kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def get(self, name: str, sig: Tuple) -> Optional[object]: """ Return the object representing name if it is cached :param name: name of object :param sig: unique signature of object :return: object if exists and signature matches """ if name not in self._cache: ...	[ "def", "get", "(", "self", ",", "name", ":", "str", ",", "sig", ":", "Tuple", ")", "->", "Optional", "[", "object", "]", ":", "if", "name", "not", "in", "self", ".", "_cache", ":", "return", "None", "if", "self", ".", "_cache", "[", "name", "]", ...	35.933333	9.4
def compute_wcs(key, challenge): """ Compute an WAMP-CRA authentication signature from an authentication challenge and a (derived) key. :param key: The key derived (via PBKDF2) from the secret. :type key: str/bytes :param challenge: The authentication challenge to sign. :type challenge: str...	[ "def", "compute_wcs", "(", "key", ",", "challenge", ")", ":", "key", "=", "key", ".", "encode", "(", "'utf8'", ")", "challenge", "=", "challenge", ".", "encode", "(", "'utf8'", ")", "sig", "=", "hmac", ".", "new", "(", "key", ",", "challenge", ",", ...	32.588235	14.705882
def set_dict_value(dictionary, keys, value): """ Set a value in a (nested) dictionary by defining a list of keys. .. note:: Side-effects This function does not make a copy of dictionary, but directly edits it. Parameters ---------- dictionary : dict keys : List[...	[ "def", "set_dict_value", "(", "dictionary", ",", "keys", ",", "value", ")", ":", "orig", "=", "dictionary", "for", "key", "in", "keys", "[", ":", "-", "1", "]", ":", "dictionary", "=", "dictionary", ".", "setdefault", "(", "key", ",", "{", "}", ")", ...	23.533333	21.533333
def tag_structure(tag, site): """ A tag structure. """ return {'tag_id': tag.pk, 'name': tag.name, 'count': tag.count, 'slug': tag.name, 'html_url': '%s://%s%s' % ( PROTOCOL, site.domain, reverse('zinnia:tag_detail', args=[t...	[ "def", "tag_structure", "(", "tag", ",", "site", ")", ":", "return", "{", "'tag_id'", ":", "tag", ".", "pk", ",", "'name'", ":", "tag", ".", "name", ",", "'count'", ":", "tag", ".", "count", ",", "'slug'", ":", "tag", ".", "name", ",", "'html_url'"...	31.333333	10
def from_labeled_point(rdd, categorical=False, nb_classes=None): """Convert a LabeledPoint RDD back to a pair of numpy arrays :param rdd: LabeledPoint RDD :param categorical: boolean, if labels should be one-hot encode when returned :param nb_classes: optional int, indicating the number of class labels...	[ "def", "from_labeled_point", "(", "rdd", ",", "categorical", "=", "False", ",", "nb_classes", "=", "None", ")", ":", "features", "=", "np", ".", "asarray", "(", "rdd", ".", "map", "(", "lambda", "lp", ":", "from_vector", "(", "lp", ".", "features", ")"...	42.210526	17.210526
def get_config_h_filename(): """Return the path of pyconfig.h.""" if _PYTHON_BUILD: if os.name == "nt": inc_dir = os.path.join(_PROJECT_BASE, "PC") else: inc_dir = _PROJECT_BASE else: inc_dir = get_path('platinclude') return os.path.join(inc_dir, 'pyconfig...	[ "def", "get_config_h_filename", "(", ")", ":", "if", "_PYTHON_BUILD", ":", "if", "os", ".", "name", "==", "\"nt\"", ":", "inc_dir", "=", "os", ".", "path", ".", "join", "(", "_PROJECT_BASE", ",", "\"PC\"", ")", "else", ":", "inc_dir", "=", "_PROJECT_BASE...	31.5	12.9
def save(self): """ Apply a series of actions from a set of (action, arg) tuples, probably as parsed from a URL. Each action is a code into PROCESSORS. Then save the mogrified image. """ from settings import PROCESSORS from .filesystem import makedirs if...	[ "def", "save", "(", "self", ")", ":", "from", "settings", "import", "PROCESSORS", "from", ".", "filesystem", "import", "makedirs", "if", "self", ".", "im", "is", "None", ":", "# If we got here something very strange is going on that I can't even", "# predict.", "retur...	33.64	15.68
def plot_ebands(self, kwargs): """ Plot the band structure. kwargs are passed to the plot method of :class:`ElectronBands`. Returns: `matplotlib` figure """ with self.nscf_task.open_gsr() as gsr: return gsr.ebands.plot(kwargs)	[ "def", "plot_ebands", "(", "self", ",", "", "", "kwargs", ")", ":", "with", "self", ".", "nscf_task", ".", "open_gsr", "(", ")", "as", "gsr", ":", "return", "gsr", ".", "ebands", ".", "plot", "(", "", "", "kwargs", ")" ]	31.888889	16.333333
def is_upstart(conn): """ This helper should only used as a fallback (last resort) as it is not guaranteed that it will be absolutely correct. """ # it may be possible that we may be systemd and the caller never checked # before so lets do that if is_systemd(conn): return False ...	[ "def", "is_upstart", "(", "conn", ")", ":", "# it may be possible that we may be systemd and the caller never checked", "# before so lets do that", "if", "is_systemd", "(", "conn", ")", ":", "return", "False", "# get the initctl executable, if it doesn't exist we can't proceed so we"...	31.857143	19.5
def sigma(htilde, psd = None, low_frequency_cutoff=None, high_frequency_cutoff=None): """ Return the sigma of the waveform. See sigmasq for more details. Parameters ---------- htilde : TimeSeries or FrequencySeries The input vector containing a waveform. psd : {None, FrequencySeries...	[ "def", "sigma", "(", "htilde", ",", "psd", "=", "None", ",", "low_frequency_cutoff", "=", "None", ",", "high_frequency_cutoff", "=", "None", ")", ":", "return", "sqrt", "(", "sigmasq", "(", "htilde", ",", "psd", ",", "low_frequency_cutoff", ",", "high_freque...	36.05	17.75
def replace_wrep(t:str) -> str: "Replace word repetitions in `t`." def _replace_wrep(m:Collection[str]) -> str: c,cc = m.groups() return f' {TK_WREP} {len(cc.split())+1} {c} ' re_wrep = re.compile(r'(\b\w+\W+)(\1{3,})') return re_wrep.sub(_replace_wrep, t)	[ "def", "replace_wrep", "(", "t", ":", "str", ")", "->", "str", ":", "def", "_replace_wrep", "(", "m", ":", "Collection", "[", "str", "]", ")", "->", "str", ":", "c", ",", "cc", "=", "m", ".", "groups", "(", ")", "return", "f' {TK_WREP} {len(cc.split(...	40.285714	7.714286
def upload(self, params={}): """start uploading the file until upload is complete or error. This is the main method to used, If you do not care about state of process. Args: params: a dict object describe video info, eg title, tags, description, ...	[ "def", "upload", "(", "self", ",", "params", "=", "{", "}", ")", ":", "if", "self", ".", "upload_token", "is", "not", "None", ":", "# resume upload", "status", "=", "self", ".", "check", "(", ")", "if", "status", "[", "'status'", "]", "!=", "4", ":...	34.935484	13.612903
def get_stp_mst_detail_output_msti_port_if_state(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") get_stp_mst_detail = ET.Element("get_stp_mst_detail") config = get_stp_mst_detail output = ET.SubElement(get_stp_mst_detail, "output") msti =...	[ "def", "get_stp_mst_detail_output_msti_port_if_state", "(", "self", ",", "", "", "kwargs", ")", ":", "config", "=", "ET", ".", "Element", "(", "\"config\"", ")", "get_stp_mst_detail", "=", "ET", ".", "Element", "(", "\"get_stp_mst_detail\"", ")", "config", "="...	42.8125	12.375
def yml_fnc(fname, args, *options): """ :param fname: "load" or "dump", not checked but it should be OK. see also :func:`yml_load` and :func:`yml_dump` :param args: [stream] for load or [cnf, stream] for dump :param options: keyword args may contain "ac_safe" to load/dump safely ""...	[ "def", "yml_fnc", "(", "fname", ",", "", "args", ",", "", "*", "options", ")", ":", "options", "=", "common", ".", "filter_from_options", "(", "\"ac_dict\"", ",", "options", ")", "if", "\"ac_safe\"", "in", "options", ":", "options", "[", "\"typ\"", "]"...	36.238095	20.047619
def find_release(package, releases, dependencies=None): """Return the best release.""" dependencies = dependencies if dependencies is not None else {} for release in releases: url = release['url'] old_priority = dependencies.get(package, {}).get('priority', 0) for suffix, priority i...	[ "def", "find_release", "(", "package", ",", "releases", ",", "dependencies", "=", "None", ")", ":", "dependencies", "=", "dependencies", "if", "dependencies", "is", "not", "None", "else", "{", "}", "for", "release", "in", "releases", ":", "url", "=", "rele...	38.421053	13.473684
def _prepare_io_handler(self, handler): """Call the `interfaces.IOHandler.prepare` method and remove the handler from unprepared handler list when done. """ logger.debug(" preparing handler: {0!r}".format(handler)) self._unprepared_pending.discard(handler) ret = handler.p...	[ "def", "_prepare_io_handler", "(", "self", ",", "handler", ")", ":", "logger", ".", "debug", "(", "\" preparing handler: {0!r}\"", ".", "format", "(", "handler", ")", ")", "self", ".", "_unprepared_pending", ".", "discard", "(", "handler", ")", "ret", "=", "...	44.517241	13.827586
def videoWrite(path, imgs, levels=None, shape=None, frames=15, annotate_names=None, lut=None, updateFn=None): ''' TODO ''' frames = int(frames) if annotate_names is not None: assert len(annotate_names) == len(imgs) if levels is None: if i...	[ "def", "videoWrite", "(", "path", ",", "imgs", ",", "levels", "=", "None", ",", "shape", "=", "None", ",", "frames", "=", "15", ",", "annotate_names", "=", "None", ",", "lut", "=", "None", ",", "updateFn", "=", "None", ")", ":", "frames", "=", "int...	29.691176	18.191176
def derive(self, peerkey, **kwargs): """ Derives shared key (DH,ECDH,VKO 34.10). Requires private key available @param peerkey - other key (may be public only) Keyword parameters are algorithm-specific """ if not self.cansign: raise ValueError("No pr...	[ "def", "derive", "(", "self", ",", "peerkey", ",", "", "", "kwargs", ")", ":", "if", "not", "self", ".", "cansign", ":", "raise", "ValueError", "(", "\"No private key available\"", ")", "ctx", "=", "libcrypto", ".", "EVP_PKEY_CTX_new", "(", "self", ".", ...	43.5	16.777778
def recv_loop(stream): """Yield Erlang terms from an input stream.""" message = recv(stream) while message: yield message message = recv(stream)	[ "def", "recv_loop", "(", "stream", ")", ":", "message", "=", "recv", "(", "stream", ")", "while", "message", ":", "yield", "message", "message", "=", "recv", "(", "stream", ")" ]	27.833333	13.833333
def log_all(self, file): """Log all data received from RFLink to file.""" global rflink_log if file == None: rflink_log = None else: log.debug('logging to: %s', file) rflink_log = open(file, 'a')	[ "def", "log_all", "(", "self", ",", "file", ")", ":", "global", "rflink_log", "if", "file", "==", "None", ":", "rflink_log", "=", "None", "else", ":", "log", ".", "debug", "(", "'logging to: %s'", ",", "file", ")", "rflink_log", "=", "open", "(", "file...	32	11.25
def parse(self, date, kwargs): ''' :param kwargs: any kwargs accepted by dateutil.parse function. ''' qualifiers = [] if dateutil_parser is None: return None date = orig_date = date.strip() # various normalizations # TODO: call .lower() fi...	[ "def", "parse", "(", "self", ",", "date", ",", "", "", "kwargs", ")", ":", "qualifiers", "=", "[", "]", "if", "dateutil_parser", "is", "None", ":", "return", "None", "date", "=", "orig_date", "=", "date", ".", "strip", "(", ")", "# various normalizat...	34.876543	17.518519
def _add_to_conf(self, new_conf): """Add new configuration to self.conf. Adds configuration parameters in new_con to self.conf. If they already existed in conf, overwrite them. :param new_conf: new configuration, to add """ for section in new_conf: if secti...	[ "def", "_add_to_conf", "(", "self", ",", "new_conf", ")", ":", "for", "section", "in", "new_conf", ":", "if", "section", "not", "in", "self", ".", "conf", ":", "self", ".", "conf", "[", "section", "]", "=", "new_conf", "[", "section", "]", "else", ":...	34.666667	17.266667
def allow_port(port, proto='tcp', direction='both'): ''' Like allow_ports, but it will append to the existing entry instead of replacing it. Takes a single port instead of a list of ports. CLI Example: .. code-block:: bash salt '*' csf.allow_port 22 proto='tcp' direction='in' ''' ...	[ "def", "allow_port", "(", "port", ",", "proto", "=", "'tcp'", ",", "direction", "=", "'both'", ")", ":", "ports", "=", "get_ports", "(", "proto", "=", "proto", ",", "direction", "=", "direction", ")", "direction", "=", "direction", ".", "upper", "(", "...	29.956522	20.130435
def plot_roc(y_true, y_probas, title='ROC Curves', plot_micro=True, plot_macro=True, classes_to_plot=None, ax=None, figsize=None, cmap='nipy_spectral', title_fontsize="large", text_fontsize="medium"): """Generates the ROC curves from labels and predicted scor...	[ "def", "plot_roc", "(", "y_true", ",", "y_probas", ",", "title", "=", "'ROC Curves'", ",", "plot_micro", "=", "True", ",", "plot_macro", "=", "True", ",", "classes_to_plot", "=", "None", ",", "ax", "=", "None", ",", "figsize", "=", "None", ",", "cmap", ...	38.692308	23.069231
def __compose(self): """ Compose the message, pulling together body, attachments etc """ msg = MIMEMultipart() msg['Subject'] = self.config['shutit.core.alerting.emailer.subject'] msg['To'] = self.config['shutit.core.alerting.emailer.mailto'] msg['From'] = self.config['shutit.core.alerting.emailer....	[ "def", "__compose", "(", "self", ")", ":", "msg", "=", "MIMEMultipart", "(", ")", "msg", "[", "'Subject'", "]", "=", "self", ".", "config", "[", "'shutit.core.alerting.emailer.subject'", "]", "msg", "[", "'To'", "]", "=", "self", ".", "config", "[", "'sh...	45.421053	21.526316
def to_dataframe(self, dtypes=None): """Create a :class:`pandas.DataFrame` of all rows in the stream. This method requires the pandas libary to create a data frame and the fastavro library to parse row blocks. .. warning:: DATETIME columns are not supported. They are curren...	[ "def", "to_dataframe", "(", "self", ",", "dtypes", "=", "None", ")", ":", "if", "pandas", "is", "None", ":", "raise", "ImportError", "(", "_PANDAS_REQUIRED", ")", "frames", "=", "[", "]", "for", "page", "in", "self", ".", "pages", ":", "frames", ".", ...	35.3	21.466667
def create_articles(self, project, articleset, json_data=None, **options): """ Create one or more articles in the set. Provide the needed arguments using the json_data or with key-value pairs @param json_data: A dictionary or list of dictionaries. Each dict can ...	[ "def", "create_articles", "(", "self", ",", "project", ",", "articleset", ",", "json_data", "=", "None", ",", "", "", "options", ")", ":", "url", "=", "URL", ".", "article", ".", "format", "(", "", "", "locals", "(", ")", ")", "# TODO duplicated fr...	50.894737	19
def t_istringapostrophe_css_string(self, t): r'[^\'@]+' t.lexer.lineno += t.value.count('\n') return t	[ "def", "t_istringapostrophe_css_string", "(", "self", ",", "t", ")", ":", "t", ".", "lexer", ".", "lineno", "+=", "t", ".", "value", ".", "count", "(", "'\\n'", ")", "return", "t" ]	30.75	13.75
def find(self, name, required): """ Finds all matching dependencies by their name. :param name: the dependency name to locate. :param required: true to raise an exception when no dependencies are found. :return: a list of found dependencies """ if name == None:...	[ "def", "find", "(", "self", ",", "name", ",", "required", ")", ":", "if", "name", "==", "None", ":", "raise", "Exception", "(", "\"Name cannot be null\"", ")", "locator", "=", "self", ".", "_locate", "(", "name", ")", "if", "locator", "==", "None", ":"...	29.65	18.45
def download_extract(url): """download and extract file.""" logger.info("Downloading %s", url) request = urllib2.Request(url) request.add_header('User-Agent', 'caelum/0.1 +https://github.com/nrcharles/caelum') opener = urllib2.build_opener() with tempfile.TemporaryFile(suf...	[ "def", "download_extract", "(", "url", ")", ":", "logger", ".", "info", "(", "\"Downloading %s\"", ",", "url", ")", "request", "=", "urllib2", ".", "Request", "(", "url", ")", "request", ".", "add_header", "(", "'User-Agent'", ",", "'caelum/0.1 +https://github...	46.333333	14.466667
def _reldiff(a, b): """ Computes the relative difference of two floating-point numbers rel = abs(a-b)/min(abs(a), abs(b)) If a == 0 and b == 0, then 0.0 is returned Otherwise if a or b is 0.0, inf is returned. """ a = float(a) b = float(b) aa = abs(a) ba = abs(b) if a == ...	[ "def", "_reldiff", "(", "a", ",", "b", ")", ":", "a", "=", "float", "(", "a", ")", "b", "=", "float", "(", "b", ")", "aa", "=", "abs", "(", "a", ")", "ba", "=", "abs", "(", "b", ")", "if", "a", "==", "0.0", "and", "b", "==", "0.0", ":",...	20.47619	20.190476
def turn_right(self, angle_degrees, rate=RATE): """ Turn to the right, staying on the spot :param angle_degrees: How far to turn (degrees) :param rate: The trurning speed (degrees/second) :return: """ flight_time = angle_degrees / rate self.start_turn_ri...	[ "def", "turn_right", "(", "self", ",", "angle_degrees", ",", "rate", "=", "RATE", ")", ":", "flight_time", "=", "angle_degrees", "/", "rate", "self", ".", "start_turn_right", "(", "rate", ")", "time", ".", "sleep", "(", "flight_time", ")", "self", ".", "...	28.384615	14.230769
def api_call(self, opts, args=None, body=None, kwargs): """Setup the request""" if args: path = opts['name'] % args else: path = opts['name'] path = '/api/v1%s' % path return self._request( opts['method'], path=path, payload=body, kwargs)	[ "def", "api_call", "(", "self", ",", "opts", ",", "args", "=", "None", ",", "body", "=", "None", ",", "", "", "kwargs", ")", ":", "if", "args", ":", "path", "=", "opts", "[", "'name'", "]", "%", "args", "else", ":", "path", "=", "opts", "[", ...	34.444444	13.222222
def stop_receive(self, fd): """ Stop yielding readability events for `fd`. Redundant calls to :meth:`stop_receive` are silently ignored, this may change in future. """ self._rfds.pop(fd, None) self._update(fd)	[ "def", "stop_receive", "(", "self", ",", "fd", ")", ":", "self", ".", "_rfds", ".", "pop", "(", "fd", ",", "None", ")", "self", ".", "_update", "(", "fd", ")" ]	28.666667	15.555556
def cythonize(args, kwargs): ''' dirty hack, only import cythonize at the time you use it. if you don't write Cython extension, you won't fail even if you don't install Cython. ''' global cythonize from Cython.Build import cythonize return cythonize(args, **kwargs)	[ "def", "cythonize", "(", "", "args", ",", "", "", "kwargs", ")", ":", "global", "cythonize", "from", "Cython", ".", "Build", "import", "cythonize", "return", "cythonize", "(", "", "args", ",", "", "", "kwargs", ")" ]	29.3	17.3
def arrows(self): """Iterate over all my arrows.""" for o in self.arrow.values(): for arro in o.values(): yield arro	[ "def", "arrows", "(", "self", ")", ":", "for", "o", "in", "self", ".", "arrow", ".", "values", "(", ")", ":", "for", "arro", "in", "o", ".", "values", "(", ")", ":", "yield", "arro" ]	31.2	9
def is_dir(self, follow_symlinks=True): """ Return True if this entry is a directory or a symbolic link pointing to a directory; return False if the entry is or points to any other kind of file, or if it doesn’t exist anymore. The result is cached on the os.DirEntry object. ...	[ "def", "is_dir", "(", "self", ",", "follow_symlinks", "=", "True", ")", ":", "try", ":", "return", "(", "self", ".", "_system", ".", "isdir", "(", "path", "=", "self", ".", "_path", ",", "client_kwargs", "=", "self", ".", "_client_kwargs", ",", "virtua...	34.857143	20.214286
def unprotect(self, kwargs): """Unprotect the branch. Args: kwargs: Extra options to send to the server (e.g. sudo) Raises: GitlabAuthenticationError: If authentication is not correct GitlabProtectError: If the branch could not be unprotected """...	[ "def", "unprotect", "(", "self", ",", "", "", "kwargs", ")", ":", "id", "=", "self", ".", "get_id", "(", ")", ".", "replace", "(", "'/'", ",", "'%2F'", ")", "path", "=", "'%s/%s/unprotect'", "%", "(", "self", ".", "manager", ".", "path", ",", "...	36.214286	19.142857
def sexagesimal(sexathang, latlon, form='DDD'): """ Arguments: sexathang: (float), -15.560615 (negative = South), -146.241122 (negative = West) # Apataki Carenage latlon: (str) 'lat' \| 'lon' form: (str), 'DDD'\|'DMM'\|'DMS', decimal Degrees, decimal Minutes, decimal Seconds Returns: ...	[ "def", "sexagesimal", "(", "sexathang", ",", "latlon", ",", "form", "=", "'DDD'", ")", ":", "cardinal", "=", "'O'", "if", "not", "isinstance", "(", "sexathang", ",", "float", ")", ":", "sexathang", "=", "'n/a'", "return", "sexathang", "if", "latlon", "==...	31.791667	21.291667
def avail_images(call=None): ''' Return available Packet os images. CLI Example: .. code-block:: bash salt-cloud --list-images packet-provider salt-cloud -f avail_images packet-provider ''' if call == 'action': raise SaltCloudException( 'The avail_images fu...	[ "def", "avail_images", "(", "call", "=", "None", ")", ":", "if", "call", "==", "'action'", ":", "raise", "SaltCloudException", "(", "'The avail_images function must be called with -f or --function.'", ")", "ret", "=", "{", "}", "vm_", "=", "get_configured_provider", ...	21.814815	24.851852
def read_from_file(filename): """ Arguments: \| ``filename`` -- the filename of the input file Use as follows:: >>> if = CP2KInputFile.read_from_file("somefile.inp") >>> for section in if: ... print section.name """ ...	[ "def", "read_from_file", "(", "filename", ")", ":", "with", "open", "(", "filename", ")", "as", "f", ":", "result", "=", "CP2KInputFile", "(", ")", "try", ":", "while", "True", ":", "result", ".", "load_children", "(", "f", ")", "except", "EOFError", "...	27.631579	14.684211
def next_line(self): """Read the next line from the line generator and split it""" self.line = next(self.lines) # Will raise StopIteration when there are no more lines self.values = self.line.split()	[ "def", "next_line", "(", "self", ")", ":", "self", ".", "line", "=", "next", "(", "self", ".", "lines", ")", "# Will raise StopIteration when there are no more lines", "self", ".", "values", "=", "self", ".", "line", ".", "split", "(", ")" ]	55.25	18.5
def _set_labels(self, axes, dimensions, xlabel=None, ylabel=None, zlabel=None): """ Sets the labels of the axes using the supplied list of dimensions. Optionally explicit labels may be supplied to override the dimension label. """ xlabel, ylabel, zlabel = self._get_axis_l...	[ "def", "_set_labels", "(", "self", ",", "axes", ",", "dimensions", ",", "xlabel", "=", "None", ",", "ylabel", "=", "None", ",", "zlabel", "=", "None", ")", ":", "xlabel", ",", "ylabel", ",", "zlabel", "=", "self", ".", "_get_axis_labels", "(", "dimensi...	52.6	21.533333
def to_number(obj): ''' Cast an arbitrary object or sequence to a number type ''' if isinstance(obj, LiteralWrapper): val = obj.obj elif isinstance(obj, Iterable) and not isinstance(obj, str): val = next(obj, None) else: val = obj if val is None: #FIXME: Shoul...	[ "def", "to_number", "(", "obj", ")", ":", "if", "isinstance", "(", "obj", ",", "LiteralWrapper", ")", ":", "val", "=", "obj", ".", "obj", "elif", "isinstance", "(", "obj", ",", "Iterable", ")", "and", "not", "isinstance", "(", "obj", ",", "str", ")",...	29.428571	19.809524
def vm_get_network_by_name(vm, network_name): """ Try to find Network scanning all attached to VM networks :param vm: <vim.vm> :param network_name: <str> name of network :return: <vim.vm.Network or None> """ # return None for network in vm.network: ...	[ "def", "vm_get_network_by_name", "(", "vm", ",", "network_name", ")", ":", "# return None", "for", "network", "in", "vm", ".", "network", ":", "if", "hasattr", "(", "network", ",", "\"name\"", ")", "and", "network_name", "==", "network", ".", "name", ":", ...	35.5	11.833333
def union(self, a, b): """Merges the set that contains ``a`` with the set that contains ``b``. Parameters ---------- a, b : objects Two objects whose sets are to be merged. """ s1, s2 = self.find(a), self.find(b) if s1 != s2: r1, r2 = sel...	[ "def", "union", "(", "self", ",", "a", ",", "b", ")", ":", "s1", ",", "s2", "=", "self", ".", "find", "(", "a", ")", ",", "self", ".", "find", "(", "b", ")", "if", "s1", "!=", "s2", ":", "r1", ",", "r2", "=", "self", ".", "_rank", "[", ...	29.55	14.15
def interrupt_then_kill(self, delay=2.0): """Send INT, wait a delay and then send KILL.""" try: self.signal(SIGINT) except Exception: self.log.debug("interrupt failed") pass self.killer = ioloop.DelayedCallback(lambda : self.signal(SIGKILL), delay*100...	[ "def", "interrupt_then_kill", "(", "self", ",", "delay", "=", "2.0", ")", ":", "try", ":", "self", ".", "signal", "(", "SIGINT", ")", "except", "Exception", ":", "self", ".", "log", ".", "debug", "(", "\"interrupt failed\"", ")", "pass", "self", ".", "...	39.222222	17.222222
def resolve_response_data(head_key, data_key, data): """ Resolves the responses you get from billomat If you have done a get_one_element request then you will get a dictionary If you have done a get_all_elements request then you will get a list with all elements in it :param hea...	[ "def", "resolve_response_data", "(", "head_key", ",", "data_key", ",", "data", ")", ":", "new_data", "=", "[", "]", "if", "isinstance", "(", "data", ",", "list", ")", ":", "for", "data_row", "in", "data", ":", "if", "head_key", "in", "data_row", "and", ...	42.178571	17.678571
def get_anniversary_periods(start, finish, anniversary=1): """ Return a list of anniversaries periods between start and finish. """ import sys current = start periods = [] while current <= finish: (period_start, period_finish) = date_period(DATE_FREQUENCY_MONTHLY, anniversary, curre...	[ "def", "get_anniversary_periods", "(", "start", ",", "finish", ",", "anniversary", "=", "1", ")", ":", "import", "sys", "current", "=", "start", "periods", "=", "[", "]", "while", "current", "<=", "finish", ":", "(", "period_start", ",", "period_finish", "...	42	21.714286
def site_content(self, election_day): """ Site content represents content for the entire site on a given election day. """ from electionnight.models import PageType page_type = PageType.objects.get( model_type=ContentType.objects.get( app_labe...	[ "def", "site_content", "(", "self", ",", "election_day", ")", ":", "from", "electionnight", ".", "models", "import", "PageType", "page_type", "=", "PageType", ".", "objects", ".", "get", "(", "model_type", "=", "ContentType", ".", "objects", ".", "get", "(",...	34.578947	14.578947
def make_cutter(self): """ Makes a shape to be used as a negative; it can be cut away from other shapes to make a perfectly shaped pocket for this part. For example, for a countersunk screw with a neck, the following cutter would be generated. .. image:: /_static/img/fa...	[ "def", "make_cutter", "(", "self", ")", ":", "# head", "obj", "=", "self", ".", "head", ".", "make_cutter", "(", ")", "# neck", "if", "self", ".", "neck_length", ":", "# neck cut diameter (if thread is larger than the neck, thread must fit through)", "(", "inner_radiu...	36.242424	23.333333
def lotus_root_data(): """Tomographic X-ray data of a lotus root. Notes ----- See the article `Tomographic X-ray data of a lotus root filled with attenuating objects`_ for further information. See Also -------- lotus_root_geometry References ---------- .. _Tomographic X-ra...	[ "def", "lotus_root_data", "(", ")", ":", "# TODO: Store data in some ODL controlled url", "url", "=", "'http://www.fips.fi/dataset/CT_Lotus_v1/sinogram.mat'", "dct", "=", "get_data", "(", "'lotus_root.mat'", ",", "subset", "=", "DATA_SUBSET", ",", "url", "=", "url", ")", ...	27.807692	22.692308
def _normalizePoint(self, x, y): """Check if a point is in bounds and make minor adjustments. Respects Pythons negative indexes. -1 starts at the bottom right. Replaces the _drawable function """ # cast to int, always faster than type checking x = int(x) y = int...	[ "def", "_normalizePoint", "(", "self", ",", "x", ",", "y", ")", ":", "# cast to int, always faster than type checking", "x", "=", "int", "(", "x", ")", "y", "=", "int", "(", "y", ")", "assert", "(", "-", "self", ".", "width", "<=", "x", "<", "self", ...	35.6875	18.25
def parse_v3_unit_placement(placement_str): """Return a UnitPlacement for bundles version 3, given a placement string. See https://github.com/juju/charmstore/blob/v4/docs/bundles.md Raise a ValueError if the placement is not valid. """ placement = placement_str container = machine = service = u...	[ "def", "parse_v3_unit_placement", "(", "placement_str", ")", ":", "placement", "=", "placement_str", "container", "=", "machine", "=", "service", "=", "unit", "=", "''", "if", "':'", "in", "placement", ":", "try", ":", "container", ",", "placement", "=", "pl...	39.771429	14.828571
def update_contributions(sender, instance, action, model, pk_set, **kwargs): """Creates a contribution for each author added to an article. """ if action != 'pre_add': return else: for author in model.objects.filter(pk__in=pk_set): update_content_contributions(instance, autho...	[ "def", "update_contributions", "(", "sender", ",", "instance", ",", "action", ",", "model", ",", "pk_set", ",", "", "", "kwargs", ")", ":", "if", "action", "!=", "'pre_add'", ":", "return", "else", ":", "for", "author", "in", "model", ".", "objects", ...	39.375	17.75
def create_tarfile(self): """ Create a tar file with the contents of the current directory """ floyd_logger.info("Compressing data...") # Show progress bar (file_compressed/file_to_compress) self.__compression_bar = ProgressBar(expected_size=self.__files_to_compress, fill...	[ "def", "create_tarfile", "(", "self", ")", ":", "floyd_logger", ".", "info", "(", "\"Compressing data...\"", ")", "# Show progress bar (file_compressed/file_to_compress)", "self", ".", "__compression_bar", "=", "ProgressBar", "(", "expected_size", "=", "self", ".", "__f...	52.327586	23.672414
def example_exc_handler(tries_remaining, exception, delay): """Example exception handler; prints a warning to stderr. tries_remaining: The number of tries remaining. exception: The exception instance which was raised. """ print >> sys.stderr, "Caught '%s', %d tries remaining, sleeping for %s second...	[ "def", "example_exc_handler", "(", "tries_remaining", ",", "exception", ",", "delay", ")", ":", "print", ">>", "sys", ".", "stderr", ",", "\"Caught '%s', %d tries remaining, sleeping for %s seconds\"", "%", "(", "exception", ",", "tries_remaining", ",", "delay", ")" ]	45.25	16.75
def writeTicks(self, ticks): ''' read quotes ''' tName = self.tableName(HBaseDAM.TICK) if tName not in self.__hbase.getTableNames(): self.__hbase.createTable(tName, [ColumnDescriptor(name=HBaseDAM.TICK, maxVersions=5)]) for tick in ticks: self.__hbase.upda...	[ "def", "writeTicks", "(", "self", ",", "ticks", ")", ":", "tName", "=", "self", ".", "tableName", "(", "HBaseDAM", ".", "TICK", ")", "if", "tName", "not", "in", "self", ".", "__hbase", ".", "getTableNames", "(", ")", ":", "self", ".", "__hbase", ".",...	53.272727	26.909091
def process_star(filename, output, , extension, star_name, period, shift, parameters, period_label, shift_label, *kwargs): """Processes a star's lightcurve, prints its coefficients, and saves its plotted lightcurve to a file. Returns the result of get_lightcurve. """ if star_name is N...	[ "def", "process_star", "(", "filename", ",", "output", ",", "", ",", "extension", ",", "star_name", ",", "period", ",", "shift", ",", "parameters", ",", "period_label", ",", "shift_label", ",", "", "*", "kwargs", ")", ":", "if", "star_name", "is", "Non...	37.352941	18.676471
def _progress(bytes_received, bytes_total, worker): """Return download progress.""" worker.sig_download_progress.emit( worker.url, worker.path, bytes_received, bytes_total)	[ "def", "_progress", "(", "bytes_received", ",", "bytes_total", ",", "worker", ")", ":", "worker", ".", "sig_download_progress", ".", "emit", "(", "worker", ".", "url", ",", "worker", ".", "path", ",", "bytes_received", ",", "bytes_total", ")" ]	49.25	9.5
def mro(bases): """Calculate the Method Resolution Order of bases using the C3 algorithm. Suppose you intended creating a class K with the given base classes. This function returns the MRO which K would have, excluding* K itself (since it doesn't yet exist), as if you had actually created the class. ...	[ "def", "mro", "(", "*", "bases", ")", ":", "seqs", "=", "[", "list", "(", "C", ".", "__mro__", ")", "for", "C", "in", "bases", "]", "+", "[", "list", "(", "bases", ")", "]", "res", "=", "[", "]", "while", "True", ":", "non_empty", "=", "list"...	38.285714	20.571429
def createFromURL(urlOfXMLDefinition): """Factory method to create a DeviceTR64 from an URL to the XML device definitions. :param str urlOfXMLDefinition: :return: the new object :rtype: Wifi """ url = urlparse(urlOfXMLDefinition) if not url.port: if ...	[ "def", "createFromURL", "(", "urlOfXMLDefinition", ")", ":", "url", "=", "urlparse", "(", "urlOfXMLDefinition", ")", "if", "not", "url", ".", "port", ":", "if", "url", ".", "scheme", ".", "lower", "(", ")", "==", "\"https\"", ":", "port", "=", "443", "...	27.722222	15.5
def parse(grid_str, mode=MODE_ZINC, charset='utf-8'): ''' Parse the given Zinc text and return the equivalent data. ''' # Decode incoming text (or python3 will whine!) if isinstance(grid_str, six.binary_type): grid_str = grid_str.decode(encoding=charset) # Split the separate grids up, t...	[ "def", "parse", "(", "grid_str", ",", "mode", "=", "MODE_ZINC", ",", "charset", "=", "'utf-8'", ")", ":", "# Decode incoming text (or python3 will whine!)", "if", "isinstance", "(", "grid_str", ",", "six", ".", "binary_type", ")", ":", "grid_str", "=", "grid_str...	37.5	19.25
def Enable(self, value): "enable or disable all top menus" for i in range(self.GetMenuCount()): self.EnableTop(i, value)	[ "def", "Enable", "(", "self", ",", "value", ")", ":", "for", "i", "in", "range", "(", "self", ".", "GetMenuCount", "(", ")", ")", ":", "self", ".", "EnableTop", "(", "i", ",", "value", ")" ]	37	6.5
def get_lines_data(self): """ Returns string:line_numbers list Since all strings are unique it is OK to get line numbers this way. Since same string can occur several times inside single .json file the values should be popped(FIFO) from the list :rtype: list """ ...	[ "def", "get_lines_data", "(", "self", ")", ":", "encoding", "=", "'utf-8'", "for", "token", "in", "tokenize", "(", "self", ".", "data", ".", "decode", "(", "encoding", ")", ")", ":", "if", "token", ".", "type", "==", "'operator'", ":", "if", "token", ...	41.7	20.2
def subsample(self, down_to=1, new_path=None): """Pick a number of sequences from the file pseudo-randomly.""" # Auto path # if new_path is None: subsampled = self.__class__(new_temp_path()) elif isinstance(new_path, FASTA): subsampled = new_path else: subsampled =...	[ "def", "subsample", "(", "self", ",", "down_to", "=", "1", ",", "new_path", "=", "None", ")", ":", "# Auto path #", "if", "new_path", "is", "None", ":", "subsampled", "=", "self", ".", "__class__", "(", "new_temp_path", "(", ")", ")", "elif", "isinstance...	43.105263	18.210526
def get_interpolated_fd_waveform(dtype=numpy.complex64, return_hc=True, params): """ Return a fourier domain waveform approximant, using interpolation """ def rulog2(val): return 2.0 numpy.ceil(numpy.log2(float(val))) orig_approx = params['approximant'] ...	[ "def", "get_interpolated_fd_waveform", "(", "dtype", "=", "numpy", ".", "complex64", ",", "return_hc", "=", "True", ",", "", "", "params", ")", ":", "def", "rulog2", "(", "val", ")", ":", "return", "2.0", "**", "numpy", ".", "ceil", "(", "numpy", "."...	34.47541	19.196721
def get_command_class(self, cmd): """ Returns command class from the registry for a given ``cmd``. :param cmd: command to run (key at the registry) """ try: cmdpath = self.registry[cmd] except KeyError: raise CommandError("No such command %r" % cm...	[ "def", "get_command_class", "(", "self", ",", "cmd", ")", ":", "try", ":", "cmdpath", "=", "self", ".", "registry", "[", "cmd", "]", "except", "KeyError", ":", "raise", "CommandError", "(", "\"No such command %r\"", "%", "cmd", ")", "if", "isinstance", "("...	30.866667	14.333333
def addresses_for_key(gpg, key): """ Takes a key and extracts the email addresses for it. """ fingerprint = key["fingerprint"] addresses = [] for key in gpg.list_keys(): if key["fingerprint"] == fingerprint: addresses.extend([address.split("<")[-1].strip(">") ...	[ "def", "addresses_for_key", "(", "gpg", ",", "key", ")", ":", "fingerprint", "=", "key", "[", "\"fingerprint\"", "]", "addresses", "=", "[", "]", "for", "key", "in", "gpg", ".", "list_keys", "(", ")", ":", "if", "key", "[", "\"fingerprint\"", "]", "=="...	35.818182	12.363636
def cast_bytes(s, encoding=None): """Source: https://github.com/ipython/ipython_genutils""" if not isinstance(s, bytes): return encode(s, encoding) return s	[ "def", "cast_bytes", "(", "s", ",", "encoding", "=", "None", ")", ":", "if", "not", "isinstance", "(", "s", ",", "bytes", ")", ":", "return", "encode", "(", "s", ",", "encoding", ")", "return", "s" ]	34.4	9.8
def _dataset_merge_filestore_resource(self, resource, updated_resource, filestore_resources, ignore_fields): # type: (hdx.data.Resource, hdx.data.Resource, List[hdx.data.Resource], List[str]) -> None """Helper method to merge updated resource from dataset into HDX resource read from HDX including filest...	[ "def", "_dataset_merge_filestore_resource", "(", "self", ",", "resource", ",", "updated_resource", ",", "filestore_resources", ",", "ignore_fields", ")", ":", "# type: (hdx.data.Resource, hdx.data.Resource, List[hdx.data.Resource], List[str]) -> None", "if", "updated_resource", "."...	55.7	28.85
def _get_cores_memory(data, downscale=2): """Retrieve cores and memory, using samtools as baseline. For memory, scaling down because we share with alignment and de-duplication. """ resources = config_utils.get_resources("samtools", data["config"]) num_cores = data["config"]["algorithm"].get("num_co...	[ "def", "_get_cores_memory", "(", "data", ",", "downscale", "=", "2", ")", ":", "resources", "=", "config_utils", ".", "get_resources", "(", "\"samtools\"", ",", "data", "[", "\"config\"", "]", ")", "num_cores", "=", "data", "[", "\"config\"", "]", "[", "\"...	49.3	20.7
def _parse(batch_cmd): """ :rtype: (sh_cmd, batch_to_file_s, batch_from_file) :returns: parsed result like below: .. code-block:: python # when parsing 'diff IN_BATCH0 IN_BATCH1 > OUT_BATCH' ( 'diff /tmp/relshell-AbCDeF /tmp/relshell-uVwXyz', ...	[ "def", "_parse", "(", "batch_cmd", ")", ":", "cmd_array", "=", "shlex", ".", "split", "(", "batch_cmd", ")", "(", "cmd_array", ",", "batch_to_file_s", ")", "=", "BatchCommand", ".", "_parse_in_batches", "(", "cmd_array", ")", "(", "cmd_array", ",", "batch_fr...	41.777778	24.666667
def parse_content(self, content): """ Use all the defined scanners to search the log file, setting the properties defined in the scanner. """ self.lines = content for scanner in self.scanners: scanner(self)	[ "def", "parse_content", "(", "self", ",", "content", ")", ":", "self", ".", "lines", "=", "content", "for", "scanner", "in", "self", ".", "scanners", ":", "scanner", "(", "self", ")" ]	32.375	8.875
def scatter(self, x, y, **kwargs): """Plot a scatter chart using metadata columns see pyam.plotting.scatter() for all available options """ variables = self.data['variable'].unique() xisvar = x in variables yisvar = y in variables if not xisvar and not yisvar: ...	[ "def", "scatter", "(", "self", ",", "x", ",", "y", ",", "", "", "kwargs", ")", ":", "variables", "=", "self", ".", "data", "[", "'variable'", "]", ".", "unique", "(", ")", "xisvar", "=", "x", "in", "variables", "yisvar", "=", "y", "in", "variab...	36.414634	14.146341
def write(self)->None: "Writes model gradient statistics to Tensorboard." if len(self.gradients) == 0: return norms = [x.data.norm() for x in self.gradients] self._write_avg_norm(norms=norms) self._write_median_norm(norms=norms) self._write_max_norm(norms=norms) s...	[ "def", "write", "(", "self", ")", "->", "None", ":", "if", "len", "(", "self", ".", "gradients", ")", "==", "0", ":", "return", "norms", "=", "[", "x", ".", "data", ".", "norm", "(", ")", "for", "x", "in", "self", ".", "gradients", "]", "self",...	39.615385	7
def get_all_supported_exts_for_type(self, type_to_match: Type[Any], strict: bool) -> Set[str]: """ Utility method to return the set of all supported file extensions that may be converted to objects of the given type. type=JOKER is a joker that means all types :param type_to_match: ...	[ "def", "get_all_supported_exts_for_type", "(", "self", ",", "type_to_match", ":", "Type", "[", "Any", "]", ",", "strict", ":", "bool", ")", "->", "Set", "[", "str", "]", ":", "matching", "=", "self", ".", "find_all_matching_parsers", "(", "desired_type", "="...	48.833333	30.5
def lowpass_fir(self, frequency, order, beta=5.0, remove_corrupted=True): """ Lowpass filter the time series using an FIR filtered generated from the ideal response passed through a kaiser window (beta = 5.0) Parameters ---------- Time Series: TimeSeries The time ser...	[ "def", "lowpass_fir", "(", "self", ",", "frequency", ",", "order", ",", "beta", "=", "5.0", ",", "remove_corrupted", "=", "True", ")", ":", "from", "pycbc", ".", "filter", "import", "lowpass_fir", "ts", "=", "lowpass_fir", "(", "self", ",", "frequency", ...	44.041667	19.208333
def _set_level_1(self, v, load=False): """ Setter method for level_1, mapped from YANG variable /routing_system/router/isis/router_isis_cmds_holder/address_family/ipv6/af_ipv6_unicast/af_ipv6_attributes/af_common_attributes/redistribute/isis/level_1 (container) If this variable is read-only (config: false) ...	[ "def", "_set_level_1", "(", "self", ",", "v", ",", "load", "=", "False", ")", ":", "if", "hasattr", "(", "v", ",", "\"_utype\"", ")", ":", "v", "=", "v", ".", "_utype", "(", "v", ")", "try", ":", "t", "=", "YANGDynClass", "(", "v", ",", "base",...	75.181818	37.772727
def listsdm(sdm, file=None): """Generate a standard "listsdm" listing of(A)SDM dataset contents. sdm (str) The path to the (A)SDM dataset to parse file (stream-like object, such as an opened file) Where to print the human-readable listing. If unspecified, results go to :data:`sys.stdout`....	[ "def", "listsdm", "(", "sdm", ",", "file", "=", "None", ")", ":", "from", "xml", ".", "dom", "import", "minidom", "import", "string", "def", "printf", "(", "fmt", ",", "*", "args", ")", ":", "if", "len", "(", "args", ")", ":", "s", "=", "fmt", ...	39.333333	20.324201
def get_choices(cli, prog_name, args, incomplete): """ :param cli: command definition :param prog_name: the program that is running :param args: full list of args :param incomplete: the incomplete text to autocomplete :return: all the possible completions for the incomplete """ all_args ...	[ "def", "get_choices", "(", "cli", ",", "prog_name", ",", "args", ",", "incomplete", ")", ":", "all_args", "=", "copy", ".", "deepcopy", "(", "args", ")", "ctx", "=", "resolve_ctx", "(", "cli", ",", "prog_name", ",", "args", ")", "if", "ctx", "is", "N...	43.522727	19.659091
def query_by_attribute(self, key, value, **kwargs): """ Get Build Records by attribute. This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please define a `callback` function to be invoked when receiving the response. >...	[ "def", "query_by_attribute", "(", "self", ",", "key", ",", "value", ",", "", "", "kwargs", ")", ":", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'callback'", ")", ":", "return", "self", ".", "query_by_...	41.733333	15.6
def verify_password(password, password_hash): """Returns ``True`` if the password matches the supplied hash. :param password: A plaintext password to verify :param password_hash: The expected hash value of the password (usually from your database) """ if use_double_hash(pa...	[ "def", "verify_password", "(", "password", ",", "password_hash", ")", ":", "if", "use_double_hash", "(", "password_hash", ")", ":", "password", "=", "get_hmac", "(", "password", ")", "return", "_pwd_context", ".", "verify", "(", "password", ",", "password_hash",...	38	14.090909
def work_in(dirname=None): """Context manager version of os.chdir. When exited, returns to the working directory prior to entering. """ curdir = os.getcwd() try: if dirname is not None: os.chdir(dirname) yield finally: os.chdir(curdir)	[ "def", "work_in", "(", "dirname", "=", "None", ")", ":", "curdir", "=", "os", ".", "getcwd", "(", ")", "try", ":", "if", "dirname", "is", "not", "None", ":", "os", ".", "chdir", "(", "dirname", ")", "yield", "finally", ":", "os", ".", "chdir", "(...	23.75	18.416667
def save_named_query(self, alias, querystring, afterwards=None): """ add an alias for a query string. These are stored in the notmuch database and can be used as part of more complex queries using the syntax "query:alias". See :manpage:`notmuch-search-terms(7)` for more info. ...	[ "def", "save_named_query", "(", "self", ",", "alias", ",", "querystring", ",", "afterwards", "=", "None", ")", ":", "if", "self", ".", "ro", ":", "raise", "DatabaseROError", "(", ")", "self", ".", "writequeue", ".", "append", "(", "(", "'setconfig'", ","...	40	17.157895
def make_random_models_table(n_sources, param_ranges, random_state=None): """ Make a `~astropy.table.Table` containing randomly generated parameters for an Astropy model to simulate a set of sources. Each row of the table corresponds to a source whose parameters are defined by the column names. Th...	[ "def", "make_random_models_table", "(", "n_sources", ",", "param_ranges", ",", "random_state", "=", "None", ")", ":", "prng", "=", "check_random_state", "(", "random_state", ")", "sources", "=", "Table", "(", ")", "for", "param_name", ",", "(", "lower", ",", ...	39.911392	23.860759
def run(self): """ Called by the threading system """ try: self._connect() self._register() while True: try: body = self.command_queue.get(block=True, timeout=1 * SECOND) except queue.Empty: ...	[ "def", "run", "(", "self", ")", ":", "try", ":", "self", ".", "_connect", "(", ")", "self", ".", "_register", "(", ")", "while", "True", ":", "try", ":", "body", "=", "self", ".", "command_queue", ".", "get", "(", "block", "=", "True", ",", "time...	36.105263	16.684211
def get(self, name): """Returns a Notification by name. """ if not self.loaded: raise RegistryNotLoaded(self) if not self._registry.get(name): raise NotificationNotRegistered( f"Notification not registered. Got '{name}'." ) retu...	[ "def", "get", "(", "self", ",", "name", ")", ":", "if", "not", "self", ".", "loaded", ":", "raise", "RegistryNotLoaded", "(", "self", ")", "if", "not", "self", ".", "_registry", ".", "get", "(", "name", ")", ":", "raise", "NotificationNotRegistered", "...	33.8	8.7
def get_inactive() -> List[str]: """Return the list of inactive subarrays.""" inactive = [] for i in range(__num_subarrays__): key = Subarray.get_key(i) if DB.get_hash_value(key, 'active').upper() == 'FALSE': inactive.append(Subarray.get_id(i)) ret...	[ "def", "get_inactive", "(", ")", "->", "List", "[", "str", "]", ":", "inactive", "=", "[", "]", "for", "i", "in", "range", "(", "__num_subarrays__", ")", ":", "key", "=", "Subarray", ".", "get_key", "(", "i", ")", "if", "DB", ".", "get_hash_value", ...	40.625	10.875
def _zeo_key(self, key, new_type=OOBTree): """ Get key from the :attr:`zeo` database root. If the key doesn't exist, create it by calling `new_type` argument. Args: key (str): Key in the root dict. new_type (func/obj): Object/function returning the new instance. ...	[ "def", "_zeo_key", "(", "self", ",", "key", ",", "new_type", "=", "OOBTree", ")", ":", "zeo_key", "=", "self", ".", "zeo", ".", "get", "(", "key", ",", "None", ")", "if", "zeo_key", "is", "None", ":", "zeo_key", "=", "new_type", "(", ")", "self", ...	28.526316	18.421053
def parse(cls, fptr, offset, length): """Parse JPX free box. Parameters ---------- f : file Open file object. offset : int Start position of box in bytes. length : int Length of the box in bytes. Returns ------- ...	[ "def", "parse", "(", "cls", ",", "fptr", ",", "offset", ",", "length", ")", ":", "# Must seek to end of box.", "nbytes", "=", "offset", "+", "length", "-", "fptr", ".", "tell", "(", ")", "fptr", ".", "read", "(", "nbytes", ")", "return", "cls", "(", ...	24.952381	15.285714
def set_tmp_folder(): """ Create a temporary folder using the current time in which the zip can be extracted and which should be destroyed afterward. """ output = "%s" % datetime.datetime.now() for char in [' ', ':', '.', '-']: output = output.replace(char, '') output.strip() tmp_fol...	[ "def", "set_tmp_folder", "(", ")", ":", "output", "=", "\"%s\"", "%", "datetime", ".", "datetime", ".", "now", "(", ")", "for", "char", "in", "[", "' '", ",", "':'", ",", "'.'", ",", "'-'", "]", ":", "output", "=", "output", ".", "replace", "(", ...	38.2	11.6
def from_where(cls, where): """ Factory method for creating the top-level expression """ if where.conjunction: return Conjunction.from_clause(where) else: return cls.from_clause(where[0])	[ "def", "from_where", "(", "cls", ",", "where", ")", ":", "if", "where", ".", "conjunction", ":", "return", "Conjunction", ".", "from_clause", "(", "where", ")", "else", ":", "return", "cls", ".", "from_clause", "(", "where", "[", "0", "]", ")" ]	38.333333	10.666667
def distribution_present(name, region=None, key=None, keyid=None, profile=None, **kwargs): ''' Ensure the given CloudFront distribution exists in the described state. The implementation of this function, and all those following, is orthagonal to that of :py:mod:`boto_cloudfront.present <salt.states...	[ "def", "distribution_present", "(", "name", ",", "region", "=", "None", ",", "key", "=", "None", ",", "keyid", "=", "None", ",", "profile", "=", "None", ",", "", "", "kwargs", ")", ":", "ret", "=", "{", "'name'", ":", "name", ",", "'result'", ":"...	46.249211	23.283912
def fulfill(self, method, args, kwargs): """ Fulfill an HTTP request to Keen's API. """ return getattr(self.session, method)(args, **kwargs)	[ "def", "fulfill", "(", "self", ",", "method", ",", "", "args", ",", "", "", "kwargs", ")", ":", "return", "getattr", "(", "self", ".", "session", ",", "method", ")", "(", "", "args", ",", "", "", "kwargs", ")" ]	31.6	20.8
def generate_options(): '''Helper coroutine to identify short options that haven't been used yet. Yields lists of short option (if available) and long option for the given name, keeping track of which short options have been previously used. If you aren't familiar with coroutines, use similar to a ...	[ "def", "generate_options", "(", ")", ":", "used_short_options", "=", "set", "(", ")", "param_name", "=", "yield", "while", "True", ":", "names", "=", "[", "'--'", "+", "param_name", "]", "for", "letter", "in", "param_name", ":", "if", "letter", "not", "i...	36.952381	19.428571
def routedResource(f, routerAttribute='router'): """ Decorate a router-producing callable to instead produce a resource. This simply produces a new callable that invokes the original callable, and calls ``resource`` on the ``routerAttribute``. If the router producer has multiple routers the attrib...	[ "def", "routedResource", "(", "f", ",", "routerAttribute", "=", "'router'", ")", ":", "return", "wraps", "(", "f", ")", "(", "lambda", "", "a", ",", "", "", "kw", ":", "getattr", "(", "f", "(", "", "a", ",", "", "", "kw", ")", ",", "route...	32.8	21.35
def smartypants(text): """ Transforms sequences of characters into HTML entities. =================================== ===================== ========= Markdown HTML Result =================================== ===================== ========= ``'s``...	[ "def", "smartypants", "(", "text", ")", ":", "byte_str", "=", "text", ".", "encode", "(", "'utf-8'", ")", "ob", "=", "lib", ".", "hoedown_buffer_new", "(", "OUNIT", ")", "lib", ".", "hoedown_html_smartypants", "(", "ob", ",", "byte_str", ",", "len", "(",...	47.896552	22.655172
def load_tool(result): """ Load the module with the tool-specific code. """ def load_tool_module(tool_module): if not tool_module: logging.warning('Cannot extract values from log files for benchmark results %s ' '(missing attribute "toolmodule" on tag "res...	[ "def", "load_tool", "(", "result", ")", ":", "def", "load_tool_module", "(", "tool_module", ")", ":", "if", "not", "tool_module", ":", "logging", ".", "warning", "(", "'Cannot extract values from log files for benchmark results %s '", "'(missing attribute \"toolmodule\" on ...	40.774194	19.354839
def _hash(expr, func=None): """ Calculate the hash value. :param expr: :param func: hash function :return: """ if func is None: func = lambda x: hash(x) return _map(expr, func=func, rtype=types.int64)	[ "def", "_hash", "(", "expr", ",", "func", "=", "None", ")", ":", "if", "func", "is", "None", ":", "func", "=", "lambda", "x", ":", "hash", "(", "x", ")", "return", "_map", "(", "expr", ",", "func", "=", "func", ",", "rtype", "=", "types", ".", ...	19.25	17.083333

def get(self, name: str, sig: Tuple) -> Optional[object]: """ Return the object representing name if it is cached :param name: name of object :param sig: unique signature of object :return: object if exists and signature matches """ if name not in self._cache: ...

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35.933333

9.4

def compute_wcs(key, challenge): """ Compute an WAMP-CRA authentication signature from an authentication challenge and a (derived) key. :param key: The key derived (via PBKDF2) from the secret. :type key: str/bytes :param challenge: The authentication challenge to sign. :type challenge: str...

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32.588235

14.705882

def set_dict_value(dictionary, keys, value): """ Set a value in a (nested) dictionary by defining a list of keys. .. note:: Side-effects This function does not make a copy of dictionary, but directly edits it. Parameters ---------- dictionary : dict keys : List[...

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23.533333

21.533333

def tag_structure(tag, site): """ A tag structure. """ return {'tag_id': tag.pk, 'name': tag.name, 'count': tag.count, 'slug': tag.name, 'html_url': '%s://%s%s' % ( PROTOCOL, site.domain, reverse('zinnia:tag_detail', args=[t...

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31.333333

10

def from_labeled_point(rdd, categorical=False, nb_classes=None): """Convert a LabeledPoint RDD back to a pair of numpy arrays :param rdd: LabeledPoint RDD :param categorical: boolean, if labels should be one-hot encode when returned :param nb_classes: optional int, indicating the number of class labels...

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42.210526

17.210526

def get_config_h_filename(): """Return the path of pyconfig.h.""" if _PYTHON_BUILD: if os.name == "nt": inc_dir = os.path.join(_PROJECT_BASE, "PC") else: inc_dir = _PROJECT_BASE else: inc_dir = get_path('platinclude') return os.path.join(inc_dir, 'pyconfig...

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31.5

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def save(self): """ Apply a series of actions from a set of (action, arg) tuples, probably as parsed from a URL. Each action is a code into PROCESSORS. Then save the mogrified image. """ from settings import PROCESSORS from .filesystem import makedirs if...

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33.64

15.68

def plot_ebands(self, **kwargs): """ Plot the band structure. kwargs are passed to the plot method of :class:`ElectronBands`. Returns: `matplotlib` figure """ with self.nscf_task.open_gsr() as gsr: return gsr.ebands.plot(**kwargs)

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31.888889

16.333333

def is_upstart(conn): """ This helper should only used as a fallback (last resort) as it is not guaranteed that it will be absolutely correct. """ # it may be possible that we may be systemd and the caller never checked # before so lets do that if is_systemd(conn): return False ...

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31.857143

19.5

def sigma(htilde, psd = None, low_frequency_cutoff=None, high_frequency_cutoff=None): """ Return the sigma of the waveform. See sigmasq for more details. Parameters ---------- htilde : TimeSeries or FrequencySeries The input vector containing a waveform. psd : {None, FrequencySeries...

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36.05

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def replace_wrep(t:str) -> str: "Replace word repetitions in `t`." def _replace_wrep(m:Collection[str]) -> str: c,cc = m.groups() return f' {TK_WREP} {len(cc.split())+1} {c} ' re_wrep = re.compile(r'(\b\w+\W+)(\1{3,})') return re_wrep.sub(_replace_wrep, t)

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40.285714

7.714286

def upload(self, params={}): """start uploading the file until upload is complete or error. This is the main method to used, If you do not care about state of process. Args: params: a dict object describe video info, eg title, tags, description, ...

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34.935484

13.612903

def get_stp_mst_detail_output_msti_port_if_state(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") get_stp_mst_detail = ET.Element("get_stp_mst_detail") config = get_stp_mst_detail output = ET.SubElement(get_stp_mst_detail, "output") msti =...

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42.8125

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def yml_fnc(fname, *args, **options): """ :param fname: "load" or "dump", not checked but it should be OK. see also :func:`yml_load` and :func:`yml_dump` :param args: [stream] for load or [cnf, stream] for dump :param options: keyword args may contain "ac_safe" to load/dump safely ""...

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36.238095

20.047619

def find_release(package, releases, dependencies=None): """Return the best release.""" dependencies = dependencies if dependencies is not None else {} for release in releases: url = release['url'] old_priority = dependencies.get(package, {}).get('priority', 0) for suffix, priority i...

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38.421053

13.473684

def _prepare_io_handler(self, handler): """Call the `interfaces.IOHandler.prepare` method and remove the handler from unprepared handler list when done. """ logger.debug(" preparing handler: {0!r}".format(handler)) self._unprepared_pending.discard(handler) ret = handler.p...

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44.517241

13.827586

def videoWrite(path, imgs, levels=None, shape=None, frames=15, annotate_names=None, lut=None, updateFn=None): ''' TODO ''' frames = int(frames) if annotate_names is not None: assert len(annotate_names) == len(imgs) if levels is None: if i...

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29.691176

18.191176

def derive(self, peerkey, **kwargs): """ Derives shared key (DH,ECDH,VKO 34.10). Requires private key available @param peerkey - other key (may be public only) Keyword parameters are algorithm-specific """ if not self.cansign: raise ValueError("No pr...

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43.5

16.777778

def recv_loop(stream): """Yield Erlang terms from an input stream.""" message = recv(stream) while message: yield message message = recv(stream)

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27.833333

13.833333

def log_all(self, file): """Log all data received from RFLink to file.""" global rflink_log if file == None: rflink_log = None else: log.debug('logging to: %s', file) rflink_log = open(file, 'a')

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32

11.25

def parse(self, date, **kwargs): ''' :param **kwargs: any kwargs accepted by dateutil.parse function. ''' qualifiers = [] if dateutil_parser is None: return None date = orig_date = date.strip() # various normalizations # TODO: call .lower() fi...

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34.876543

17.518519

def _add_to_conf(self, new_conf): """Add new configuration to self.conf. Adds configuration parameters in new_con to self.conf. If they already existed in conf, overwrite them. :param new_conf: new configuration, to add """ for section in new_conf: if secti...

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34.666667

17.266667

def allow_port(port, proto='tcp', direction='both'): ''' Like allow_ports, but it will append to the existing entry instead of replacing it. Takes a single port instead of a list of ports. CLI Example: .. code-block:: bash salt '*' csf.allow_port 22 proto='tcp' direction='in' ''' ...

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29.956522

20.130435

def plot_roc(y_true, y_probas, title='ROC Curves', plot_micro=True, plot_macro=True, classes_to_plot=None, ax=None, figsize=None, cmap='nipy_spectral', title_fontsize="large", text_fontsize="medium"): """Generates the ROC curves from labels and predicted scor...

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38.692308

23.069231

def __compose(self): """ Compose the message, pulling together body, attachments etc """ msg = MIMEMultipart() msg['Subject'] = self.config['shutit.core.alerting.emailer.subject'] msg['To'] = self.config['shutit.core.alerting.emailer.mailto'] msg['From'] = self.config['shutit.core.alerting.emailer....

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45.421053

21.526316

def to_dataframe(self, dtypes=None): """Create a :class:`pandas.DataFrame` of all rows in the stream. This method requires the pandas libary to create a data frame and the fastavro library to parse row blocks. .. warning:: DATETIME columns are not supported. They are curren...

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35.3

21.466667

def create_articles(self, project, articleset, json_data=None, **options): """ Create one or more articles in the set. Provide the needed arguments using the json_data or with key-value pairs @param json_data: A dictionary or list of dictionaries. Each dict can ...

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50.894737

19

def t_istringapostrophe_css_string(self, t): r'[^\'@]+' t.lexer.lineno += t.value.count('\n') return t

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30.75

13.75

def find(self, name, required): """ Finds all matching dependencies by their name. :param name: the dependency name to locate. :param required: true to raise an exception when no dependencies are found. :return: a list of found dependencies """ if name == None:...

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29.65

18.45

def download_extract(url): """download and extract file.""" logger.info("Downloading %s", url) request = urllib2.Request(url) request.add_header('User-Agent', 'caelum/0.1 +https://github.com/nrcharles/caelum') opener = urllib2.build_opener() with tempfile.TemporaryFile(suf...

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46.333333

14.466667

def _reldiff(a, b): """ Computes the relative difference of two floating-point numbers rel = abs(a-b)/min(abs(a), abs(b)) If a == 0 and b == 0, then 0.0 is returned Otherwise if a or b is 0.0, inf is returned. """ a = float(a) b = float(b) aa = abs(a) ba = abs(b) if a == ...

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20.47619

20.190476

def turn_right(self, angle_degrees, rate=RATE): """ Turn to the right, staying on the spot :param angle_degrees: How far to turn (degrees) :param rate: The trurning speed (degrees/second) :return: """ flight_time = angle_degrees / rate self.start_turn_ri...

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28.384615

14.230769

def api_call(self, opts, args=None, body=None, **kwargs): """Setup the request""" if args: path = opts['name'] % args else: path = opts['name'] path = '/api/v1%s' % path return self._request( opts['method'], path=path, payload=body, **kwargs)

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34.444444

13.222222

def stop_receive(self, fd): """ Stop yielding readability events for `fd`. Redundant calls to :meth:`stop_receive` are silently ignored, this may change in future. """ self._rfds.pop(fd, None) self._update(fd)

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28.666667

15.555556

def cythonize(*args, **kwargs): ''' dirty hack, only import cythonize at the time you use it. if you don't write Cython extension, you won't fail even if you don't install Cython. ''' global cythonize from Cython.Build import cythonize return cythonize(*args, **kwargs)

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29.3

17.3

def arrows(self): """Iterate over all my arrows.""" for o in self.arrow.values(): for arro in o.values(): yield arro

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31.2

9

def is_dir(self, follow_symlinks=True): """ Return True if this entry is a directory or a symbolic link pointing to a directory; return False if the entry is or points to any other kind of file, or if it doesn’t exist anymore. The result is cached on the os.DirEntry object. ...

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34.857143

20.214286

def unprotect(self, **kwargs): """Unprotect the branch. Args: **kwargs: Extra options to send to the server (e.g. sudo) Raises: GitlabAuthenticationError: If authentication is not correct GitlabProtectError: If the branch could not be unprotected """...

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36.214286

19.142857

def sexagesimal(sexathang, latlon, form='DDD'): """ Arguments: sexathang: (float), -15.560615 (negative = South), -146.241122 (negative = West) # Apataki Carenage latlon: (str) 'lat' | 'lon' form: (str), 'DDD'|'DMM'|'DMS', decimal Degrees, decimal Minutes, decimal Seconds Returns: ...

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31.791667

21.291667

def avail_images(call=None): ''' Return available Packet os images. CLI Example: .. code-block:: bash salt-cloud --list-images packet-provider salt-cloud -f avail_images packet-provider ''' if call == 'action': raise SaltCloudException( 'The avail_images fu...

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21.814815

24.851852

def read_from_file(filename): """ Arguments: | ``filename`` -- the filename of the input file Use as follows:: >>> if = CP2KInputFile.read_from_file("somefile.inp") >>> for section in if: ... print section.name """ ...

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27.631579

14.684211

def next_line(self): """Read the next line from the line generator and split it""" self.line = next(self.lines) # Will raise StopIteration when there are no more lines self.values = self.line.split()

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55.25

18.5

def _set_labels(self, axes, dimensions, xlabel=None, ylabel=None, zlabel=None): """ Sets the labels of the axes using the supplied list of dimensions. Optionally explicit labels may be supplied to override the dimension label. """ xlabel, ylabel, zlabel = self._get_axis_l...

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52.6

21.533333

def to_number(obj): ''' Cast an arbitrary object or sequence to a number type ''' if isinstance(obj, LiteralWrapper): val = obj.obj elif isinstance(obj, Iterable) and not isinstance(obj, str): val = next(obj, None) else: val = obj if val is None: #FIXME: Shoul...

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29.428571

19.809524

def vm_get_network_by_name(vm, network_name): """ Try to find Network scanning all attached to VM networks :param vm: <vim.vm> :param network_name: <str> name of network :return: <vim.vm.Network or None> """ # return None for network in vm.network: ...

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35.5

11.833333

def union(self, a, b): """Merges the set that contains ``a`` with the set that contains ``b``. Parameters ---------- a, b : objects Two objects whose sets are to be merged. """ s1, s2 = self.find(a), self.find(b) if s1 != s2: r1, r2 = sel...

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29.55

14.15

def interrupt_then_kill(self, delay=2.0): """Send INT, wait a delay and then send KILL.""" try: self.signal(SIGINT) except Exception: self.log.debug("interrupt failed") pass self.killer = ioloop.DelayedCallback(lambda : self.signal(SIGKILL), delay*100...

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39.222222

17.222222

def resolve_response_data(head_key, data_key, data): """ Resolves the responses you get from billomat If you have done a get_one_element request then you will get a dictionary If you have done a get_all_elements request then you will get a list with all elements in it :param hea...

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42.178571

17.678571

def get_anniversary_periods(start, finish, anniversary=1): """ Return a list of anniversaries periods between start and finish. """ import sys current = start periods = [] while current <= finish: (period_start, period_finish) = date_period(DATE_FREQUENCY_MONTHLY, anniversary, curre...

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42

21.714286

def site_content(self, election_day): """ Site content represents content for the entire site on a given election day. """ from electionnight.models import PageType page_type = PageType.objects.get( model_type=ContentType.objects.get( app_labe...

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34.578947

14.578947

def make_cutter(self): """ Makes a shape to be used as a negative; it can be cut away from other shapes to make a perfectly shaped pocket for this part. For example, for a countersunk screw with a neck, the following cutter would be generated. .. image:: /_static/img/fa...

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36.242424

23.333333

def lotus_root_data(): """Tomographic X-ray data of a lotus root. Notes ----- See the article `Tomographic X-ray data of a lotus root filled with attenuating objects`_ for further information. See Also -------- lotus_root_geometry References ---------- .. _Tomographic X-ra...

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27.807692

22.692308

def _normalizePoint(self, x, y): """Check if a point is in bounds and make minor adjustments. Respects Pythons negative indexes. -1 starts at the bottom right. Replaces the _drawable function """ # cast to int, always faster than type checking x = int(x) y = int...

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35.6875

18.25

def parse_v3_unit_placement(placement_str): """Return a UnitPlacement for bundles version 3, given a placement string. See https://github.com/juju/charmstore/blob/v4/docs/bundles.md Raise a ValueError if the placement is not valid. """ placement = placement_str container = machine = service = u...

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39.771429

14.828571

def update_contributions(sender, instance, action, model, pk_set, **kwargs): """Creates a contribution for each author added to an article. """ if action != 'pre_add': return else: for author in model.objects.filter(pk__in=pk_set): update_content_contributions(instance, autho...

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39.375

17.75

def create_tarfile(self): """ Create a tar file with the contents of the current directory """ floyd_logger.info("Compressing data...") # Show progress bar (file_compressed/file_to_compress) self.__compression_bar = ProgressBar(expected_size=self.__files_to_compress, fill...

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52.327586

23.672414

def example_exc_handler(tries_remaining, exception, delay): """Example exception handler; prints a warning to stderr. tries_remaining: The number of tries remaining. exception: The exception instance which was raised. """ print >> sys.stderr, "Caught '%s', %d tries remaining, sleeping for %s second...

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45.25

16.75

def writeTicks(self, ticks): ''' read quotes ''' tName = self.tableName(HBaseDAM.TICK) if tName not in self.__hbase.getTableNames(): self.__hbase.createTable(tName, [ColumnDescriptor(name=HBaseDAM.TICK, maxVersions=5)]) for tick in ticks: self.__hbase.upda...

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53.272727

26.909091

def process_star(filename, output, *, extension, star_name, period, shift, parameters, period_label, shift_label, **kwargs): """Processes a star's lightcurve, prints its coefficients, and saves its plotted lightcurve to a file. Returns the result of get_lightcurve. """ if star_name is N...

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37.352941

18.676471

def _progress(bytes_received, bytes_total, worker): """Return download progress.""" worker.sig_download_progress.emit( worker.url, worker.path, bytes_received, bytes_total)

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49.25

9.5

def mro(*bases): """Calculate the Method Resolution Order of bases using the C3 algorithm. Suppose you intended creating a class K with the given base classes. This function returns the MRO which K would have, *excluding* K itself (since it doesn't yet exist), as if you had actually created the class. ...

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38.285714

20.571429

def createFromURL(urlOfXMLDefinition): """Factory method to create a DeviceTR64 from an URL to the XML device definitions. :param str urlOfXMLDefinition: :return: the new object :rtype: Wifi """ url = urlparse(urlOfXMLDefinition) if not url.port: if ...

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27.722222

15.5

def parse(grid_str, mode=MODE_ZINC, charset='utf-8'): ''' Parse the given Zinc text and return the equivalent data. ''' # Decode incoming text (or python3 will whine!) if isinstance(grid_str, six.binary_type): grid_str = grid_str.decode(encoding=charset) # Split the separate grids up, t...

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37.5

19.25

def Enable(self, value): "enable or disable all top menus" for i in range(self.GetMenuCount()): self.EnableTop(i, value)

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37

6.5

def get_lines_data(self): """ Returns string:line_numbers list Since all strings are unique it is OK to get line numbers this way. Since same string can occur several times inside single .json file the values should be popped(FIFO) from the list :rtype: list """ ...

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41.7

20.2

def subsample(self, down_to=1, new_path=None): """Pick a number of sequences from the file pseudo-randomly.""" # Auto path # if new_path is None: subsampled = self.__class__(new_temp_path()) elif isinstance(new_path, FASTA): subsampled = new_path else: subsampled =...

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43.105263

18.210526

def get_interpolated_fd_waveform(dtype=numpy.complex64, return_hc=True, **params): """ Return a fourier domain waveform approximant, using interpolation """ def rulog2(val): return 2.0 ** numpy.ceil(numpy.log2(float(val))) orig_approx = params['approximant'] ...

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34.47541

19.196721

def get_command_class(self, cmd): """ Returns command class from the registry for a given ``cmd``. :param cmd: command to run (key at the registry) """ try: cmdpath = self.registry[cmd] except KeyError: raise CommandError("No such command %r" % cm...

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30.866667

14.333333

def addresses_for_key(gpg, key): """ Takes a key and extracts the email addresses for it. """ fingerprint = key["fingerprint"] addresses = [] for key in gpg.list_keys(): if key["fingerprint"] == fingerprint: addresses.extend([address.split("<")[-1].strip(">") ...

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35.818182

12.363636

def cast_bytes(s, encoding=None): """Source: https://github.com/ipython/ipython_genutils""" if not isinstance(s, bytes): return encode(s, encoding) return s

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34.4

9.8

def _dataset_merge_filestore_resource(self, resource, updated_resource, filestore_resources, ignore_fields): # type: (hdx.data.Resource, hdx.data.Resource, List[hdx.data.Resource], List[str]) -> None """Helper method to merge updated resource from dataset into HDX resource read from HDX including filest...

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55.7

28.85

def _get_cores_memory(data, downscale=2): """Retrieve cores and memory, using samtools as baseline. For memory, scaling down because we share with alignment and de-duplication. """ resources = config_utils.get_resources("samtools", data["config"]) num_cores = data["config"]["algorithm"].get("num_co...

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49.3

20.7

def _parse(batch_cmd): """ :rtype: (sh_cmd, batch_to_file_s, batch_from_file) :returns: parsed result like below: .. code-block:: python # when parsing 'diff IN_BATCH0 IN_BATCH1 > OUT_BATCH' ( 'diff /tmp/relshell-AbCDeF /tmp/relshell-uVwXyz', ...

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41.777778

24.666667

def parse_content(self, content): """ Use all the defined scanners to search the log file, setting the properties defined in the scanner. """ self.lines = content for scanner in self.scanners: scanner(self)

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32.375

8.875

def scatter(self, x, y, **kwargs): """Plot a scatter chart using metadata columns see pyam.plotting.scatter() for all available options """ variables = self.data['variable'].unique() xisvar = x in variables yisvar = y in variables if not xisvar and not yisvar: ...

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def write(self)->None: "Writes model gradient statistics to Tensorboard." if len(self.gradients) == 0: return norms = [x.data.norm() for x in self.gradients] self._write_avg_norm(norms=norms) self._write_median_norm(norms=norms) self._write_max_norm(norms=norms) s...

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39.615385

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def get_all_supported_exts_for_type(self, type_to_match: Type[Any], strict: bool) -> Set[str]: """ Utility method to return the set of all supported file extensions that may be converted to objects of the given type. type=JOKER is a joker that means all types :param type_to_match: ...

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def lowpass_fir(self, frequency, order, beta=5.0, remove_corrupted=True): """ Lowpass filter the time series using an FIR filtered generated from the ideal response passed through a kaiser window (beta = 5.0) Parameters ---------- Time Series: TimeSeries The time ser...

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def _set_level_1(self, v, load=False): """ Setter method for level_1, mapped from YANG variable /routing_system/router/isis/router_isis_cmds_holder/address_family/ipv6/af_ipv6_unicast/af_ipv6_attributes/af_common_attributes/redistribute/isis/level_1 (container) If this variable is read-only (config: false) ...

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75.181818

37.772727

def listsdm(sdm, file=None): """Generate a standard "listsdm" listing of(A)SDM dataset contents. sdm (str) The path to the (A)SDM dataset to parse file (stream-like object, such as an opened file) Where to print the human-readable listing. If unspecified, results go to :data:`sys.stdout`....

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39.333333

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def get_choices(cli, prog_name, args, incomplete): """ :param cli: command definition :param prog_name: the program that is running :param args: full list of args :param incomplete: the incomplete text to autocomplete :return: all the possible completions for the incomplete """ all_args ...

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43.522727

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def query_by_attribute(self, key, value, **kwargs): """ Get Build Records by attribute. This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please define a `callback` function to be invoked when receiving the response. >...

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41.733333

15.6

def verify_password(password, password_hash): """Returns ``True`` if the password matches the supplied hash. :param password: A plaintext password to verify :param password_hash: The expected hash value of the password (usually from your database) """ if use_double_hash(pa...

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38

14.090909

def work_in(dirname=None): """Context manager version of os.chdir. When exited, returns to the working directory prior to entering. """ curdir = os.getcwd() try: if dirname is not None: os.chdir(dirname) yield finally: os.chdir(curdir)

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23.75

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def save_named_query(self, alias, querystring, afterwards=None): """ add an alias for a query string. These are stored in the notmuch database and can be used as part of more complex queries using the syntax "query:alias". See :manpage:`notmuch-search-terms(7)` for more info. ...

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40

17.157895

def make_random_models_table(n_sources, param_ranges, random_state=None): """ Make a `~astropy.table.Table` containing randomly generated parameters for an Astropy model to simulate a set of sources. Each row of the table corresponds to a source whose parameters are defined by the column names. Th...

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39.911392

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def run(self): """ Called by the threading system """ try: self._connect() self._register() while True: try: body = self.command_queue.get(block=True, timeout=1 * SECOND) except queue.Empty: ...

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36.105263

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def get(self, name): """Returns a Notification by name. """ if not self.loaded: raise RegistryNotLoaded(self) if not self._registry.get(name): raise NotificationNotRegistered( f"Notification not registered. Got '{name}'." ) retu...

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33.8

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def get_inactive() -> List[str]: """Return the list of inactive subarrays.""" inactive = [] for i in range(__num_subarrays__): key = Subarray.get_key(i) if DB.get_hash_value(key, 'active').upper() == 'FALSE': inactive.append(Subarray.get_id(i)) ret...

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40.625

10.875

def _zeo_key(self, key, new_type=OOBTree): """ Get key from the :attr:`zeo` database root. If the key doesn't exist, create it by calling `new_type` argument. Args: key (str): Key in the root dict. new_type (func/obj): Object/function returning the new instance. ...

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28.526316

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def parse(cls, fptr, offset, length): """Parse JPX free box. Parameters ---------- f : file Open file object. offset : int Start position of box in bytes. length : int Length of the box in bytes. Returns ------- ...

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24.952381

15.285714

def set_tmp_folder(): """ Create a temporary folder using the current time in which the zip can be extracted and which should be destroyed afterward. """ output = "%s" % datetime.datetime.now() for char in [' ', ':', '.', '-']: output = output.replace(char, '') output.strip() tmp_fol...

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38.2

11.6

def from_where(cls, where): """ Factory method for creating the top-level expression """ if where.conjunction: return Conjunction.from_clause(where) else: return cls.from_clause(where[0])

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38.333333

10.666667

def distribution_present(name, region=None, key=None, keyid=None, profile=None, **kwargs): ''' Ensure the given CloudFront distribution exists in the described state. The implementation of this function, and all those following, is orthagonal to that of :py:mod:`boto_cloudfront.present <salt.states...

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46.249211

23.283912

def fulfill(self, method, *args, **kwargs): """ Fulfill an HTTP request to Keen's API. """ return getattr(self.session, method)(*args, **kwargs)

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31.6

20.8

def generate_options(): '''Helper coroutine to identify short options that haven't been used yet. Yields lists of short option (if available) and long option for the given name, keeping track of which short options have been previously used. If you aren't familiar with coroutines, use similar to a ...

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36.952381

19.428571

def routedResource(f, routerAttribute='router'): """ Decorate a router-producing callable to instead produce a resource. This simply produces a new callable that invokes the original callable, and calls ``resource`` on the ``routerAttribute``. If the router producer has multiple routers the attrib...

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32.8

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def smartypants(text): """ Transforms sequences of characters into HTML entities. =================================== ===================== ========= Markdown HTML Result =================================== ===================== ========= ``'s``...

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47.896552

22.655172

def load_tool(result): """ Load the module with the tool-specific code. """ def load_tool_module(tool_module): if not tool_module: logging.warning('Cannot extract values from log files for benchmark results %s ' '(missing attribute "toolmodule" on tag "res...

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40.774194

19.354839

def _hash(expr, func=None): """ Calculate the hash value. :param expr: :param func: hash function :return: """ if func is None: func = lambda x: hash(x) return _map(expr, func=func, rtype=types.int64)

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19.25

17.083333