kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def pgpdf(omega, b, psi, trunc=200): """ Approximate the density log PG(omega \| b, psi) using a truncation of the density written as an infinite sum. :param omega: point at which to evaluate density :param b: first parameter of PG :param psi: tilting of PG :param trunc: number of terms in...	[ "def", "pgpdf", "(", "omega", ",", "b", ",", "psi", ",", "trunc", "=", "200", ")", ":", "ns", "=", "np", ".", "arange", "(", "trunc", ")", "psi_ns", "=", "np", ".", "array", "(", "[", "_psi_n", "(", "omega", ",", "n", ",", "b", ")", "for", ...	28.111111	15.222222
def __choices2tkvalues(self, choices): """choices: iterable of key, value pairs""" values = [] for k, v in choices: values.append(v) return values	[ "def", "__choices2tkvalues", "(", "self", ",", "choices", ")", ":", "values", "=", "[", "]", "for", "k", ",", "v", "in", "choices", ":", "values", ".", "append", "(", "v", ")", "return", "values" ]	30.833333	11
def path_fraction_id_offset(points, fraction, relative_offset=False): '''Find the segment which corresponds to the fraction of the path length along the piecewise linear curve which is constructed from the set of points. Args: points: an iterable of indexable objects with indices 0, 1, ...	[ "def", "path_fraction_id_offset", "(", "points", ",", "fraction", ",", "relative_offset", "=", "False", ")", ":", "if", "not", "(", "0.", "<=", "fraction", "<=", "1.0", ")", ":", "raise", "ValueError", "(", "\"Invalid fraction: %.3f\"", "%", "fraction", ")", ...	38.461538	17.230769
def getMaximinScores(profile): """ Returns a dictionary that associates integer representations of each candidate with their Copeland score. :ivar Profile profile: A Profile object that represents an election profile. """ # Currently, we expect the profile to contain complete ordering over can...	[ "def", "getMaximinScores", "(", "profile", ")", ":", "# Currently, we expect the profile to contain complete ordering over candidates. Ties are", "# allowed however.", "elecType", "=", "profile", ".", "getElecType", "(", ")", "if", "elecType", "!=", "\"soc\"", "and", "elecTyp...	38.066667	25.2
def _check_smart_storage_message(self): """Check for smart storage message. :returns: result, raid_message """ ssc_mesg = self.smart_storage_config_message result = True raid_message = "" for element in ssc_mesg: if "Success" not in element['MessageId...	[ "def", "_check_smart_storage_message", "(", "self", ")", ":", "ssc_mesg", "=", "self", ".", "smart_storage_config_message", "result", "=", "True", "raid_message", "=", "\"\"", "for", "element", "in", "ssc_mesg", ":", "if", "\"Success\"", "not", "in", "element", ...	33.076923	10.461538
def complete_object_value( exe_context, # type: ExecutionContext return_type, # type: GraphQLObjectType field_asts, # type: List[Field] info, # type: ResolveInfo path, # type: List[Union[int, str]] result, # type: Any ): # type: (...) -> Dict[str, Any] """ Complete an Object va...	[ "def", "complete_object_value", "(", "exe_context", ",", "# type: ExecutionContext", "return_type", ",", "# type: GraphQLObjectType", "field_asts", ",", "# type: List[Field]", "info", ",", "# type: ResolveInfo", "path", ",", "# type: List[Union[int, str]]", "result", ",", "# ...	36.130435	17.608696
def validate(self, value): """ Applies the validation criteria. Returns value, new value, or None if invalid. """ try: coord.Angle(value, unit=self.unit) return value except ValueError: return None	[ "def", "validate", "(", "self", ",", "value", ")", ":", "try", ":", "coord", ".", "Angle", "(", "value", ",", "unit", "=", "self", ".", "unit", ")", "return", "value", "except", "ValueError", ":", "return", "None" ]	27.2	10.8
def question_field(self, move_x, move_y): """Question a grid by given position.""" field_status = self.info_map[move_y, move_x] # a questioned or undiscovered field if field_status != 10 and (field_status == 9 or field_status == 11): self.info_map[move_y, move_x] = 10	[ "def", "question_field", "(", "self", ",", "move_x", ",", "move_y", ")", ":", "field_status", "=", "self", ".", "info_map", "[", "move_y", ",", "move_x", "]", "# a questioned or undiscovered field", "if", "field_status", "!=", "10", "and", "(", "field_status", ...	43.857143	14.142857
def DataPath(): """ Return the default path for fit data h5 files""" return os.path.abspath('%s/data'%(os.path.dirname( \ os.path.realpath(__file__))))	[ "def", "DataPath", "(", ")", ":", "return", "os", ".", "path", ".", "abspath", "(", "'%s/data'", "%", "(", "os", ".", "path", ".", "dirname", "(", "os", ".", "path", ".", "realpath", "(", "__file__", ")", ")", ")", ")" ]	41	11
def _mount(device): ''' Mount the device in a temporary place. ''' dest = tempfile.mkdtemp() res = __states__['mount.mounted'](dest, device=device, fstype='btrfs', opts='subvol=/', persist=False) if not res['result']: log.error('Cannot mount device %...	[ "def", "_mount", "(", "device", ")", ":", "dest", "=", "tempfile", ".", "mkdtemp", "(", ")", "res", "=", "__states__", "[", "'mount.mounted'", "]", "(", "dest", ",", "device", "=", "device", ",", "fstype", "=", "'btrfs'", ",", "opts", "=", "'subvol=/'"...	32.5	22.166667
def switch_format(self, gsr): """ Convert the Wharton GSR format into the studyspaces API format. """ if "error" in gsr: return gsr categories = { "cid": 1, "name": "Huntsman Hall", "rooms": [] } for time in gsr["times"]: ...	[ "def", "switch_format", "(", "self", ",", "gsr", ")", ":", "if", "\"error\"", "in", "gsr", ":", "return", "gsr", "categories", "=", "{", "\"cid\"", ":", "1", ",", "\"name\"", ":", "\"Huntsman Hall\"", ",", "\"rooms\"", ":", "[", "]", "}", "for", "time"...	42.627907	14
def _key_from_json(self, data): """ Internal method, for creating the Key object. """ key = Key() key.algorithm = data["Algorithm"] key.cipher_mode = data["CipherMode"] key.expiration = datetime.strptime(data["Expiration"].split(".")[0], ...	[ "def", "_key_from_json", "(", "self", ",", "data", ")", ":", "key", "=", "Key", "(", ")", "key", ".", "algorithm", "=", "data", "[", "\"Algorithm\"", "]", "key", ".", "cipher_mode", "=", "data", "[", "\"CipherMode\"", "]", "key", ".", "expiration", "="...	35.214286	11.642857
def deauthorize_application(request): """ When a user deauthorizes an application, Facebook sends a HTTP POST request to the application's "deauthorization callback" URL. This view picks up on requests of this sort and marks the corresponding users as unauthorized. """ if request.facebook: ...	[ "def", "deauthorize_application", "(", "request", ")", ":", "if", "request", ".", "facebook", ":", "user", "=", "User", ".", "objects", ".", "get", "(", "facebook_id", "=", "request", ".", "facebook", ".", "signed_request", ".", "user", ".", "id", ")", "...	31.823529	22.176471
def _load_mnist_dataset(shape, path, name='mnist', url='http://yann.lecun.com/exdb/mnist/'): """A generic function to load mnist-like dataset. Parameters: ---------- shape : tuple The shape of digit images. path : str The path that the data is downloaded to. name : str T...	[ "def", "_load_mnist_dataset", "(", "shape", ",", "path", ",", "name", "=", "'mnist'", ",", "url", "=", "'http://yann.lecun.com/exdb/mnist/'", ")", ":", "path", "=", "os", ".", "path", ".", "join", "(", "path", ",", "name", ")", "# Define functions for loading ...	46.377049	22.57377
def _invalidates_cache(f): """ Decorator for rruleset methods which may invalidate the cached length. """ def inner_func(self, args, kwargs): rv = f(self, args, **kwargs) self._invalidate_cache() return rv return inner_func	[ "def", "_invalidates_cache", "(", "f", ")", ":", "def", "inner_func", "(", "self", ",", "", "args", ",", "", "", "kwargs", ")", ":", "rv", "=", "f", "(", "self", ",", "", "args", ",", "", "", "kwargs", ")", "self", ".", "_invalidate_cache", ...	22.166667	15.833333
def create_service(self, customer_id, name, publish_key=None, comment=None): """Create a service.""" body = self._formdata({ "customer_id": customer_id, "name": name, "publish_key": publish_key, "comment": comment, }, FastlyService.FIELDS) content = self._fetch("/service", method="POST", body=body) ...	[ "def", "create_service", "(", "self", ",", "customer_id", ",", "name", ",", "publish_key", "=", "None", ",", "comment", "=", "None", ")", ":", "body", "=", "self", ".", "_formdata", "(", "{", "\"customer_id\"", ":", "customer_id", ",", "\"name\"", ":", "...	34.8	15.1
def weld_compare(array, scalar, operation, weld_type): """Applies comparison operation between each element in the array with scalar. Parameters ---------- array : numpy.ndarray or WeldObject Input data. scalar : {int, float, str, bool, bytes_} Value to compare with; must be same ty...	[ "def", "weld_compare", "(", "array", ",", "scalar", ",", "operation", ",", "weld_type", ")", ":", "obj_id", ",", "weld_obj", "=", "create_weld_object", "(", "array", ")", "if", "not", "isinstance", "(", "scalar", ",", "str", ")", ":", "scalar", "=", "to_...	31.863636	20.363636
def annotate_powerlaw(text, exp, startx, starty, width=None, rx=0.5, ry=0.5, kwargs): r''' Added a label to the middle of a power-law annotation (see ``goosempl.plot_powerlaw``). :arguments: exp (``float``) The power-law exponent. startx, starty (``float``) Start coordinates. :options: ...	[ "def", "annotate_powerlaw", "(", "text", ",", "exp", ",", "startx", ",", "starty", ",", "width", "=", "None", ",", "rx", "=", "0.5", ",", "ry", "=", "0.5", ",", "", "", "kwargs", ")", ":", "# get options/defaults", "endx", "=", "kwargs", ".", "pop"...	27.696203	25.443038
def find_or_create(self, constructor, props, *, comp=None): """Looks for a model taht matches the given dictionary constraints. If it is not found, a new model of the given type is created and saved to the database, then returned. """ model = self.find_model(constructor, comp or props) if model is N...	[ "def", "find_or_create", "(", "self", ",", "constructor", ",", "props", ",", "*", ",", "comp", "=", "None", ")", ":", "model", "=", "self", ".", "find_model", "(", "constructor", ",", "comp", "or", "props", ")", "if", "model", "is", "None", ":", "mod...	44.333333	14.777778
def to_dict(self): """Returns attributes formatted as a dictionary.""" d = {'id': self.id, 'classes': self.classes} d.update(self.kvs) return d	[ "def", "to_dict", "(", "self", ")", ":", "d", "=", "{", "'id'", ":", "self", ".", "id", ",", "'classes'", ":", "self", ".", "classes", "}", "d", ".", "update", "(", "self", ".", "kvs", ")", "return", "d" ]	34.2	14.4
def handle_bad_update(operation, ret): '''report error for bad update''' print("Error " + operation) sys.exit('Return code: ' + str(ret.status_code) + ' Error: ' + ret.text)	[ "def", "handle_bad_update", "(", "operation", ",", "ret", ")", ":", "print", "(", "\"Error \"", "+", "operation", ")", "sys", ".", "exit", "(", "'Return code: '", "+", "str", "(", "ret", ".", "status_code", ")", "+", "' Error: '", "+", "ret", ".", "text"...	45.5	12.5
def getOccurrenceOfCharAtIndex(self, sym, index): ''' This functions gets the FM-index value of a character at the specified position @param sym - the character to find the occurrence level @param index - the index we want to find the occurrence level at @return - the number of o...	[ "def", "getOccurrenceOfCharAtIndex", "(", "self", ",", "sym", ",", "index", ")", ":", "#sampling method", "#get the bin we occupy", "binID", "=", "index", ">>", "self", ".", "bitPower", "#these two methods seem to have the same approximate run time", "if", "(", "binID", ...	45.941176	25
def _search(self, model, condition=None, search_field='name', value_field='id', label_field=None, pagination=True): """ Default search function :param search_field: Used for search field, default is 'name' :param value_field: Used for id field, default is id :para...	[ "def", "_search", "(", "self", ",", "model", ",", "condition", "=", "None", ",", "search_field", "=", "'name'", ",", "value_field", "=", "'id'", ",", "label_field", "=", "None", ",", "pagination", "=", "True", ")", ":", "from", "uliweb", "import", "json"...	40.631579	18.736842
def get_value(self,column=None,keyValue=None,table=None,verbose=None): """ Returns the value from a cell as specified by row and column ids. :param column (string, optional): Specifies the name of a column in the tab le :param keyValue (string, optional): Specifies a row of ...	[ "def", "get_value", "(", "self", ",", "column", "=", "None", ",", "keyValue", "=", "None", ",", "table", "=", "None", ",", "verbose", "=", "None", ")", ":", "PARAMS", "=", "set_param", "(", "[", "'column'", ",", "'keyValue'", ",", "'table'", "]", ","...	48.823529	29.764706
def get_definition(self, name): """Get definitions by name.""" for definition in self.definitions: if definition.name == name: return definition	[ "def", "get_definition", "(", "self", ",", "name", ")", ":", "for", "definition", "in", "self", ".", "definitions", ":", "if", "definition", ".", "name", "==", "name", ":", "return", "definition" ]	36.8	4
def inbox_count_for(user): """ returns the number of unread messages for the given user but does not mark them seen """ return Message.objects.filter(recipient=user, read_at__isnull=True, recipient_deleted_at__isnull=True).count()	[ "def", "inbox_count_for", "(", "user", ")", ":", "return", "Message", ".", "objects", ".", "filter", "(", "recipient", "=", "user", ",", "read_at__isnull", "=", "True", ",", "recipient_deleted_at__isnull", "=", "True", ")", ".", "count", "(", ")" ]	40.833333	23.833333
def _label_generalized(self, node): """Helper method that labels the nodes of GST with indexes of strings found in their descendants. """ if node.is_leaf(): x = {self._get_word_start_index(node.idx)} else: x = {n for ns in node.transition_links for n in ns...	[ "def", "_label_generalized", "(", "self", ",", "node", ")", ":", "if", "node", ".", "is_leaf", "(", ")", ":", "x", "=", "{", "self", ".", "_get_word_start_index", "(", "node", ".", "idx", ")", "}", "else", ":", "x", "=", "{", "n", "for", "ns", "i...	40.777778	12.777778
def isolate_region(sequences, start, end, gap_char='-'): """ Replace regions before and after start:end with gap chars """ # Check arguments if end <= start: raise ValueError("start of slice must precede end ({0} !> {1})".format( end, start)) for sequence in sequences: ...	[ "def", "isolate_region", "(", "sequences", ",", "start", ",", "end", ",", "gap_char", "=", "'-'", ")", ":", "# Check arguments", "if", "end", "<=", "start", ":", "raise", "ValueError", "(", "\"start of slice must precede end ({0} !> {1})\"", ".", "format", "(", ...	32.823529	15.176471
def max_await_time_ms(self, max_await_time_ms): """Specifies a time limit for a getMore operation on a :attr:`~pymongo.cursor.CursorType.TAILABLE_AWAIT` cursor. For all other types of cursor max_await_time_ms is ignored. Raises :exc:`TypeError` if `max_await_time_ms` is not an integer o...	[ "def", "max_await_time_ms", "(", "self", ",", "max_await_time_ms", ")", ":", "if", "(", "not", "isinstance", "(", "max_await_time_ms", ",", "integer_types", ")", "and", "max_await_time_ms", "is", "not", "None", ")", ":", "raise", "TypeError", "(", "\"max_await_t...	40.37037	24.111111
def status_to_string(cls, status): """ Converts a message status to a string. :param status: Status to convert (p yqode.core.modes.CheckerMessages) :return: The status string. :rtype: str """ strings = {CheckerMessages.INFO: "Info", CheckerMess...	[ "def", "status_to_string", "(", "cls", ",", "status", ")", ":", "strings", "=", "{", "CheckerMessages", ".", "INFO", ":", "\"Info\"", ",", "CheckerMessages", ".", "WARNING", ":", "\"Warning\"", ",", "CheckerMessages", ".", "ERROR", ":", "\"Error\"", "}", "re...	34.583333	13.083333
def to_headers(self, span_context): """Convert a SpanContext object to B3 propagation headers. :type span_context: :class:`~opencensus.trace.span_context.SpanContext` :param span_context: SpanContext object. :rtype: dict :returns: B3 propagation headers. """...	[ "def", "to_headers", "(", "self", ",", "span_context", ")", ":", "if", "not", "span_context", ".", "span_id", ":", "span_id", "=", "INVALID_SPAN_ID", "else", ":", "span_id", "=", "span_context", ".", "span_id", "sampled", "=", "span_context", ".", "trace_optio...	28.173913	17.26087
def toggle_help(self, event, mode=None): """ Show/hide help message on help button click. """ # if mode == 'open', show no matter what. # if mode == 'close', close. otherwise, change state btn = self.toggle_help_btn shown = self.help_msg_boxsizer.GetStaticBox().I...	[ "def", "toggle_help", "(", "self", ",", "event", ",", "mode", "=", "None", ")", ":", "# if mode == 'open', show no matter what.", "# if mode == 'close', close. otherwise, change state", "btn", "=", "self", ".", "toggle_help_btn", "shown", "=", "self", ".", "help_msg_bo...	37.625	10.125
def create(self, friendly_name=values.unset, apn_credential_sid=values.unset, gcm_credential_sid=values.unset, messaging_service_sid=values.unset, facebook_messenger_page_id=values.unset, default_apn_notification_protocol_version=values.unset, default_gcm_noti...	[ "def", "create", "(", "self", ",", "friendly_name", "=", "values", ".", "unset", ",", "apn_credential_sid", "=", "values", ".", "unset", ",", "gcm_credential_sid", "=", "values", ".", "unset", ",", "messaging_service_sid", "=", "values", ".", "unset", ",", "...	56.68	29.8
def build_sort(): '''Build sort query paramter from kwargs''' sorts = request.args.getlist('sort') sorts = [sorts] if isinstance(sorts, basestring) else sorts sorts = [s.split(' ') for s in sorts] return [{SORTS[s]: d} for s, d in sorts if s in SORTS]	[ "def", "build_sort", "(", ")", ":", "sorts", "=", "request", ".", "args", ".", "getlist", "(", "'sort'", ")", "sorts", "=", "[", "sorts", "]", "if", "isinstance", "(", "sorts", ",", "basestring", ")", "else", "sorts", "sorts", "=", "[", "s", ".", "...	44.333333	12
def until_protocol(self, timeout=None): """Return future that resolves after receipt of katcp protocol info. If the returned future resolves, the server's protocol information is available in the ProtocolFlags instance self.protocol_flags. """ t0 = self.ioloop.time() yi...	[ "def", "until_protocol", "(", "self", ",", "timeout", "=", "None", ")", ":", "t0", "=", "self", ".", "ioloop", ".", "time", "(", ")", "yield", "self", ".", "until_running", "(", "timeout", "=", "timeout", ")", "t1", "=", "self", ".", "ioloop", ".", ...	38.375	17.8125
def changelog(ctx, check, version, old_version, initial, quiet, dry_run): """Perform the operations needed to update the changelog. This method is supposed to be used by other tasks and not directly. """ if check not in get_valid_checks(): abort('Check `{}` is not an Agent-based Integration'.fo...	[ "def", "changelog", "(", "ctx", ",", "check", ",", "version", ",", "old_version", ",", "initial", ",", "quiet", ",", "dry_run", ")", ":", "if", "check", "not", "in", "get_valid_checks", "(", ")", ":", "abort", "(", "'Check `{}` is not an Agent-based Integratio...	36.607843	24.313725
def vectorize_range(values): """ This function is for url encoding. Takes a value or a tuple or list of tuples and returns a single result, tuples are joined by "," if necessary, elements in tuple are joined by '_' """ if isinstance(values, tuple): return '_'.join(str(i) for i in values)...	[ "def", "vectorize_range", "(", "values", ")", ":", "if", "isinstance", "(", "values", ",", "tuple", ")", ":", "return", "'_'", ".", "join", "(", "str", "(", "i", ")", "for", "i", "in", "values", ")", "if", "isinstance", "(", "values", ",", "list", ...	43.307692	15.615385
def backoff( max_tries=constants.BACKOFF_DEFAULT_MAXTRIES, delay=constants.BACKOFF_DEFAULT_DELAY, factor=constants.BACKOFF_DEFAULT_FACTOR, exceptions=None): """Implements an exponential backoff decorator which will retry decorated function upon given exceptions. This implementati...	[ "def", "backoff", "(", "max_tries", "=", "constants", ".", "BACKOFF_DEFAULT_MAXTRIES", ",", "delay", "=", "constants", ".", "BACKOFF_DEFAULT_DELAY", ",", "factor", "=", "constants", ".", "BACKOFF_DEFAULT_FACTOR", ",", "exceptions", "=", "None", ")", ":", "if", "...	41.185185	24
def decode(string): """Decode Erlang external term.""" if not string: raise IncompleteData(string) if string[0] != 131: raise ValueError("unknown protocol version: %r" % string[0]) if string[1:2] == b'P': # compressed term if len(string) < 16: raise Incomplete...	[ "def", "decode", "(", "string", ")", ":", "if", "not", "string", ":", "raise", "IncompleteData", "(", "string", ")", "if", "string", "[", "0", "]", "!=", "131", ":", "raise", "ValueError", "(", "\"unknown protocol version: %r\"", "%", "string", "[", "0", ...	40.047619	13.380952
def _pack(self, fname, encoding): """Save workflow with ``--pack`` option This means that al tools and subworkflows are included in the workflow file that is created. A packed workflow cannot be loaded and used in scriptcwl. """ (fd, tmpfile) = tempfile.mkstemp() ...	[ "def", "_pack", "(", "self", ",", "fname", ",", "encoding", ")", ":", "(", "fd", ",", "tmpfile", ")", "=", "tempfile", ".", "mkstemp", "(", ")", "os", ".", "close", "(", "fd", ")", "try", ":", "self", ".", "save", "(", "tmpfile", ",", "mode", "...	37.833333	21.5
def build_app_loggers(log_level, apps, handlers=None): """ Return a logger dict for app packages with the given log level and no propogation since the apps list is parsed/normalized to be the set of top- level apps. The optional handlers argument is provided so that this pattern of app loggers can be u...	[ "def", "build_app_loggers", "(", "log_level", ",", "apps", ",", "handlers", "=", "None", ")", ":", "# Use 'default' handler provided by DEFAULT_LOGGING config if", "# not supplied.", "if", "handlers", "is", "None", ":", "handlers", "=", "[", "'default'", "]", "# The l...	33.148148	20.481481
def merge(args): """ %prog merge bedfiles > newbedfile Concatenate bed files together. Performing seqid and name changes to avoid conflicts in the new bed file. """ p = OptionParser(merge.__doc__) p.set_outfile() opts, args = p.parse_args(args) if len(args) < 1: sys.exit(no...	[ "def", "merge", "(", "args", ")", ":", "p", "=", "OptionParser", "(", "merge", ".", "__doc__", ")", "p", ".", "set_outfile", "(", ")", "opts", ",", "args", "=", "p", ".", "parse_args", "(", "args", ")", "if", "len", "(", "args", ")", "<", "1", ...	26.227273	15.318182
def fields_to_dict(fields, type_=OrderedDict): """Convert a flat list of key/values into an OrderedDict""" fields_iterator = iter(fields) return type_(zip(fields_iterator, fields_iterator))	[ "def", "fields_to_dict", "(", "fields", ",", "type_", "=", "OrderedDict", ")", ":", "fields_iterator", "=", "iter", "(", "fields", ")", "return", "type_", "(", "zip", "(", "fields_iterator", ",", "fields_iterator", ")", ")" ]	49.5	6.75
def get_invoices_per_page(self, per_page=1000, page=1, params=None): """ Get invoices per page :param per_page: How many objects per page. Default: 1000 :param page: Which page. Default: 1 :param params: Search parameters. Default: {} :return: list """ re...	[ "def", "get_invoices_per_page", "(", "self", ",", "per_page", "=", "1000", ",", "page", "=", "1", ",", "params", "=", "None", ")", ":", "return", "self", ".", "_get_resource_per_page", "(", "resource", "=", "INVOICES", ",", "per_page", "=", "per_page", ","...	40.7	20.5
def generator_to_list(function): """ Wrap a generator function so that it returns a list when called. For example: # Define a generator >>> def mygen(n): ... i = 0 ... while i < n: ... yield i ... i += 1 # This is ...	[ "def", "generator_to_list", "(", "function", ")", ":", "def", "wrapper", "(", "", "args", ",", "", "", "kwargs", ")", ":", "return", "list", "(", "function", "(", "", "args", ",", "", "", "kwargs", ")", ")", "wrapper", ".", "__name__", "=", "...	26.724138	15.758621
def get_authorization_admin_session_for_vault(self, vault_id): """Gets the ``OsidSession`` associated with the authorization admin service for the given vault. arg: vault_id (osid.id.Id): the ``Id`` of the vault return: (osid.authorization.AuthorizationAdminSession) - ``an _a...	[ "def", "get_authorization_admin_session_for_vault", "(", "self", ",", "vault_id", ")", ":", "if", "not", "self", ".", "supports_authorization_admin", "(", ")", ":", "raise", "errors", ".", "Unimplemented", "(", ")", "##", "# Also include check to see if the catalog Id i...	49.73913	20.826087
def parse_cfgstr_list(cfgstr_list, smartcast=True, oldmode=True): r""" Parses a list of items in the format ['var1:val1', 'var2:val2', 'var3:val3'] the '=' character can be used instead of the ':' character if desired TODO: see ut.parse_cfgstr3 Args: cfgstr_list (list): Returns: ...	[ "def", "parse_cfgstr_list", "(", "cfgstr_list", ",", "smartcast", "=", "True", ",", "oldmode", "=", "True", ")", ":", "cfgdict", "=", "{", "}", "for", "item", "in", "cfgstr_list", ":", "if", "item", "==", "''", ":", "continue", "if", "oldmode", ":", "k...	34.92	22.14
def debug(verbose): """Run the experiment locally.""" (id, tmp) = setup_experiment(debug=True, verbose=verbose) # Drop all the tables from the database. db.init_db(drop_all=True) # Switch to the temporary directory. cwd = os.getcwd() os.chdir(tmp) # Load psiTurk configuration. con...	[ "def", "debug", "(", "verbose", ")", ":", "(", "id", ",", "tmp", ")", "=", "setup_experiment", "(", "debug", "=", "True", ",", "verbose", "=", "verbose", ")", "# Drop all the tables from the database.", "db", ".", "init_db", "(", "drop_all", "=", "True", "...	31.974684	21.126582
def respects(g,imp): """ g is an int, where each bit is an attribute implication UV is ternary coded 1 = ∈V, 2 = ∈U, 0 otherwise g and UV have the same number of digits """ if isinstance(g,str): g = int(g,2) if isinstance(imp,int): imp = istr(imp,3,g.bit_length()) V = int...	[ "def", "respects", "(", "g", ",", "imp", ")", ":", "if", "isinstance", "(", "g", ",", "str", ")", ":", "g", "=", "int", "(", "g", ",", "2", ")", "if", "isinstance", "(", "imp", ",", "int", ")", ":", "imp", "=", "istr", "(", "imp", ",", "3",...	31.2	12
def get_subfields(self, datafield, subfield, i1=None, i2=None, exception=False): """ Return content of given `subfield` in `datafield`. Args: datafield (str): Section name (for example "001", "100", "700"). subfield (str): Subfield name (for exampl...	[ "def", "get_subfields", "(", "self", ",", "datafield", ",", "subfield", ",", "i1", "=", "None", ",", "i2", "=", "None", ",", "exception", "=", "False", ")", ":", "if", "len", "(", "datafield", ")", "!=", "3", ":", "raise", "ValueError", "(", "\"`data...	36.617647	24
def render(self, request, template, context): """ Returns a response. By default, this will contain the rendered PDF, but if both ``allow_force_html`` is ``True`` and the querystring ``html=true`` was set it will return a plain HTML. """ if self.allow_force_html and self....	[ "def", "render", "(", "self", ",", "request", ",", "template", ",", "context", ")", ":", "if", "self", ".", "allow_force_html", "and", "self", ".", "request", ".", "GET", ".", "get", "(", "'html'", ",", "False", ")", ":", "html", "=", "get_template", ...	42.857143	15.714286
def tools(self, extra_params=None): """" All Tools in this Space """ return self.api._get_json( SpaceTool, space=self, rel_path=self._build_rel_path('space_tools'), extra_params=extra_params, )	[ "def", "tools", "(", "self", ",", "extra_params", "=", "None", ")", ":", "return", "self", ".", "api", ".", "_get_json", "(", "SpaceTool", ",", "space", "=", "self", ",", "rel_path", "=", "self", ".", "_build_rel_path", "(", "'space_tools'", ")", ",", ...	27.2	10.5
def _is_socket(cls, stream): """Check if the given stream is a socket.""" try: fd = stream.fileno() except ValueError: # If it has no file descriptor, it's not a socket return False sock = socket.fromfd(fd, socket.AF_INET, socket.SOCK_RAW) try...	[ "def", "_is_socket", "(", "cls", ",", "stream", ")", ":", "try", ":", "fd", "=", "stream", ".", "fileno", "(", ")", "except", "ValueError", ":", "# If it has no file descriptor, it's not a socket", "return", "False", "sock", "=", "socket", ".", "fromfd", "(", ...	35.526316	17.210526
def filter_kepler_lcdict(lcdict, filterflags=True, nanfilter='sap,pdc', timestoignore=None): '''This filters the Kepler `lcdict`, removing nans and bad observations. By default, this function removes points in the Kepler LC that hav...	[ "def", "filter_kepler_lcdict", "(", "lcdict", ",", "filterflags", "=", "True", ",", "nanfilter", "=", "'sap,pdc'", ",", "timestoignore", "=", "None", ")", ":", "cols", "=", "lcdict", "[", "'columns'", "]", "# filter all bad LC points as noted by quality flags", "if"...	29.712	22.064
def get_payments(self): """Get all your payments. Returns: list of dicts: payments For each payout in the list, a dict contains the following items: * nmrAmount (`decimal.Decimal`) * usdAmount (`decimal.Decimal`) * tournament (`s...	[ "def", "get_payments", "(", "self", ")", ":", "query", "=", "\"\"\"\n query {\n user {\n payments {\n nmrAmount\n round {\n number\n openTime\n resolveTime\n resolvedGen...	33.583333	15.75
def page(title=None, pageid=None, auto_suggest=True, redirect=True, preload=False): ''' Get a WikipediaPage object for the page with title `title` or the pageid `pageid` (mutually exclusive). Keyword arguments: * title - the title of the page to load * pageid - the numeric pageid of the page to load * a...	[ "def", "page", "(", "title", "=", "None", ",", "pageid", "=", "None", ",", "auto_suggest", "=", "True", ",", "redirect", "=", "True", ",", "preload", "=", "False", ")", ":", "if", "title", "is", "not", "None", ":", "if", "auto_suggest", ":", "results...	38.814815	25.333333
def glymurrc_fname(): """Return the path to the configuration file. Search order: 1) current working directory 2) environ var XDG_CONFIG_HOME 3) $HOME/.config/glymur/glymurrc """ # Current directory. fname = os.path.join(os.getcwd(), 'glymurrc') if os.path.exists(fname)...	[ "def", "glymurrc_fname", "(", ")", ":", "# Current directory.", "fname", "=", "os", ".", "path", ".", "join", "(", "os", ".", "getcwd", "(", ")", ",", "'glymurrc'", ")", "if", "os", ".", "path", ".", "exists", "(", "fname", ")", ":", "return", "fname...	24.818182	15.727273
def _nemo_accpars(self,vo,ro): """ NAME: _nemo_accpars PURPOSE: return the accpars potential parameters for use of this potential with NEMO INPUT: vo - velocity unit in km/s ro - length unit in kpc OUTPUT: accpars str...	[ "def", "_nemo_accpars", "(", "self", ",", "vo", ",", "ro", ")", ":", "warnings", ".", "warn", "(", "\"NEMO's LogPot does not allow flattening in z (for some reason); therefore, flip y and z in NEMO wrt galpy; also does not allow the triaxial b parameter\"", ",", "galpyWarning", ")"...	26.266667	29.933333
def all(self, fields=None, include_fields=True, page=None, per_page=None, extra_params=None): """Retrieves a list of all the applications. Important: The client_secret and encryption_key attributes can only be retrieved with the read:client_keys scope. Args: fields (list of ...	[ "def", "all", "(", "self", ",", "fields", "=", "None", ",", "include_fields", "=", "True", ",", "page", "=", "None", ",", "per_page", "=", "None", ",", "extra_params", "=", "None", ")", ":", "params", "=", "extra_params", "or", "{", "}", "params", "[...	41.875	28.15625
def send_quick_chat(self, team_only, quick_chat): """ Sends a quick chat to the other bots. If it is QuickChats.CHAT_NONE or None it does not send a quick chat to other bots. :param team_only: either True or False, this says if the quick chat should only go to team members. :para...	[ "def", "send_quick_chat", "(", "self", ",", "team_only", ",", "quick_chat", ")", ":", "if", "quick_chat", "==", "QuickChats", ".", "CHAT_NONE", "or", "quick_chat", "is", "None", ":", "return", "self", ".", "__quick_chat_func", "(", "team_only", ",", "quick_cha...	55	25.2
def add_raw_code(self, string_or_list): """Add raw Gmsh code. """ if _is_string(string_or_list): self._GMSH_CODE.append(string_or_list) else: assert isinstance(string_or_list, list) for string in string_or_list: self._GMSH_CODE.append(s...	[ "def", "add_raw_code", "(", "self", ",", "string_or_list", ")", ":", "if", "_is_string", "(", "string_or_list", ")", ":", "self", ".", "_GMSH_CODE", ".", "append", "(", "string_or_list", ")", "else", ":", "assert", "isinstance", "(", "string_or_list", ",", "...	33.2	8.4
def coarsen_matrix(Z, xlevel=0, ylevel=0, method='average'): """ This returns a coarsened numpy matrix. method can be 'average', 'maximum', or 'minimum' """ # coarsen x if not ylevel: Z_coarsened = Z else: temp = [] for z in Z: temp.append(coarsen_array(z, ylevel, m...	[ "def", "coarsen_matrix", "(", "Z", ",", "xlevel", "=", "0", ",", "ylevel", "=", "0", ",", "method", "=", "'average'", ")", ":", "# coarsen x", "if", "not", "ylevel", ":", "Z_coarsened", "=", "Z", "else", ":", "temp", "=", "[", "]", "for", "z", "in"...	26.428571	21.971429
def parse(text): """Try to parse into a date. Return: tuple (year, month, date) if successful; otherwise None. """ try: ymd = text.lower().split('-') assert len(ymd) == 3 year = -1 if ymd[0] in ('xx', 'xxxx') else int(ymd[0]) m...	[ "def", "parse", "(", "text", ")", ":", "try", ":", "ymd", "=", "text", ".", "lower", "(", ")", ".", "split", "(", "'-'", ")", "assert", "len", "(", "ymd", ")", "==", "3", "year", "=", "-", "1", "if", "ymd", "[", "0", "]", "in", "(", "'xx'",...	36.555556	14.5
def convert_layer_to_pil(layer, apply_icc=True, **kwargs): """Convert Layer to PIL Image.""" from PIL import Image header = layer._psd._record.header if header.color_mode == ColorMode.BITMAP: raise NotImplementedError width, height = layer.width, layer.height channels, alpha = [], None ...	[ "def", "convert_layer_to_pil", "(", "layer", ",", "apply_icc", "=", "True", ",", "", "", "kwargs", ")", ":", "from", "PIL", "import", "Image", "header", "=", "layer", ".", "_psd", ".", "_record", ".", "header", "if", "header", ".", "color_mode", "==", ...	38.388889	15.305556
def get_immoralities(self): """ Finds all the immoralities in the model A v-structure X -> Z <- Y is an immorality if there is no direct edge between X and Y . Returns ------- set: A set of all the immoralities in the model Examples --------- >>>...	[ "def", "get_immoralities", "(", "self", ")", ":", "immoralities", "=", "set", "(", ")", "for", "node", "in", "self", ".", "nodes", "(", ")", ":", "for", "parents", "in", "itertools", ".", "combinations", "(", "self", ".", "predecessors", "(", "node", "...	38.333333	21.833333
def xml_extract_date(node, xpath, date_format='%d/%m/%Y'): """ :param node: the node to be queried :param xpath: the path to fetch the child node that has the wanted date """ return datetime.strptime(xml_extract_text(node, xpath), date_format)	[ "def", "xml_extract_date", "(", "node", ",", "xpath", ",", "date_format", "=", "'%d/%m/%Y'", ")", ":", "return", "datetime", ".", "strptime", "(", "xml_extract_text", "(", "node", ",", "xpath", ")", ",", "date_format", ")" ]	43	14.333333
def remove_tags(self, tags, **kwargs): """ :param tags: Tags to remove from the app :type tags: array Removes the specified application name tags (aliases) from this app, so that it is no longer addressable by those aliases. The current user must be a developer of the a...	[ "def", "remove_tags", "(", "self", ",", "tags", ",", "", "", "kwargs", ")", ":", "if", "self", ".", "_dxid", "is", "not", "None", ":", "return", "dxpy", ".", "api", ".", "app_remove_tags", "(", "self", ".", "_dxid", ",", "input_params", "=", "{", ...	39.5	24.375
def _estimate_p_values(self): """estimate the p-values for all features """ if not self._is_fitted: raise AttributeError('GAM has not been fitted. Call fit first.') p_values = [] for term_i in range(len(self.terms)): p_values.append(self._compute_p_value(...	[ "def", "_estimate_p_values", "(", "self", ")", ":", "if", "not", "self", ".", "_is_fitted", ":", "raise", "AttributeError", "(", "'GAM has not been fitted. Call fit first.'", ")", "p_values", "=", "[", "]", "for", "term_i", "in", "range", "(", "len", "(", "sel...	31.181818	17.727273
def split_data(data, num_slice, batch_axis=0, even_split=True): """Splits an NDArray into `num_slice` slices along `batch_axis`. Usually used for data parallelism where each slices is sent to one device (i.e. GPU). Parameters ---------- data : NDArray A batch of data. num_slice : in...	[ "def", "split_data", "(", "data", ",", "num_slice", ",", "batch_axis", "=", "0", ",", "even_split", "=", "True", ")", ":", "size", "=", "data", ".", "shape", "[", "batch_axis", "]", "if", "even_split", "and", "size", "%", "num_slice", "!=", "0", ":", ...	36.469388	20.612245
def _parse_current_member(self, previous_rank, values): """ Parses the column texts of a member row into a member dictionary. Parameters ---------- previous_rank: :class:`dict`[int, str] The last rank present in the rows. values: tuple[:class:`str`] ...	[ "def", "_parse_current_member", "(", "self", ",", "previous_rank", ",", "values", ")", ":", "rank", ",", "name", ",", "vocation", ",", "level", ",", "joined", ",", "status", "=", "values", "rank", "=", "previous_rank", "[", "1", "]", "if", "rank", "==", ...	37.333333	16.857143
def mf_aBl(self): """ These are the expected log likelihoods (node potentials) as seen from the discrete states. """ mf_aBl = self._mf_aBl = np.zeros((self.T, self.num_states)) ids, dds, eds = self.init_dynamics_distns, self.dynamics_distns, \ self.emission_di...	[ "def", "mf_aBl", "(", "self", ")", ":", "mf_aBl", "=", "self", ".", "_mf_aBl", "=", "np", ".", "zeros", "(", "(", "self", ".", "T", ",", "self", ".", "num_states", ")", ")", "ids", ",", "dds", ",", "eds", "=", "self", ".", "init_dynamics_distns", ...	39.052632	15.789474
def _parse_row(row): """Parses HTML row :param row: HTML row :return: list of values in row """ data = [] labels = HtmlTable._get_row_tag(row, "th") if labels: data += labels columns = HtmlTable._get_row_tag(row, "td") if columns: ...	[ "def", "_parse_row", "(", "row", ")", ":", "data", "=", "[", "]", "labels", "=", "HtmlTable", ".", "_get_row_tag", "(", "row", ",", "\"th\"", ")", "if", "labels", ":", "data", "+=", "labels", "columns", "=", "HtmlTable", ".", "_get_row_tag", "(", "row"...	19.444444	20.5
def _accept_responses(self, expected_header, info_cb, timeout_ms=None): """Accepts responses until the expected header or a FAIL. Arguments: expected_header: OKAY or DATA info_cb: Optional callback for text sent from the bootloader. timeout_ms: Timeout in milliseconds to wait for each respons...	[ "def", "_accept_responses", "(", "self", ",", "expected_header", ",", "info_cb", ",", "timeout_ms", "=", "None", ")", ":", "while", "True", ":", "response", "=", "self", ".", "usb", ".", "read", "(", "64", ",", "timeout_ms", "=", "timeout_ms", ")", "head...	38.083333	20.305556
def get_vlan_brief_input_request_type_get_next_request_last_rcvd_vlan_id(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") get_vlan_brief = ET.Element("get_vlan_brief") config = get_vlan_brief input = ET.SubElement(get_vlan_brief, "input") ...	[ "def", "get_vlan_brief_input_request_type_get_next_request_last_rcvd_vlan_id", "(", "self", ",", "", "", "kwargs", ")", ":", "config", "=", "ET", ".", "Element", "(", "\"config\"", ")", "get_vlan_brief", "=", "ET", ".", "Element", "(", "\"get_vlan_brief\"", ")", ...	47.857143	19.357143
def query_remote_ref(self, remote, ref): """Query remote repo about given ref. :return: ``('tag', sha)`` if ref is a tag in remote ``('branch', sha)`` if ref is branch (aka "head") in remote ``(None, ref)`` if ref does not exist in remote. This happens ...	[ "def", "query_remote_ref", "(", "self", ",", "remote", ",", "ref", ")", ":", "out", "=", "self", ".", "log_call", "(", "[", "'git'", ",", "'ls-remote'", ",", "remote", ",", "ref", "]", ",", "cwd", "=", "self", ".", "cwd", ",", "callwith", "=", "sub...	49.333333	14.333333
def submit_jobs(root_dir, jobs, sgeargs=None): """ Submit each of the passed jobs to the SGE server, using the passed directory as root for SGE output. - root_dir Path to output directory - jobs List of Job objects """ waiting = list(jobs) # List of jobs still to...	[ "def", "submit_jobs", "(", "root_dir", ",", "jobs", ",", "sgeargs", "=", "None", ")", ":", "waiting", "=", "list", "(", "jobs", ")", "# List of jobs still to be done", "# Loop over the list of pending jobs, while there still are any", "while", "len", "(", "waiting", "...	40.588235	11.823529
def OnFindToolbarToggle(self, event): """Search toolbar toggle event handler""" self.main_window.find_toolbar.SetGripperVisible(True) find_toolbar_info = self.main_window._mgr.GetPane("find_toolbar") self._toggle_pane(find_toolbar_info) event.Skip()	[ "def", "OnFindToolbarToggle", "(", "self", ",", "event", ")", ":", "self", ".", "main_window", ".", "find_toolbar", ".", "SetGripperVisible", "(", "True", ")", "find_toolbar_info", "=", "self", ".", "main_window", ".", "_mgr", ".", "GetPane", "(", "\"find_tool...	28.4	24.1
def times_csv(path, times, annotations=None, delimiter=',', fmt='%0.3f'): r"""Save time steps as in CSV format. This can be used to store the output of a beat-tracker or segmentation algorithm. If only `times` are provided, the file will contain each value of `times` on a row:: times[0]\n ...	[ "def", "times_csv", "(", "path", ",", "times", ",", "annotations", "=", "None", ",", "delimiter", "=", "','", ",", "fmt", "=", "'%0.3f'", ")", ":", "if", "annotations", "is", "not", "None", "and", "len", "(", "annotations", ")", "!=", "len", "(", "ti...	26.507692	22.138462
def message(self, data): """Function to display messages to the user """ msg = gtk.MessageDialog(None, gtk.DIALOG_MODAL, gtk.MESSAGE_INFO, gtk.BUTTONS_CLOSE, data) msg.set_resizable(1) msg.set_title(self.dialog_title) self.img.set_from_file...	[ "def", "message", "(", "self", ",", "data", ")", ":", "msg", "=", "gtk", ".", "MessageDialog", "(", "None", ",", "gtk", ".", "DIALOG_MODAL", ",", "gtk", ".", "MESSAGE_INFO", ",", "gtk", ".", "BUTTONS_CLOSE", ",", "data", ")", "msg", ".", "set_resizable...	34.916667	12.583333
def delete(self, ids): """ Method to delete network-ipv4's by their ids :param ids: Identifiers of network-ipv4's :return: None """ url = build_uri_with_ids('api/v3/networkv4/%s/', ids) return super(ApiNetworkIPv4, self).delete(url)	[ "def", "delete", "(", "self", ",", "ids", ")", ":", "url", "=", "build_uri_with_ids", "(", "'api/v3/networkv4/%s/'", ",", "ids", ")", "return", "super", "(", "ApiNetworkIPv4", ",", "self", ")", ".", "delete", "(", "url", ")" ]	28.1	17.3
def reset(self): """ Resets the value of config item to its default value. """ old_value = self._value old_raw_str_value = self.raw_str_value self._value = not_set self.raw_str_value = not_set new_value = self._value if old_value is not_set: ...	[ "def", "reset", "(", "self", ")", ":", "old_value", "=", "self", ".", "_value", "old_raw_str_value", "=", "self", ".", "raw_str_value", "self", ".", "_value", "=", "not_set", "self", ".", "raw_str_value", "=", "not_set", "new_value", "=", "self", ".", "_va...	27.48	15.48
def toggleCollapseBefore( self ): """ Collapses the splitter before this handle. """ if ( self.isCollapsed() ): self.uncollapse() else: self.collapse( XSplitterHandle.CollapseDirection.Before )	[ "def", "toggleCollapseBefore", "(", "self", ")", ":", "if", "(", "self", ".", "isCollapsed", "(", ")", ")", ":", "self", ".", "uncollapse", "(", ")", "else", ":", "self", ".", "collapse", "(", "XSplitterHandle", ".", "CollapseDirection", ".", "Before", "...	31.25	11.25
def readcols(infile, cols=[0, 1, 2, 3], hms=False): """ Read the columns from an ASCII file as numpy arrays. Parameters ---------- infile : str Filename of ASCII file with array data as columns. cols : list of int List of 0-indexed column numbers for columns to be turned into n...	[ "def", "readcols", "(", "infile", ",", "cols", "=", "[", "0", ",", "1", ",", "2", ",", "3", "]", ",", "hms", "=", "False", ")", ":", "fin", "=", "open", "(", "infile", ",", "'r'", ")", "outarr", "=", "[", "]", "for", "l", "in", "fin", ".", ...	28.068182	21.386364
def _format_object(obj, format_type=None): """Depending on settings calls either `format_keys` or `format_field_names`""" if json_api_settings.FORMAT_KEYS is not None: return format_keys(obj, format_type) return format_field_names(obj, format_type)	[ "def", "_format_object", "(", "obj", ",", "format_type", "=", "None", ")", ":", "if", "json_api_settings", ".", "FORMAT_KEYS", "is", "not", "None", ":", "return", "format_keys", "(", "obj", ",", "format_type", ")", "return", "format_field_names", "(", "obj", ...	37.714286	14.571429
def bundle(self, app, results_dir): """Create a self-contained application bundle. The bundle will contain the target classes, dependencies and resources. """ assert(isinstance(app, BundleCreate.App)) bundle_dir = self.get_bundle_dir(app.id, results_dir) self.context.log.debug('creating {}'.fo...	[ "def", "bundle", "(", "self", ",", "app", ",", "results_dir", ")", ":", "assert", "(", "isinstance", "(", "app", ",", "BundleCreate", ".", "App", ")", ")", "bundle_dir", "=", "self", ".", "get_bundle_dir", "(", "app", ".", "id", ",", "results_dir", ")"...	38.695652	23.5
def __process_by_ccore(self): """! @brief Performs cluster analysis using CCORE (C/C++ part of pyclustering library). """ (self.__clusters, self.__noise, self.__ordering, self.__eps, objects_indexes, objects_core_distances, objects_reachability_distances) = \ ...	[ "def", "__process_by_ccore", "(", "self", ")", ":", "(", "self", ".", "__clusters", ",", "self", ".", "__noise", ",", "self", ".", "__ordering", ",", "self", ".", "__eps", ",", "objects_indexes", ",", "objects_core_distances", ",", "objects_reachability_distance...	42.863636	28
def spidex_human(variant_obj): """Translate SPIDEX annotation to human readable string.""" if variant_obj.get('spidex') is None: return 'not_reported' elif abs(variant_obj['spidex']) < SPIDEX_HUMAN['low']['pos'][1]: return 'low' elif abs(variant_obj['spidex']) < SPIDEX_HUMAN['medium']['p...	[ "def", "spidex_human", "(", "variant_obj", ")", ":", "if", "variant_obj", ".", "get", "(", "'spidex'", ")", "is", "None", ":", "return", "'not_reported'", "elif", "abs", "(", "variant_obj", "[", "'spidex'", "]", ")", "<", "SPIDEX_HUMAN", "[", "'low'", "]",...	37.5	16.8
def connect(self, node="", rpcuser="", rpcpassword="", **kwargs): """ Connect to blockchain network (internal use only) """ if not node: if "node" in self.config: node = self.config["node"] else: raise ValueError("A Blockchain node needs to...	[ "def", "connect", "(", "self", ",", "node", "=", "\"\"", ",", "rpcuser", "=", "\"\"", ",", "rpcpassword", "=", "\"\"", ",", "", "", "kwargs", ")", ":", "if", "not", "node", ":", "if", "\"node\"", "in", "self", ".", "config", ":", "node", "=", "...	37.9375	19.1875
def getCompressMod(self): ''' getCompressMod - Return the module used for compression on this field @return <module> - The module for compression ''' if self.compressMode == COMPRESS_MODE_ZLIB: return zlib if self.compressMode == COMPRESS_MODE_BZ2: return bz2 if self.compressMode == COMPRESS_MODE...	[ "def", "getCompressMod", "(", "self", ")", ":", "if", "self", ".", "compressMode", "==", "COMPRESS_MODE_ZLIB", ":", "return", "zlib", "if", "self", ".", "compressMode", "==", "COMPRESS_MODE_BZ2", ":", "return", "bz2", "if", "self", ".", "compressMode", "==", ...	35.428571	32.571429
def set_bookmarks(self, bookmarks): """ Store the sequence of bookmarks `bookmarks`. Causes signals to be fired to reflect the changes. .. note:: This should normally not be used. It does not mitigate the race condition between clients concurrently m...	[ "def", "set_bookmarks", "(", "self", ",", "bookmarks", ")", ":", "with", "(", "yield", "from", "self", ".", "_lock", ")", ":", "yield", "from", "self", ".", "_set_bookmarks", "(", "bookmarks", ")", "self", ".", "_diff_emit_update", "(", "bookmarks", ")" ]	44.5	17.5
def pass_defaults(func): """Decorator that returns a function named wrapper. When invoked, wrapper invokes func with default kwargs appended. Parameters ---------- func : callable The function to append the default kwargs to """ @functools.wraps(func) def wrapper(self, args, ...	[ "def", "pass_defaults", "(", "func", ")", ":", "@", "functools", ".", "wraps", "(", "func", ")", "def", "wrapper", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "merged", "=", "{", "}", "merged", ".", "update", "(", "self", "....	27.176471	16.705882
def plot_net(fignum): """ Draws circle and tick marks for equal area projection. """ # make the perimeter plt.figure(num=fignum,) plt.clf() plt.axis("off") Dcirc = np.arange(0, 361.) Icirc = np.zeros(361, 'f') Xcirc, Ycirc = [], [] for k in range(361): XY = pmag.dimap(Dc...	[ "def", "plot_net", "(", "fignum", ")", ":", "# make the perimeter", "plt", ".", "figure", "(", "num", "=", "fignum", ",", ")", "plt", ".", "clf", "(", ")", "plt", ".", "axis", "(", "\"off\"", ")", "Dcirc", "=", "np", ".", "arange", "(", "0", ",", ...	26.519231	13.019231
def get_query_batch_request(self, batch_id, job_id=None): """ Fetch the request sent for the batch. Note should only used for query batches """ if not job_id: job_id = self.lookup_job_id(batch_id) url = self.endpoint + "/job/{}/batch/{}/request".format(job_id, batch_id) resp...	[ "def", "get_query_batch_request", "(", "self", ",", "batch_id", ",", "job_id", "=", "None", ")", ":", "if", "not", "job_id", ":", "job_id", "=", "self", ".", "lookup_job_id", "(", "batch_id", ")", "url", "=", "self", ".", "endpoint", "+", "\"/job/{}/batch/...	45.888889	18.444444
def _fetch(self): """forces update of a local cached copy of the real object (regardless of the preference setting self.cache)""" if not self._obcache_current: from distob import engine ax = self._distaxis self._obcache = concatenate([ra._ob for ra in self._su...	[ "def", "_fetch", "(", "self", ")", ":", "if", "not", "self", ".", "_obcache_current", ":", "from", "distob", "import", "engine", "ax", "=", "self", ".", "_distaxis", "self", ".", "_obcache", "=", "concatenate", "(", "[", "ra", ".", "_ob", "for", "ra", ...	49.75	12.125
def new_format(self, navbar: BeautifulSoup, content: BeautifulSoup) -> List[str]: """ Extracts email message information if it uses the new Mailman format Args: content: BeautifulSoup Returns: List[str] """ sender = content.find(id='from').text.spli...	[ "def", "new_format", "(", "self", ",", "navbar", ":", "BeautifulSoup", ",", "content", ":", "BeautifulSoup", ")", "->", "List", "[", "str", "]", ":", "sender", "=", "content", ".", "find", "(", "id", "=", "'from'", ")", ".", "text", ".", "split", "("...	41.84	22
def migrate_case(adapter: MongoAdapter, scout_case: dict, archive_data: dict): """Migrate case information from archive.""" # update collaborators collaborators = list(set(scout_case['collaborators'] + archive_data['collaborators'])) if collaborators != scout_case['collaborators']: LOG.info(f"se...	[ "def", "migrate_case", "(", "adapter", ":", "MongoAdapter", ",", "scout_case", ":", "dict", ",", "archive_data", ":", "dict", ")", ":", "# update collaborators", "collaborators", "=", "list", "(", "set", "(", "scout_case", "[", "'collaborators'", "]", "+", "ar...	43.254545	19.909091
def frame(y, frame_length=2048, hop_length=512): '''Slice a time series into overlapping frames. This implementation uses low-level stride manipulation to avoid redundant copies of the time series data. Parameters ---------- y : np.ndarray [shape=(n,)] Time series to frame. Must be one...	[ "def", "frame", "(", "y", ",", "frame_length", "=", "2048", ",", "hop_length", "=", "512", ")", ":", "if", "not", "isinstance", "(", "y", ",", "np", ".", "ndarray", ")", ":", "raise", "ParameterError", "(", "'Input must be of type numpy.ndarray, '", "'given ...	34.121622	25.472973
def confd_state_internal_callpoints_notification_stream_replay_registration_type_file_file(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") confd_state = ET.SubElement(config, "confd-state", xmlns="http://tail-f.com/yang/confd-monitoring") internal = ET.S...	[ "def", "confd_state_internal_callpoints_notification_stream_replay_registration_type_file_file", "(", "self", ",", "", "", "kwargs", ")", ":", "config", "=", "ET", ".", "Element", "(", "\"config\"", ")", "confd_state", "=", "ET", ".", "SubElement", "(", "config", ...	54.235294	22.882353
def mget(self, pat=None): """ Get a dictionary mapping of all k:v pairs with key matching glob style expression `pat`. """ if pat is None: return {} expr = re.compile(fnmatch.translate(pat)) m = {} for key in tuple(self.keys()): #ma...	[ "def", "mget", "(", "self", ",", "pat", "=", "None", ")", ":", "if", "pat", "is", "None", ":", "return", "{", "}", "expr", "=", "re", ".", "compile", "(", "fnmatch", ".", "translate", "(", "pat", ")", ")", "m", "=", "{", "}", "for", "key", "i...	31.6	10.666667
def SchemaValidateCtxt(self, reader, options): """Use W3C XSD schema context to validate the document as it is processed. Activation is only possible before the first Read(). If @ctxt is None, then XML Schema validation is deactivated. """ if reader is None: reader__o = No...	[ "def", "SchemaValidateCtxt", "(", "self", ",", "reader", ",", "options", ")", ":", "if", "reader", "is", "None", ":", "reader__o", "=", "None", "else", ":", "reader__o", "=", "reader", ".", "_o", "ret", "=", "libxml2mod", ".", "xmlTextReaderSchemaValidateCtx...	50.555556	14.888889

def pgpdf(omega, b, psi, trunc=200): """ Approximate the density log PG(omega | b, psi) using a truncation of the density written as an infinite sum. :param omega: point at which to evaluate density :param b: first parameter of PG :param psi: tilting of PG :param trunc: number of terms in...

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28.111111

15.222222

def __choices2tkvalues(self, choices): """choices: iterable of key, value pairs""" values = [] for k, v in choices: values.append(v) return values

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30.833333

11

def path_fraction_id_offset(points, fraction, relative_offset=False): '''Find the segment which corresponds to the fraction of the path length along the piecewise linear curve which is constructed from the set of points. Args: points: an iterable of indexable objects with indices 0, 1, ...

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38.461538

17.230769

def getMaximinScores(profile): """ Returns a dictionary that associates integer representations of each candidate with their Copeland score. :ivar Profile profile: A Profile object that represents an election profile. """ # Currently, we expect the profile to contain complete ordering over can...

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38.066667

25.2

def _check_smart_storage_message(self): """Check for smart storage message. :returns: result, raid_message """ ssc_mesg = self.smart_storage_config_message result = True raid_message = "" for element in ssc_mesg: if "Success" not in element['MessageId...

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33.076923

10.461538

def complete_object_value( exe_context, # type: ExecutionContext return_type, # type: GraphQLObjectType field_asts, # type: List[Field] info, # type: ResolveInfo path, # type: List[Union[int, str]] result, # type: Any ): # type: (...) -> Dict[str, Any] """ Complete an Object va...

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36.130435

17.608696

def validate(self, value): """ Applies the validation criteria. Returns value, new value, or None if invalid. """ try: coord.Angle(value, unit=self.unit) return value except ValueError: return None

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27.2

10.8

def question_field(self, move_x, move_y): """Question a grid by given position.""" field_status = self.info_map[move_y, move_x] # a questioned or undiscovered field if field_status != 10 and (field_status == 9 or field_status == 11): self.info_map[move_y, move_x] = 10

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43.857143

14.142857

def DataPath(): """ Return the default path for fit data h5 files""" return os.path.abspath('%s/data'%(os.path.dirname( \ os.path.realpath(__file__))))

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41

11

def _mount(device): ''' Mount the device in a temporary place. ''' dest = tempfile.mkdtemp() res = __states__['mount.mounted'](dest, device=device, fstype='btrfs', opts='subvol=/', persist=False) if not res['result']: log.error('Cannot mount device %...

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32.5

22.166667

def switch_format(self, gsr): """ Convert the Wharton GSR format into the studyspaces API format. """ if "error" in gsr: return gsr categories = { "cid": 1, "name": "Huntsman Hall", "rooms": [] } for time in gsr["times"]: ...

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42.627907

14

def _key_from_json(self, data): """ Internal method, for creating the Key object. """ key = Key() key.algorithm = data["Algorithm"] key.cipher_mode = data["CipherMode"] key.expiration = datetime.strptime(data["Expiration"].split(".")[0], ...

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35.214286

11.642857

def deauthorize_application(request): """ When a user deauthorizes an application, Facebook sends a HTTP POST request to the application's "deauthorization callback" URL. This view picks up on requests of this sort and marks the corresponding users as unauthorized. """ if request.facebook: ...

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31.823529

22.176471

def _load_mnist_dataset(shape, path, name='mnist', url='http://yann.lecun.com/exdb/mnist/'): """A generic function to load mnist-like dataset. Parameters: ---------- shape : tuple The shape of digit images. path : str The path that the data is downloaded to. name : str T...

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46.377049

22.57377

def _invalidates_cache(f): """ Decorator for rruleset methods which may invalidate the cached length. """ def inner_func(self, *args, **kwargs): rv = f(self, *args, **kwargs) self._invalidate_cache() return rv return inner_func

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22.166667

15.833333

def create_service(self, customer_id, name, publish_key=None, comment=None): """Create a service.""" body = self._formdata({ "customer_id": customer_id, "name": name, "publish_key": publish_key, "comment": comment, }, FastlyService.FIELDS) content = self._fetch("/service", method="POST", body=body) ...

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34.8

15.1

def weld_compare(array, scalar, operation, weld_type): """Applies comparison operation between each element in the array with scalar. Parameters ---------- array : numpy.ndarray or WeldObject Input data. scalar : {int, float, str, bool, bytes_} Value to compare with; must be same ty...

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31.863636

20.363636

def annotate_powerlaw(text, exp, startx, starty, width=None, rx=0.5, ry=0.5, **kwargs): r''' Added a label to the middle of a power-law annotation (see ``goosempl.plot_powerlaw``). :arguments: **exp** (``float``) The power-law exponent. **startx, starty** (``float``) Start coordinates. :options: **...

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27.696203

25.443038

def find_or_create(self, constructor, props, *, comp=None): """Looks for a model taht matches the given dictionary constraints. If it is not found, a new model of the given type is created and saved to the database, then returned. """ model = self.find_model(constructor, comp or props) if model is N...

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44.333333

14.777778

def to_dict(self): """Returns attributes formatted as a dictionary.""" d = {'id': self.id, 'classes': self.classes} d.update(self.kvs) return d

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34.2

14.4

def handle_bad_update(operation, ret): '''report error for bad update''' print("Error " + operation) sys.exit('Return code: ' + str(ret.status_code) + ' Error: ' + ret.text)

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45.5

12.5

def getOccurrenceOfCharAtIndex(self, sym, index): ''' This functions gets the FM-index value of a character at the specified position @param sym - the character to find the occurrence level @param index - the index we want to find the occurrence level at @return - the number of o...

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45.941176

25

def _search(self, model, condition=None, search_field='name', value_field='id', label_field=None, pagination=True): """ Default search function :param search_field: Used for search field, default is 'name' :param value_field: Used for id field, default is id :para...

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40.631579

18.736842

def get_value(self,column=None,keyValue=None,table=None,verbose=None): """ Returns the value from a cell as specified by row and column ids. :param column (string, optional): Specifies the name of a column in the tab le :param keyValue (string, optional): Specifies a row of ...

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48.823529

29.764706

def get_definition(self, name): """Get definitions by name.""" for definition in self.definitions: if definition.name == name: return definition

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36.8

4

def inbox_count_for(user): """ returns the number of unread messages for the given user but does not mark them seen """ return Message.objects.filter(recipient=user, read_at__isnull=True, recipient_deleted_at__isnull=True).count()

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40.833333

23.833333

def _label_generalized(self, node): """Helper method that labels the nodes of GST with indexes of strings found in their descendants. """ if node.is_leaf(): x = {self._get_word_start_index(node.idx)} else: x = {n for ns in node.transition_links for n in ns...

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40.777778

12.777778

def isolate_region(sequences, start, end, gap_char='-'): """ Replace regions before and after start:end with gap chars """ # Check arguments if end <= start: raise ValueError("start of slice must precede end ({0} !> {1})".format( end, start)) for sequence in sequences: ...

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32.823529

15.176471

def max_await_time_ms(self, max_await_time_ms): """Specifies a time limit for a getMore operation on a :attr:`~pymongo.cursor.CursorType.TAILABLE_AWAIT` cursor. For all other types of cursor max_await_time_ms is ignored. Raises :exc:`TypeError` if `max_await_time_ms` is not an integer o...

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def status_to_string(cls, status): """ Converts a message status to a string. :param status: Status to convert (p yqode.core.modes.CheckerMessages) :return: The status string. :rtype: str """ strings = {CheckerMessages.INFO: "Info", CheckerMess...

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def to_headers(self, span_context): """Convert a SpanContext object to B3 propagation headers. :type span_context: :class:`~opencensus.trace.span_context.SpanContext` :param span_context: SpanContext object. :rtype: dict :returns: B3 propagation headers. """...

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def toggle_help(self, event, mode=None): """ Show/hide help message on help button click. """ # if mode == 'open', show no matter what. # if mode == 'close', close. otherwise, change state btn = self.toggle_help_btn shown = self.help_msg_boxsizer.GetStaticBox().I...

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def create(self, friendly_name=values.unset, apn_credential_sid=values.unset, gcm_credential_sid=values.unset, messaging_service_sid=values.unset, facebook_messenger_page_id=values.unset, default_apn_notification_protocol_version=values.unset, default_gcm_noti...

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def build_sort(): '''Build sort query paramter from kwargs''' sorts = request.args.getlist('sort') sorts = [sorts] if isinstance(sorts, basestring) else sorts sorts = [s.split(' ') for s in sorts] return [{SORTS[s]: d} for s, d in sorts if s in SORTS]

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def until_protocol(self, timeout=None): """Return future that resolves after receipt of katcp protocol info. If the returned future resolves, the server's protocol information is available in the ProtocolFlags instance self.protocol_flags. """ t0 = self.ioloop.time() yi...

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def changelog(ctx, check, version, old_version, initial, quiet, dry_run): """Perform the operations needed to update the changelog. This method is supposed to be used by other tasks and not directly. """ if check not in get_valid_checks(): abort('Check `{}` is not an Agent-based Integration'.fo...

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def vectorize_range(values): """ This function is for url encoding. Takes a value or a tuple or list of tuples and returns a single result, tuples are joined by "," if necessary, elements in tuple are joined by '_' """ if isinstance(values, tuple): return '_'.join(str(i) for i in values)...

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def backoff( max_tries=constants.BACKOFF_DEFAULT_MAXTRIES, delay=constants.BACKOFF_DEFAULT_DELAY, factor=constants.BACKOFF_DEFAULT_FACTOR, exceptions=None): """Implements an exponential backoff decorator which will retry decorated function upon given exceptions. This implementati...

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def decode(string): """Decode Erlang external term.""" if not string: raise IncompleteData(string) if string[0] != 131: raise ValueError("unknown protocol version: %r" % string[0]) if string[1:2] == b'P': # compressed term if len(string) < 16: raise Incomplete...

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def _pack(self, fname, encoding): """Save workflow with ``--pack`` option This means that al tools and subworkflows are included in the workflow file that is created. A packed workflow cannot be loaded and used in scriptcwl. """ (fd, tmpfile) = tempfile.mkstemp() ...

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def build_app_loggers(log_level, apps, handlers=None): """ Return a logger dict for app packages with the given log level and no propogation since the apps list is parsed/normalized to be the set of top- level apps. The optional handlers argument is provided so that this pattern of app loggers can be u...

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def merge(args): """ %prog merge bedfiles > newbedfile Concatenate bed files together. Performing seqid and name changes to avoid conflicts in the new bed file. """ p = OptionParser(merge.__doc__) p.set_outfile() opts, args = p.parse_args(args) if len(args) < 1: sys.exit(no...

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def fields_to_dict(fields, type_=OrderedDict): """Convert a flat list of key/values into an OrderedDict""" fields_iterator = iter(fields) return type_(zip(fields_iterator, fields_iterator))

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def get_invoices_per_page(self, per_page=1000, page=1, params=None): """ Get invoices per page :param per_page: How many objects per page. Default: 1000 :param page: Which page. Default: 1 :param params: Search parameters. Default: {} :return: list """ re...

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def generator_to_list(function): """ Wrap a generator function so that it returns a list when called. For example: # Define a generator >>> def mygen(n): ... i = 0 ... while i < n: ... yield i ... i += 1 # This is ...

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def get_authorization_admin_session_for_vault(self, vault_id): """Gets the ``OsidSession`` associated with the authorization admin service for the given vault. arg: vault_id (osid.id.Id): the ``Id`` of the vault return: (osid.authorization.AuthorizationAdminSession) - ``an _a...

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def parse_cfgstr_list(cfgstr_list, smartcast=True, oldmode=True): r""" Parses a list of items in the format ['var1:val1', 'var2:val2', 'var3:val3'] the '=' character can be used instead of the ':' character if desired TODO: see ut.parse_cfgstr3 Args: cfgstr_list (list): Returns: ...

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def debug(verbose): """Run the experiment locally.""" (id, tmp) = setup_experiment(debug=True, verbose=verbose) # Drop all the tables from the database. db.init_db(drop_all=True) # Switch to the temporary directory. cwd = os.getcwd() os.chdir(tmp) # Load psiTurk configuration. con...

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def respects(g,imp): """ g is an int, where each bit is an attribute implication UV is ternary coded 1 = ∈V, 2 = ∈U, 0 otherwise g and UV have the same number of digits """ if isinstance(g,str): g = int(g,2) if isinstance(imp,int): imp = istr(imp,3,g.bit_length()) V = int...

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def get_subfields(self, datafield, subfield, i1=None, i2=None, exception=False): """ Return content of given `subfield` in `datafield`. Args: datafield (str): Section name (for example "001", "100", "700"). subfield (str): Subfield name (for exampl...

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def render(self, request, template, context): """ Returns a response. By default, this will contain the rendered PDF, but if both ``allow_force_html`` is ``True`` and the querystring ``html=true`` was set it will return a plain HTML. """ if self.allow_force_html and self....

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42.857143

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def tools(self, extra_params=None): """" All Tools in this Space """ return self.api._get_json( SpaceTool, space=self, rel_path=self._build_rel_path('space_tools'), extra_params=extra_params, )

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def _is_socket(cls, stream): """Check if the given stream is a socket.""" try: fd = stream.fileno() except ValueError: # If it has no file descriptor, it's not a socket return False sock = socket.fromfd(fd, socket.AF_INET, socket.SOCK_RAW) try...

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def filter_kepler_lcdict(lcdict, filterflags=True, nanfilter='sap,pdc', timestoignore=None): '''This filters the Kepler `lcdict`, removing nans and bad observations. By default, this function removes points in the Kepler LC that hav...

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def get_payments(self): """Get all your payments. Returns: list of dicts: payments For each payout in the list, a dict contains the following items: * nmrAmount (`decimal.Decimal`) * usdAmount (`decimal.Decimal`) * tournament (`s...

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def page(title=None, pageid=None, auto_suggest=True, redirect=True, preload=False): ''' Get a WikipediaPage object for the page with title `title` or the pageid `pageid` (mutually exclusive). Keyword arguments: * title - the title of the page to load * pageid - the numeric pageid of the page to load * a...

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def glymurrc_fname(): """Return the path to the configuration file. Search order: 1) current working directory 2) environ var XDG_CONFIG_HOME 3) $HOME/.config/glymur/glymurrc """ # Current directory. fname = os.path.join(os.getcwd(), 'glymurrc') if os.path.exists(fname)...

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def _nemo_accpars(self,vo,ro): """ NAME: _nemo_accpars PURPOSE: return the accpars potential parameters for use of this potential with NEMO INPUT: vo - velocity unit in km/s ro - length unit in kpc OUTPUT: accpars str...

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def all(self, fields=None, include_fields=True, page=None, per_page=None, extra_params=None): """Retrieves a list of all the applications. Important: The client_secret and encryption_key attributes can only be retrieved with the read:client_keys scope. Args: fields (list of ...

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def send_quick_chat(self, team_only, quick_chat): """ Sends a quick chat to the other bots. If it is QuickChats.CHAT_NONE or None it does not send a quick chat to other bots. :param team_only: either True or False, this says if the quick chat should only go to team members. :para...

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55

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def add_raw_code(self, string_or_list): """Add raw Gmsh code. """ if _is_string(string_or_list): self._GMSH_CODE.append(string_or_list) else: assert isinstance(string_or_list, list) for string in string_or_list: self._GMSH_CODE.append(s...

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def coarsen_matrix(Z, xlevel=0, ylevel=0, method='average'): """ This returns a coarsened numpy matrix. method can be 'average', 'maximum', or 'minimum' """ # coarsen x if not ylevel: Z_coarsened = Z else: temp = [] for z in Z: temp.append(coarsen_array(z, ylevel, m...

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def parse(text): """Try to parse into a date. Return: tuple (year, month, date) if successful; otherwise None. """ try: ymd = text.lower().split('-') assert len(ymd) == 3 year = -1 if ymd[0] in ('xx', 'xxxx') else int(ymd[0]) m...

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def convert_layer_to_pil(layer, apply_icc=True, **kwargs): """Convert Layer to PIL Image.""" from PIL import Image header = layer._psd._record.header if header.color_mode == ColorMode.BITMAP: raise NotImplementedError width, height = layer.width, layer.height channels, alpha = [], None ...

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def get_immoralities(self): """ Finds all the immoralities in the model A v-structure X -> Z <- Y is an immorality if there is no direct edge between X and Y . Returns ------- set: A set of all the immoralities in the model Examples --------- >>>...

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def xml_extract_date(node, xpath, date_format='%d/%m/%Y'): """ :param node: the node to be queried :param xpath: the path to fetch the child node that has the wanted date """ return datetime.strptime(xml_extract_text(node, xpath), date_format)

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43

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def remove_tags(self, tags, **kwargs): """ :param tags: Tags to remove from the app :type tags: array Removes the specified application name tags (aliases) from this app, so that it is no longer addressable by those aliases. The current user must be a developer of the a...

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39.5

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def _estimate_p_values(self): """estimate the p-values for all features """ if not self._is_fitted: raise AttributeError('GAM has not been fitted. Call fit first.') p_values = [] for term_i in range(len(self.terms)): p_values.append(self._compute_p_value(...

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31.181818

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def split_data(data, num_slice, batch_axis=0, even_split=True): """Splits an NDArray into `num_slice` slices along `batch_axis`. Usually used for data parallelism where each slices is sent to one device (i.e. GPU). Parameters ---------- data : NDArray A batch of data. num_slice : in...

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def _parse_current_member(self, previous_rank, values): """ Parses the column texts of a member row into a member dictionary. Parameters ---------- previous_rank: :class:`dict`[int, str] The last rank present in the rows. values: tuple[:class:`str`] ...

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37.333333

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def mf_aBl(self): """ These are the expected log likelihoods (node potentials) as seen from the discrete states. """ mf_aBl = self._mf_aBl = np.zeros((self.T, self.num_states)) ids, dds, eds = self.init_dynamics_distns, self.dynamics_distns, \ self.emission_di...

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def _parse_row(row): """Parses HTML row :param row: HTML row :return: list of values in row """ data = [] labels = HtmlTable._get_row_tag(row, "th") if labels: data += labels columns = HtmlTable._get_row_tag(row, "td") if columns: ...

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19.444444

20.5

def _accept_responses(self, expected_header, info_cb, timeout_ms=None): """Accepts responses until the expected header or a FAIL. Arguments: expected_header: OKAY or DATA info_cb: Optional callback for text sent from the bootloader. timeout_ms: Timeout in milliseconds to wait for each respons...

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def get_vlan_brief_input_request_type_get_next_request_last_rcvd_vlan_id(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") get_vlan_brief = ET.Element("get_vlan_brief") config = get_vlan_brief input = ET.SubElement(get_vlan_brief, "input") ...

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47.857143

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def query_remote_ref(self, remote, ref): """Query remote repo about given ref. :return: ``('tag', sha)`` if ref is a tag in remote ``('branch', sha)`` if ref is branch (aka "head") in remote ``(None, ref)`` if ref does not exist in remote. This happens ...

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49.333333

14.333333

def submit_jobs(root_dir, jobs, sgeargs=None): """ Submit each of the passed jobs to the SGE server, using the passed directory as root for SGE output. - root_dir Path to output directory - jobs List of Job objects """ waiting = list(jobs) # List of jobs still to...

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40.588235

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def OnFindToolbarToggle(self, event): """Search toolbar toggle event handler""" self.main_window.find_toolbar.SetGripperVisible(True) find_toolbar_info = self.main_window._mgr.GetPane("find_toolbar") self._toggle_pane(find_toolbar_info) event.Skip()

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28.4

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def times_csv(path, times, annotations=None, delimiter=',', fmt='%0.3f'): r"""Save time steps as in CSV format. This can be used to store the output of a beat-tracker or segmentation algorithm. If only `times` are provided, the file will contain each value of `times` on a row:: times[0]\n ...

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def message(self, data): """Function to display messages to the user """ msg = gtk.MessageDialog(None, gtk.DIALOG_MODAL, gtk.MESSAGE_INFO, gtk.BUTTONS_CLOSE, data) msg.set_resizable(1) msg.set_title(self.dialog_title) self.img.set_from_file...

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34.916667

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def delete(self, ids): """ Method to delete network-ipv4's by their ids :param ids: Identifiers of network-ipv4's :return: None """ url = build_uri_with_ids('api/v3/networkv4/%s/', ids) return super(ApiNetworkIPv4, self).delete(url)

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28.1

17.3

def reset(self): """ Resets the value of config item to its default value. """ old_value = self._value old_raw_str_value = self.raw_str_value self._value = not_set self.raw_str_value = not_set new_value = self._value if old_value is not_set: ...

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27.48

15.48

def toggleCollapseBefore( self ): """ Collapses the splitter before this handle. """ if ( self.isCollapsed() ): self.uncollapse() else: self.collapse( XSplitterHandle.CollapseDirection.Before )

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31.25

11.25

def readcols(infile, cols=[0, 1, 2, 3], hms=False): """ Read the columns from an ASCII file as numpy arrays. Parameters ---------- infile : str Filename of ASCII file with array data as columns. cols : list of int List of 0-indexed column numbers for columns to be turned into n...

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28.068182

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def _format_object(obj, format_type=None): """Depending on settings calls either `format_keys` or `format_field_names`""" if json_api_settings.FORMAT_KEYS is not None: return format_keys(obj, format_type) return format_field_names(obj, format_type)

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37.714286

14.571429

def bundle(self, app, results_dir): """Create a self-contained application bundle. The bundle will contain the target classes, dependencies and resources. """ assert(isinstance(app, BundleCreate.App)) bundle_dir = self.get_bundle_dir(app.id, results_dir) self.context.log.debug('creating {}'.fo...

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38.695652

23.5

def __process_by_ccore(self): """! @brief Performs cluster analysis using CCORE (C/C++ part of pyclustering library). """ (self.__clusters, self.__noise, self.__ordering, self.__eps, objects_indexes, objects_core_distances, objects_reachability_distances) = \ ...

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42.863636

28

def spidex_human(variant_obj): """Translate SPIDEX annotation to human readable string.""" if variant_obj.get('spidex') is None: return 'not_reported' elif abs(variant_obj['spidex']) < SPIDEX_HUMAN['low']['pos'][1]: return 'low' elif abs(variant_obj['spidex']) < SPIDEX_HUMAN['medium']['p...

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37.5

16.8

def connect(self, node="", rpcuser="", rpcpassword="", **kwargs): """ Connect to blockchain network (internal use only) """ if not node: if "node" in self.config: node = self.config["node"] else: raise ValueError("A Blockchain node needs to...

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37.9375

19.1875

def getCompressMod(self): ''' getCompressMod - Return the module used for compression on this field @return <module> - The module for compression ''' if self.compressMode == COMPRESS_MODE_ZLIB: return zlib if self.compressMode == COMPRESS_MODE_BZ2: return bz2 if self.compressMode == COMPRESS_MODE...

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35.428571

32.571429

def set_bookmarks(self, bookmarks): """ Store the sequence of bookmarks `bookmarks`. Causes signals to be fired to reflect the changes. .. note:: This should normally not be used. It does not mitigate the race condition between clients concurrently m...

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44.5

17.5

def pass_defaults(func): """Decorator that returns a function named wrapper. When invoked, wrapper invokes func with default kwargs appended. Parameters ---------- func : callable The function to append the default kwargs to """ @functools.wraps(func) def wrapper(self, *args, *...

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27.176471

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def plot_net(fignum): """ Draws circle and tick marks for equal area projection. """ # make the perimeter plt.figure(num=fignum,) plt.clf() plt.axis("off") Dcirc = np.arange(0, 361.) Icirc = np.zeros(361, 'f') Xcirc, Ycirc = [], [] for k in range(361): XY = pmag.dimap(Dc...

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26.519231

13.019231

def get_query_batch_request(self, batch_id, job_id=None): """ Fetch the request sent for the batch. Note should only used for query batches """ if not job_id: job_id = self.lookup_job_id(batch_id) url = self.endpoint + "/job/{}/batch/{}/request".format(job_id, batch_id) resp...

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45.888889

18.444444

def _fetch(self): """forces update of a local cached copy of the real object (regardless of the preference setting self.cache)""" if not self._obcache_current: from distob import engine ax = self._distaxis self._obcache = concatenate([ra._ob for ra in self._su...

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49.75

12.125

def new_format(self, navbar: BeautifulSoup, content: BeautifulSoup) -> List[str]: """ Extracts email message information if it uses the new Mailman format Args: content: BeautifulSoup Returns: List[str] """ sender = content.find(id='from').text.spli...

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41.84

22

def migrate_case(adapter: MongoAdapter, scout_case: dict, archive_data: dict): """Migrate case information from archive.""" # update collaborators collaborators = list(set(scout_case['collaborators'] + archive_data['collaborators'])) if collaborators != scout_case['collaborators']: LOG.info(f"se...

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43.254545

19.909091

def frame(y, frame_length=2048, hop_length=512): '''Slice a time series into overlapping frames. This implementation uses low-level stride manipulation to avoid redundant copies of the time series data. Parameters ---------- y : np.ndarray [shape=(n,)] Time series to frame. Must be one...

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34.121622

25.472973

def confd_state_internal_callpoints_notification_stream_replay_registration_type_file_file(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") confd_state = ET.SubElement(config, "confd-state", xmlns="http://tail-f.com/yang/confd-monitoring") internal = ET.S...

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54.235294

22.882353

def mget(self, pat=None): """ Get a dictionary mapping of all k:v pairs with key matching glob style expression `pat`. """ if pat is None: return {} expr = re.compile(fnmatch.translate(pat)) m = {} for key in tuple(self.keys()): #ma...

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31.6

10.666667

def SchemaValidateCtxt(self, reader, options): """Use W3C XSD schema context to validate the document as it is processed. Activation is only possible before the first Read(). If @ctxt is None, then XML Schema validation is deactivated. """ if reader is None: reader__o = No...

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50.555556

14.888889