kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def create_manifest(self, cart_name, manifests): """ `cart_name` - Name of this release cart `manifests` - a list of manifest files """ cart = juicer.common.Cart.Cart(cart_name) for manifest in manifests: cart.add_from_manifest(manifest, self.connectors) ...	[ "def", "create_manifest", "(", "self", ",", "cart_name", ",", "manifests", ")", ":", "cart", "=", "juicer", ".", "common", ".", "Cart", ".", "Cart", "(", "cart_name", ")", "for", "manifest", "in", "manifests", ":", "cart", ".", "add_from_manifest", "(", ...	28.75	14.916667
def is_condition_met(self, hand, win_tile, melds, is_tsumo): """ Three closed pon sets, the other sets need not to be closed :param hand: list of hand's sets :param win_tile: 136 tiles format :param melds: list Meld objects :param is_tsumo: :return: true\|false ...	[ "def", "is_condition_met", "(", "self", ",", "hand", ",", "win_tile", ",", "melds", ",", "is_tsumo", ")", ":", "win_tile", "//=", "4", "open_sets", "=", "[", "x", ".", "tiles_34", "for", "x", "in", "melds", "if", "x", ".", "opened", "]", "chi_sets", ...	32.689655	18.965517
def _support(self, caller): """Helper callback.""" markdown_content = caller() html_content = markdown.markdown( markdown_content, extensions=[ "markdown.extensions.fenced_code", CodeHiliteExtension(css_class="highlight"), "...	[ "def", "_support", "(", "self", ",", "caller", ")", ":", "markdown_content", "=", "caller", "(", ")", "html_content", "=", "markdown", ".", "markdown", "(", "markdown_content", ",", "extensions", "=", "[", "\"markdown.extensions.fenced_code\"", ",", "CodeHiliteExt...	32.5	12.5
def inner(tensor0: BKTensor, tensor1: BKTensor) -> BKTensor: """Return the inner product between two tensors""" # Note: Relying on fact that vdot flattens arrays return np.vdot(tensor0, tensor1)	[ "def", "inner", "(", "tensor0", ":", "BKTensor", ",", "tensor1", ":", "BKTensor", ")", "->", "BKTensor", ":", "# Note: Relying on fact that vdot flattens arrays", "return", "np", ".", "vdot", "(", "tensor0", ",", "tensor1", ")" ]	50.75	9.25
def DOM_querySelector(self, nodeId, selector): """ Function path: DOM.querySelector Domain: DOM Method name: querySelector Parameters: Required arguments: 'nodeId' (type: NodeId) -> Id of the node to query upon. 'selector' (type: string) -> Selector string. Returns: 'nodeId' (type: ...	[ "def", "DOM_querySelector", "(", "self", ",", "nodeId", ",", "selector", ")", ":", "assert", "isinstance", "(", "selector", ",", "(", "str", ",", ")", ")", ",", "\"Argument 'selector' must be of type '['str']'. Received type: '%s'\"", "%", "type", "(", "selector", ...	32.190476	19.047619
def fastp_filtered_reads_chart(self): """ Function to generate the fastp filtered reads bar plot """ # Specify the order of the different possible categories keys = OrderedDict() keys['filtering_result_passed_filter_reads'] = { 'name': 'Passed Filter' } keys['filtering_result_lo...	[ "def", "fastp_filtered_reads_chart", "(", "self", ")", ":", "# Specify the order of the different possible categories", "keys", "=", "OrderedDict", "(", ")", "keys", "[", "'filtering_result_passed_filter_reads'", "]", "=", "{", "'name'", ":", "'Passed Filter'", "}", "keys...	47.277778	20.277778
def _set_learning_mode(self, v, load=False): """ Setter method for learning_mode, mapped from YANG variable /mac_address_table/learning_mode (enumeration) If this variable is read-only (config: false) in the source YANG file, then _set_learning_mode is considered as a private method. Backends lookin...	[ "def", "_set_learning_mode", "(", "self", ",", "v", ",", "load", "=", "False", ")", ":", "if", "hasattr", "(", "v", ",", "\"_utype\"", ")", ":", "v", "=", "v", ".", "_utype", "(", "v", ")", "try", ":", "t", "=", "YANGDynClass", "(", "v", ",", "...	95.375	46.625
def _detach_received(self, error): """Callback called when a link DETACH frame is received. This callback will process the received DETACH error to determine if the link is recoverable or whether it should be shutdown. :param error: The error information from the detach frame. ...	[ "def", "_detach_received", "(", "self", ",", "error", ")", ":", "# pylint: disable=protected-access", "if", "error", ":", "condition", "=", "error", ".", "condition", "description", "=", "error", ".", "description", "info", "=", "error", ".", "info", "else", "...	45.434783	19.565217
def called_with(self, args, *kwargs): """ Before evaluating subsequent predicates, calls :attr:`subject` with given arguments (but unlike a direct call, catches and transforms any exceptions that arise during the call). """ self._args = args self._kwargs = kwargs ...	[ "def", "called_with", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "self", ".", "_args", "=", "args", "self", ".", "_kwargs", "=", "kwargs", "self", ".", "_call_subject", "=", "True", "return", "CallableInspector", "(", "self", ")"...	42	16.444444
def inquire_property(name, doc=None): """Creates a property based on an inquire result This method creates a property that calls the :python:`_inquire` method, and return the value of the requested information. Args: name (str): the name of the 'inquire' result information Returns: ...	[ "def", "inquire_property", "(", "name", ",", "doc", "=", "None", ")", ":", "def", "inquire_property", "(", "self", ")", ":", "if", "not", "self", ".", "_started", ":", "msg", "=", "(", "\"Cannot read {0} from a security context whose \"", "\"establishment has not ...	29.652174	20.217391
def _perform_unbinds(self, binds): """ Unbinds queues from exchanges. Parameters ---------- binds: list of dicts A list of dicts with the following keys: queue: string - name of the queue to bind exchange: string - name of the exchange to bind routing_key: string - routing key to use for this ...	[ "def", "_perform_unbinds", "(", "self", ",", "binds", ")", ":", "for", "bind", "in", "binds", ":", "self", ".", "logger", ".", "debug", "(", "\"Unbinding queue {0} from exchange {1} with key {2}\"", ".", "format", "(", "bind", "[", "'queue'", "]", ",", "bind",...	34	18.933333
def to_spans(self): "Convert the tree to a set of nonterms and spans." s = set() self._convert_to_spans(self.tree, 1, s) return s	[ "def", "to_spans", "(", "self", ")", ":", "s", "=", "set", "(", ")", "self", ".", "_convert_to_spans", "(", "self", ".", "tree", ",", "1", ",", "s", ")", "return", "s" ]	31.4	18.6
def QA_SU_save_stock_min(client=DATABASE, ui_log=None, ui_progress=None): """save stock_min Keyword Arguments: client {[type]} -- [description] (default: {DATABASE}) """ stock_list = QA_fetch_get_stock_list().code.unique().tolist() coll = client.stock_min coll.create_index( [ ...	[ "def", "QA_SU_save_stock_min", "(", "client", "=", "DATABASE", ",", "ui_log", "=", "None", ",", "ui_progress", "=", "None", ")", ":", "stock_list", "=", "QA_fetch_get_stock_list", "(", ")", ".", "code", ".", "unique", "(", ")", ".", "tolist", "(", ")", "...	34.704918	14.655738
def _posify_mask_subindexer(index): """Convert masked indices in a flat array to the nearest unmasked index. Parameters ---------- index : np.ndarray One dimensional ndarray with dtype=int. Returns ------- np.ndarray One dimensional ndarray with all values equal to -1 repla...	[ "def", "_posify_mask_subindexer", "(", "index", ")", ":", "masked", "=", "index", "==", "-", "1", "unmasked_locs", "=", "np", ".", "flatnonzero", "(", "~", "masked", ")", "if", "not", "unmasked_locs", ".", "size", ":", "# indexing unmasked_locs is invalid", "r...	31.833333	17.208333
def do_alarm_definition_delete(mc, args): '''Delete the alarm definition.''' fields = {} fields['alarm_id'] = args.id try: mc.alarm_definitions.delete(**fields) except (osc_exc.ClientException, k_exc.HttpError) as he: raise osc_exc.CommandError('%s\n%s' % (he.message, he.details)) ...	[ "def", "do_alarm_definition_delete", "(", "mc", ",", "args", ")", ":", "fields", "=", "{", "}", "fields", "[", "'alarm_id'", "]", "=", "args", ".", "id", "try", ":", "mc", ".", "alarm_definitions", ".", "delete", "(", "", "", "fields", ")", "except",...	37.3	16.9
def date(f, args, kwargs): """Automatically log progress on function entry and exit with date- and time- stamp. Default logging value: info. Logging with values contained in the parameters of the decorated function* Message (args[0]) may be a string to be formatted with parameters passed to the...	[ "def", "date", "(", "f", ",", "", "args", ",", "", "", "kwargs", ")", ":", "kwargs", ".", "update", "(", "{", "'print_time'", ":", "True", "}", ")", "return", "_stump", "(", "f", ",", "", "args", ",", "", "", "kwargs", ")" ]	38	22.086957
def read_seg(self, parc_type='aparc'): """Read the MRI segmentation. Parameters ---------- parc_type : str 'aparc' or 'aparc.a2009s' Returns ------- numpy.ndarray 3d matrix with values numpy.ndarray 4x4 affine matrix ...	[ "def", "read_seg", "(", "self", ",", "parc_type", "=", "'aparc'", ")", ":", "seg_file", "=", "self", ".", "dir", "/", "'mri'", "/", "(", "parc_type", "+", "'+aseg.mgz'", ")", "seg_mri", "=", "load", "(", "seg_file", ")", "seg_aff", "=", "seg_mri", ".",...	25.5	15.2
def check_recommended_files(data, vcs): """Do check for recommended files. Returns True when all is fine. """ main_files = os.listdir(data['workingdir']) if not 'setup.py' in main_files and not 'setup.cfg' in main_files: # Not a python package. We have no recommendations. return Tr...	[ "def", "check_recommended_files", "(", "data", ",", "vcs", ")", ":", "main_files", "=", "os", ".", "listdir", "(", "data", "[", "'workingdir'", "]", ")", "if", "not", "'setup.py'", "in", "main_files", "and", "not", "'setup.cfg'", "in", "main_files", ":", "...	40.030303	16.606061
async def pendings(self, tasks=None): """Used for await in coroutines. `await loop.pendings()` `await loop.pendings(tasks)` """ tasks = tasks or self.todo_tasks await asyncio.gather(*tasks, loop=self.loop)	[ "async", "def", "pendings", "(", "self", ",", "tasks", "=", "None", ")", ":", "tasks", "=", "tasks", "or", "self", ".", "todo_tasks", "await", "asyncio", ".", "gather", "(", "*", "tasks", ",", "loop", "=", "self", ".", "loop", ")" ]	35.285714	4
def get_repositories_by_genus_type(self, repository_genus_type=None): """Gets a ``RepositoryList`` corresponding to the given repository genus ``Type`` which does not include repositories of types derived from the specified ``Type``. In plenary mode, the returned list contains all known ...	[ "def", "get_repositories_by_genus_type", "(", "self", ",", "repository_genus_type", "=", "None", ")", ":", "if", "repository_genus_type", "is", "None", ":", "raise", "NullArgument", "(", ")", "url_path", "=", "construct_url", "(", "'objective_banks'", ")", "reposito...	49.533333	21.6
def query(self): """A QueryDict object holding the query parameters (QUERY_STRING).""" if self._query is None: query_string = self.environ.get('QUERY_STRING') self._query = QueryDict([ (k.decode('utf-8'), v.decode('utf-8')) for k, v in urlparse.par...	[ "def", "query", "(", "self", ")", ":", "if", "self", ".", "_query", "is", "None", ":", "query_string", "=", "self", ".", "environ", ".", "get", "(", "'QUERY_STRING'", ")", "self", ".", "_query", "=", "QueryDict", "(", "[", "(", "k", ".", "decode", ...	41.8	13.3
def default_middlewares(web3): """ List the default middlewares for the request manager. Leaving ens unspecified will prevent the middleware from resolving names. """ return [ (request_parameter_normalizer, 'request_param_normalizer'), (gas_price_strategy_...	[ "def", "default_middlewares", "(", "web3", ")", ":", "return", "[", "(", "request_parameter_normalizer", ",", "'request_param_normalizer'", ")", ",", "(", "gas_price_strategy_middleware", ",", "'gas_price_strategy'", ")", ",", "(", "name_to_address_middleware", "(", "we...	44.133333	17.2
def modify_process_property(self, key, value, pid=None): ''' modify_process_property(self, key, value, pid=None) Modify process output property. Please note that the process property key provided must be declared as an output property in the relevant service specification. :Par...	[ "def", "modify_process_property", "(", "self", ",", "key", ",", "value", ",", "pid", "=", "None", ")", ":", "pid", "=", "self", ".", "_get_pid", "(", "pid", ")", "request_data", "=", "{", "\"key\"", ":", "key", ",", "\"value\"", ":", "value", "}", "r...	44.363636	33.454545
def register_request(self, valid_responses): """Register a RPC request. :param list valid_responses: List of possible Responses that we should be waiting for. :return: """ uuid = str(uuid4()) self._response[uuid] = [] for acti...	[ "def", "register_request", "(", "self", ",", "valid_responses", ")", ":", "uuid", "=", "str", "(", "uuid4", "(", ")", ")", "self", ".", "_response", "[", "uuid", "]", "=", "[", "]", "for", "action", "in", "valid_responses", ":", "self", ".", "_request"...	32.666667	13.416667
def calendar(type='holiday', direction='next', last=1, startDate=None, token='', version=''): '''This call allows you to fetch a number of trade dates or holidays from a given date. For example, if you want the next trading day, you would call /ref-data/us/dates/trade/next/1. https://iexcloud.io/docs/api/#u-s-...	[ "def", "calendar", "(", "type", "=", "'holiday'", ",", "direction", "=", "'next'", ",", "last", "=", "1", ",", "startDate", "=", "None", ",", "token", "=", "''", ",", "version", "=", "''", ")", ":", "if", "startDate", ":", "startDate", "=", "_strOrDa...	47.333333	32.952381
def efficient_frontier(self, points): """Get the efficient frontier""" mu, sigma, weights = [], [], [] # remove the 1, to avoid duplications a = np.linspace(0, 1, points / len(self.w))[:-1] b = list(range(len(self.w) - 1)) for i in b: w0, w1 = self.w[i], self....	[ "def", "efficient_frontier", "(", "self", ",", "points", ")", ":", "mu", ",", "sigma", ",", "weights", "=", "[", "]", ",", "[", "]", ",", "[", "]", "# remove the 1, to avoid duplications", "a", "=", "np", ".", "linspace", "(", "0", ",", "1", ",", "po...	43.235294	10.647059
def is_field_method(node): """Checks if a call to a field instance method is valid. A call is valid if the call is a method of the underlying type. So, in a StringField the methods from str are valid, in a ListField the methods from list are valid and so on...""" name = node.attrname parent = no...	[ "def", "is_field_method", "(", "node", ")", ":", "name", "=", "node", ".", "attrname", "parent", "=", "node", ".", "last_child", "(", ")", "inferred", "=", "safe_infer", "(", "parent", ")", "if", "not", "inferred", ":", "return", "False", "for", "cls_nam...	32.882353	21.176471
def _save_state(self): """ Helper context manager for :meth:`buffer` which saves the whole state. This is broken out in a separate method for readability and tested indirectly by testing :meth:`buffer`. """ ns_prefixes_floating_in = copy.copy(self._ns_prefixes_floating_i...	[ "def", "_save_state", "(", "self", ")", ":", "ns_prefixes_floating_in", "=", "copy", ".", "copy", "(", "self", ".", "_ns_prefixes_floating_in", ")", "ns_prefixes_floating_out", "=", "copy", ".", "copy", "(", "self", ".", "_ns_prefixes_floating_out", ")", "ns_decls...	47.2	18.866667
def _update_usage_plan_apis(plan_id, apis, op, region=None, key=None, keyid=None, profile=None): ''' Helper function that updates the usage plan identified by plan_id by adding or removing it to each of the stages, specified by apis parameter. apis a list of dictionaries, where each dictionary cont...	[ "def", "_update_usage_plan_apis", "(", "plan_id", ",", "apis", ",", "op", ",", "region", "=", "None", ",", "key", "=", "None", ",", "keyid", "=", "None", ",", "profile", "=", "None", ")", ":", "try", ":", "patchOperations", "=", "[", "]", "for", "api...	38.794118	28.323529
def json(self, start=None): """ :param start: start key in dot notation returns the dict in json format :return: json string version :rtype: string """ if start is not None: data = self.data[start] return json.dumps(self.data, indent=4)	[ "def", "json", "(", "self", ",", "start", "=", "None", ")", ":", "if", "start", "is", "not", "None", ":", "data", "=", "self", ".", "data", "[", "start", "]", "return", "json", ".", "dumps", "(", "self", ".", "data", ",", "indent", "=", "4", ")...	30.3	6.5
def save_credentials(self, profile): """ Saves credentials to a dotfile so you can open them grab them later. Parameters ---------- profile: str name for your profile (i.e. "dev", "prod") """ filename = profile_path(S3_PROFILE_ID, profile) cre...	[ "def", "save_credentials", "(", "self", ",", "profile", ")", ":", "filename", "=", "profile_path", "(", "S3_PROFILE_ID", ",", "profile", ")", "creds", "=", "{", "\"access_key\"", ":", "self", ".", "access_key", ",", "\"secret_key\"", ":", "self", ".", "secre...	29.666667	15.533333
def notify(self, frame_type, headers=None, body=None): """ Utility function for notifying listeners of incoming and outgoing messages :param str frame_type: the type of message :param dict headers: the map of headers associated with the message :param body: the content of the me...	[ "def", "notify", "(", "self", ",", "frame_type", ",", "headers", "=", "None", ",", "body", "=", "None", ")", ":", "if", "frame_type", "==", "'receipt'", ":", "# logic for wait-on-receipt notification", "receipt", "=", "headers", "[", "'receipt-id'", "]", "rece...	37.25	16.285714
def _checkpointLabelFromCheckpointDir(checkpointDir): """Returns a checkpoint label string for the given model checkpoint directory checkpointDir: relative or absolute model checkpoint directory path """ assert checkpointDir.endswith(g_defaultCheckpointExtension) lastSegment = os.path.split(checkpointDir)[1...	[ "def", "_checkpointLabelFromCheckpointDir", "(", "checkpointDir", ")", ":", "assert", "checkpointDir", ".", "endswith", "(", "g_defaultCheckpointExtension", ")", "lastSegment", "=", "os", ".", "path", ".", "split", "(", "checkpointDir", ")", "[", "1", "]", "checkp...	33.916667	22.916667
def _pdf(self, phi): """ Evaluate the _unnormalized_ flow PDF. """ pdf = np.inner(self._vn, np.cos(np.outer(phi, self._n))) pdf *= 2. pdf += 1. return pdf	[ "def", "_pdf", "(", "self", ",", "phi", ")", ":", "pdf", "=", "np", ".", "inner", "(", "self", ".", "_vn", ",", "np", ".", "cos", "(", "np", ".", "outer", "(", "phi", ",", "self", ".", "_n", ")", ")", ")", "pdf", "*=", "2.", "pdf", "+=", ...	20.3	19.7
def _merge_and_bgzip(orig_files, out_file, base_file, ext=""): """Merge a group of gzipped input files into a final bgzipped output. Also handles providing unique names for each input file to avoid collisions on multi-region output. Handles renaming with awk magic from: https://www.biostars.org/p/68477...	[ "def", "_merge_and_bgzip", "(", "orig_files", ",", "out_file", ",", "base_file", ",", "ext", "=", "\"\"", ")", ":", "assert", "out_file", ".", "endswith", "(", "\".gz\"", ")", "full_file", "=", "out_file", ".", "replace", "(", "\".gz\"", ",", "\"\"", ")", ...	44.272727	16.727273
def fit(self, P): """Fit the diagonal matrices in Sinkhorn Knopp's algorithm Parameters ---------- P : 2d array-like Must be a square non-negative 2d array-like object, that is convertible to a numpy array. The matrix must not be equal to 0 and it must have total...	[ "def", "fit", "(", "self", ",", "P", ")", ":", "P", "=", "np", ".", "asarray", "(", "P", ")", "assert", "np", ".", "all", "(", "P", ">=", "0", ")", "assert", "P", ".", "ndim", "==", "2", "assert", "P", ".", "shape", "[", "0", "]", "==", "...	29.422535	19.15493
def respond(text=None, ssml=None, attributes=None, reprompt_text=None, reprompt_ssml=None, end_session=True): """ Build a dict containing a valid response to an Alexa request. If speech output is desired, either of `text` or `ssml` should be specified. :param text: Plain text speech output...	[ "def", "respond", "(", "text", "=", "None", ",", "ssml", "=", "None", ",", "attributes", "=", "None", ",", "reprompt_text", "=", "None", ",", "reprompt_ssml", "=", "None", ",", "end_session", "=", "True", ")", ":", "obj", "=", "{", "'version'", ":", ...	35.358974	25.102564
def encode( self, word, language_arg=0, name_mode='gen', match_mode='approx', concat=False, filter_langs=False, ): """Return the Beider-Morse Phonetic Matching encoding(s) of a term. Parameters ---------- word : str ...	[ "def", "encode", "(", "self", ",", "word", ",", "language_arg", "=", "0", ",", "name_mode", "=", "'gen'", ",", "match_mode", "=", "'approx'", ",", "concat", "=", "False", ",", "filter_langs", "=", "False", ",", ")", ":", "word", "=", "normalize", "(", ...	31.479452	19.246575
def mime_type(self, type_: Optional[MimeType] = None) -> str: """Get a random mime type from list. :param type_: Enum object MimeType. :return: Mime type. """ key = self._validate_enum(item=type_, enum=MimeType) types = MIME_TYPES[key] return self.random.choice(t...	[ "def", "mime_type", "(", "self", ",", "type_", ":", "Optional", "[", "MimeType", "]", "=", "None", ")", "->", "str", ":", "key", "=", "self", ".", "_validate_enum", "(", "item", "=", "type_", ",", "enum", "=", "MimeType", ")", "types", "=", "MIME_TYP...	35.222222	11.777778
def rst_table(data, schema=None): """ Creates a reStructuredText simple table (list of strings) from a list of lists. """ # Process multi-rows (replaced by rows with empty columns when needed) pdata = [] for row in data: prow = [el if isinstance(el, list) else [el] for el in row] pdata.extend(pr f...	[ "def", "rst_table", "(", "data", ",", "schema", "=", "None", ")", ":", "# Process multi-rows (replaced by rows with empty columns when needed)", "pdata", "=", "[", "]", "for", "row", "in", "data", ":", "prow", "=", "[", "el", "if", "isinstance", "(", "el", ","...	32.870968	17.709677
def power(maf=0.5,beta=0.1, N=100, cutoff=5e-8): """ estimate power for a given allele frequency, effect size beta and sample size N Assumption: z-score = beta_ML distributed as p(0) = N(0,1.0(maf(1-maf)N))) under the null hypothesis the actual beta_ML is distributed as p(alt) = N( beta , 1.0/(maf*(1-maf)N) )...	[ "def", "power", "(", "maf", "=", "0.5", ",", "beta", "=", "0.1", ",", "N", "=", "100", ",", "cutoff", "=", "5e-8", ")", ":", "\"\"\"\n\tstd(snp)=sqrt(2.0maf(1-maf)) \n\tpower = \\int \n\n\tbeta_ML = (snp^Tsnp)^{-1}snp^TY = cov(snp,Y)/var(snp) \n\tE[beta_ML]\t= (snp^Ts...	31.244444	23.777778
def cli(out_fmt, input, output): """Converts text.""" _input = StringIO() for l in input: try: _input.write(str(l)) except TypeError: _input.write(bytes(l, 'utf-8')) _input = seria.load(_input) _out = (_input.dump(out_fmt)) output.write(_out)	[ "def", "cli", "(", "out_fmt", ",", "input", ",", "output", ")", ":", "_input", "=", "StringIO", "(", ")", "for", "l", "in", "input", ":", "try", ":", "_input", ".", "write", "(", "str", "(", "l", ")", ")", "except", "TypeError", ":", "_input", "....	26.909091	12.181818
def fsn2text(path, strict=False): """ Args: path (fsnative): The path to convert strict (bool): Fail in case the conversion is not reversible Returns: `text` Raises: TypeError: In case no `fsnative` has been passed ValueError: In case ``strict`` was True and the c...	[ "def", "fsn2text", "(", "path", ",", "strict", "=", "False", ")", ":", "path", "=", "_fsn2native", "(", "path", ")", "errors", "=", "\"strict\"", "if", "strict", "else", "\"replace\"", "if", "is_win", ":", "return", "path", ".", "encode", "(", "\"utf-16-...	32.09375	25.28125
def _partial_corr(self, x=None, y=None, covar=None, x_covar=None, y_covar=None, tail='two-sided', method='pearson'): """Partial and semi-partial correlation.""" stats = partial_corr(data=self, x=x, y=y, covar=covar, x_covar=x_covar, y_covar=y_covar, tail=tail, method=m...	[ "def", "_partial_corr", "(", "self", ",", "x", "=", "None", ",", "y", "=", "None", ",", "covar", "=", "None", ",", "x_covar", "=", "None", ",", "y_covar", "=", "None", ",", "tail", "=", "'two-sided'", ",", "method", "=", "'pearson'", ")", ":", "sta...	56.333333	23.166667
def check_complete(task, out_queue): """ Checks if task is complete, puts the result to out_queue. """ logger.debug("Checking if %s is complete", task) try: is_complete = task.complete() except Exception: is_complete = TracebackWrapper(traceback.format_exc()) out_queue.put((t...	[ "def", "check_complete", "(", "task", ",", "out_queue", ")", ":", "logger", ".", "debug", "(", "\"Checking if %s is complete\"", ",", "task", ")", "try", ":", "is_complete", "=", "task", ".", "complete", "(", ")", "except", "Exception", ":", "is_complete", "...	32.9	11.5
def openconfig_interfaces(device_name=None): ''' .. versionadded:: 2019.2.0 Return a dictionary structured as standardised in the `openconfig-interfaces <http://ops.openconfig.net/branches/master/openconfig-interfaces.html>`_ YANG model, containing physical and configuration data available in Netbo...	[ "def", "openconfig_interfaces", "(", "device_name", "=", "None", ")", ":", "oc_if", "=", "{", "}", "interfaces", "=", "get_interfaces", "(", "device_name", "=", "device_name", ")", "ipaddresses", "=", "get_ipaddresses", "(", "device_name", "=", "device_name", ")...	39.44086	20.989247
def recursive_division(self, cells, min_size, width, height, x=0, y=0, depth=0): """ Recursive division: 1. Split room randomly 1a. Dodge towards larger half if in doorway 2. Place doorway randomly 3. Repeat for each half """ assert isi...	[ "def", "recursive_division", "(", "self", ",", "cells", ",", "min_size", ",", "width", ",", "height", ",", "x", "=", "0", ",", "y", "=", "0", ",", "depth", "=", "0", ")", ":", "assert", "isinstance", "(", "cells", ",", "list", ")", "assert", "isins...	33.327869	17.196721
def teardown(): """Remove integration""" if not self._has_been_setup: return deregister_plugins() deregister_host() if self._has_menu: remove_from_filemenu() self._has_menu = False self._has_been_setup = False print("pyblish: Integration torn down successfully")	[ "def", "teardown", "(", ")", ":", "if", "not", "self", ".", "_has_been_setup", ":", "return", "deregister_plugins", "(", ")", "deregister_host", "(", ")", "if", "self", ".", "_has_menu", ":", "remove_from_filemenu", "(", ")", "self", ".", "_has_menu", "=", ...	21.714286	19.714286
def download(download_info): """Module method for downloading from S3 This public module method takes a key and the full path to the destination directory, assumes that the args have been validated by the public caller methods, and attempts to download the specified key to the dest_dir. :para...	[ "def", "download", "(", "download_info", ")", ":", "log", "=", "logging", ".", "getLogger", "(", "mod_logger", "+", "'.download'", ")", "# Ensure the passed arg is a dict", "if", "not", "isinstance", "(", "download_info", ",", "dict", ")", ":", "msg", "=", "'d...	39.885714	20.8
def get_serial_ports_list(): """ Lists serial port names :raises EnvironmentError: On unsupported or unknown platforms :returns: A list of the serial ports available on the system """ if sys.platform.startswith('win'): ports = ['COM%s' % (i + 1) for i in rang...	[ "def", "get_serial_ports_list", "(", ")", ":", "if", "sys", ".", "platform", ".", "startswith", "(", "'win'", ")", ":", "ports", "=", "[", "'COM%s'", "%", "(", "i", "+", "1", ")", "for", "i", "in", "range", "(", "256", ")", "]", "elif", "(", "sys...	34.294118	14.470588
def _vpcs_path(self): """ Returns the VPCS executable path. :returns: path to VPCS """ search_path = self._manager.config.get_section_config("VPCS").get("vpcs_path", "vpcs") path = shutil.which(search_path) # shutil.which return None if the path doesn't exists ...	[ "def", "_vpcs_path", "(", "self", ")", ":", "search_path", "=", "self", ".", "_manager", ".", "config", ".", "get_section_config", "(", "\"VPCS\"", ")", ".", "get", "(", "\"vpcs_path\"", ",", "\"vpcs\"", ")", "path", "=", "shutil", ".", "which", "(", "se...	29.076923	18.153846
def process_event(self, event_name: str, data: dict) -> None: """ Process event after epoch Args: event_name: whether event is send after epoch or batch. Set of values: ``"after_epoch", "after_batch"`` data: event data (dictionary) Returns: ...	[ "def", "process_event", "(", "self", ",", "event_name", ":", "str", ",", "data", ":", "dict", ")", "->", "None", ":", "if", "event_name", "==", "\"after_epoch\"", ":", "self", ".", "epochs_done", "=", "data", "[", "\"epochs_done\"", "]", "self", ".", "ba...	34.8125	17.0625
def user_absent(name, profile=None, **connection_args): ''' Ensure that the keystone user is absent. name The name of the user that should not exist ''' ret = {'name': name, 'changes': {}, 'result': True, 'comment': 'User "{0}" is already absent'.format(name...	[ "def", "user_absent", "(", "name", ",", "profile", "=", "None", ",", "", "", "connection_args", ")", ":", "ret", "=", "{", "'name'", ":", "name", ",", "'changes'", ":", "{", "}", ",", "'result'", ":", "True", ",", "'comment'", ":", "'User \"{0}\" is ...	34.407407	21
def compute_overlayable_zorders(obj, path=[]): """ Traverses an overlayable composite container to determine which objects are associated with specific (Nd)Overlay layers by z-order, making sure to take DynamicMap Callables into account. Returns a mapping between the zorders of each layer and a ...	[ "def", "compute_overlayable_zorders", "(", "obj", ",", "path", "=", "[", "]", ")", ":", "path", "=", "path", "+", "[", "obj", "]", "zorder_map", "=", "defaultdict", "(", "list", ")", "# Process non-dynamic layers", "if", "not", "isinstance", "(", "obj", ",...	42.824324	17.608108
def newline(self): """Effects a newline by moving the cursor down and clearing""" self.write(self.term.move_down) self.write(self.term.clear_bol)	[ "def", "newline", "(", "self", ")", ":", "self", ".", "write", "(", "self", ".", "term", ".", "move_down", ")", "self", ".", "write", "(", "self", ".", "term", ".", "clear_bol", ")" ]	41.5	6
def display_name(self): """Calculates the display name for a room.""" if self.name: return self.name elif self.canonical_alias: return self.canonical_alias # Member display names without me members = [u.get_display_name(self) for u in self.get_joined_memb...	[ "def", "display_name", "(", "self", ")", ":", "if", "self", ".", "name", ":", "return", "self", ".", "name", "elif", "self", ".", "canonical_alias", ":", "return", "self", ".", "canonical_alias", "# Member display names without me", "members", "=", "[", "u", ...	36.095238	16.428571
def filter_matrix_columns(A, theta): """Filter each column of A with tol. i.e., drop all entries in column k where abs(A[i,k]) < tol max( abs(A[:,k]) ) Parameters ---------- A : sparse_matrix theta : float In range [0,1) and defines drop-tolerance used to filter the columns ...	[ "def", "filter_matrix_columns", "(", "A", ",", "theta", ")", ":", "if", "not", "isspmatrix", "(", "A", ")", ":", "raise", "ValueError", "(", "\"Sparse matrix input needed\"", ")", "if", "isspmatrix_bsr", "(", "A", ")", ":", "blocksize", "=", "A", ".", "blo...	31.506494	19.805195
def designPrimers(p3_args, input_log=None, output_log=None, err_log=None): ''' Return the raw primer3_core output for the provided primer3 args. Returns an ordered dict of the boulderIO-format primer3 output file ''' sp = subprocess.Popen([pjoin(PRIMER3_HOME, 'primer3_core')], ...	[ "def", "designPrimers", "(", "p3_args", ",", "input_log", "=", "None", ",", "output_log", "=", "None", ",", "err_log", "=", "None", ")", ":", "sp", "=", "subprocess", ".", "Popen", "(", "[", "pjoin", "(", "PRIMER3_HOME", ",", "'primer3_core'", ")", "]", ...	41	19
def filter_rep_set(inF, otuSet): """ Parse the rep set file and remove all sequences not associated with unique OTUs. :@type inF: file :@param inF: The representative sequence set :@rtype: list :@return: The set of sequences associated with unique OTUs """ seqs = [] for record ...	[ "def", "filter_rep_set", "(", "inF", ",", "otuSet", ")", ":", "seqs", "=", "[", "]", "for", "record", "in", "SeqIO", ".", "parse", "(", "inF", ",", "\"fasta\"", ")", ":", "if", "record", ".", "id", "in", "otuSet", ":", "seqs", ".", "append", "(", ...	25.875	19
def run_sorter(sorter_name_or_class, recording, output_folder=None, delete_output_folder=False, grouping_property=None, parallel=False, debug=False, **params): """ Generic function to run a sorter via function approach. 2 Usage with name or class: by name: >>> sorting = run_sorte...	[ "def", "run_sorter", "(", "sorter_name_or_class", ",", "recording", ",", "output_folder", "=", "None", ",", "delete_output_folder", "=", "False", ",", "grouping_property", "=", "None", ",", "parallel", "=", "False", ",", "debug", "=", "False", ",", "", "", ...	34.137931	25.448276
def getWordList(ipFile, delim): """ extract a unique list of words and have line numbers that word appears """ indexedWords = {} totWords = 0 totLines = 0 with codecs.open(ipFile, "r",encoding='utf-8', errors='replace') as f: for line in f: totLines = totLines + 1 ...	[ "def", "getWordList", "(", "ipFile", ",", "delim", ")", ":", "indexedWords", "=", "{", "}", "totWords", "=", "0", "totLines", "=", "0", "with", "codecs", ".", "open", "(", "ipFile", ",", "\"r\"", ",", "encoding", "=", "'utf-8'", ",", "errors", "=", "...	39.105263	16.052632
def parse_time_specification(units, dt=None, n_steps=None, nsteps=None, t1=None, t2=None, t=None): """ Return an array of times given a few combinations of kwargs that are accepted -- see below. Parameters ---------- dt, n_steps[, t1] : (numeric, int[, numeric]) A fixed timestep dt and ...	[ "def", "parse_time_specification", "(", "units", ",", "dt", "=", "None", ",", "n_steps", "=", "None", ",", "nsteps", "=", "None", ",", "t1", "=", "None", ",", "t2", "=", "None", ",", "t", "=", "None", ")", ":", "if", "nsteps", "is", "not", "None", ...	30.94898	21.214286
def public_ip_address_get(name, resource_group, **kwargs): ''' .. versionadded:: 2019.2.0 Get details about a specific public IP address. :param name: The name of the public IP address to query. :param resource_group: The resource group name assigned to the public IP address. CLI Exa...	[ "def", "public_ip_address_get", "(", "name", ",", "resource_group", ",", "", "", "kwargs", ")", ":", "expand", "=", "kwargs", ".", "get", "(", "'expand'", ")", "netconn", "=", "__utils__", "[", "'azurearm.get_client'", "]", "(", "'network'", ",", "", "...	26.235294	25.058824
def create_joints(self): '''Traverse the bone hierarchy and create physics joints.''' stack = ['root'] while stack: parent = stack.pop() for child in self.hierarchy.get(parent, ()): stack.append(child) if parent not in self.bones: ...	[ "def", "create_joints", "(", "self", ")", ":", "stack", "=", "[", "'root'", "]", "while", "stack", ":", "parent", "=", "stack", ".", "pop", "(", ")", "for", "child", "in", "self", ".", "hierarchy", ".", "get", "(", "parent", ",", "(", ")", ")", "...	47.375	17.875
def clean(self, value): """ Convert the value's type and run validation. Validation errors from to_python and validate are propagated. The correct value is returned if no error is raised. """ value = self.to_python(value) self.validate(value) return value	[ "def", "clean", "(", "self", ",", "value", ")", ":", "value", "=", "self", ".", "to_python", "(", "value", ")", "self", ".", "validate", "(", "value", ")", "return", "value" ]	34.555556	15.444444
def fun_inverse(fun=None, y=0, x0=None, args=(), disp=False, method='Nelder-Mead', **kwargs): r"""Find the threshold level that accomplishes the desired specificity Call indicated function repeatedly to find answer to the inverse function evaluation Arguments: fun (function): function to be calculate ...	[ "def", "fun_inverse", "(", "fun", "=", "None", ",", "y", "=", "0", ",", "x0", "=", "None", ",", "args", "=", "(", ")", ",", "disp", "=", "False", ",", "method", "=", "'Nelder-Mead'", ",", "", "", "kwargs", ")", ":", "fun_inverse", ".", "fun", ...	49.942857	26.371429
def min_value(self): """ The minimum pixel value of the ``data`` within the source segment. """ if self._is_completely_masked: return np.nan * self._data_unit else: return np.min(self.values)	[ "def", "min_value", "(", "self", ")", ":", "if", "self", ".", "_is_completely_masked", ":", "return", "np", ".", "nan", "*", "self", ".", "_data_unit", "else", ":", "return", "np", ".", "min", "(", "self", ".", "values", ")" ]	25.5	14.3
def _DiscoverElementTypeFromLocalname(self, type_localname): """Searches all namespaces for a type by name. Args: type_localname: The name of the type. Returns: A fully qualified SOAP type with the specified name. Raises: A zeep.exceptions.LookupError if the type cannot be found in ...	[ "def", "_DiscoverElementTypeFromLocalname", "(", "self", ",", "type_localname", ")", ":", "elem_type", "=", "None", "last_exception", "=", "None", "for", "ns_prefix", "in", "self", ".", "zeep_client", ".", "wsdl", ".", "types", ".", "prefix_map", ".", "values", ...	27.884615	20.692308
def delete_group(group_name, region=None, key=None, keyid=None, profile=None): ''' Delete a group policy. CLI Example:: .. code-block:: bash salt myminion boto_iam.delete_group mygroup ''' conn = _get_conn(region=region, key=key, keyid=keyid, profile=profile) ...	[ "def", "delete_group", "(", "group_name", ",", "region", "=", "None", ",", "key", "=", "None", ",", "keyid", "=", "None", ",", "profile", "=", "None", ")", ":", "conn", "=", "_get_conn", "(", "region", "=", "region", ",", "key", "=", "key", ",", "k...	27.222222	22.333333
def wrapHeart(service): """Wrap a service in a MultiService with a heart""" master = taservice.MultiService() service.setServiceParent(master) maybeAddHeart(master) return master	[ "def", "wrapHeart", "(", "service", ")", ":", "master", "=", "taservice", ".", "MultiService", "(", ")", "service", ".", "setServiceParent", "(", "master", ")", "maybeAddHeart", "(", "master", ")", "return", "master" ]	32.166667	10.333333
def groupby_count(i, key=None, force_keys=None): """ Aggregate iterator values into buckets based on how frequently the values appear. Example:: >>> list(groupby_count([1, 1, 1, 2, 3])) [(1, 3), (2, 1), (3, 1)] """ counter = defaultdict(lambda: 0) if not key: key = lamb...	[ "def", "groupby_count", "(", "i", ",", "key", "=", "None", ",", "force_keys", "=", "None", ")", ":", "counter", "=", "defaultdict", "(", "lambda", ":", "0", ")", "if", "not", "key", ":", "key", "=", "lambda", "o", ":", "o", "for", "k", "in", "i",...	21.809524	19.761905
def get_status(app, repo_config, repo_name, sha): """Gets the status of a commit. .. note:: ``repo_name`` might not ever be anything other than ``repo_config['github_repo']``. :param app: Flask app for leeroy :param repo_config: configuration for the repo :param repo_name: The name...	[ "def", "get_status", "(", "app", ",", "repo_config", ",", "repo_name", ",", "sha", ")", ":", "url", "=", "get_api_url", "(", "app", ",", "repo_config", ",", "github_status_url", ")", ".", "format", "(", "repo_name", "=", "repo_name", ",", "sha", "=", "sh...	37.619048	15.428571
def new_code_block(self, kwargs): """Create a new code block.""" proto = {'content': '', 'type': self.code, 'IO': '', 'attributes': ''} proto.update(kwargs) return proto	[ "def", "new_code_block", "(", "self", ",", "", "", "kwargs", ")", ":", "proto", "=", "{", "'content'", ":", "''", ",", "'type'", ":", "self", ".", "code", ",", "'IO'", ":", "''", ",", "'attributes'", ":", "''", "}", "proto", ".", "update", "(", ...	31.125	8.625
def _upload_to_gcs(self, files_to_upload): """ Upload all of the file splits (and optionally the schema .json file) to Google cloud storage. """ hook = GoogleCloudStorageHook( google_cloud_storage_conn_id=self.google_cloud_storage_conn_id, delegate_to=self...	[ "def", "_upload_to_gcs", "(", "self", ",", "files_to_upload", ")", ":", "hook", "=", "GoogleCloudStorageHook", "(", "google_cloud_storage_conn_id", "=", "self", ".", "google_cloud_storage_conn_id", ",", "delegate_to", "=", "self", ".", "delegate_to", ")", "for", "tm...	45.916667	12.916667
def create(input, template, field, outdir, prefix, otype, command, index, dpi, verbose, unicode_support): """Use docstamp to create documents from the content of a CSV file or a Google Spreadsheet. Examples: \n docstamp create -i badge.csv -t badge_template.svg -o badges docstamp create ...	[ "def", "create", "(", "input", ",", "template", ",", "field", ",", "outdir", ",", "prefix", ",", "otype", ",", "command", ",", "index", ",", "dpi", ",", "verbose", ",", "unicode_support", ")", ":", "logging", ".", "basicConfig", "(", "level", "=", "LOG...	33.897959	21.795918
def as_a_dict(self): """ Displays the index as a dictionary. This includes the design document id, index name, index type, and index definition. :returns: Dictionary representation of the index as a dictionary """ index_dict = { 'ddoc': self._ddoc_id, ...	[ "def", "as_a_dict", "(", "self", ")", ":", "index_dict", "=", "{", "'ddoc'", ":", "self", ".", "_ddoc_id", ",", "'name'", ":", "self", ".", "_name", ",", "'type'", ":", "self", ".", "_type", ",", "'def'", ":", "self", ".", "_def", "}", "if", "self"...	27.888889	19
def negotiate_sasl(transport, xmlstream, sasl_providers, negotiation_timeout, jid, features): """ Perform SASL authentication on the given :class:`.protocol.XMLStream` `stream`. `transport` must be the :class:`asyncio.Transport` over which the `st...	[ "def", "negotiate_sasl", "(", "transport", ",", "xmlstream", ",", "sasl_providers", ",", "negotiation_timeout", ",", "jid", ",", "features", ")", ":", "if", "not", "transport", ".", "get_extra_info", "(", "\"sslcontext\"", ")", ":", "transport", "=", "None", "...	36.761905	23.52381
def append(self, transitions, rows=None): """Append a batch of transitions to rows of the memory. Args: transitions: Tuple of transition quantities with batch dimension. rows: Episodes to append to, defaults to all. Returns: Operation. """ rows = tf.range(self._capacity) if rows ...	[ "def", "append", "(", "self", ",", "transitions", ",", "rows", "=", "None", ")", ":", "rows", "=", "tf", ".", "range", "(", "self", ".", "_capacity", ")", "if", "rows", "is", "None", "else", "rows", "assert", "rows", ".", "shape", ".", "ndims", "==...	39.413793	13.206897
def color(self) -> str: """Get a random name of color. :return: Color name. :Example: Red. """ colors = self._data['color'] return self.random.choice(colors)	[ "def", "color", "(", "self", ")", "->", "str", ":", "colors", "=", "self", ".", "_data", "[", "'color'", "]", "return", "self", ".", "random", ".", "choice", "(", "colors", ")" ]	21	16.1
def extractall(self, directory, auto_create_dir=False, patool_path=None): ''' :param directory: directory to extract to :param auto_create_dir: auto create directory :param patool_path: the path to the patool backend ''' log.debug('extracting %s into %s (backend=%s)', sel...	[ "def", "extractall", "(", "self", ",", "directory", ",", "auto_create_dir", "=", "False", ",", "patool_path", "=", "None", ")", ":", "log", ".", "debug", "(", "'extracting %s into %s (backend=%s)'", ",", "self", ".", "filename", ",", "directory", ",", "self", ...	40.806452	19.064516
def _get_indexable_sentences(document): """ Parameters ---------- document : Text Article, book, paragraph, chapter, etc. Anything that is considered a document on its own. Yields ------ str json representation of elasticsearch type sentence ...	[ "def", "_get_indexable_sentences", "(", "document", ")", ":", "def", "unroll_lists", "(", "list_of_lists", ")", ":", "for", "i", "in", "itertools", ".", "product", "(", "*", "[", "set", "(", "j", ")", "for", "j", "in", "list_of_lists", "]", ")", ":", "...	30.102564	18
def filter_scanline(type, line, fo, prev=None): """Apply a scanline filter to a scanline. `type` specifies the filter type (0 to 4); `line` specifies the current (unfiltered) scanline as a sequence of bytes; `prev` specifies the previous (unfiltered) scanline as a sequence of bytes. `fo` specifies the ...	[ "def", "filter_scanline", "(", "type", ",", "line", ",", "fo", ",", "prev", "=", "None", ")", ":", "assert", "0", "<=", "type", "<", "5", "# The output array. Which, pathetically, we extend one-byte at a", "# time (fortunately this is linear).", "out", "=", "array", ...	29.164706	19.258824
def _compute_distance(cls, dists, coeffs): """ Compute third term of equation (1) on p. 1200: ``b3 * log(sqrt(Rjb 2 + b4 2))`` """ return coeffs['b3']np.log10(np.sqrt(dists.rjb2. + coeffs['b4']*2.))	[ "def", "_compute_distance", "(", "cls", ",", "dists", ",", "coeffs", ")", ":", "return", "coeffs", "[", "'b3'", "]", "", "np", ".", "log10", "(", "np", ".", "sqrt", "(", "dists", ".", "rjb", "", "2.", "+", "coeffs", "[", "'b4'", "]", "*", "2....	34.714286	14.428571
def ask(message, options): """Ask the message interactively, with the given possible responses""" while 1: if os.environ.get('PIP_NO_INPUT'): raise Exception('No input was expected ($PIP_NO_INPUT set); question: %s' % message) response = raw_input(message) response = response...	[ "def", "ask", "(", "message", ",", "options", ")", ":", "while", "1", ":", "if", "os", ".", "environ", ".", "get", "(", "'PIP_NO_INPUT'", ")", ":", "raise", "Exception", "(", "'No input was expected ($PIP_NO_INPUT set); question: %s'", "%", "message", ")", "re...	44.583333	16.75
def com_google_fonts_check_name_license(ttFont, license): """Check copyright namerecords match license file.""" from fontbakery.constants import PLACEHOLDER_LICENSING_TEXT failed = False placeholder = PLACEHOLDER_LICENSING_TEXT[license] entry_found = False for i, nameRecord in enumerate(ttFont["name"].names...	[ "def", "com_google_fonts_check_name_license", "(", "ttFont", ",", "license", ")", ":", "from", "fontbakery", ".", "constants", "import", "PLACEHOLDER_LICENSING_TEXT", "failed", "=", "False", "placeholder", "=", "PLACEHOLDER_LICENSING_TEXT", "[", "license", "]", "entry_f...	48.59375	16.8125
def add_line_error(self, line_data, error_info, log_level=logging.ERROR): """Helper function to record and log an error message :param line_data: dict :param error_info: dict :param logger: :param log_level: int :return: """ if not error_info: return ...	[ "def", "add_line_error", "(", "self", ",", "line_data", ",", "error_info", ",", "log_level", "=", "logging", ".", "ERROR", ")", ":", "if", "not", "error_info", ":", "return", "try", ":", "line_data", "[", "'line_errors'", "]", ".", "append", "(", "error_in...	39.45	23.75
def load_data_old(self): """ Loads time series of 2D data grids from each opened file. The code handles loading a full time series from one file or individual time steps from multiple files. Missing files are supported. """ units = "" if len(self.file_objects) ==...	[ "def", "load_data_old", "(", "self", ")", ":", "units", "=", "\"\"", "if", "len", "(", "self", ".", "file_objects", ")", "==", "1", "and", "self", ".", "file_objects", "[", "0", "]", "is", "not", "None", ":", "data", "=", "self", ".", "file_objects",...	53.225	23.925
def map_sid2sub(self, sid, sub): """ Store the connection between a Session ID and a subject ID. :param sid: Session ID :param sub: subject ID """ self.set('sid2sub', sid, sub) self.set('sub2sid', sub, sid)	[ "def", "map_sid2sub", "(", "self", ",", "sid", ",", "sub", ")", ":", "self", ".", "set", "(", "'sid2sub'", ",", "sid", ",", "sub", ")", "self", ".", "set", "(", "'sub2sid'", ",", "sub", ",", "sid", ")" ]	28.333333	11.222222
def read(fname): """Quick way to read a file content.""" content = None with open(os.path.join(here, fname)) as f: content = f.read() return content	[ "def", "read", "(", "fname", ")", ":", "content", "=", "None", "with", "open", "(", "os", ".", "path", ".", "join", "(", "here", ",", "fname", ")", ")", "as", "f", ":", "content", "=", "f", ".", "read", "(", ")", "return", "content" ]	27.833333	14.666667
def read_xdg_config_home(name, extension): """ Read from file found in XDG-specified configuration home directory, expanding to ``${HOME}/.config/name.extension`` by default. Depends on ``XDG_CONFIG_HOME`` or ``HOME`` environment variables. :param name: application or configuration set name :pa...	[ "def", "read_xdg_config_home", "(", "name", ",", "extension", ")", ":", "# find optional value of ${XDG_CONFIG_HOME}", "config_home", "=", "environ", ".", "get", "(", "'XDG_CONFIG_HOME'", ")", "if", "not", "config_home", ":", "# XDG spec: \"If $XDG_CONFIG_HOME is either not...	50.25	23.35
def _check_load_paths(load_path): ''' Checks the validity of the load_path, returns a sanitized version with invalid paths removed. ''' if load_path is None or not isinstance(load_path, six.string_types): return None _paths = [] for _path in load_path.split(':'): if os.path...	[ "def", "_check_load_paths", "(", "load_path", ")", ":", "if", "load_path", "is", "None", "or", "not", "isinstance", "(", "load_path", ",", "six", ".", "string_types", ")", ":", "return", "None", "_paths", "=", "[", "]", "for", "_path", "in", "load_path", ...	26.7	24.8
def NewType(name, tp): """NewType creates simple unique types with almost zero runtime overhead. NewType(name, tp) is considered a subtype of tp by static type checkers. At runtime, NewType(name, tp) returns a dummy function that simply returns its argument. Usage:: UserId = NewType('UserId', i...	[ "def", "NewType", "(", "name", ",", "tp", ")", ":", "def", "new_type", "(", "x", ")", ":", "return", "x", "new_type", ".", "__name__", "=", "name", "new_type", ".", "__supertype__", "=", "tp", "return", "new_type" ]	27.16	20.84
def _tick(self): """Write progress info and move cursor to beginning of line.""" if (self.verbose >= 3 and not IS_REDIRECTED) or self.options.get("progress"): stats = self.get_stats() prefix = DRY_RUN_PREFIX if self.dry_run else "" sys.stdout.write( "{...	[ "def", "_tick", "(", "self", ")", ":", "if", "(", "self", ".", "verbose", ">=", "3", "and", "not", "IS_REDIRECTED", ")", "or", "self", ".", "options", ".", "get", "(", "\"progress\"", ")", ":", "stats", "=", "self", ".", "get_stats", "(", ")", "pre...	39.466667	16.333333
def equivalent_sites(self, scaled_positions, ondublicates='error', symprec=1e-3): """Returns the scaled positions and all their equivalent sites. Parameters: scaled_positions: list \| array List of non-equivalent sites given in unit cell coordinates. ...	[ "def", "equivalent_sites", "(", "self", ",", "scaled_positions", ",", "ondublicates", "=", "'error'", ",", "symprec", "=", "1e-3", ")", ":", "kinds", "=", "[", "]", "sites", "=", "[", "]", "symprec2", "=", "symprec", "**", "2", "scaled", "=", "np", "."...	37.395349	16.046512
def _get_value(self, node, scope, ctxt, stream): """Return the value of the node. It is expected to be either an AST.ID instance or a constant :node: TODO :returns: TODO """ res = self._handle_node(node, scope, ctxt, stream) if isinstance(res, fields.Field): ...	[ "def", "_get_value", "(", "self", ",", "node", ",", "scope", ",", "ctxt", ",", "stream", ")", ":", "res", "=", "self", ".", "_handle_node", "(", "node", ",", "scope", ",", "ctxt", ",", "stream", ")", "if", "isinstance", "(", "res", ",", "fields", "...	24	19.529412
def standings(self): '''Get standings from the community's account''' headers = {"Content-type": "application/x-www-form-urlencoded","Accept": "text/plain","User-Agent": user_agent} req = self.session.get('http://'+self.domain+'/standings.phtml',headers=headers).content soup = BeautifulS...	[ "def", "standings", "(", "self", ")", ":", "headers", "=", "{", "\"Content-type\"", ":", "\"application/x-www-form-urlencoded\"", ",", "\"Accept\"", ":", "\"text/plain\"", ",", "\"User-Agent\"", ":", "user_agent", "}", "req", "=", "self", ".", "session", ".", "g...	72.555556	44.333333
def commit(cls, client=None): """Commit everything from datapoints via the client. :param client: InfluxDBClient instance for writing points to InfluxDB. :attention: any provided client will supersede the class client. :return: result of client.write_points. """ if not c...	[ "def", "commit", "(", "cls", ",", "client", "=", "None", ")", ":", "if", "not", "client", ":", "client", "=", "cls", ".", "_client", "rtn", "=", "client", ".", "write_points", "(", "cls", ".", "_json_body_", "(", ")", ")", "cls", ".", "_reset_", "(...	36.833333	17.25
def info( self, path="/", # type: Text namespaces=None, # type: Optional[Collection[Text]] **kwargs # type: Any ): # type: (...) -> Iterator[Tuple[Text, Info]] """Walk a filesystem, yielding path and `Info` of resources. Arguments: path (str): ...	[ "def", "info", "(", "self", ",", "path", "=", "\"/\"", ",", "# type: Text", "namespaces", "=", "None", ",", "# type: Optional[Collection[Text]]", "", "", "kwargs", "# type: Any", ")", ":", "# type: (...) -> Iterator[Tuple[Text, Info]]", "walker", "=", "self", ".",...	47.897959	24.979592
def serialize(cls, obj, buf, lineLength, validate): """ Apple's Address Book is really weird with images, it expects base64 data to have very specific whitespace. It seems Address Book can handle PHOTO if it's not wrapped, so don't wrap it. """ if wacky_apple_photo_ser...	[ "def", "serialize", "(", "cls", ",", "obj", ",", "buf", ",", "lineLength", ",", "validate", ")", ":", "if", "wacky_apple_photo_serialize", ":", "lineLength", "=", "REALLY_LARGE", "VCardTextBehavior", ".", "serialize", "(", "obj", ",", "buf", ",", "lineLength",...	47.222222	14.555556
def calculate_elem_per_kb(max_chunk_kb, matrix_dtype): """ Calculates the number of elem per kb depending on the max chunk size set. Input: - max_chunk_kb (int, default=1024): The maximum number of KB a given chunk will occupy - matrix_dtype (numpy dtype, default=numpy.float32): Storage d...	[ "def", "calculate_elem_per_kb", "(", "max_chunk_kb", ",", "matrix_dtype", ")", ":", "if", "matrix_dtype", "==", "numpy", ".", "float32", ":", "return", "(", "max_chunk_kb", "*", "8", ")", "/", "32", "elif", "matrix_dtype", "==", "numpy", ".", "float64", ":",...	46.9	29.6

def create_manifest(self, cart_name, manifests): """ `cart_name` - Name of this release cart `manifests` - a list of manifest files """ cart = juicer.common.Cart.Cart(cart_name) for manifest in manifests: cart.add_from_manifest(manifest, self.connectors) ...

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28.75

14.916667

def is_condition_met(self, hand, win_tile, melds, is_tsumo): """ Three closed pon sets, the other sets need not to be closed :param hand: list of hand's sets :param win_tile: 136 tiles format :param melds: list Meld objects :param is_tsumo: :return: true|false ...

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32.689655

18.965517

def _support(self, caller): """Helper callback.""" markdown_content = caller() html_content = markdown.markdown( markdown_content, extensions=[ "markdown.extensions.fenced_code", CodeHiliteExtension(css_class="highlight"), "...

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32.5

12.5

def inner(tensor0: BKTensor, tensor1: BKTensor) -> BKTensor: """Return the inner product between two tensors""" # Note: Relying on fact that vdot flattens arrays return np.vdot(tensor0, tensor1)

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50.75

9.25

def DOM_querySelector(self, nodeId, selector): """ Function path: DOM.querySelector Domain: DOM Method name: querySelector Parameters: Required arguments: 'nodeId' (type: NodeId) -> Id of the node to query upon. 'selector' (type: string) -> Selector string. Returns: 'nodeId' (type: ...

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32.190476

19.047619

def fastp_filtered_reads_chart(self): """ Function to generate the fastp filtered reads bar plot """ # Specify the order of the different possible categories keys = OrderedDict() keys['filtering_result_passed_filter_reads'] = { 'name': 'Passed Filter' } keys['filtering_result_lo...

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47.277778

20.277778

def _set_learning_mode(self, v, load=False): """ Setter method for learning_mode, mapped from YANG variable /mac_address_table/learning_mode (enumeration) If this variable is read-only (config: false) in the source YANG file, then _set_learning_mode is considered as a private method. Backends lookin...

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95.375

46.625

def _detach_received(self, error): """Callback called when a link DETACH frame is received. This callback will process the received DETACH error to determine if the link is recoverable or whether it should be shutdown. :param error: The error information from the detach frame. ...

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45.434783

19.565217

def called_with(self, *args, **kwargs): """ Before evaluating subsequent predicates, calls :attr:`subject` with given arguments (but unlike a direct call, catches and transforms any exceptions that arise during the call). """ self._args = args self._kwargs = kwargs ...

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42

16.444444

def inquire_property(name, doc=None): """Creates a property based on an inquire result This method creates a property that calls the :python:`_inquire` method, and return the value of the requested information. Args: name (str): the name of the 'inquire' result information Returns: ...

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29.652174

20.217391

def _perform_unbinds(self, binds): """ Unbinds queues from exchanges. Parameters ---------- binds: list of dicts A list of dicts with the following keys: queue: string - name of the queue to bind exchange: string - name of the exchange to bind routing_key: string - routing key to use for this ...

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34

18.933333

def to_spans(self): "Convert the tree to a set of nonterms and spans." s = set() self._convert_to_spans(self.tree, 1, s) return s

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31.4

18.6

def QA_SU_save_stock_min(client=DATABASE, ui_log=None, ui_progress=None): """save stock_min Keyword Arguments: client {[type]} -- [description] (default: {DATABASE}) """ stock_list = QA_fetch_get_stock_list().code.unique().tolist() coll = client.stock_min coll.create_index( [ ...

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34.704918

14.655738

def _posify_mask_subindexer(index): """Convert masked indices in a flat array to the nearest unmasked index. Parameters ---------- index : np.ndarray One dimensional ndarray with dtype=int. Returns ------- np.ndarray One dimensional ndarray with all values equal to -1 repla...

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31.833333

17.208333

def do_alarm_definition_delete(mc, args): '''Delete the alarm definition.''' fields = {} fields['alarm_id'] = args.id try: mc.alarm_definitions.delete(**fields) except (osc_exc.ClientException, k_exc.HttpError) as he: raise osc_exc.CommandError('%s\n%s' % (he.message, he.details)) ...

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37.3

16.9

def date(f, *args, **kwargs): """Automatically log progress on function entry and exit with date- and time- stamp. Default logging value: info. *Logging with values contained in the parameters of the decorated function* Message (args[0]) may be a string to be formatted with parameters passed to the...

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38

22.086957

def read_seg(self, parc_type='aparc'): """Read the MRI segmentation. Parameters ---------- parc_type : str 'aparc' or 'aparc.a2009s' Returns ------- numpy.ndarray 3d matrix with values numpy.ndarray 4x4 affine matrix ...

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25.5

15.2

def check_recommended_files(data, vcs): """Do check for recommended files. Returns True when all is fine. """ main_files = os.listdir(data['workingdir']) if not 'setup.py' in main_files and not 'setup.cfg' in main_files: # Not a python package. We have no recommendations. return Tr...

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40.030303

16.606061

async def pendings(self, tasks=None): """Used for await in coroutines. `await loop.pendings()` `await loop.pendings(tasks)` """ tasks = tasks or self.todo_tasks await asyncio.gather(*tasks, loop=self.loop)

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35.285714

4

def get_repositories_by_genus_type(self, repository_genus_type=None): """Gets a ``RepositoryList`` corresponding to the given repository genus ``Type`` which does not include repositories of types derived from the specified ``Type``. In plenary mode, the returned list contains all known ...

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49.533333

21.6

def query(self): """A QueryDict object holding the query parameters (QUERY_STRING).""" if self._query is None: query_string = self.environ.get('QUERY_STRING') self._query = QueryDict([ (k.decode('utf-8'), v.decode('utf-8')) for k, v in urlparse.par...

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41.8

13.3

def default_middlewares(web3): """ List the default middlewares for the request manager. Leaving ens unspecified will prevent the middleware from resolving names. """ return [ (request_parameter_normalizer, 'request_param_normalizer'), (gas_price_strategy_...

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44.133333

17.2

def modify_process_property(self, key, value, pid=None): ''' modify_process_property(self, key, value, pid=None) Modify process output property. Please note that the process property key provided must be declared as an output property in the relevant service specification. :Par...

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44.363636

33.454545

def register_request(self, valid_responses): """Register a RPC request. :param list valid_responses: List of possible Responses that we should be waiting for. :return: """ uuid = str(uuid4()) self._response[uuid] = [] for acti...

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32.666667

13.416667

def calendar(type='holiday', direction='next', last=1, startDate=None, token='', version=''): '''This call allows you to fetch a number of trade dates or holidays from a given date. For example, if you want the next trading day, you would call /ref-data/us/dates/trade/next/1. https://iexcloud.io/docs/api/#u-s-...

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47.333333

32.952381

def efficient_frontier(self, points): """Get the efficient frontier""" mu, sigma, weights = [], [], [] # remove the 1, to avoid duplications a = np.linspace(0, 1, points / len(self.w))[:-1] b = list(range(len(self.w) - 1)) for i in b: w0, w1 = self.w[i], self....

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43.235294

10.647059

def is_field_method(node): """Checks if a call to a field instance method is valid. A call is valid if the call is a method of the underlying type. So, in a StringField the methods from str are valid, in a ListField the methods from list are valid and so on...""" name = node.attrname parent = no...

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32.882353

21.176471

def _save_state(self): """ Helper context manager for :meth:`buffer` which saves the whole state. This is broken out in a separate method for readability and tested indirectly by testing :meth:`buffer`. """ ns_prefixes_floating_in = copy.copy(self._ns_prefixes_floating_i...

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47.2

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def _update_usage_plan_apis(plan_id, apis, op, region=None, key=None, keyid=None, profile=None): ''' Helper function that updates the usage plan identified by plan_id by adding or removing it to each of the stages, specified by apis parameter. apis a list of dictionaries, where each dictionary cont...

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def json(self, start=None): """ :param start: start key in dot notation returns the dict in json format :return: json string version :rtype: string """ if start is not None: data = self.data[start] return json.dumps(self.data, indent=4)

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def save_credentials(self, profile): """ Saves credentials to a dotfile so you can open them grab them later. Parameters ---------- profile: str name for your profile (i.e. "dev", "prod") """ filename = profile_path(S3_PROFILE_ID, profile) cre...

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def notify(self, frame_type, headers=None, body=None): """ Utility function for notifying listeners of incoming and outgoing messages :param str frame_type: the type of message :param dict headers: the map of headers associated with the message :param body: the content of the me...

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def _checkpointLabelFromCheckpointDir(checkpointDir): """Returns a checkpoint label string for the given model checkpoint directory checkpointDir: relative or absolute model checkpoint directory path """ assert checkpointDir.endswith(g_defaultCheckpointExtension) lastSegment = os.path.split(checkpointDir)[1...

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def _pdf(self, phi): """ Evaluate the _unnormalized_ flow PDF. """ pdf = np.inner(self._vn, np.cos(np.outer(phi, self._n))) pdf *= 2. pdf += 1. return pdf

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def _merge_and_bgzip(orig_files, out_file, base_file, ext=""): """Merge a group of gzipped input files into a final bgzipped output. Also handles providing unique names for each input file to avoid collisions on multi-region output. Handles renaming with awk magic from: https://www.biostars.org/p/68477...

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def fit(self, P): """Fit the diagonal matrices in Sinkhorn Knopp's algorithm Parameters ---------- P : 2d array-like Must be a square non-negative 2d array-like object, that is convertible to a numpy array. The matrix must not be equal to 0 and it must have total...

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29.422535

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def respond(text=None, ssml=None, attributes=None, reprompt_text=None, reprompt_ssml=None, end_session=True): """ Build a dict containing a valid response to an Alexa request. If speech output is desired, either of `text` or `ssml` should be specified. :param text: Plain text speech output...

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def encode( self, word, language_arg=0, name_mode='gen', match_mode='approx', concat=False, filter_langs=False, ): """Return the Beider-Morse Phonetic Matching encoding(s) of a term. Parameters ---------- word : str ...

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def mime_type(self, type_: Optional[MimeType] = None) -> str: """Get a random mime type from list. :param type_: Enum object MimeType. :return: Mime type. """ key = self._validate_enum(item=type_, enum=MimeType) types = MIME_TYPES[key] return self.random.choice(t...

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def rst_table(data, schema=None): """ Creates a reStructuredText simple table (list of strings) from a list of lists. """ # Process multi-rows (replaced by rows with empty columns when needed) pdata = [] for row in data: prow = [el if isinstance(el, list) else [el] for el in row] pdata.extend(pr f...

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def power(maf=0.5,beta=0.1, N=100, cutoff=5e-8): """ estimate power for a given allele frequency, effect size beta and sample size N Assumption: z-score = beta_ML distributed as p(0) = N(0,1.0(maf*(1-maf)*N))) under the null hypothesis the actual beta_ML is distributed as p(alt) = N( beta , 1.0/(maf*(1-maf)N) )...

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31.244444

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def cli(out_fmt, input, output): """Converts text.""" _input = StringIO() for l in input: try: _input.write(str(l)) except TypeError: _input.write(bytes(l, 'utf-8')) _input = seria.load(_input) _out = (_input.dump(out_fmt)) output.write(_out)

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26.909091

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def fsn2text(path, strict=False): """ Args: path (fsnative): The path to convert strict (bool): Fail in case the conversion is not reversible Returns: `text` Raises: TypeError: In case no `fsnative` has been passed ValueError: In case ``strict`` was True and the c...

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def _partial_corr(self, x=None, y=None, covar=None, x_covar=None, y_covar=None, tail='two-sided', method='pearson'): """Partial and semi-partial correlation.""" stats = partial_corr(data=self, x=x, y=y, covar=covar, x_covar=x_covar, y_covar=y_covar, tail=tail, method=m...

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56.333333

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def check_complete(task, out_queue): """ Checks if task is complete, puts the result to out_queue. """ logger.debug("Checking if %s is complete", task) try: is_complete = task.complete() except Exception: is_complete = TracebackWrapper(traceback.format_exc()) out_queue.put((t...

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32.9

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def openconfig_interfaces(device_name=None): ''' .. versionadded:: 2019.2.0 Return a dictionary structured as standardised in the `openconfig-interfaces <http://ops.openconfig.net/branches/master/openconfig-interfaces.html>`_ YANG model, containing physical and configuration data available in Netbo...

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def recursive_division(self, cells, min_size, width, height, x=0, y=0, depth=0): """ Recursive division: 1. Split room randomly 1a. Dodge towards larger half if in doorway 2. Place doorway randomly 3. Repeat for each half """ assert isi...

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def teardown(): """Remove integration""" if not self._has_been_setup: return deregister_plugins() deregister_host() if self._has_menu: remove_from_filemenu() self._has_menu = False self._has_been_setup = False print("pyblish: Integration torn down successfully")

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def download(download_info): """Module method for downloading from S3 This public module method takes a key and the full path to the destination directory, assumes that the args have been validated by the public caller methods, and attempts to download the specified key to the dest_dir. :para...

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39.885714

20.8

def get_serial_ports_list(): """ Lists serial port names :raises EnvironmentError: On unsupported or unknown platforms :returns: A list of the serial ports available on the system """ if sys.platform.startswith('win'): ports = ['COM%s' % (i + 1) for i in rang...

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34.294118

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def _vpcs_path(self): """ Returns the VPCS executable path. :returns: path to VPCS """ search_path = self._manager.config.get_section_config("VPCS").get("vpcs_path", "vpcs") path = shutil.which(search_path) # shutil.which return None if the path doesn't exists ...

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29.076923

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def process_event(self, event_name: str, data: dict) -> None: """ Process event after epoch Args: event_name: whether event is send after epoch or batch. Set of values: ``"after_epoch", "after_batch"`` data: event data (dictionary) Returns: ...

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34.8125

17.0625

def user_absent(name, profile=None, **connection_args): ''' Ensure that the keystone user is absent. name The name of the user that should not exist ''' ret = {'name': name, 'changes': {}, 'result': True, 'comment': 'User "{0}" is already absent'.format(name...

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34.407407

21

def compute_overlayable_zorders(obj, path=[]): """ Traverses an overlayable composite container to determine which objects are associated with specific (Nd)Overlay layers by z-order, making sure to take DynamicMap Callables into account. Returns a mapping between the zorders of each layer and a ...

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42.824324

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def newline(self): """Effects a newline by moving the cursor down and clearing""" self.write(self.term.move_down) self.write(self.term.clear_bol)

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41.5

6

def display_name(self): """Calculates the display name for a room.""" if self.name: return self.name elif self.canonical_alias: return self.canonical_alias # Member display names without me members = [u.get_display_name(self) for u in self.get_joined_memb...

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36.095238

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def filter_matrix_columns(A, theta): """Filter each column of A with tol. i.e., drop all entries in column k where abs(A[i,k]) < tol max( abs(A[:,k]) ) Parameters ---------- A : sparse_matrix theta : float In range [0,1) and defines drop-tolerance used to filter the columns ...

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31.506494

19.805195

def designPrimers(p3_args, input_log=None, output_log=None, err_log=None): ''' Return the raw primer3_core output for the provided primer3 args. Returns an ordered dict of the boulderIO-format primer3 output file ''' sp = subprocess.Popen([pjoin(PRIMER3_HOME, 'primer3_core')], ...

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41

19

def filter_rep_set(inF, otuSet): """ Parse the rep set file and remove all sequences not associated with unique OTUs. :@type inF: file :@param inF: The representative sequence set :@rtype: list :@return: The set of sequences associated with unique OTUs """ seqs = [] for record ...

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25.875

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def run_sorter(sorter_name_or_class, recording, output_folder=None, delete_output_folder=False, grouping_property=None, parallel=False, debug=False, **params): """ Generic function to run a sorter via function approach. 2 Usage with name or class: by name: >>> sorting = run_sorte...

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34.137931

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def getWordList(ipFile, delim): """ extract a unique list of words and have line numbers that word appears """ indexedWords = {} totWords = 0 totLines = 0 with codecs.open(ipFile, "r",encoding='utf-8', errors='replace') as f: for line in f: totLines = totLines + 1 ...

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39.105263

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def parse_time_specification(units, dt=None, n_steps=None, nsteps=None, t1=None, t2=None, t=None): """ Return an array of times given a few combinations of kwargs that are accepted -- see below. Parameters ---------- dt, n_steps[, t1] : (numeric, int[, numeric]) A fixed timestep dt and ...

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30.94898

21.214286

def public_ip_address_get(name, resource_group, **kwargs): ''' .. versionadded:: 2019.2.0 Get details about a specific public IP address. :param name: The name of the public IP address to query. :param resource_group: The resource group name assigned to the public IP address. CLI Exa...

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26.235294

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def create_joints(self): '''Traverse the bone hierarchy and create physics joints.''' stack = ['root'] while stack: parent = stack.pop() for child in self.hierarchy.get(parent, ()): stack.append(child) if parent not in self.bones: ...

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47.375

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def clean(self, value): """ Convert the value's type and run validation. Validation errors from to_python and validate are propagated. The correct value is returned if no error is raised. """ value = self.to_python(value) self.validate(value) return value

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34.555556

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def fun_inverse(fun=None, y=0, x0=None, args=(), disp=False, method='Nelder-Mead', **kwargs): r"""Find the threshold level that accomplishes the desired specificity Call indicated function repeatedly to find answer to the inverse function evaluation Arguments: fun (function): function to be calculate ...

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49.942857

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def min_value(self): """ The minimum pixel value of the ``data`` within the source segment. """ if self._is_completely_masked: return np.nan * self._data_unit else: return np.min(self.values)

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25.5

14.3

def _DiscoverElementTypeFromLocalname(self, type_localname): """Searches all namespaces for a type by name. Args: type_localname: The name of the type. Returns: A fully qualified SOAP type with the specified name. Raises: A zeep.exceptions.LookupError if the type cannot be found in ...

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27.884615

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def delete_group(group_name, region=None, key=None, keyid=None, profile=None): ''' Delete a group policy. CLI Example:: .. code-block:: bash salt myminion boto_iam.delete_group mygroup ''' conn = _get_conn(region=region, key=key, keyid=keyid, profile=profile) ...

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27.222222

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def wrapHeart(service): """Wrap a service in a MultiService with a heart""" master = taservice.MultiService() service.setServiceParent(master) maybeAddHeart(master) return master

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32.166667

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def groupby_count(i, key=None, force_keys=None): """ Aggregate iterator values into buckets based on how frequently the values appear. Example:: >>> list(groupby_count([1, 1, 1, 2, 3])) [(1, 3), (2, 1), (3, 1)] """ counter = defaultdict(lambda: 0) if not key: key = lamb...

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def get_status(app, repo_config, repo_name, sha): """Gets the status of a commit. .. note:: ``repo_name`` might not ever be anything other than ``repo_config['github_repo']``. :param app: Flask app for leeroy :param repo_config: configuration for the repo :param repo_name: The name...

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def new_code_block(self, **kwargs): """Create a new code block.""" proto = {'content': '', 'type': self.code, 'IO': '', 'attributes': ''} proto.update(**kwargs) return proto

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def _upload_to_gcs(self, files_to_upload): """ Upload all of the file splits (and optionally the schema .json file) to Google cloud storage. """ hook = GoogleCloudStorageHook( google_cloud_storage_conn_id=self.google_cloud_storage_conn_id, delegate_to=self...

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def create(input, template, field, outdir, prefix, otype, command, index, dpi, verbose, unicode_support): """Use docstamp to create documents from the content of a CSV file or a Google Spreadsheet. Examples: \n docstamp create -i badge.csv -t badge_template.svg -o badges docstamp create ...

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def as_a_dict(self): """ Displays the index as a dictionary. This includes the design document id, index name, index type, and index definition. :returns: Dictionary representation of the index as a dictionary """ index_dict = { 'ddoc': self._ddoc_id, ...

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def negotiate_sasl(transport, xmlstream, sasl_providers, negotiation_timeout, jid, features): """ Perform SASL authentication on the given :class:`.protocol.XMLStream` `stream`. `transport` must be the :class:`asyncio.Transport` over which the `st...

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def append(self, transitions, rows=None): """Append a batch of transitions to rows of the memory. Args: transitions: Tuple of transition quantities with batch dimension. rows: Episodes to append to, defaults to all. Returns: Operation. """ rows = tf.range(self._capacity) if rows ...

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def color(self) -> str: """Get a random name of color. :return: Color name. :Example: Red. """ colors = self._data['color'] return self.random.choice(colors)

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21

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def extractall(self, directory, auto_create_dir=False, patool_path=None): ''' :param directory: directory to extract to :param auto_create_dir: auto create directory :param patool_path: the path to the patool backend ''' log.debug('extracting %s into %s (backend=%s)', sel...

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def _get_indexable_sentences(document): """ Parameters ---------- document : Text Article, book, paragraph, chapter, etc. Anything that is considered a document on its own. Yields ------ str json representation of elasticsearch type sentence ...

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def filter_scanline(type, line, fo, prev=None): """Apply a scanline filter to a scanline. `type` specifies the filter type (0 to 4); `line` specifies the current (unfiltered) scanline as a sequence of bytes; `prev` specifies the previous (unfiltered) scanline as a sequence of bytes. `fo` specifies the ...

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def _compute_distance(cls, dists, coeffs): """ Compute third term of equation (1) on p. 1200: ``b3 * log(sqrt(Rjb ** 2 + b4 ** 2))`` """ return coeffs['b3']*np.log10(np.sqrt(dists.rjb**2. + coeffs['b4']**2.))

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def ask(message, options): """Ask the message interactively, with the given possible responses""" while 1: if os.environ.get('PIP_NO_INPUT'): raise Exception('No input was expected ($PIP_NO_INPUT set); question: %s' % message) response = raw_input(message) response = response...

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def com_google_fonts_check_name_license(ttFont, license): """Check copyright namerecords match license file.""" from fontbakery.constants import PLACEHOLDER_LICENSING_TEXT failed = False placeholder = PLACEHOLDER_LICENSING_TEXT[license] entry_found = False for i, nameRecord in enumerate(ttFont["name"].names...

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def add_line_error(self, line_data, error_info, log_level=logging.ERROR): """Helper function to record and log an error message :param line_data: dict :param error_info: dict :param logger: :param log_level: int :return: """ if not error_info: return ...

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def load_data_old(self): """ Loads time series of 2D data grids from each opened file. The code handles loading a full time series from one file or individual time steps from multiple files. Missing files are supported. """ units = "" if len(self.file_objects) ==...

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53.225

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def map_sid2sub(self, sid, sub): """ Store the connection between a Session ID and a subject ID. :param sid: Session ID :param sub: subject ID """ self.set('sid2sub', sid, sub) self.set('sub2sid', sub, sid)

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def read(fname): """Quick way to read a file content.""" content = None with open(os.path.join(here, fname)) as f: content = f.read() return content

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def read_xdg_config_home(name, extension): """ Read from file found in XDG-specified configuration home directory, expanding to ``${HOME}/.config/name.extension`` by default. Depends on ``XDG_CONFIG_HOME`` or ``HOME`` environment variables. :param name: application or configuration set name :pa...

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50.25

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def _check_load_paths(load_path): ''' Checks the validity of the load_path, returns a sanitized version with invalid paths removed. ''' if load_path is None or not isinstance(load_path, six.string_types): return None _paths = [] for _path in load_path.split(':'): if os.path...

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26.7

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def NewType(name, tp): """NewType creates simple unique types with almost zero runtime overhead. NewType(name, tp) is considered a subtype of tp by static type checkers. At runtime, NewType(name, tp) returns a dummy function that simply returns its argument. Usage:: UserId = NewType('UserId', i...

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27.16

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def _tick(self): """Write progress info and move cursor to beginning of line.""" if (self.verbose >= 3 and not IS_REDIRECTED) or self.options.get("progress"): stats = self.get_stats() prefix = DRY_RUN_PREFIX if self.dry_run else "" sys.stdout.write( "{...

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def equivalent_sites(self, scaled_positions, ondublicates='error', symprec=1e-3): """Returns the scaled positions and all their equivalent sites. Parameters: scaled_positions: list | array List of non-equivalent sites given in unit cell coordinates. ...

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def _get_value(self, node, scope, ctxt, stream): """Return the value of the node. It is expected to be either an AST.ID instance or a constant :node: TODO :returns: TODO """ res = self._handle_node(node, scope, ctxt, stream) if isinstance(res, fields.Field): ...

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def standings(self): '''Get standings from the community's account''' headers = {"Content-type": "application/x-www-form-urlencoded","Accept": "text/plain","User-Agent": user_agent} req = self.session.get('http://'+self.domain+'/standings.phtml',headers=headers).content soup = BeautifulS...

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def commit(cls, client=None): """Commit everything from datapoints via the client. :param client: InfluxDBClient instance for writing points to InfluxDB. :attention: any provided client will supersede the class client. :return: result of client.write_points. """ if not c...

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def info( self, path="/", # type: Text namespaces=None, # type: Optional[Collection[Text]] **kwargs # type: Any ): # type: (...) -> Iterator[Tuple[Text, Info]] """Walk a filesystem, yielding path and `Info` of resources. Arguments: path (str): ...

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def serialize(cls, obj, buf, lineLength, validate): """ Apple's Address Book is *really* weird with images, it expects base64 data to have very specific whitespace. It seems Address Book can handle PHOTO if it's not wrapped, so don't wrap it. """ if wacky_apple_photo_ser...

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def calculate_elem_per_kb(max_chunk_kb, matrix_dtype): """ Calculates the number of elem per kb depending on the max chunk size set. Input: - max_chunk_kb (int, default=1024): The maximum number of KB a given chunk will occupy - matrix_dtype (numpy dtype, default=numpy.float32): Storage d...

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46.9

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