=", "self", ".", "sequences", ".", "outlets", ".", "fastaccess", "out", ".", "q", "[", "0", "]", "+=", "flu", ".", "qa" ]	33.8	8.6
def lookup_package(self, definition_name): """Determines the package name for any definition. Determine the package that any definition name belongs to. May check parent for package name and will resolve missing descriptors if provided descriptor loader. Args: definit...	[ "def", "lookup_package", "(", "self", ",", "definition_name", ")", ":", "while", "True", ":", "descriptor", "=", "self", ".", "lookup_descriptor", "(", "definition_name", ")", "if", "isinstance", "(", "descriptor", ",", "FileDescriptor", ")", ":", "return", "d...	36.55	18.2
def auto_cleaned_path_stripped_uuid4(instance, filename: str) -> str: """ Gets upload path in this format: {MODEL_NAME}/{UUID4}{SUFFIX}. Same as `upload_path_uuid4` but deletes the original file name from the user. :param instance: Instance of model or model class. :param filename: Uploaded file na...	[ "def", "auto_cleaned_path_stripped_uuid4", "(", "instance", ",", "filename", ":", "str", ")", "->", "str", ":", "_", ",", "suffix", "=", "parse_filename", "(", "filename", ")", "base_dir", "=", "get_base_dir_from_object", "(", "instance", ")", "rand_uuid", "=", ...	42.266667	20
def get_item_attribute(self, item, name): """ Method called by item when an attribute is not found. """ if name in self.__item_attributes: return self.__item_attributes[name](item) elif self.section: return self.section.get_item_attribute(item, name) ...	[ "def", "get_item_attribute", "(", "self", ",", "item", ",", "name", ")", ":", "if", "name", "in", "self", ".", "__item_attributes", ":", "return", "self", ".", "__item_attributes", "[", "name", "]", "(", "item", ")", "elif", "self", ".", "section", ":", ...	35.8	10.2
def create_vector_input(self, name='vector_observation'): """ Creates ops for vector observation input. :param name: Name of the placeholder op. :param vec_obs_size: Size of stacked vector observation. :return: """ self.vector_in = tf.placeholder(shape=[None, self...	[ "def", "create_vector_input", "(", "self", ",", "name", "=", "'vector_observation'", ")", ":", "self", ".", "vector_in", "=", "tf", ".", "placeholder", "(", "shape", "=", "[", "None", ",", "self", ".", "vec_obs_size", "]", ",", "dtype", "=", "tf", ".", ...	57.56	28.84
def _emiss_ep(self, Eph): """ Electron-proton bremsstrahlung emissivity per unit photon energy """ if self.weight_ep == 0.0: return np.zeros_like(Eph) gam = np.vstack(self._gam) eps = (Eph / mec2).decompose().value # compute integral with electron dis...	[ "def", "_emiss_ep", "(", "self", ",", "Eph", ")", ":", "if", "self", ".", "weight_ep", "==", "0.0", ":", "return", "np", ".", "zeros_like", "(", "Eph", ")", "gam", "=", "np", ".", "vstack", "(", "self", ".", "_gam", ")", "eps", "=", "(", "Eph", ...	32.125	13.125
def XKX(self): """ compute self covariance for rest """ cov_beta = np.zeros((self.dof,self.dof)) start_row = 0 #This is trivially parallelizable: for term1 in range(self.len): stop_row = start_row + self.A[term1].shape[0] * self.F[term1].shape[1] ...	[ "def", "XKX", "(", "self", ")", ":", "cov_beta", "=", "np", ".", "zeros", "(", "(", "self", ".", "dof", ",", "self", ".", "dof", ")", ")", "start_row", "=", "0", "#This is trivially parallelizable:", "for", "term1", "in", "range", "(", "self", ".", "...	50.421053	23.157895
def phymem_usage(): """Return the amount of total, used and free physical memory on the system in bytes plus the percentage usage. Deprecated by psutil.virtual_memory(). """ mem = virtual_memory() return _nt_sysmeminfo(mem.total, mem.used, mem.free, mem.percent)	[ "def", "phymem_usage", "(", ")", ":", "mem", "=", "virtual_memory", "(", ")", "return", "_nt_sysmeminfo", "(", "mem", ".", "total", ",", "mem", ".", "used", ",", "mem", ".", "free", ",", "mem", ".", "percent", ")" ]	40	11.285714
def process(self, request, response, environ): """ Create a new access token. :param request: The incoming :class:`oauth2.web.Request`. :param response: The :class:`oauth2.web.Response` that will be returned to the client. :param environ: A ``dict`` cont...	[ "def", "process", "(", "self", ",", "request", ",", "response", ",", "environ", ")", ":", "token_data", "=", "self", ".", "token_generator", ".", "create_access_token_data", "(", "self", ".", "refresh_grant_type", ")", "expires_at", "=", "int", "(", "time", ...	42.972222	25.25
def get_devices_from_response_dict(response_dict, device_type): """ :rtype: list of WinkDevice """ items = response_dict.get('data') devices = [] api_interface = WinkApiInterface() check_list = isinstance(device_type, (list,)) for item in items: if (check_list and get_object_t...	[ "def", "get_devices_from_response_dict", "(", "response_dict", ",", "device_type", ")", ":", "items", "=", "response_dict", ".", "get", "(", "'data'", ")", "devices", "=", "[", "]", "api_interface", "=", "WinkApiInterface", "(", ")", "check_list", "=", "isinstan...	29.421053	18.789474
def _request(self, method, path, params=None): """Make the actual request and returns the parsed response.""" url = self._base_url + path try: if method == 'GET': response = requests.get(url, timeout=TIMEOUT) elif method == "POST": respons...	[ "def", "_request", "(", "self", ",", "method", ",", "path", ",", "params", "=", "None", ")", ":", "url", "=", "self", ".", "_base_url", "+", "path", "try", ":", "if", "method", "==", "'GET'", ":", "response", "=", "requests", ".", "get", "(", "url"...	39.166667	13.083333
def present(name, running=None, source=None, profiles=None, config=None, devices=None, architecture='x86_64', ephemeral=False, restart_on_change=False, remote_addr=None, cert=None, key=Non...	[ "def", "present", "(", "name", ",", "running", "=", "None", ",", "source", "=", "None", ",", "profiles", "=", "None", ",", "config", "=", "None", ",", "devices", "=", "None", ",", "architecture", "=", "'x86_64'", ",", "ephemeral", "=", "False", ",", ...	28.072368	19.230263
def parse_args(self): """Parse CLI args.""" Args(self.tcex.parser) self.args = self.tcex.args	[ "def", "parse_args", "(", "self", ")", ":", "Args", "(", "self", ".", "tcex", ".", "parser", ")", "self", ".", "args", "=", "self", ".", "tcex", ".", "args" ]	28.5	8.75
def keras_dropout(layer, rate): '''keras dropout layer. ''' from keras import layers input_dim = len(layer.input.shape) if input_dim == 2: return layers.SpatialDropout1D(rate) elif input_dim == 3: return layers.SpatialDropout2D(rate) elif input_dim == 4: return laye...	[ "def", "keras_dropout", "(", "layer", ",", "rate", ")", ":", "from", "keras", "import", "layers", "input_dim", "=", "len", "(", "layer", ".", "input", ".", "shape", ")", "if", "input_dim", "==", "2", ":", "return", "layers", ".", "SpatialDropout1D", "(",...	25.133333	16.466667
def pca( data: Union[AnnData, np.ndarray, spmatrix], n_comps: int = N_PCS, zero_center: Optional[bool] = True, svd_solver: str = 'auto', random_state: int = 0, return_info: bool = False, use_highly_variable: Optional[bool] = None, dtype: str = 'float32', copy: bool = False, chunk...	[ "def", "pca", "(", "data", ":", "Union", "[", "AnnData", ",", "np", ".", "ndarray", ",", "spmatrix", "]", ",", "n_comps", ":", "int", "=", "N_PCS", ",", "zero_center", ":", "Optional", "[", "bool", "]", "=", "True", ",", "svd_solver", ":", "str", "...	41.773481	24.314917
def procrustes(source, target, scaling=True, reflection=True, reduction=False, oblique=False, oblique_rcond=-1, format_data=True): """ Function to project from one space to another using Procrustean transformation (shift + scaling + rotation + reflection). The implementation of this func...	[ "def", "procrustes", "(", "source", ",", "target", ",", "scaling", "=", "True", ",", "reflection", "=", "True", ",", "reduction", "=", "False", ",", "oblique", "=", "False", ",", "oblique_rcond", "=", "-", "1", ",", "format_data", "=", "True", ")", ":"...	32.966887	22.874172
def fetch(weeks, force): """Fetch newest PageViews and Downloads.""" weeks = get_last_weeks(weeks) print(weeks) recommender = RecordRecommender(config) recommender.fetch_weeks(weeks, overwrite=force)	[ "def", "fetch", "(", "weeks", ",", "force", ")", ":", "weeks", "=", "get_last_weeks", "(", "weeks", ")", "print", "(", "weeks", ")", "recommender", "=", "RecordRecommender", "(", "config", ")", "recommender", ".", "fetch_weeks", "(", "weeks", ",", "overwri...	35.666667	10.166667
def create_constants(self, rdbms): """ Factory for creating a Constants objects (i.e. objects for creating constants based on column widths, and auto increment columns and labels). :param str rdbms: The target RDBMS (i.e. mysql, mssql or pgsql). :rtype: pystratum.Constants.Cons...	[ "def", "create_constants", "(", "self", ",", "rdbms", ")", ":", "# Note: We load modules and classes dynamically such that on the end user's system only the required modules", "# and other dependencies for the targeted RDBMS must be installed (and required modules and other", "# depe...	42.807692	26.884615
def load_from_module(self, module): '''Load all benchmarks from a given module''' benchmarks = [] for name in dir(module): obj = getattr(module, name) if (inspect.isclass(obj) and issubclass(obj, Benchmark) and obj != Benchmark): benchm...	[ "def", "load_from_module", "(", "self", ",", "module", ")", ":", "benchmarks", "=", "[", "]", "for", "name", "in", "dir", "(", "module", ")", ":", "obj", "=", "getattr", "(", "module", ",", "name", ")", "if", "(", "inspect", ".", "isclass", "(", "o...	39.333333	10
def evaluate_all(ctx, model): """Evaluate POS taggers on WSJ and GENIA.""" click.echo('chemdataextractor.pos.evaluate_all') click.echo('Model: %s' % model) ctx.invoke(evaluate, model='%s_wsj_nocluster.pickle' % model, corpus='wsj', clusters=False) ctx.invoke(evaluate, model='%s_wsj_nocluster.pickle'...	[ "def", "evaluate_all", "(", "ctx", ",", "model", ")", ":", "click", ".", "echo", "(", "'chemdataextractor.pos.evaluate_all'", ")", "click", ".", "echo", "(", "'Model: %s'", "%", "model", ")", "ctx", ".", "invoke", "(", "evaluate", ",", "model", "=", "'%s_w...	80.125	41.625
def enable(self, timeout=0): """ Enable the plugin. Args: timeout (int): Timeout in seconds. Default: 0 Raises: :py:class:`docker.errors.APIError` If the server returns an error. """ self.client.api.enable_...	[ "def", "enable", "(", "self", ",", "timeout", "=", "0", ")", ":", "self", ".", "client", ".", "api", ".", "enable_plugin", "(", "self", ".", "name", ",", "timeout", ")", "self", ".", "reload", "(", ")" ]	27.384615	17.230769
def _property_table(): """Download the PDB -> resolution table directly from the RCSB PDB REST service. See the other fields that you can get here: http://www.rcsb.org/pdb/results/reportField.do Returns: Pandas DataFrame: table of structureId as the index, resolution and experimentalTechnique as t...	[ "def", "_property_table", "(", ")", ":", "url", "=", "'http://www.rcsb.org/pdb/rest/customReport.csv?pdbids=*&customReportColumns=structureId,resolution,experimentalTechnique,releaseDate&service=wsfile&format=csv'", "r", "=", "requests", ".", "get", "(", "url", ")", "p", "=", "pd...	46.076923	37.384615
def apply(self, styles=None, verbose=False): """ Applies the specified style to the selected views and returns the SUIDs of the affected views. :param styles (string): Name of Style to be applied to the selected views. = ['Directed', 'BioPAX_SIF', 'Bridging Reads Histogram:u...	[ "def", "apply", "(", "self", ",", "styles", "=", "None", ",", "verbose", "=", "False", ")", ":", "PARAMS", "=", "set_param", "(", "[", "\"styles\"", "]", ",", "[", "styles", "]", ")", "response", "=", "api", "(", "url", "=", "self", ".", "__url", ...	55.962963	29.148148
def replace(s, pattern, replacement): """Replaces occurrences of a match string in a given string and returns the new string. The match string can be a regex expression. Args: s (str): the string to modify pattern (str): the search expression replacement (str): the...	[ "def", "replace", "(", "s", ",", "pattern", ",", "replacement", ")", ":", "# the replacement string may contain invalid backreferences (like \\1 or \\g)", "# which will cause python's regex to blow up. Since this should emulate", "# the jam version exactly and the jam version didn't support"...	45.7	17.25
def clear(self, rows=None): """Reset episodes in the memory. Internally, this only sets their lengths to zero. The memory entries will be overridden by future calls to append() or replace(). Args: rows: Episodes to clear, defaults to all. Returns: Operation. """ rows = tf.rang...	[ "def", "clear", "(", "self", ",", "rows", "=", "None", ")", ":", "rows", "=", "tf", ".", "range", "(", "self", ".", "_capacity", ")", "if", "rows", "is", "None", "else", "rows", "assert", "rows", ".", "shape", ".", "ndims", "==", "1", "return", "...	30.133333	22.466667
def _create_decoration(self, selection_start, selection_end): """ Creates the text occurences decoration """ deco = TextDecoration(self.editor.document(), selection_start, selection_end) deco.set_background(QtGui.QBrush(self.background)) deco.set_outline(sel...	[ "def", "_create_decoration", "(", "self", ",", "selection_start", ",", "selection_end", ")", ":", "deco", "=", "TextDecoration", "(", "self", ".", "editor", ".", "document", "(", ")", ",", "selection_start", ",", "selection_end", ")", "deco", ".", "set_backgro...	46.222222	12.444444
def get_rev_id(localRepoPath): """returns the current full git revision id of the specified local repository. Expected method of execution: python subroutine call Parameters ---------- localRepoPath: string Local repository path. Returns ======= full git revision ID of the spec...	[ "def", "get_rev_id", "(", "localRepoPath", ")", ":", "start_path", "=", "os", ".", "getcwd", "(", ")", "try", ":", "os", ".", "chdir", "(", "localRepoPath", ")", "instream", "=", "os", ".", "popen", "(", "\"git --no-pager log --max-count=1 \| head -1\"", ")", ...	28.419355	22.16129
def filter(self, func, axis=(0,)): """ Filter array along an axis. Applies a function which should evaluate to boolean, along a single axis or multiple axes. Array will be aligned so that the desired set of axes are in the keys, which may require a transpose/reshape. ...	[ "def", "filter", "(", "self", ",", "func", ",", "axis", "=", "(", "0", ",", ")", ")", ":", "axes", "=", "sorted", "(", "tupleize", "(", "axis", ")", ")", "reshaped", "=", "self", ".", "_align", "(", "axes", ")", "filtered", "=", "asarray", "(", ...	27.962963	18.777778
def _delLocalOwnerRole(self, username): """Remove local owner role from parent object """ parent = self.getParent() if parent.portal_type == "Client": parent.manage_delLocalRoles([username]) # reindex object security self._recursive_reindex_object_secu...	[ "def", "_delLocalOwnerRole", "(", "self", ",", "username", ")", ":", "parent", "=", "self", ".", "getParent", "(", ")", "if", "parent", ".", "portal_type", "==", "\"Client\"", ":", "parent", ".", "manage_delLocalRoles", "(", "[", "username", "]", ")", "# r...	40.625	5.375
def helper_parallel_lines(start0, end0, start1, end1, filename): """Image for :func:`.parallel_lines_parameters` docstring.""" if NO_IMAGES: return figure = plt.figure() ax = figure.gca() points = stack1d(start0, end0, start1, end1) ax.plot(points[0, :2], points[1, :2], marker="o") ...	[ "def", "helper_parallel_lines", "(", "start0", ",", "end0", ",", "start1", ",", "end1", ",", "filename", ")", ":", "if", "NO_IMAGES", ":", "return", "figure", "=", "plt", ".", "figure", "(", ")", "ax", "=", "figure", ".", "gca", "(", ")", "points", "...	34.769231	16.076923
async def metrics(self, offs, size=None): ''' Yield metrics rows starting at offset. Args: offs (int): The index offset. size (int): The maximum number of records to yield. Yields: ((int, dict)): An index offset, info tuple for metrics. ''' ...	[ "async", "def", "metrics", "(", "self", ",", "offs", ",", "size", "=", "None", ")", ":", "for", "i", ",", "(", "indx", ",", "item", ")", "in", "enumerate", "(", "self", ".", "_metrics", ".", "iter", "(", "offs", ")", ")", ":", "if", "size", "is...	27.705882	23
def finished(self): """ Mark the activity as finished """ self.data_service.update_activity(self.id, self.name, self.desc, started_on=self.started, ended_on=self._current_timestamp_str())	[ "def", "finished", "(", "self", ")", ":", "self", ".", "data_service", ".", "update_activity", "(", "self", ".", "id", ",", "self", ".", "name", ",", "self", ".", "desc", ",", "started_on", "=", "self", ".", "started", ",", "ended_on", "=", "self", "...	42.428571	17.571429
def print_http_nfc_lease_info(info): """ Prints information about the lease, such as the entity covered by the lease, and HTTP URLs for up/downloading file backings. :param info: :type info: vim.HttpNfcLease.Info :return: """ print 'Lease timeout: {0.leaseTimeout}\n' \ 'Disk Ca...	[ "def", "print_http_nfc_lease_info", "(", "info", ")", ":", "print", "'Lease timeout: {0.leaseTimeout}\\n'", "'Disk Capacity KB: {0.totalDiskCapacityInKB}'", ".", "format", "(", "info", ")", "device_number", "=", "1", "if", "info", ".", "deviceUrl", ":", "for", "device_u...	42.107143	16.035714
def vcpu_pin(vm_, vcpu, cpus): ''' Set which CPUs a VCPU can use. CLI Example: .. code-block:: bash salt 'foo' virt.vcpu_pin domU-id 2 1 salt 'foo' virt.vcpu_pin domU-id 2 2-6 ''' with _get_xapi_session() as xapi: vm_uuid = _get_label_uuid(xapi, 'VM', vm_) if ...	[ "def", "vcpu_pin", "(", "vm_", ",", "vcpu", ",", "cpus", ")", ":", "with", "_get_xapi_session", "(", ")", "as", "xapi", ":", "vm_uuid", "=", "_get_label_uuid", "(", "xapi", ",", "'VM'", ",", "vm_", ")", "if", "vm_uuid", "is", "False", ":", "return", ...	32.886792	18.207547
def to_tuple(self): """Cast to tuple. Returns ------- tuple The confusion table as a 4-tuple (tp, tn, fp, fn) Example ------- >>> ct = ConfusionTable(120, 60, 20, 30) >>> ct.to_tuple() (120, 60, 20, 30) """ return sel...	[ "def", "to_tuple", "(", "self", ")", ":", "return", "self", ".", "_tp", ",", "self", ".", "_tn", ",", "self", ".", "_fp", ",", "self", ".", "_fn" ]	21.25	21.25
def setPrefilter(self, edfsignal, prefilter): """ Sets the prefilter of signal edfsignal ("HP:0.1Hz", "LP:75Hz N:50Hz", etc.) :param edfsignal: int :param prefilter: str Notes ----- This function is optional for every signal and can be called only after opening ...	[ "def", "setPrefilter", "(", "self", ",", "edfsignal", ",", "prefilter", ")", ":", "if", "edfsignal", "<", "0", "or", "edfsignal", ">", "self", ".", "n_channels", ":", "raise", "ChannelDoesNotExist", "(", "edfsignal", ")", "self", ".", "channels", "[", "edf...	38.133333	24.4
def getAdditionalImages(self): ''' The same as calling ``client.getAdditionalImages(build.setID)``. :returns: A list of URL strings. :rtype: list ''' self._additionalImages = self._client.getAdditionalImages(self.setID) return self._additionalImages	[ "def", "getAdditionalImages", "(", "self", ")", ":", "self", ".", "_additionalImages", "=", "self", ".", "_client", ".", "getAdditionalImages", "(", "self", ".", "setID", ")", "return", "self", ".", "_additionalImages" ]	29.8	24
def wnfltd(small, window): """ Filter (remove) small intervals from a double precision window. http://naif.jpl.nasa.gov/pub/naif/toolkit_docs/C/cspice/wnfltd_c.html :param small: Limiting measure of small intervals. :type small: float :param window: Window to be filtered. :type window: s...	[ "def", "wnfltd", "(", "small", ",", "window", ")", ":", "assert", "isinstance", "(", "window", ",", "stypes", ".", "SpiceCell", ")", "assert", "window", ".", "dtype", "==", "1", "small", "=", "ctypes", ".", "c_double", "(", "small", ")", "libspice", "....	33.888889	15.777778
def _check_file(parameters): """Return list of errors.""" (filename, args) = parameters if filename == '-': contents = sys.stdin.read() else: with contextlib.closing( docutils.io.FileInput(source_path=filename) ) as input_file: contents = input_file.read(...	[ "def", "_check_file", "(", "parameters", ")", ":", "(", "filename", ",", "args", ")", "=", "parameters", "if", "filename", "==", "'-'", ":", "contents", "=", "sys", ".", "stdin", ".", "read", "(", ")", "else", ":", "with", "contextlib", ".", "closing",...	30.9375	16.4375
async def _handle_bad_notification(self, message): """ Adjusts the current state to be correct based on the received bad message notification whenever possible: bad_msg_notification#a7eff811 bad_msg_id:long bad_msg_seqno:int error_code:int = BadMsgNotification; "...	[ "async", "def", "_handle_bad_notification", "(", "self", ",", "message", ")", ":", "bad_msg", "=", "message", ".", "obj", "states", "=", "self", ".", "_pop_states", "(", "bad_msg", ".", "bad_msg_id", ")", "self", ".", "_log", ".", "debug", "(", "'Handling ...	44.657143	17.685714
def Colebrook(Re, eD, tol=None): r'''Calculates Darcy friction factor using the Colebrook equation originally published in [1]_. Normally, this function uses an exact solution to the Colebrook equation, derived with a CAS. A numerical can also be used. .. math:: \frac{1}{\sqrt{f}}=-2\log_...	[ "def", "Colebrook", "(", "Re", ",", "eD", ",", "tol", "=", "None", ")", ":", "if", "tol", "==", "-", "1", ":", "if", "Re", ">", "10.0", ":", "return", "Clamond", "(", "Re", ",", "eD", ")", "else", ":", "tol", "=", "None", "elif", "tol", "==",...	38.724138	24.42069
def set_hash_value(self, key, field, value, pipeline=False): """Set the value of field in a hash stored at key. Args: key (str): key (name) of the hash field (str): Field within the hash to set value: Value to set pipeline (bool): True, start a transactio...	[ "def", "set_hash_value", "(", "self", ",", "key", ",", "field", ",", "value", ",", "pipeline", "=", "False", ")", ":", "# FIXME(BMo): new name for this function -> save_dict_value ?", "if", "pipeline", ":", "self", ".", "_pipeline", ".", "hset", "(", "key", ",",...	36.866667	19.333333
def receive(host, timeout): """ Print all messages in queue. Args: host (str): Specified --host. timeout (int): How log should script wait for message. """ parameters = settings.get_amqp_settings()[host] queues = parameters["queues"] queues = dict(map(lambda (x, y): (y, x),...	[ "def", "receive", "(", "host", ",", "timeout", ")", ":", "parameters", "=", "settings", ".", "get_amqp_settings", "(", ")", "[", "host", "]", "queues", "=", "parameters", "[", "\"queues\"", "]", "queues", "=", "dict", "(", "map", "(", "lambda", "(", "x...	29	17.8
def readMyEC2Tag(tagName, connection=None): """ Load an EC2 tag for the running instance & print it. :param str tagName: Name of the tag to read :param connection: Optional boto connection """ assert isinstance(tagName, basestring), ("tagName must be a string but is %r" % tagName) # Load metadata. if ==...	[ "def", "readMyEC2Tag", "(", "tagName", ",", "connection", "=", "None", ")", ":", "assert", "isinstance", "(", "tagName", ",", "basestring", ")", ",", "(", "\"tagName must be a string but is %r\"", "%", "tagName", ")", "# Load metadata. if == {} we are on localhost", "...	38	20.631579

def main(): """Read configuration and execute test runs.""" parser = argparse.ArgumentParser(description='Stress test applications.') parser.add_argument('config_path', help='Path to configuration file.') args = parser.parse_args() try: configuration = load_configuration(args.config_path) ...

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41.65

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def pop(self, key, default=__marker): '''od.pop(k[,d]) -> v, remove specified key and return the corresponding value. If key is not found, d is returned if given, otherwise KeyError is raised. ''' if key in self: result = self[key] del self[key] retur...

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def read_namespaced_deployment_scale(self, name, namespace, **kwargs): """ read scale of the specified Deployment This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True >>> thread = api.read_namespaced_deployment_...

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def _potential_wins(self): '''Generates all the combinations of board positions that need to be checked for a win.''' yield from self.board yield from zip(*self.board) yield self.board[0][0], self.board[1][1], self.board[2][2] yield self.board[0][2], self.board[1][1], sel...

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16.714286

def clear_cache(self, items=None, topic=EVENT_TOPIC): """ expects event object to be in the format of a session-stop or session-expire event, whose results attribute is a namedtuple(identifiers, session_key) """ try: for realm in self.realms: i...

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def set_attribute(self, attribute, attribute_state): """Get an attribute from the session. :param attribute: :return: attribute value, status code :rtype: object, constants.StatusCode """ # Check that the attribute exists. try: attr = attributes.Attr...

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34

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def import_module_from_fpath(module_fpath): r""" imports module from a file path Args: module_fpath (str): Returns: module: module CommandLine: python -m utool.util_import --test-import_module_from_fpath Example: >>> # DISABLE_DOCTEST >>> from utool.util_i...

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def get_affiliation_details(self, value, affiliation_id, institute_literal): """ This method is used to map the Affiliation between an author and Institution. Parameters ---------- value - The author name affiliation_id - Primary key of the affiliation table inst...

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32

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def __random_density_bures(N, rank=None, seed=None): """ Generate a random density matrix from the Bures metric. Args: N (int): the length of the density matrix. rank (int or None): the rank of the density matrix. The default value is full-rank. seed (int): Optional. To ...

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33.25

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def _computeforce(self,R,z,phi=0,t=0): """ NAME: _computeforce PURPOSE: Evaluate the first derivative of Phi with respect to R, z and phi INPUT: R - Cylindrical Galactocentric radius z - vertical height phi - azimuth t - t...

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38.244444

15.844444

def bna_config_cmd_status_input_session_id(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") bna_config_cmd_status = ET.Element("bna_config_cmd_status") config = bna_config_cmd_status input = ET.SubElement(bna_config_cmd_status, "input") se...

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41.333333

13.583333

def add_to_subset(self, id, s): """ Adds a node to a subset """ n = self.node(id) if 'meta' not in n: n['meta'] = {} meta = n['meta'] if 'subsets' not in meta: meta['subsets'] = [] meta['subsets'].append(s)

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25.818182

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def verify(self, authenticators): """Verify this OMAPI message. >>> a1 = OmapiHMACMD5Authenticator(b"egg", b"spam") >>> a2 = OmapiHMACMD5Authenticator(b"egg", b"tomatoes") >>> a1.authid = a2.authid = 5 >>> m = OmapiMessage.open(b"host") >>> m.verify({a1.authid: a1}) False >>> m.sign(a1) >>> m.verify(...

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25.695652

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def verify(self, connection_type=None): """ Verifies and update the remote system settings. :param connection_type: same as the one in `create` method. """ req_body = self._cli.make_body(connectionType=connection_type) resp = self.action('verify', **req_body) re...

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def tie_weights(self): """ Run this to be sure output and input (adaptive) softmax weights are tied """ # sampled softmax if self.sample_softmax > 0: if self.config.tie_weight: self.out_layer.weight = self.transformer.word_emb.weight # adaptive softmax (includ...

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58.411765

24.058824

def getaddresses(fieldvalues): """Return a list of (REALNAME, EMAIL) for each fieldvalue.""" all = COMMASPACE.join(fieldvalues) a = _AddressList(all) return a.addresslist

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36.4

8.6

def authenticate(self, req, resp, resource): """ Extract basic auth token from request `authorization` header, deocode the token, verifies the username/password and return either a ``user`` object if successful else raise an `falcon.HTTPUnauthoried exception` """ usernam...

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42

18.923077

def resolve_parameters(value, parameters, date_time=datetime.datetime.now(), macros=False): """ Resolve a format modifier with the corresponding value. Args: value: The string (path, table, or any other artifact in a cell_body) which may have format modifiers. E.g. a table name could be <projec...

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63.904762

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def scale_dataset(self, dsid, variable, info): """Scale the data set, applying the attributes from the netCDF file""" variable = remove_empties(variable) scale = variable.attrs.get('scale_factor', np.array(1)) offset = variable.attrs.get('add_offset', np.array(0)) if np.issubdty...

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49.288136

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def _append_hdu_info(self, ext): """ internal routine append info for indiciated extension """ # raised IOError if not found hdu_type = self._FITS.movabs_hdu(ext+1) if hdu_type == IMAGE_HDU: hdu = ImageHDU(self._FITS, ext, **self.keys) elif ...

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32.052632

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def get_dimension_type(self, dim): """Get the type of the requested dimension. Type is determined by Dimension.type attribute or common type of the dimension values, otherwise None. Args: dimension: Dimension to look up by name or by index Returns: Decl...

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30.95

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def where(self, column_or_label, value_or_predicate=None, other=None): """ Return a new ``Table`` containing rows where ``value_or_predicate`` returns True for values in ``column_or_label``. Args: ``column_or_label``: A column of the ``Table`` either as a label (...

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42.789474

20.894737

def equal_to_be(self, be_record): # type: (PathTableRecord) -> bool ''' A method to compare a little-endian path table record to its big-endian counterpart. This is used to ensure that the ISO is sane. Parameters: be_record - The big-endian object to compare with the l...

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43.956522

26.652174

def upload_video(self, media, media_type, media_category=None, size=None, check_progress=False): """Uploads video file to Twitter servers in chunks. The file will be available to be attached to a status for 60 minutes. To attach to a update, pass a list of returned media ids to the :meth:`update...

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37.965909

23.306818

def centerdc_2_twosided(data): """Convert a center-dc PSD to a twosided PSD""" N = len(data) newpsd = np.concatenate((data[N//2:], (cshift(data[0:N//2], -1)))) return newpsd

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37

17.2

def measurements_to_bf(measurements: np.ndarray) -> float: """ Convert measurements into gradient binary fraction. :param measurements: Output measurements of gradient program. :return: Binary fraction representation of gradient estimate. """ try: measurements.sum(axis=0) except Att...

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30.473684

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def save(self, filename, clobber=True, **kwargs): """ Save the `Spectrum1D` object to the specified filename. :param filename: The filename to save the Spectrum1D object to. :type filename: str :param clobber: [optional] Whether to o...

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35.982456

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def getclusters(self, count): """ Generates *count* clusters. :param count: The amount of clusters that should be generated. count must be greater than ``1``. :raises ClusteringError: if *count* is out of bounds. """ # only proceed if we got sensible input ...

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def warning(lineno, msg): """ Generic warning error routine """ msg = "%s:%i: warning: %s" % (global_.FILENAME, lineno, msg) msg_output(msg) global_.has_warnings += 1

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30.166667

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def flatten(x): """flatten(sequence) -> list Returns a single, flat list which contains all elements retrieved from the sequence and all recursively contained sub-sequences (iterables). Examples: >>> [1, 2, [3,4], (5,6)] [1, 2, [3, 4], (5, 6)] >>> flatten([[[1,2,3], (42,None)], [4,5], ...

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def ratio(value, decimal_places=0, failure_string='N/A'): """ Converts a floating point value a X:1 ratio. Number of decimal places set by the `precision` kwarg. Default is one. """ try: f = float(value) except ValueError: return failure_string return _saferound(f, decim...

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def _generateFirstOrder0(): """ Generate the initial, first order, and second order transition probabilities for 'probability0'. For this model, we generate the following set of sequences: .1 .75 0----1-----2 \ \ \ \ .25 \ \-----3 \ \ .9 .5 \--- 4-----...

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def main(): """Simply merge all trajectories in the working directory""" folder = os.getcwd() print('Merging all files') merge_all_in_folder(folder, delete_other_files=True, # We will only keep one trajectory dynamic_imports=FunctionParameter, ...

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def _citation_sort_key(t: EdgeTuple) -> str: """Make a confusing 4 tuple sortable by citation.""" return '"{}", "{}"'.format(t[3][CITATION][CITATION_TYPE], t[3][CITATION][CITATION_REFERENCE])

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65.666667

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def get_tau_at_quantile(mean, stddev, quantile): """ Returns the value of tau at a given quantile in the form of a dictionary organised by intensity measure """ tau_model = {} for imt in mean: tau_model[imt] = {} for key in mean[imt]: if quantile is None: ...

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36.6875

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def split(x, split_dim, num_or_size_splits, name=None): """Like tf.split. Args: x: a Tensor split_dim: a Dimension in x.shape.dims num_or_size_splits: either an integer dividing split_dim.size or a list of integers adding up to split_dim.size name: an optional string Returns: a list of...

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30.769231

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def p_mp_createClass(p): """mp_createClass : classDeclaration """ # pylint: disable=too-many-branches,too-many-statements,too-many-locals ns = p.parser.handle.default_namespace cc = p[1] try: fixedNS = fixedRefs = fixedSuper = False while not fixedNS or not fix...

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def check_distance_funciton_input(distance_func_name, netinfo): """ Funciton checks distance_func_name, if it is specified as 'default'. Then given the type of the network selects a default distance function. Parameters ---------- distance_func_name : str distance function name. netin...

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def _find_any(self, task_spec): """ Returns any descendants that have the given task spec assigned. :type task_spec: TaskSpec :param task_spec: The wanted task spec. :rtype: list(Task) :returns: The tasks objects that are attached to the given task spec. """ ...

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def generate_map(map, name='url_map'): """ Generates a JavaScript function containing the rules defined in this map, to be used with a MapAdapter's generate_javascript method. If you don't pass a name the returned JavaScript code is an expression that returns a function. Otherwise it's a standalon...

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def get_section_by_sis_id(self, sis_section_id, params={}): """ Return section resource for given sis id. """ return self.get_section( self._sis_id(sis_section_id, sis_field="section"), params)

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def _summary_sim(sim, pars, probs): """Summarize chains together and separately REF: rstan/rstan/R/misc.R Parameters are unraveled in *column-major order*. Parameters ---------- sim : dict dict from from a stanfit fit object, i.e., fit['sim'] pars : Iterable of str paramet...

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42.635135

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def get_series_first_release(self, series_id): """ Get first-release data for a Fred series id. This ignores any revision to the data series. For instance, The US GDP for Q1 2014 was first released to be 17149.6, and then later revised to 17101.3, and 17016.0. This will ignore revisions ...

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39.2

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def auth_tls(self, mount_point='cert', use_token=True): """POST /auth/<mount point>/login :param mount_point: :type mount_point: :param use_token: :type use_token: :return: :rtype: """ return self.login('/v1/auth/{0}/login'.format(mount_point), us...

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29.818182

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def function_exists(FunctionName, region=None, key=None, keyid=None, profile=None): ''' Given a function name, check to see if the given function name exists. Returns True if the given function exists and returns False if the given function does not exist. CLI Example: .. ...

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def three_cornered_hat_phase(phasedata_ab, phasedata_bc, phasedata_ca, rate, taus, function): """ Three Cornered Hat Method Given three clocks A, B, C, we seek to find their variances :math:`\\sigma^2_A`, :math:`\\sigma^2_B`, :math:`\\sigma^2_C`. We measure three phase ...

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def get_aspect(self, xspan, yspan): """ Computes the aspect ratio of the plot """ if self.data_aspect: return (yspan/xspan)*self.data_aspect elif self.aspect == 'equal': return xspan/yspan elif self.aspect == 'square': return 1 ...

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def formfield(self, *args, **kwargs): """ Returns proper formfield, according to empty_values setting (only for ``forms.CharField`` subclasses). There are 3 different formfields: - CharField that stores all empty values as empty strings; - NullCharField that stores all e...

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def get_schema_input_format(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") get_schema = ET.Element("get_schema") config = get_schema input = ET.SubElement(get_schema, "input") format = ET.SubElement(input, "format") format.text =...

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def makeCertHokTokenLoginMethod(stsUrl, stsCert=None): '''Return a function that will call the vim.SessionManager.LoginByToken() after obtaining a HoK SAML token from the STS. The result of this function can be passed as the "loginMethod" to a SessionOrientedStub constructor. @param stsUrl: URL...

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def drop_retention_policy(self, name, database=None): """Drop an existing retention policy for a database. :param name: the name of the retention policy to drop :type name: str :param database: the database for which the retention policy is dropped. Defaults to current clien...

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42.846154

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def message(blockers): """Create a sequence of key messages based on what is blocking.""" if not blockers: encoding = getattr(sys.stdout, 'encoding', '') if encoding: encoding = encoding.lower() if encoding == 'utf-8': # party hat flair = "\U0001F389 ...

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42.166667

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async def set_presence(self, status: str = "online", ignore_cache: bool = False): """ Set the online status of the user. See also: `API reference`_ Args: status: The online status of the user. Allowed values: "online", "offline", "unavailable". ignore_cache: Whether or n...

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def calcMzFromMass(mass, charge): """Calculate the mz value of a peptide from its mass and charge. :param mass: float, exact non protonated mass :param charge: int, charge state :returns: mass to charge ratio of the specified charge state """ mz = (mass + (maspy.constants.atomicMassProton * ch...

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34

18.1

def _partialParseDateStd(self, s, sourceTime): """ test if giving C{s} matched CRE_DATE, used by L{parse()} @type s: string @param s: date/time text to evaluate @type sourceTime: struct_time @param sourceTime: C{struct_time} value to use as the base ...

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def search_databases(self, search_term, location=None, markets_only=False, databases_to_search=None, allow_internal=False): """ Search external databases linked to your lcopt model. To restrict the search to particular databases (e.g. technosphere or biosphere only) use a list of database name...

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def pass_q_v1(self): """Update the outlet link sequence.""" flu = self.sequences.fluxes.fastaccess out = self.sequences.outlets.fastaccess out.q[0] += flu.qa

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33.8

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def lookup_package(self, definition_name): """Determines the package name for any definition. Determine the package that any definition name belongs to. May check parent for package name and will resolve missing descriptors if provided descriptor loader. Args: definit...

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36.55

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def auto_cleaned_path_stripped_uuid4(instance, filename: str) -> str: """ Gets upload path in this format: {MODEL_NAME}/{UUID4}{SUFFIX}. Same as `upload_path_uuid4` but deletes the original file name from the user. :param instance: Instance of model or model class. :param filename: Uploaded file na...

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42.266667

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def get_item_attribute(self, item, name): """ Method called by item when an attribute is not found. """ if name in self.__item_attributes: return self.__item_attributes[name](item) elif self.section: return self.section.get_item_attribute(item, name) ...

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35.8

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def create_vector_input(self, name='vector_observation'): """ Creates ops for vector observation input. :param name: Name of the placeholder op. :param vec_obs_size: Size of stacked vector observation. :return: """ self.vector_in = tf.placeholder(shape=[None, self...

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57.56

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def _emiss_ep(self, Eph): """ Electron-proton bremsstrahlung emissivity per unit photon energy """ if self.weight_ep == 0.0: return np.zeros_like(Eph) gam = np.vstack(self._gam) eps = (Eph / mec2).decompose().value # compute integral with electron dis...

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32.125

13.125

def XKX(self): """ compute self covariance for rest """ cov_beta = np.zeros((self.dof,self.dof)) start_row = 0 #This is trivially parallelizable: for term1 in range(self.len): stop_row = start_row + self.A[term1].shape[0] * self.F[term1].shape[1] ...

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def phymem_usage(): """Return the amount of total, used and free physical memory on the system in bytes plus the percentage usage. Deprecated by psutil.virtual_memory(). """ mem = virtual_memory() return _nt_sysmeminfo(mem.total, mem.used, mem.free, mem.percent)

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40

11.285714

def process(self, request, response, environ): """ Create a new access token. :param request: The incoming :class:`oauth2.web.Request`. :param response: The :class:`oauth2.web.Response` that will be returned to the client. :param environ: A ``dict`` cont...

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42.972222

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def get_devices_from_response_dict(response_dict, device_type): """ :rtype: list of WinkDevice """ items = response_dict.get('data') devices = [] api_interface = WinkApiInterface() check_list = isinstance(device_type, (list,)) for item in items: if (check_list and get_object_t...

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def _request(self, method, path, params=None): """Make the actual request and returns the parsed response.""" url = self._base_url + path try: if method == 'GET': response = requests.get(url, timeout=TIMEOUT) elif method == "POST": respons...

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def present(name, running=None, source=None, profiles=None, config=None, devices=None, architecture='x86_64', ephemeral=False, restart_on_change=False, remote_addr=None, cert=None, key=Non...

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def parse_args(self): """Parse CLI args.""" Args(self.tcex.parser) self.args = self.tcex.args

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28.5

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def keras_dropout(layer, rate): '''keras dropout layer. ''' from keras import layers input_dim = len(layer.input.shape) if input_dim == 2: return layers.SpatialDropout1D(rate) elif input_dim == 3: return layers.SpatialDropout2D(rate) elif input_dim == 4: return laye...

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25.133333

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def pca( data: Union[AnnData, np.ndarray, spmatrix], n_comps: int = N_PCS, zero_center: Optional[bool] = True, svd_solver: str = 'auto', random_state: int = 0, return_info: bool = False, use_highly_variable: Optional[bool] = None, dtype: str = 'float32', copy: bool = False, chunk...

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def procrustes(source, target, scaling=True, reflection=True, reduction=False, oblique=False, oblique_rcond=-1, format_data=True): """ Function to project from one space to another using Procrustean transformation (shift + scaling + rotation + reflection). The implementation of this func...

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32.966887

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def fetch(weeks, force): """Fetch newest PageViews and Downloads.""" weeks = get_last_weeks(weeks) print(weeks) recommender = RecordRecommender(config) recommender.fetch_weeks(weeks, overwrite=force)

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def create_constants(self, rdbms): """ Factory for creating a Constants objects (i.e. objects for creating constants based on column widths, and auto increment columns and labels). :param str rdbms: The target RDBMS (i.e. mysql, mssql or pgsql). :rtype: pystratum.Constants.Cons...

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def load_from_module(self, module): '''Load all benchmarks from a given module''' benchmarks = [] for name in dir(module): obj = getattr(module, name) if (inspect.isclass(obj) and issubclass(obj, Benchmark) and obj != Benchmark): benchm...

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def evaluate_all(ctx, model): """Evaluate POS taggers on WSJ and GENIA.""" click.echo('chemdataextractor.pos.evaluate_all') click.echo('Model: %s' % model) ctx.invoke(evaluate, model='%s_wsj_nocluster.pickle' % model, corpus='wsj', clusters=False) ctx.invoke(evaluate, model='%s_wsj_nocluster.pickle'...

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def enable(self, timeout=0): """ Enable the plugin. Args: timeout (int): Timeout in seconds. Default: 0 Raises: :py:class:`docker.errors.APIError` If the server returns an error. """ self.client.api.enable_...

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def _property_table(): """Download the PDB -> resolution table directly from the RCSB PDB REST service. See the other fields that you can get here: http://www.rcsb.org/pdb/results/reportField.do Returns: Pandas DataFrame: table of structureId as the index, resolution and experimentalTechnique as t...

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def apply(self, styles=None, verbose=False): """ Applies the specified style to the selected views and returns the SUIDs of the affected views. :param styles (string): Name of Style to be applied to the selected views. = ['Directed', 'BioPAX_SIF', 'Bridging Reads Histogram:u...

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def replace(s, pattern, replacement): """Replaces occurrences of a match string in a given string and returns the new string. The match string can be a regex expression. Args: s (str): the string to modify pattern (str): the search expression replacement (str): the...

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def clear(self, rows=None): """Reset episodes in the memory. Internally, this only sets their lengths to zero. The memory entries will be overridden by future calls to append() or replace(). Args: rows: Episodes to clear, defaults to all. Returns: Operation. """ rows = tf.rang...

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def _create_decoration(self, selection_start, selection_end): """ Creates the text occurences decoration """ deco = TextDecoration(self.editor.document(), selection_start, selection_end) deco.set_background(QtGui.QBrush(self.background)) deco.set_outline(sel...

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def get_rev_id(localRepoPath): """returns the current full git revision id of the specified local repository. Expected method of execution: python subroutine call Parameters ---------- localRepoPath: string Local repository path. Returns ======= full git revision ID of the spec...

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def filter(self, func, axis=(0,)): """ Filter array along an axis. Applies a function which should evaluate to boolean, along a single axis or multiple axes. Array will be aligned so that the desired set of axes are in the keys, which may require a transpose/reshape. ...

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def _delLocalOwnerRole(self, username): """Remove local owner role from parent object """ parent = self.getParent() if parent.portal_type == "Client": parent.manage_delLocalRoles([username]) # reindex object security self._recursive_reindex_object_secu...

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def helper_parallel_lines(start0, end0, start1, end1, filename): """Image for :func:`.parallel_lines_parameters` docstring.""" if NO_IMAGES: return figure = plt.figure() ax = figure.gca() points = stack1d(start0, end0, start1, end1) ax.plot(points[0, :2], points[1, :2], marker="o") ...

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async def metrics(self, offs, size=None): ''' Yield metrics rows starting at offset. Args: offs (int): The index offset. size (int): The maximum number of records to yield. Yields: ((int, dict)): An index offset, info tuple for metrics. ''' ...

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def finished(self): """ Mark the activity as finished """ self.data_service.update_activity(self.id, self.name, self.desc, started_on=self.started, ended_on=self._current_timestamp_str())

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def print_http_nfc_lease_info(info): """ Prints information about the lease, such as the entity covered by the lease, and HTTP URLs for up/downloading file backings. :param info: :type info: vim.HttpNfcLease.Info :return: """ print 'Lease timeout: {0.leaseTimeout}\n' \ 'Disk Ca...

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def vcpu_pin(vm_, vcpu, cpus): ''' Set which CPUs a VCPU can use. CLI Example: .. code-block:: bash salt 'foo' virt.vcpu_pin domU-id 2 1 salt 'foo' virt.vcpu_pin domU-id 2 2-6 ''' with _get_xapi_session() as xapi: vm_uuid = _get_label_uuid(xapi, 'VM', vm_) if ...

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def to_tuple(self): """Cast to tuple. Returns ------- tuple The confusion table as a 4-tuple (tp, tn, fp, fn) Example ------- >>> ct = ConfusionTable(120, 60, 20, 30) >>> ct.to_tuple() (120, 60, 20, 30) """ return sel...

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def setPrefilter(self, edfsignal, prefilter): """ Sets the prefilter of signal edfsignal ("HP:0.1Hz", "LP:75Hz N:50Hz", etc.) :param edfsignal: int :param prefilter: str Notes ----- This function is optional for every signal and can be called only after opening ...

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def getAdditionalImages(self): ''' The same as calling ``client.getAdditionalImages(build.setID)``. :returns: A list of URL strings. :rtype: list ''' self._additionalImages = self._client.getAdditionalImages(self.setID) return self._additionalImages

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def wnfltd(small, window): """ Filter (remove) small intervals from a double precision window. http://naif.jpl.nasa.gov/pub/naif/toolkit_docs/C/cspice/wnfltd_c.html :param small: Limiting measure of small intervals. :type small: float :param window: Window to be filtered. :type window: s...

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def _check_file(parameters): """Return list of errors.""" (filename, args) = parameters if filename == '-': contents = sys.stdin.read() else: with contextlib.closing( docutils.io.FileInput(source_path=filename) ) as input_file: contents = input_file.read(...

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async def _handle_bad_notification(self, message): """ Adjusts the current state to be correct based on the received bad message notification whenever possible: bad_msg_notification#a7eff811 bad_msg_id:long bad_msg_seqno:int error_code:int = BadMsgNotification; "...

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def Colebrook(Re, eD, tol=None): r'''Calculates Darcy friction factor using the Colebrook equation originally published in [1]_. Normally, this function uses an exact solution to the Colebrook equation, derived with a CAS. A numerical can also be used. .. math:: \frac{1}{\sqrt{f}}=-2\log_...

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def set_hash_value(self, key, field, value, pipeline=False): """Set the value of field in a hash stored at key. Args: key (str): key (name) of the hash field (str): Field within the hash to set value: Value to set pipeline (bool): True, start a transactio...

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def receive(host, timeout): """ Print all messages in queue. Args: host (str): Specified --host. timeout (int): How log should script wait for message. """ parameters = settings.get_amqp_settings()[host] queues = parameters["queues"] queues = dict(map(lambda (x, y): (y, x),...

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def readMyEC2Tag(tagName, connection=None): """ Load an EC2 tag for the running instance & print it. :param str tagName: Name of the tag to read :param connection: Optional boto connection """ assert isinstance(tagName, basestring), ("tagName must be a string but is %r" % tagName) # Load metadata. if ==...

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20.631579