kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def camelcase_underscore(name): """ Convert camelcase names to underscore """ s1 = re.sub('(.)([A-Z][a-z]+)', r'\1_\2', name) return re.sub('([a-z0-9])([A-Z])', r'\1_\2', s1).lower()	[ "def", "camelcase_underscore", "(", "name", ")", ":", "s1", "=", "re", ".", "sub", "(", "'(.)([A-Z][a-z]+)'", ",", "r'\\1_\\2'", ",", "name", ")", "return", "re", ".", "sub", "(", "'([a-z0-9])([A-Z])'", ",", "r'\\1_\\2'", ",", "s1", ")", ".", "lower", "(...	47.75	10
def nextprefix(self): """ Get the next available prefix. This means a prefix starting with 'ns' with a number appended as (ns0, ns1, ..) that is not already defined on the wsdl document. """ used = [ns[0] for ns in self.prefixes] used += [ns[0] for ns in self.wsd...	[ "def", "nextprefix", "(", "self", ")", ":", "used", "=", "[", "ns", "[", "0", "]", "for", "ns", "in", "self", ".", "prefixes", "]", "used", "+=", "[", "ns", "[", "0", "]", "for", "ns", "in", "self", ".", "wsdl", ".", "root", ".", "nsprefixes", ...	38.076923	14.692308
def main(unused_argv): """Run an agent.""" stopwatch.sw.enabled = FLAGS.profile or FLAGS.trace stopwatch.sw.trace = FLAGS.trace map_inst = maps.get(FLAGS.map) agent_classes = [] players = [] agent_module, agent_name = FLAGS.agent.rsplit(".", 1) agent_cls = getattr(importlib.import_module(agent_module...	[ "def", "main", "(", "unused_argv", ")", ":", "stopwatch", ".", "sw", ".", "enabled", "=", "FLAGS", ".", "profile", "or", "FLAGS", ".", "trace", "stopwatch", ".", "sw", ".", "trace", "=", "FLAGS", ".", "trace", "map_inst", "=", "maps", ".", "get", "("...	32.317073	23.268293
def train_local(self, closest_point, label_vector_description=None, N=None, pivot=True, **kwargs): """ Train the model in a Cannon-like fashion using the grid points as labels and the intensities as normalsied rest-frame fluxes within some local regime. """ lv = ...	[ "def", "train_local", "(", "self", ",", "closest_point", ",", "label_vector_description", "=", "None", ",", "N", "=", "None", ",", "pivot", "=", "True", ",", "", "", "kwargs", ")", ":", "lv", "=", "self", ".", "_cannon_label_vector", "if", "label_vector_...	43.242424	26.030303
def phone_numbers(self): """ Access the phone_numbers :returns: twilio.rest.proxy.v1.service.phone_number.PhoneNumberList :rtype: twilio.rest.proxy.v1.service.phone_number.PhoneNumberList """ if self._phone_numbers is None: self._phone_numbers = PhoneNumberLi...	[ "def", "phone_numbers", "(", "self", ")", ":", "if", "self", ".", "_phone_numbers", "is", "None", ":", "self", ".", "_phone_numbers", "=", "PhoneNumberList", "(", "self", ".", "_version", ",", "service_sid", "=", "self", ".", "_solution", "[", "'sid'", "]"...	40	20
def calculate_avg_score(res): """ private function Calculate the avg score of reviews present in res :param res: tuple of tuple returned from query_retrieve_comments_or_remarks :return: a float of the average score rounded to the closest 0.5 """ c_star_score = 6 avg_score = 0.0 nb_re...	[ "def", "calculate_avg_score", "(", "res", ")", ":", "c_star_score", "=", "6", "avg_score", "=", "0.0", "nb_reviews", "=", "0", "for", "comment", "in", "res", ":", "if", "comment", "[", "c_star_score", "]", ">", "0", ":", "avg_score", "+=", "comment", "["...	31.555556	14.37037
def as_property_description(self): """ Get the property description. Returns a dictionary describing the property. """ description = deepcopy(self.metadata) if 'links' not in description: description['links'] = [] description['links'].append( ...	[ "def", "as_property_description", "(", "self", ")", ":", "description", "=", "deepcopy", "(", "self", ".", "metadata", ")", "if", "'links'", "not", "in", "description", ":", "description", "[", "'links'", "]", "=", "[", "]", "description", "[", "'links'", ...	25	15.222222
def geometry_point(lat, lon, elev): """ GeoJSON point. Latitude and Longitude only have one value each :param list lat: Latitude values :param list lon: Longitude values :param float elev: Elevation value :return dict: """ logger_excel.info("enter geometry_point") coordinates = [] ...	[ "def", "geometry_point", "(", "lat", ",", "lon", ",", "elev", ")", ":", "logger_excel", ".", "info", "(", "\"enter geometry_point\"", ")", "coordinates", "=", "[", "]", "point_dict", "=", "OrderedDict", "(", ")", "for", "idx", ",", "val", "in", "enumerate"...	34.041667	12.458333
def isdir(path, *kwargs): """Check if path* is a directory""" import os.path return os.path.isdir(path, **kwargs)	[ "def", "isdir", "(", "path", ",", "", "", "kwargs", ")", ":", "import", "os", ".", "path", "return", "os", ".", "path", ".", "isdir", "(", "path", ",", "", "", "kwargs", ")" ]	31	9
def write(self, data): """Write string data to current process input stream.""" data = data.encode('utf-8') data_p = ctypes.create_string_buffer(data) num_bytes = PLARGE_INTEGER(LARGE_INTEGER(0)) bytes_to_write = len(data) success = WriteFile(self.conin_pipe, data_p, ...	[ "def", "write", "(", "self", ",", "data", ")", ":", "data", "=", "data", ".", "encode", "(", "'utf-8'", ")", "data_p", "=", "ctypes", ".", "create_string_buffer", "(", "data", ")", "num_bytes", "=", "PLARGE_INTEGER", "(", "LARGE_INTEGER", "(", "0", ")", ...	45	9.666667
def export(): r''' Restores the trained variables into a simpler graph that will be exported for serving. ''' log_info('Exporting the model...') from tensorflow.python.framework.ops import Tensor, Operation inputs, outputs, _ = create_inference_graph(batch_size=FLAGS.export_batch_size, n_steps=...	[ "def", "export", "(", ")", ":", "log_info", "(", "'Exporting the model...'", ")", "from", "tensorflow", ".", "python", ".", "framework", ".", "ops", "import", "Tensor", ",", "Operation", "inputs", ",", "outputs", ",", "_", "=", "create_inference_graph", "(", ...	47.103448	27.724138
def configure(self, args): """Configure the set of plugins with the given args. After configuration, disabled plugins are removed from the plugins list. """ for plug in self._plugins: plug_name = self.plugin_name(plug) plug.enabled = getattr(args, "plugin_%s" % p...	[ "def", "configure", "(", "self", ",", "args", ")", ":", "for", "plug", "in", "self", ".", "_plugins", ":", "plug_name", "=", "self", ".", "plugin_name", "(", "plug", ")", "plug", ".", "enabled", "=", "getattr", "(", "args", ",", "\"plugin_%s\"", "%", ...	50.214286	19.428571
def list_permissions(self, group_name=None, resource=None): """List permission sets associated filtering by group and/or resource. Args: group_name (string): Name of group. resource (intern.resource.boss.Resource): Identifies which data model object to operate on. Retur...	[ "def", "list_permissions", "(", "self", ",", "group_name", "=", "None", ",", "resource", "=", "None", ")", ":", "return", "self", ".", "service", ".", "list_permissions", "(", "group_name", ",", "resource", ",", "self", ".", "url_prefix", ",", "self", ".",...	40	25.533333
def received(self, limit=None): """ Returns all the events that have been received (excluding sent events), until a limit if defined Args: limit (int, optional): the max length of the events to return (Default value = None) Returns: list: a list of received events ...	[ "def", "received", "(", "self", ",", "limit", "=", "None", ")", ":", "return", "list", "(", "itertools", ".", "islice", "(", "(", "itertools", ".", "filterfalse", "(", "lambda", "x", ":", "x", "[", "1", "]", ".", "sent", ",", "self", ".", "store", ...	35.75	30.583333
def _add_genes_to_bed(in_file, gene_file, fai_file, out_file, data, max_distance=10000): """Re-usable subcomponent that annotates BED file genes from another BED """ try: input_rec = next(iter(pybedtools.BedTool(in_file))) except StopIteration: # empty file utils.copy_plus(in_file, out_...	[ "def", "_add_genes_to_bed", "(", "in_file", ",", "gene_file", ",", "fai_file", ",", "out_file", ",", "data", ",", "max_distance", "=", "10000", ")", ":", "try", ":", "input_rec", "=", "next", "(", "iter", "(", "pybedtools", ".", "BedTool", "(", "in_file", ...	59.394737	22.210526
def p_print_list_expr(p): """ print_elem : expr \| print_at \| print_tab \| attr \| BOLD expr \| ITALIC expr """ if p[1] in ('BOLD', 'ITALIC'): p[0] = make_sentence(p[1] + '_TMP', m...	[ "def", "p_print_list_expr", "(", "p", ")", ":", "if", "p", "[", "1", "]", "in", "(", "'BOLD'", ",", "'ITALIC'", ")", ":", "p", "[", "0", "]", "=", "make_sentence", "(", "p", "[", "1", "]", "+", "'_TMP'", ",", "make_typecast", "(", "TYPE", ".", ...	29.384615	12.615385
def main(): """Main entry point""" # Quit when interrupted import signal signal.signal(signal.SIGINT, signal.SIG_DFL) # Arguments: # --separator STRING/REGEX - how to split a row into cells (only relevant for CSV parser) # --flatten - flatten item hashes. {'a':{'b':'c'}} --> {'a_b':'c'} ...	[ "def", "main", "(", ")", ":", "# Quit when interrupted", "import", "signal", "signal", ".", "signal", "(", "signal", ".", "SIGINT", ",", "signal", ".", "SIG_DFL", ")", "# Arguments:", "# --separator STRING/REGEX - how to split a row into cells (only relevant for CSV parser)...	41.97619	27.928571
def print(self, args, kwargs): ''' Utility function that behaves identically to 'print' except it only prints if verbose ''' if self._last_args and self._last_args.verbose: print(args, **kwargs)	[ "def", "print", "(", "self", ",", "", "args", ",", "", "", "kwargs", ")", ":", "if", "self", ".", "_last_args", "and", "self", ".", "_last_args", ".", "verbose", ":", "print", "(", "", "args", ",", "", "", "kwargs", ")" ]	34.857143	19.428571
def run_pod(self, pod, startup_timeout=120, get_logs=True): # type: (Pod, int, bool) -> Tuple[State, Optional[str]] """ Launches the pod synchronously and waits for completion. Args: pod (Pod): startup_timeout (int): Timeout for startup of the pod (if pod is pendi...	[ "def", "run_pod", "(", "self", ",", "pod", ",", "startup_timeout", "=", "120", ",", "get_logs", "=", "True", ")", ":", "# type: (Pod, int, bool) -> Tuple[State, Optional[str]]", "resp", "=", "self", ".", "run_pod_async", "(", "pod", ")", "curr_time", "=", "dt", ...	41.15	15.05
def get(self, sid): """ Constructs a CredentialListContext :param sid: Fetch by unique credential list Sid :returns: twilio.rest.api.v2010.account.sip.credential_list.CredentialListContext :rtype: twilio.rest.api.v2010.account.sip.credential_list.CredentialListContext "...	[ "def", "get", "(", "self", ",", "sid", ")", ":", "return", "CredentialListContext", "(", "self", ".", "_version", ",", "account_sid", "=", "self", ".", "_solution", "[", "'account_sid'", "]", ",", "sid", "=", "sid", ",", ")" ]	41.9	27.9
def grant_db_access(conn, schema, table, role): r"""Gives access to database users/ groups Parameters ---------- conn : sqlalchemy connection object A valid connection to a database schema : str The database schema table : str The database table role : str da...	[ "def", "grant_db_access", "(", "conn", ",", "schema", ",", "table", ",", "role", ")", ":", "grant_str", "=", "\"\"\"GRANT ALL ON TABLE {schema}.{table}\n TO {role} WITH GRANT OPTION;\"\"\"", ".", "format", "(", "schema", "=", "schema", ",", "table", "=", "table", ...	27.8	15.75
def get(self, collection_id, content=None, **kwargs): """Syntactic sugar around to make it easier to get fine-grained access to the parts of a file without composing a PhyloSchema object. Possible invocations include: w.get('pg_10') w.get('pg_10', 'trees') w.g...	[ "def", "get", "(", "self", ",", "collection_id", ",", "content", "=", "None", ",", "", "", "kwargs", ")", ":", "assert", "COLLECTION_ID_PATTERN", ".", "match", "(", "collection_id", ")", "r", "=", "self", ".", "get_collection", "(", "collection_id", ")",...	40.8	11.666667
def clone(self, forced_version_date=None, in_bulk=False): """ Clones a Versionable and returns a fresh copy of the original object. Original source: ClonableMixin snippet (http://djangosnippets.org/snippets/1271), with the pk/id change suggested in the comments :param fo...	[ "def", "clone", "(", "self", ",", "forced_version_date", "=", "None", ",", "in_bulk", "=", "False", ")", ":", "if", "not", "self", ".", "pk", ":", "raise", "ValueError", "(", "'Instance must be saved before it can be cloned'", ")", "if", "self", ".", "version_...	43.059701	21.716418
def _set_attribute(self, attribute, name, value): """Device attribute setter""" try: if attribute is None: attribute = self._attribute_file_open( name ) else: attribute.seek(0) if isinstance(value, str): value = value.e...	[ "def", "_set_attribute", "(", "self", ",", "attribute", ",", "name", ",", "value", ")", ":", "try", ":", "if", "attribute", "is", "None", ":", "attribute", "=", "self", ".", "_attribute_file_open", "(", "name", ")", "else", ":", "attribute", ".", "seek",...	32.733333	13.066667
def make_success_response(self, result): """ Makes the python dict corresponding to the JSON that needs to be sent for a successful response. Result is the actual payload that gets sent. """ response = self.make_response(constants.RESPONSE_STATUS_SUCCESS) response[constants.RESPONSE_KEY_...	[ "def", "make_success_response", "(", "self", ",", "result", ")", ":", "response", "=", "self", ".", "make_response", "(", "constants", ".", "RESPONSE_STATUS_SUCCESS", ")", "response", "[", "constants", ".", "RESPONSE_KEY_RESULT", "]", "=", "result", "return", "r...	34.7	9.7
def funcFindPrfMltpPrdXVal(idxPrc, aryFuncChnkTrn, aryFuncChnkTst, aryPrfMdlsTrnConv, aryPrfMdlsTstConv, aryMdls, queOut): """ Function for finding be...	[ "def", "funcFindPrfMltpPrdXVal", "(", "idxPrc", ",", "aryFuncChnkTrn", ",", "aryFuncChnkTst", ",", "aryPrfMdlsTrnConv", ",", "aryPrfMdlsTstConv", ",", "aryMdls", ",", "queOut", ")", ":", "# Number of voxels to be fitted in this chunk:", "varNumVoxChnk", "=", "aryFuncChnkTrn...	36.24026	18.487013
def standard(target, mol_weight='pore.molecular_weight', density='pore.density'): r""" Calculates the molar density from the molecular weight and mass density Parameters ---------- target : OpenPNM Object The object for which these values are being calculated. This con...	[ "def", "standard", "(", "target", ",", "mol_weight", "=", "'pore.molecular_weight'", ",", "density", "=", "'pore.density'", ")", ":", "MW", "=", "target", "[", "mol_weight", "]", "rho", "=", "target", "[", "density", "]", "value", "=", "rho", "/", "MW", ...	31.590909	21.181818
def autocorrelation(x, lag): """ Calculates the autocorrelation of the specified lag, according to the formula [1] .. math:: \\frac{1}{(n-l)\sigma^{2}} \\sum_{t=1}^{n-l}(X_{t}-\\mu )(X_{t+l}-\\mu) where :math:`n` is the length of the time series :math:`X_i`, :math:`\sigma^2` its variance and ...	[ "def", "autocorrelation", "(", "x", ",", "lag", ")", ":", "# This is important: If a series is passed, the product below is calculated", "# based on the index, which corresponds to squaring the series.", "if", "type", "(", "x", ")", "is", "pd", ".", "Series", ":", "x", "=",...	32.04878	22.487805
def run_decider_state(self, decider_state, child_errors, final_outcomes_dict): """ Runs the decider state of the barrier concurrency state. The decider state decides on which outcome the barrier concurrency is left. :param decider_state: the decider state of the barrier concurrency state ...	[ "def", "run_decider_state", "(", "self", ",", "decider_state", ",", "child_errors", ",", "final_outcomes_dict", ")", ":", "decider_state", ".", "state_execution_status", "=", "StateExecutionStatus", ".", "ACTIVE", "# forward the decider specific data", "decider_state", ".",...	57.884615	23.653846
def build_ml_phyml(alignment, outfile, work_dir=".", **kwargs): """ build maximum likelihood tree of DNA seqs with PhyML """ phy_file = op.join(work_dir, "work", "aln.phy") AlignIO.write(alignment, file(phy_file, "w"), "phylip-relaxed") phyml_cl = PhymlCommandline(cmd=PHYML_BIN("phyml"), input=...	[ "def", "build_ml_phyml", "(", "alignment", ",", "outfile", ",", "work_dir", "=", "\".\"", ",", "", "", "kwargs", ")", ":", "phy_file", "=", "op", ".", "join", "(", "work_dir", ",", "\"work\"", ",", "\"aln.phy\"", ")", "AlignIO", ".", "write", "(", "a...	35.5	19.8
def search_engine(query, top=5, service="google", license=None, cache=os.path.join(DEFAULT_CACHE, "google")): """ Return a color aggregate from colors and ranges parsed from the web. T. De Smedt, http://nodebox.net/code/index.php/Prism """ # Check if we have cached information firs...	[ "def", "search_engine", "(", "query", ",", "top", "=", "5", ",", "service", "=", "\"google\"", ",", "license", "=", "None", ",", "cache", "=", "os", ".", "path", ".", "join", "(", "DEFAULT_CACHE", ",", "\"google\"", ")", ")", ":", "# Check if we have cac...	30.188679	18.188679
def getPaths(roots, ignores=None): """ Recursively walk a set of paths and return a listing of contained files. :param roots: Relative or absolute paths to files or folders. :type roots: :class:`~__builtins__.list` of :class:`~__builtins__.str` :param ignores: A list of :py:mod:`fnmatch` globs to ...	[ "def", "getPaths", "(", "roots", ",", "ignores", "=", "None", ")", ":", "paths", ",", "count", ",", "ignores", "=", "[", "]", ",", "0", ",", "ignores", "or", "[", "]", "# Prepare the ignores list for most efficient use", "ignore_re", "=", "multiglob_compile", ...	36.037037	21.555556
def errorReceived(self, merr): """ Called when an error message is received """ d, timeout = self._pendingCalls.get(merr.reply_serial, (None, None)) if timeout: timeout.cancel() if d: del self._pendingCalls[merr.reply_serial] e = error....	[ "def", "errorReceived", "(", "self", ",", "merr", ")", ":", "d", ",", "timeout", "=", "self", ".", "_pendingCalls", ".", "get", "(", "merr", ".", "reply_serial", ",", "(", "None", ",", "None", ")", ")", "if", "timeout", ":", "timeout", ".", "cancel",...	34.176471	13.352941
def get_runnable_effects(self) -> List[Effect]: """ Returns all runnable effects in the project. :return: List of all runnable effects """ return [effect for name, effect in self._effects.items() if effect.runnable]	[ "def", "get_runnable_effects", "(", "self", ")", "->", "List", "[", "Effect", "]", ":", "return", "[", "effect", "for", "name", ",", "effect", "in", "self", ".", "_effects", ".", "items", "(", ")", "if", "effect", ".", "runnable", "]" ]	36.571429	15.714286
def _GetUtf8Contents(self, file_name): """Check for errors in file_name and return a string for csv reader.""" contents = self._FileContents(file_name) if not contents: # Missing file return # Check for errors that will prevent csv.reader from working if len(contents) >= 2 and contents[0:2] ...	[ "def", "_GetUtf8Contents", "(", "self", ",", "file_name", ")", ":", "contents", "=", "self", ".", "_FileContents", "(", "file_name", ")", "if", "not", "contents", ":", "# Missing file", "return", "# Check for errors that will prevent csv.reader from working", "if", "l...	42.071429	21.035714
def patch_namespaced_resource_quota(self, name, namespace, body, **kwargs): # noqa: E501 """patch_namespaced_resource_quota # noqa: E501 partially update the specified ResourceQuota # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP req...	[ "def", "patch_namespaced_resource_quota", "(", "self", ",", "name", ",", "namespace", ",", "body", ",", "", "", "kwargs", ")", ":", "# noqa: E501", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'async_req'", ...	62.32	35.24
def env(self): """ Dict of all environment variables that will be run with this command. """ env_vars = os.environ.copy() env_vars.update(self._env) new_path = ":".join( self._paths + [env_vars["PATH"]] if "PATH" in env_vars else [] + self._paths ) ...	[ "def", "env", "(", "self", ")", ":", "env_vars", "=", "os", ".", "environ", ".", "copy", "(", ")", "env_vars", ".", "update", "(", "self", ".", "_env", ")", "new_path", "=", "\":\"", ".", "join", "(", "self", ".", "_paths", "+", "[", "env_vars", ...	34	14
def derivatives(self, x, y, Rs, theta_Rs, e1, e2, center_x=0, center_y=0): """ returns df/dx and df/dy of the function (integral of NFW) """ phi_G, q = param_util.ellipticity2phi_q(e1, e2) x_shift = x - center_x y_shift = y - center_y cos_phi = np.cos(phi_G) ...	[ "def", "derivatives", "(", "self", ",", "x", ",", "y", ",", "Rs", ",", "theta_Rs", ",", "e1", ",", "e2", ",", "center_x", "=", "0", ",", "center_y", "=", "0", ")", ":", "phi_G", ",", "q", "=", "param_util", ".", "ellipticity2phi_q", "(", "e1", ",...	41.545455	13.636364
def UpsertUserDefinedFunction(self, collection_link, udf, options=None): """Upserts a user defined function in a collection. :param str collection_link: The link to the collection. :param str udf: :param dict options: The request options for the request. ...	[ "def", "UpsertUserDefinedFunction", "(", "self", ",", "collection_link", ",", "udf", ",", "options", "=", "None", ")", ":", "if", "options", "is", "None", ":", "options", "=", "{", "}", "collection_id", ",", "path", ",", "udf", "=", "self", ".", "_GetCon...	29.52	17.44
def search(self, *kwargs): """ Query using ElasticSearch, returning an elasticsearch queryset. :param kwargs: keyword arguments (optional) query : ES Query spec * tags : content tags * types : content types * feature_types : featured types * publi...	[ "def", "search", "(", "self", ",", "", "", "kwargs", ")", ":", "search_query", "=", "super", "(", "ContentManager", ",", "self", ")", ".", "search", "(", ")", "if", "\"query\"", "in", "kwargs", ":", "search_query", "=", "search_query", ".", "query", ...	40.62	22.66
def convert_sum(node, **kwargs): """Map MXNet's sum operator attributes to onnx's ReduceSum operator and return the created node. """ name, input_nodes, attrs = get_inputs(node, kwargs) mx_axis = attrs.get("axis", None) axes = convert_string_to_list(str(mx_axis)) if mx_axis is not None else Non...	[ "def", "convert_sum", "(", "node", ",", "", "", "kwargs", ")", ":", "name", ",", "input_nodes", ",", "attrs", "=", "get_inputs", "(", "node", ",", "kwargs", ")", "mx_axis", "=", "attrs", ".", "get", "(", "\"axis\"", ",", "None", ")", "axes", "=", ...	27.344828	17.827586
def first(self): """ Return the first element. """ if self.mode == 'local': return self.values[0] if self.mode == 'spark': return self.values.first().toarray()	[ "def", "first", "(", "self", ")", ":", "if", "self", ".", "mode", "==", "'local'", ":", "return", "self", ".", "values", "[", "0", "]", "if", "self", ".", "mode", "==", "'spark'", ":", "return", "self", ".", "values", ".", "first", "(", ")", ".",...	24	11.333333
def update(self, symbol, data, metadata=None, upsert=True, as_of=None, **kwargs): """ Append 'data' under the specified 'symbol' name to this library. Parameters ---------- symbol : `str` symbol name for the item data : `pd.DataFrame` to be persisted ...	[ "def", "update", "(", "self", ",", "symbol", ",", "data", ",", "metadata", "=", "None", ",", "upsert", "=", "True", ",", "as_of", "=", "None", ",", "", "", "kwargs", ")", ":", "local_tz", "=", "mktz", "(", ")", "if", "not", "as_of", ":", "as_of...	41.483871	19
def close(self): """Set some objects to None to hopefully free up some memory.""" self._target_context_errors = None self._query_context_errors = None self._general_errors = None for ae in self._alignment_errors: ae.close() self._alignment_errors = None	[ "def", "close", "(", "self", ")", ":", "self", ".", "_target_context_errors", "=", "None", "self", ".", "_query_context_errors", "=", "None", "self", ".", "_general_errors", "=", "None", "for", "ae", "in", "self", ".", "_alignment_errors", ":", "ae", ".", ...	34.5	9
def build(self, root, schema): """ Build the syntax tree for kubectl command line """ if schema.get("subcommands") and schema["subcommands"]: for subcmd, childSchema in schema["subcommands"].items(): child = CommandTree(node=subcmd) child = self.build(child, c...	[ "def", "build", "(", "self", ",", "root", ",", "schema", ")", ":", "if", "schema", ".", "get", "(", "\"subcommands\"", ")", "and", "schema", "[", "\"subcommands\"", "]", ":", "for", "subcmd", ",", "childSchema", "in", "schema", "[", "\"subcommands\"", "]...	49	12.058824
def web_agent(self, reactor, socks_endpoint, pool=None): """ :param socks_endpoint: create one with :meth:`txtorcon.TorConfig.create_socks_endpoint`. Can be a Deferred. :param pool: passed on to the Agent (as ``pool=``) """ # local import because there is...	[ "def", "web_agent", "(", "self", ",", "reactor", ",", "socks_endpoint", ",", "pool", "=", "None", ")", ":", "# local import because there isn't Agent stuff on some", "# platforms we support, so this will only error if you try", "# this on the wrong platform (pypy [??] and old-twisted...	34.944444	17.611111
def insert_weave_option_group(parser): """ Adds the options used to specify weave options. Parameters ---------- parser : object OptionParser instance """ optimization_group = parser.add_argument_group("Options for controlling " "weave") optim...	[ "def", "insert_weave_option_group", "(", "parser", ")", ":", "optimization_group", "=", "parser", ".", "add_argument_group", "(", "\"Options for controlling \"", "\"weave\"", ")", "optimization_group", ".", "add_argument", "(", "\"--per-process-weave-cache\"", ",", "action"...	40.72973	18.108108
def conjugate(self): """Quaternion conjugate, encapsulated in a new instance. For a unit quaternion, this is the same as the inverse. Returns: A new Quaternion object clone with its vector part negated """ return self.__class__(scalar=self.scalar, vector= -self.vect...	[ "def", "conjugate", "(", "self", ")", ":", "return", "self", ".", "__class__", "(", "scalar", "=", "self", ".", "scalar", ",", "vector", "=", "-", "self", ".", "vector", ")" ]	35	23.111111
def parse_dimension(self, node): """ Parses <Dimension> @param node: Node containing the <Dimension> element @type node: xml.etree.Element @raise ParseError: When the name is not a string or if the dimension is not a signed integer. """ try: ...	[ "def", "parse_dimension", "(", "self", ",", "node", ")", ":", "try", ":", "name", "=", "node", ".", "lattrib", "[", "'name'", "]", "except", ":", "self", ".", "raise_error", "(", "'<Dimension> must specify a name'", ")", "description", "=", "node", ".", "l...	28.73913	20.73913
def export_tour(tour_steps, name=None, filename="my_tour.js", url=None): """ Exports a tour as a JS file. It will include necessary resources as well, such as jQuery. You'll be able to copy the tour directly into the Console of any web browser to play the tour outside of SeleniumBase runs. "...	[ "def", "export_tour", "(", "tour_steps", ",", "name", "=", "None", ",", "filename", "=", "\"my_tour.js\"", ",", "url", "=", "None", ")", ":", "if", "not", "name", ":", "name", "=", "\"default\"", "if", "name", "not", "in", "tour_steps", ":", "raise", "...	41.242775	15.306358
def _save_potentials(self, directory): """save potentials to a directory """ print('saving potentials') digits = int(np.ceil(np.log10(self.configs.configs.shape[0]))) for i in range(0, self.configs.configs.shape[0]): pot_data = self.get_potential(i) filena...	[ "def", "_save_potentials", "(", "self", ",", "directory", ")", ":", "print", "(", "'saving potentials'", ")", "digits", "=", "int", "(", "np", ".", "ceil", "(", "np", ".", "log10", "(", "self", ".", "configs", ".", "configs", ".", "shape", "[", "0", ...	40.5	12.944444
def _try_weakref(arg, remove_callback): """Return a weak reference to arg if possible, or arg itself if not.""" try: arg = weakref.ref(arg, remove_callback) except TypeError: # Not all types can have a weakref. That includes strings # and floats and such, so just pass them through di...	[ "def", "_try_weakref", "(", "arg", ",", "remove_callback", ")", ":", "try", ":", "arg", "=", "weakref", ".", "ref", "(", "arg", ",", "remove_callback", ")", "except", "TypeError", ":", "# Not all types can have a weakref. That includes strings", "# and floats and such...	38.555556	18.222222
def Input_setIgnoreInputEvents(self, ignore): """ Function path: Input.setIgnoreInputEvents Domain: Input Method name: setIgnoreInputEvents Parameters: Required arguments: 'ignore' (type: boolean) -> Ignores input events processing when set to true. No return value. Description: Ignore...	[ "def", "Input_setIgnoreInputEvents", "(", "self", ",", "ignore", ")", ":", "assert", "isinstance", "(", "ignore", ",", "(", "bool", ",", ")", ")", ",", "\"Argument 'ignore' must be of type '['bool']'. Received type: '%s'\"", "%", "type", "(", "ignore", ")", "subdom_...	31.684211	20.526316
def usnjrnl_timeline(self): """Iterates over the changes occurred within the filesystem. Yields UsnJrnlEvent namedtuples containing: file_reference_number: known in Unix FS as inode. path: full path of the file. size: size of the file in bytes if recoverable. ...	[ "def", "usnjrnl_timeline", "(", "self", ")", ":", "filesystem_content", "=", "defaultdict", "(", "list", ")", "self", ".", "logger", ".", "debug", "(", "\"Extracting Update Sequence Number journal.\"", ")", "journal", "=", "self", ".", "_read_journal", "(", ")", ...	36.56	20.2
def register(self, job): """Takes a job (unencoded) and adorns it with a unique key; this makes an entry in the database without any further specification.""" with self.lock: self.cur.execute( 'insert into "jobs" ("name", "session", "status") ' 'values...	[ "def", "register", "(", "self", ",", "job", ")", ":", "with", "self", ".", "lock", ":", "self", ".", "cur", ".", "execute", "(", "'insert into \"jobs\" (\"name\", \"session\", \"status\") '", "'values (?, ?, ?)'", ",", "(", "job", ".", "name", ",", "self", "."...	52.777778	15
def reject(self, *, requeue=True): """ Reject the message. :keyword bool requeue: if true, the broker will attempt to requeue the message and deliver it to an alternate consumer. """ self.sender.send_BasicReject(self.delivery_tag, requeue)	[ "def", "reject", "(", "self", ",", "*", ",", "requeue", "=", "True", ")", ":", "self", ".", "sender", ".", "send_BasicReject", "(", "self", ".", "delivery_tag", ",", "requeue", ")" ]	35.625	17.625
def _iter_frequencies(q, frange, mismatch, dur): """Iterate over the frequencies of this 'QPlane' Parameters ---------- q: q value frange: 'list' upper and lower bounds of frequency range mismatch: percentage of desired fractional mismatch dur: duration of ti...	[ "def", "_iter_frequencies", "(", "q", ",", "frange", ",", "mismatch", ",", "dur", ")", ":", "# work out how many frequencies we need", "minf", ",", "maxf", "=", "frange", "fcum_mismatch", "=", "log", "(", "float", "(", "maxf", ")", "/", "minf", ")", "*", "...	28.064516	18.225806
def subplot(self, index_x, index_y): """ Sets the active subplot. Parameters ---------- index_x : int Index of the subplot to activate in the x direction. index_y : int Index of the subplot to activate in the y direction. """ sel...	[ "def", "subplot", "(", "self", ",", "index_x", ",", "index_y", ")", ":", "self", ".", "_active_renderer_index", "=", "self", ".", "loc_to_index", "(", "(", "index_x", ",", "index_y", ")", ")" ]	26.5	21.214286
def create_tmp_rootdir(self): """ create a rootdir that we can destroy later again Returns ------- """ if self.rootdir: tmp_rootdir = tempfile.mkdtemp(prefix='bcolz-') self._dir_clean_list.append(tmp_rootdir) else: tmp_rootdir...	[ "def", "create_tmp_rootdir", "(", "self", ")", ":", "if", "self", ".", "rootdir", ":", "tmp_rootdir", "=", "tempfile", ".", "mkdtemp", "(", "prefix", "=", "'bcolz-'", ")", "self", ".", "_dir_clean_list", ".", "append", "(", "tmp_rootdir", ")", "else", ":",...	24.357143	18.214286
def preserve_channel_dim(func): """Preserve dummy channel dim.""" @wraps(func) def wrapped_function(img, args, kwargs): shape = img.shape result = func(img, args, **kwargs) if len(shape) == 3 and shape[-1] == 1 and len(result.shape) == 2: result = np.expand_dims(resul...	[ "def", "preserve_channel_dim", "(", "func", ")", ":", "@", "wraps", "(", "func", ")", "def", "wrapped_function", "(", "img", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "shape", "=", "img", ".", "shape", "result", "=", "func", "(", "img", ...	33.818182	15.909091
def _pack3(obj, fp, **options): """ Serialize a Python object into MessagePack bytes. Args: obj: a Python object fp: a .write()-supporting file-like object Kwargs: ext_handlers (dict): dictionary of Ext handlers, mapping a custom type to a callable ...	[ "def", "_pack3", "(", "obj", ",", "fp", ",", "", "", "options", ")", ":", "global", "compatibility", "ext_handlers", "=", "options", ".", "get", "(", "\"ext_handlers\"", ")", "if", "obj", "is", "None", ":", "_pack_nil", "(", "obj", ",", "fp", ",", ...	34.628571	16.914286
def session_exists(self, username): """ :param username: :type username: str :return: :rtype: """ logger.debug("session_exists(%s)?" % username) return self._store.containsSession(username, 1)	[ "def", "session_exists", "(", "self", ",", "username", ")", ":", "logger", ".", "debug", "(", "\"session_exists(%s)?\"", "%", "username", ")", "return", "self", ".", "_store", ".", "containsSession", "(", "username", ",", "1", ")" ]	27.555556	12.444444
async def query( self, q: AnyStr, *, epoch: str = 'ns', chunked: bool = False, chunk_size: Optional[int] = None, db: Optional[str] = None, use_cache: bool = False, ) -> Union[AsyncGenerator[ResultType, None], ResultType]: """Sends a query to In...	[ "async", "def", "query", "(", "self", ",", "q", ":", "AnyStr", ",", "*", ",", "epoch", ":", "str", "=", "'ns'", ",", "chunked", ":", "bool", "=", "False", ",", "chunk_size", ":", "Optional", "[", "int", "]", "=", "None", ",", "db", ":", "Optional...	44.22619	19.797619
def write_metadata(self, handler): """ set the meta data """ if self.metadata is not None: handler.write_metadata(self.cname, self.metadata)	[ "def", "write_metadata", "(", "self", ",", "handler", ")", ":", "if", "self", ".", "metadata", "is", "not", "None", ":", "handler", ".", "write_metadata", "(", "self", ".", "cname", ",", "self", ".", "metadata", ")" ]	41.25	7.5
def assign_default_log_values(self, fpath, line, formatter): ''' >>> lc = LogCollector('file=/path/to/log_file.log:formatter=logagg.formatters.basescript', 30) >>> from pprint import pprint >>> formatter = 'logagg.formatters.mongodb' >>> fpath = '/var/log/mongodb/mongodb.log' ...	[ "def", "assign_default_log_values", "(", "self", ",", "fpath", ",", "line", ",", "formatter", ")", ":", "return", "dict", "(", "id", "=", "None", ",", "file", "=", "fpath", ",", "host", "=", "self", ".", "HOST", ",", "formatter", "=", "formatter", ",",...	31.526316	18.526316
def find_unused_port(start_port, end_port, host="127.0.0.1", socket_type="TCP", ignore_ports=None): """ Finds an unused port in a range. :param start_port: first port in the range :param end_port: last port in the range :param host: host/address for bind() :param socket_...	[ "def", "find_unused_port", "(", "start_port", ",", "end_port", ",", "host", "=", "\"127.0.0.1\"", ",", "socket_type", "=", "\"TCP\"", ",", "ignore_ports", "=", "None", ")", ":", "if", "end_port", "<", "start_port", ":", "raise", "HTTPConflict", "(", "text", ...	46.657143	27.4
def estimate_augmented_markov_model(dtrajs, ftrajs, lag, m, sigmas, count_mode='sliding', connectivity='largest', dt_traj='1 step', maxiter=1000000, eps=0.05, maxcache=3000): r""" Estimates an Augmented Markov model from discrete trajectories and experimental dat...	[ "def", "estimate_augmented_markov_model", "(", "dtrajs", ",", "ftrajs", ",", "lag", ",", "m", ",", "sigmas", ",", "count_mode", "=", "'sliding'", ",", "connectivity", "=", "'largest'", ",", "dt_traj", "=", "'1 step'", ",", "maxiter", "=", "1000000", ",", "ep...	42.453947	27.006579
def run(self): """ Append version number to lsqfit/__init__.py """ with open('src/lsqfit/__init__.py', 'a') as lsfile: lsfile.write("\n__version__ = '%s'\n" % LSQFIT_VERSION) _build_py.run(self)	[ "def", "run", "(", "self", ")", ":", "with", "open", "(", "'src/lsqfit/__init__.py'", ",", "'a'", ")", "as", "lsfile", ":", "lsfile", ".", "write", "(", "\"\\n__version__ = '%s'\\n\"", "%", "LSQFIT_VERSION", ")", "_build_py", ".", "run", "(", "self", ")" ]	45.2	17
def _get_build_type(fnames, samples, caller): """Confirm we should build a gemini database: need gemini in tools_on. Checks for valid conditions for running a database and gemini or gemini_orig configured in tools on. """ build_type = set() if any(vcfutils.vcf_has_variants(f) for f in fnames) a...	[ "def", "_get_build_type", "(", "fnames", ",", "samples", ",", "caller", ")", ":", "build_type", "=", "set", "(", ")", "if", "any", "(", "vcfutils", ".", "vcf_has_variants", "(", "f", ")", "for", "f", "in", "fnames", ")", "and", "caller", "not", "in", ...	52.47619	29.095238
def apply(self): """Apply the rules of the context to its occurrences. This method executes all the functions defined in self.tasks in the order they are listed. Every function that acts as a context task receives the Context object itself as its only argument. The con...	[ "def", "apply", "(", "self", ")", ":", "raw_operations", "=", "copy", ".", "deepcopy", "(", "self", ".", "occurrences", ")", "for", "task", "in", "self", ".", "tasks", ":", "task", "(", "self", ")", "self", ".", "occurrences", "=", "raw_operations" ]	33.555556	18.444444
def _add_dot_key(self, section, key=None): """ :param str section: Config section :param str key: Config key """ if key: self._dot_keys[self._to_dot_key(section, key)] = (section, key) else: self._dot_keys[self._to_dot_key(section)] = section	[ "def", "_add_dot_key", "(", "self", ",", "section", ",", "key", "=", "None", ")", ":", "if", "key", ":", "self", ".", "_dot_keys", "[", "self", ".", "_to_dot_key", "(", "section", ",", "key", ")", "]", "=", "(", "section", ",", "key", ")", "else", ...	34	13.333333
def triangle_areas(p1,p2,p3): """Compute an array of triangle areas given three arrays of triangle pts p1,p2,p3 - three Nx2 arrays of points """ v1 = (p2 - p1).astype(np.float) v2 = (p3 - p1).astype(np.float) # Original: # cross1 = v1[:,1] * v2[:,0] # cross2 = v2[:,1] * v1[:,0] ...	[ "def", "triangle_areas", "(", "p1", ",", "p2", ",", "p3", ")", ":", "v1", "=", "(", "p2", "-", "p1", ")", ".", "astype", "(", "np", ".", "float", ")", "v2", "=", "(", "p3", "-", "p1", ")", ".", "astype", "(", "np", ".", "float", ")", "# Ori...	25.481481	16.037037
def get_all_groups(path_prefix='/', region=None, key=None, keyid=None, profile=None): ''' Get and return all IAM group details, starting at the optional path. .. versionadded:: 2016.3.0 CLI Example: salt-call boto_iam.get_all_groups ''' conn = _get_conn(region=region,...	[ "def", "get_all_groups", "(", "path_prefix", "=", "'/'", ",", "region", "=", "None", ",", "key", "=", "None", ",", "keyid", "=", "None", ",", "profile", "=", "None", ")", ":", "conn", "=", "_get_conn", "(", "region", "=", "region", ",", "key", "=", ...	34.807692	27.115385
def fire_event(self, event_name, wait=False, args, *kwargs): """ Fire an event to plugins. PluginManager schedule @asyncio.coroutinecalls for each plugin on method called "on_" + event_name For example, on_connect will be called on event 'connect' Method calls are schedule in t...	[ "def", "fire_event", "(", "self", ",", "event_name", ",", "wait", "=", "False", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "tasks", "=", "[", "]", "event_method_name", "=", "\"on_\"", "+", "event_name", "for", "plugin", "in", "self", ".", "...	42.27027	22.108108
def from_definition(self, table: Table, version: int): """Add all columns from the table added in the specified version""" self.table(table) self.add_columns(*table.columns.get_with_version(version)) return self	[ "def", "from_definition", "(", "self", ",", "table", ":", "Table", ",", "version", ":", "int", ")", ":", "self", ".", "table", "(", "table", ")", "self", ".", "add_columns", "(", "*", "table", ".", "columns", ".", "get_with_version", "(", "version", ")...	47.8	15.2
def restbase(self, endpoint, title): """ Returns RESTBase query string """ if not endpoint: raise ValueError("invalid endpoint: %s" % endpoint) route = endpoint if title and endpoint != '/page/': route = endpoint + safequote_restbase(title) ...	[ "def", "restbase", "(", "self", ",", "endpoint", ",", "title", ")", ":", "if", "not", "endpoint", ":", "raise", "ValueError", "(", "\"invalid endpoint: %s\"", "%", "endpoint", ")", "route", "=", "endpoint", "if", "title", "and", "endpoint", "!=", "'/page/'",...	28.857143	15.714286
def validate_event(payload: bytes, *, signature: str, secret: str) -> None: """Validate the signature of a webhook event.""" # https://developer.github.com/webhooks/securing/#validating-payloads-from-github signature_prefix = "sha1=" if not signature.startswith(signature_prefix): raise Validatio...	[ "def", "validate_event", "(", "payload", ":", "bytes", ",", "*", ",", "signature", ":", "str", ",", "secret", ":", "str", ")", "->", "None", ":", "# https://developer.github.com/webhooks/securing/#validating-payloads-from-github", "signature_prefix", "=", "\"sha1=\"", ...	62.25	22.916667
def format_title(self, format='html5', deparagraph=True, mathjax=False, smart=True, extra_args=None): """Get the document title in the specified markup format. Parameters ---------- format : `str`, optional Output format (such as ``'html5'`` or ``'plain'...	[ "def", "format_title", "(", "self", ",", "format", "=", "'html5'", ",", "deparagraph", "=", "True", ",", "mathjax", "=", "False", ",", "smart", "=", "True", ",", "extra_args", "=", "None", ")", ":", "if", "self", ".", "title", "is", "None", ":", "ret...	35.352941	16.470588
def is_training_name(name): """ Guess if this variable is only used in training. Only used internally to avoid too many logging. Do not use it. """ # TODO: maybe simply check against TRAINABLE_VARIABLES and MODEL_VARIABLES? # TODO or use get_slot_names() name = get_op_tensor_name(name)[0...	[ "def", "is_training_name", "(", "name", ")", ":", "# TODO: maybe simply check against TRAINABLE_VARIABLES and MODEL_VARIABLES?", "# TODO or use get_slot_names()", "name", "=", "get_op_tensor_name", "(", "name", ")", "[", "0", "]", "if", "name", ".", "endswith", "(", "'/Ad...	37.28	18
def sync_required(func): """Decorate methods when synchronizing repository is required.""" @wraps(func) def wrapper(self, args, kwargs): if not self._keepSynchronized: r = func(self, args, **kwargs) else: state = self._load_state() #print("----------->...	[ "def", "sync_required", "(", "func", ")", ":", "@", "wraps", "(", "func", ")", "def", "wrapper", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "if", "not", "self", ".", "_keepSynchronized", ":", "r", "=", "func", "(", "self", ...	38.166667	15.555556
def nodes_with_tag(tag): """Sets a list of nodes that have the given tag assigned and calls node()""" nodes = lib.get_nodes_with_tag(tag, env.chef_environment, littlechef.include_guests) nodes = [n['name'] for n in nodes] if not len(nodes): print("No nodes foun...	[ "def", "nodes_with_tag", "(", "tag", ")", ":", "nodes", "=", "lib", ".", "get_nodes_with_tag", "(", "tag", ",", "env", ".", "chef_environment", ",", "littlechef", ".", "include_guests", ")", "nodes", "=", "[", "n", "[", "'name'", "]", "for", "n", "in", ...	42.888889	14.888889
def distribute_libs(self, arch, src_dirs, wildcard='*', dest_dir="libs"): '''Copy existing arch libs from build dirs to current dist dir.''' info('Copying libs') tgt_dir = join(dest_dir, arch.arch) ensure_dir(tgt_dir) for src_dir in src_dirs: for lib in glob.glob(join...	[ "def", "distribute_libs", "(", "self", ",", "arch", ",", "src_dirs", ",", "wildcard", "=", "'*'", ",", "dest_dir", "=", "\"libs\"", ")", ":", "info", "(", "'Copying libs'", ")", "tgt_dir", "=", "join", "(", "dest_dir", ",", "arch", ".", "arch", ")", "e...	48.125	16.375
def alias(name, class_object): """ Create an alias of a class object The objective of this method is to have an alias that is Registered. i.e If we have class_b = class_a Makes `class_b` an alias of `class_a`, but if `class_a` is registered by its metaclass, `class_b` is not. The ...	[ "def", "alias", "(", "name", ",", "class_object", ")", ":", "module", "=", "inspect", ".", "getmodule", "(", "class_object", ")", "module", ".", "__dict__", "[", "name", "]", "=", "class_object", "if", "isinstance", "(", "class_object", ",", "Registry", ")...	25.125	14.625
def part_channel(self, channel, reason=None, tags=None): """Part the given channel.""" params = [channel] if reason: params.append(reason) self.send('PART', params=params, tags=tags)	[ "def", "part_channel", "(", "self", ",", "channel", ",", "reason", "=", "None", ",", "tags", "=", "None", ")", ":", "params", "=", "[", "channel", "]", "if", "reason", ":", "params", ".", "append", "(", "reason", ")", "self", ".", "send", "(", "'PA...	36.833333	11.666667
def envars_to_markdown(envars, title = "Environment"): '''generate a markdown list of a list of environment variable tuples Parameters ========== title: A title for the section (defaults to "Environment" envars: a list of tuples for the environment, e.g.: [('TERM', 'xterm-2...	[ "def", "envars_to_markdown", "(", "envars", ",", "title", "=", "\"Environment\"", ")", ":", "markdown", "=", "''", "if", "envars", "not", "in", "[", "None", ",", "''", ",", "[", "]", "]", ":", "markdown", "+=", "'\\n## %s\\n'", "%", "title", "for", "en...	32.7	19.8
def _validate_json_for_regular_workflow(json_spec, args): """ Validates fields used only for building a regular, project-based workflow. """ validated = {} override_project_id, override_folder, override_workflow_name = \ dxpy.executable_builder.get_parsed_destination(args.destination) va...	[ "def", "_validate_json_for_regular_workflow", "(", "json_spec", ",", "args", ")", ":", "validated", "=", "{", "}", "override_project_id", ",", "override_folder", ",", "override_workflow_name", "=", "dxpy", ".", "executable_builder", ".", "get_parsed_destination", "(", ...	43.5625	23.6875
def inheritdoc(parent): """Inherit documentation from a parent Parameters ---------- parent : callable The parent function or class that contains the sought-after docstring. If it doesn't have a docstring, this might behave in unexpected ways. Examples -------- ...	[ "def", "inheritdoc", "(", "parent", ")", ":", "def", "wrapper", "(", "func", ")", ":", "# Assign the parent docstring to the child", "func", ".", "__doc__", "=", "parent", ".", "__doc__", "@", "wraps", "(", "func", ")", "def", "caller", "(", "*", "args", "...	22.571429	20.257143
def iam_configuration(self): """Retrieve IAM configuration for this bucket. :rtype: :class:`IAMConfiguration` :returns: an instance for managing the bucket's IAM configuration. """ info = self._properties.get("iamConfiguration", {}) return IAMConfiguration.from_api_repr(...	[ "def", "iam_configuration", "(", "self", ")", ":", "info", "=", "self", ".", "_properties", ".", "get", "(", "\"iamConfiguration\"", ",", "{", "}", ")", "return", "IAMConfiguration", ".", "from_api_repr", "(", "info", ",", "self", ")" ]	40.5	15.375
def _ParseEntry(self, key, val): """Adds an entry for a configuration setting. Args: key: The name of the setting. val: The value of the setting. """ if key in self._repeated: setting = self.section.setdefault(key, []) setting.extend(val) else: self.section.setdefault(...	[ "def", "_ParseEntry", "(", "self", ",", "key", ",", "val", ")", ":", "if", "key", "in", "self", ".", "_repeated", ":", "setting", "=", "self", ".", "section", ".", "setdefault", "(", "key", ",", "[", "]", ")", "setting", ".", "extend", "(", "val", ...	26.5	12.833333
def _readFile(self, sldir, fileName, sep): ''' Private method that reads in the header and column data. ''' if sldir.endswith(os.sep): fileName = str(sldir)+str(fileName) else: fileName = str(sldir)+os.sep+str(fileName) fileLines=[] #list of li...	[ "def", "_readFile", "(", "self", ",", "sldir", ",", "fileName", ",", "sep", ")", ":", "if", "sldir", ".", "endswith", "(", "os", ".", "sep", ")", ":", "fileName", "=", "str", "(", "sldir", ")", "+", "str", "(", "fileName", ")", "else", ":", "file...	31	15.505051
def proxy_protocol(self, error='raise', default=None, limit=None, authenticate=False): """ Parses, and optionally authenticates, proxy protocol information from request. Note that ``self.request`` is wrapped by ``SocketBuffer``. :param error: How read (``exc.ReadError``) and...	[ "def", "proxy_protocol", "(", "self", ",", "error", "=", "'raise'", ",", "default", "=", "None", ",", "limit", "=", "None", ",", "authenticate", "=", "False", ")", ":", "if", "error", "not", "in", "(", "'raise'", ",", "'unread'", ")", ":", "raise", "...	37.938776	18.755102
def receive(self, event_type, signature, data_str): """Receive a web hook for the event and signature. Args: event_type (str): Name of the event that was received (from the request ``X-HelpScout-Event`` header). signature (str): The signature that was received, w...	[ "def", "receive", "(", "self", ",", "event_type", ",", "signature", ",", "data_str", ")", ":", "if", "not", "self", ".", "validate_signature", "(", "signature", ",", "data_str", ")", ":", "raise", "HelpScoutSecurityException", "(", "'The signature provided by this...	39.875	23.84375
def explore(node): """ Given a node, explores on relatives, siblings and children :param node: GraphNode from which to explore :return: set of explored GraphNodes """ explored = set() explored.add(node) dfs(node, callback=lambda n: explored.add(n)) return explored	[ "def", "explore", "(", "node", ")", ":", "explored", "=", "set", "(", ")", "explored", ".", "add", "(", "node", ")", "dfs", "(", "node", ",", "callback", "=", "lambda", "n", ":", "explored", ".", "add", "(", "n", ")", ")", "return", "explored" ]	32	11
def scale(self, center=True, scale=True): """ Center and/or scale the columns of the current frame. :param center: If True, then demean the data. If False, no shifting is done. If ``center`` is a list of numbers then shift each column by the corresponding amount. :param scal...	[ "def", "scale", "(", "self", ",", "center", "=", "True", ",", "scale", "=", "True", ")", ":", "return", "H2OFrame", ".", "_expr", "(", "expr", "=", "ExprNode", "(", "\"scale\"", ",", "self", ",", "center", ",", "scale", ")", ",", "cache", "=", "sel...	62.363636	34.909091
def check_api_response(self, response): """Check API response and raise exceptions if needed. :param requests.models.Response response: request response to check """ # check response if response.status_code == 200: return True elif response.status_code >= 400...	[ "def", "check_api_response", "(", "self", ",", "response", ")", ":", "# check response", "if", "response", ".", "status_code", "==", "200", ":", "return", "True", "elif", "response", ".", "status_code", ">=", "400", ":", "logging", ".", "error", "(", "\"{}: ...	34.944444	11.277778
def pass_time(self, t): """Non-blocking time-out for ``t`` seconds.""" cont = time.time() + t while time.time() < cont: time.sleep(0)	[ "def", "pass_time", "(", "self", ",", "t", ")", ":", "cont", "=", "time", ".", "time", "(", ")", "+", "t", "while", "time", ".", "time", "(", ")", "<", "cont", ":", "time", ".", "sleep", "(", "0", ")" ]	33	9.8
def generate_pages_by_file(): """Generates custom pages of 'file' storage type.""" from veripress import app from veripress.model import storage from veripress.model.parsers import get_standard_format_name from veripress.helpers import traverse_directory deploy_dir = get_deploy_dir() def c...	[ "def", "generate_pages_by_file", "(", ")", ":", "from", "veripress", "import", "app", "from", "veripress", ".", "model", "import", "storage", "from", "veripress", ".", "model", ".", "parsers", "import", "get_standard_format_name", "from", "veripress", ".", "helper...	46.702703	17.189189
def _patch_expand_paths(self, settings, name, value): """ Apply ``SettingsPostProcessor._patch_expand_path`` to each element in list. Args: settings (dict): Current settings. name (str): Setting name. value (list): List of paths to patch. Ret...	[ "def", "_patch_expand_paths", "(", "self", ",", "settings", ",", "name", ",", "value", ")", ":", "return", "[", "self", ".", "_patch_expand_path", "(", "settings", ",", "name", ",", "item", ")", "for", "item", "in", "value", "]" ]	29.8125	19.3125
def send_job_and_wait(self, message, body_params=None, timeout=None, raises=False): """.. versionchanged:: 0.8.4 Send a message as a job and wait for the response. .. note:: Not all messages are jobs, you'll have to find out which are which :param message: a message instanc...	[ "def", "send_job_and_wait", "(", "self", ",", "message", ",", "body_params", "=", "None", ",", "timeout", "=", "None", ",", "raises", "=", "False", ")", ":", "job_id", "=", "self", ".", "send_job", "(", "message", ",", "body_params", ")", "response", "="...	43.458333	18.666667
def correlation(df, cm=cm.PuOr_r, vmin=None, vmax=None, labels=None, show_scatter=False): """ Generate a column-wise correlation plot from the provided data. The columns of the supplied dataframes will be correlated (using `analysis.correlation`) to generate a Pearson correlation plot heatmap. Scatter ...	[ "def", "correlation", "(", "df", ",", "cm", "=", "cm", ".", "PuOr_r", ",", "vmin", "=", "None", ",", "vmax", "=", "None", ",", "labels", "=", "None", ",", "show_scatter", "=", "False", ")", ":", "data", "=", "analysis", ".", "correlation", "(", "df...	32.212766	24.87234

def camelcase_underscore(name): """ Convert camelcase names to underscore """ s1 = re.sub('(.)([A-Z][a-z]+)', r'\1_\2', name) return re.sub('([a-z0-9])([A-Z])', r'\1_\2', s1).lower()

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47.75

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def nextprefix(self): """ Get the next available prefix. This means a prefix starting with 'ns' with a number appended as (ns0, ns1, ..) that is not already defined on the wsdl document. """ used = [ns[0] for ns in self.prefixes] used += [ns[0] for ns in self.wsd...

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def main(unused_argv): """Run an agent.""" stopwatch.sw.enabled = FLAGS.profile or FLAGS.trace stopwatch.sw.trace = FLAGS.trace map_inst = maps.get(FLAGS.map) agent_classes = [] players = [] agent_module, agent_name = FLAGS.agent.rsplit(".", 1) agent_cls = getattr(importlib.import_module(agent_module...

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32.317073

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def train_local(self, closest_point, label_vector_description=None, N=None, pivot=True, **kwargs): """ Train the model in a Cannon-like fashion using the grid points as labels and the intensities as normalsied rest-frame fluxes within some local regime. """ lv = ...

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def phone_numbers(self): """ Access the phone_numbers :returns: twilio.rest.proxy.v1.service.phone_number.PhoneNumberList :rtype: twilio.rest.proxy.v1.service.phone_number.PhoneNumberList """ if self._phone_numbers is None: self._phone_numbers = PhoneNumberLi...

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def calculate_avg_score(res): """ private function Calculate the avg score of reviews present in res :param res: tuple of tuple returned from query_retrieve_comments_or_remarks :return: a float of the average score rounded to the closest 0.5 """ c_star_score = 6 avg_score = 0.0 nb_re...

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def as_property_description(self): """ Get the property description. Returns a dictionary describing the property. """ description = deepcopy(self.metadata) if 'links' not in description: description['links'] = [] description['links'].append( ...

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def geometry_point(lat, lon, elev): """ GeoJSON point. Latitude and Longitude only have one value each :param list lat: Latitude values :param list lon: Longitude values :param float elev: Elevation value :return dict: """ logger_excel.info("enter geometry_point") coordinates = [] ...

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def isdir(path, **kwargs): """Check if *path* is a directory""" import os.path return os.path.isdir(path, **kwargs)

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31

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def write(self, data): """Write string data to current process input stream.""" data = data.encode('utf-8') data_p = ctypes.create_string_buffer(data) num_bytes = PLARGE_INTEGER(LARGE_INTEGER(0)) bytes_to_write = len(data) success = WriteFile(self.conin_pipe, data_p, ...

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def export(): r''' Restores the trained variables into a simpler graph that will be exported for serving. ''' log_info('Exporting the model...') from tensorflow.python.framework.ops import Tensor, Operation inputs, outputs, _ = create_inference_graph(batch_size=FLAGS.export_batch_size, n_steps=...

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def configure(self, args): """Configure the set of plugins with the given args. After configuration, disabled plugins are removed from the plugins list. """ for plug in self._plugins: plug_name = self.plugin_name(plug) plug.enabled = getattr(args, "plugin_%s" % p...

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def list_permissions(self, group_name=None, resource=None): """List permission sets associated filtering by group and/or resource. Args: group_name (string): Name of group. resource (intern.resource.boss.Resource): Identifies which data model object to operate on. Retur...

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40

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def received(self, limit=None): """ Returns all the events that have been received (excluding sent events), until a limit if defined Args: limit (int, optional): the max length of the events to return (Default value = None) Returns: list: a list of received events ...

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35.75

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def _add_genes_to_bed(in_file, gene_file, fai_file, out_file, data, max_distance=10000): """Re-usable subcomponent that annotates BED file genes from another BED """ try: input_rec = next(iter(pybedtools.BedTool(in_file))) except StopIteration: # empty file utils.copy_plus(in_file, out_...

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def main(): """Main entry point""" # Quit when interrupted import signal signal.signal(signal.SIGINT, signal.SIG_DFL) # Arguments: # --separator STRING/REGEX - how to split a row into cells (only relevant for CSV parser) # --flatten - flatten item hashes. {'a':{'b':'c'}} --> {'a_b':'c'} ...

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def print(self, *args, **kwargs): ''' Utility function that behaves identically to 'print' except it only prints if verbose ''' if self._last_args and self._last_args.verbose: print(*args, **kwargs)

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def run_pod(self, pod, startup_timeout=120, get_logs=True): # type: (Pod, int, bool) -> Tuple[State, Optional[str]] """ Launches the pod synchronously and waits for completion. Args: pod (Pod): startup_timeout (int): Timeout for startup of the pod (if pod is pendi...

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def get(self, sid): """ Constructs a CredentialListContext :param sid: Fetch by unique credential list Sid :returns: twilio.rest.api.v2010.account.sip.credential_list.CredentialListContext :rtype: twilio.rest.api.v2010.account.sip.credential_list.CredentialListContext "...

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41.9

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def grant_db_access(conn, schema, table, role): r"""Gives access to database users/ groups Parameters ---------- conn : sqlalchemy connection object A valid connection to a database schema : str The database schema table : str The database table role : str da...

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27.8

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def get(self, collection_id, content=None, **kwargs): """Syntactic sugar around to make it easier to get fine-grained access to the parts of a file without composing a PhyloSchema object. Possible invocations include: w.get('pg_10') w.get('pg_10', 'trees') w.g...

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40.8

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def clone(self, forced_version_date=None, in_bulk=False): """ Clones a Versionable and returns a fresh copy of the original object. Original source: ClonableMixin snippet (http://djangosnippets.org/snippets/1271), with the pk/id change suggested in the comments :param fo...

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def _set_attribute(self, attribute, name, value): """Device attribute setter""" try: if attribute is None: attribute = self._attribute_file_open( name ) else: attribute.seek(0) if isinstance(value, str): value = value.e...

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def make_success_response(self, result): """ Makes the python dict corresponding to the JSON that needs to be sent for a successful response. Result is the actual payload that gets sent. """ response = self.make_response(constants.RESPONSE_STATUS_SUCCESS) response[constants.RESPONSE_KEY_...

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34.7

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def funcFindPrfMltpPrdXVal(idxPrc, aryFuncChnkTrn, aryFuncChnkTst, aryPrfMdlsTrnConv, aryPrfMdlsTstConv, aryMdls, queOut): """ Function for finding be...

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36.24026

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def standard(target, mol_weight='pore.molecular_weight', density='pore.density'): r""" Calculates the molar density from the molecular weight and mass density Parameters ---------- target : OpenPNM Object The object for which these values are being calculated. This con...

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def autocorrelation(x, lag): """ Calculates the autocorrelation of the specified lag, according to the formula [1] .. math:: \\frac{1}{(n-l)\sigma^{2}} \\sum_{t=1}^{n-l}(X_{t}-\\mu )(X_{t+l}-\\mu) where :math:`n` is the length of the time series :math:`X_i`, :math:`\sigma^2` its variance and ...

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def run_decider_state(self, decider_state, child_errors, final_outcomes_dict): """ Runs the decider state of the barrier concurrency state. The decider state decides on which outcome the barrier concurrency is left. :param decider_state: the decider state of the barrier concurrency state ...

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def build_ml_phyml(alignment, outfile, work_dir=".", **kwargs): """ build maximum likelihood tree of DNA seqs with PhyML """ phy_file = op.join(work_dir, "work", "aln.phy") AlignIO.write(alignment, file(phy_file, "w"), "phylip-relaxed") phyml_cl = PhymlCommandline(cmd=PHYML_BIN("phyml"), input=...

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35.5

19.8

def search_engine(query, top=5, service="google", license=None, cache=os.path.join(DEFAULT_CACHE, "google")): """ Return a color aggregate from colors and ranges parsed from the web. T. De Smedt, http://nodebox.net/code/index.php/Prism """ # Check if we have cached information firs...

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30.188679

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def getPaths(roots, ignores=None): """ Recursively walk a set of paths and return a listing of contained files. :param roots: Relative or absolute paths to files or folders. :type roots: :class:`~__builtins__.list` of :class:`~__builtins__.str` :param ignores: A list of :py:mod:`fnmatch` globs to ...

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36.037037

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def errorReceived(self, merr): """ Called when an error message is received """ d, timeout = self._pendingCalls.get(merr.reply_serial, (None, None)) if timeout: timeout.cancel() if d: del self._pendingCalls[merr.reply_serial] e = error....

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34.176471

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def get_runnable_effects(self) -> List[Effect]: """ Returns all runnable effects in the project. :return: List of all runnable effects """ return [effect for name, effect in self._effects.items() if effect.runnable]

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36.571429

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def _GetUtf8Contents(self, file_name): """Check for errors in file_name and return a string for csv reader.""" contents = self._FileContents(file_name) if not contents: # Missing file return # Check for errors that will prevent csv.reader from working if len(contents) >= 2 and contents[0:2] ...

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42.071429

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def patch_namespaced_resource_quota(self, name, namespace, body, **kwargs): # noqa: E501 """patch_namespaced_resource_quota # noqa: E501 partially update the specified ResourceQuota # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP req...

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62.32

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def env(self): """ Dict of all environment variables that will be run with this command. """ env_vars = os.environ.copy() env_vars.update(self._env) new_path = ":".join( self._paths + [env_vars["PATH"]] if "PATH" in env_vars else [] + self._paths ) ...

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34

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def derivatives(self, x, y, Rs, theta_Rs, e1, e2, center_x=0, center_y=0): """ returns df/dx and df/dy of the function (integral of NFW) """ phi_G, q = param_util.ellipticity2phi_q(e1, e2) x_shift = x - center_x y_shift = y - center_y cos_phi = np.cos(phi_G) ...

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41.545455

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def UpsertUserDefinedFunction(self, collection_link, udf, options=None): """Upserts a user defined function in a collection. :param str collection_link: The link to the collection. :param str udf: :param dict options: The request options for the request. ...

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29.52

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def search(self, **kwargs): """ Query using ElasticSearch, returning an elasticsearch queryset. :param kwargs: keyword arguments (optional) * query : ES Query spec * tags : content tags * types : content types * feature_types : featured types * publi...

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40.62

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def convert_sum(node, **kwargs): """Map MXNet's sum operator attributes to onnx's ReduceSum operator and return the created node. """ name, input_nodes, attrs = get_inputs(node, kwargs) mx_axis = attrs.get("axis", None) axes = convert_string_to_list(str(mx_axis)) if mx_axis is not None else Non...

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27.344828

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def first(self): """ Return the first element. """ if self.mode == 'local': return self.values[0] if self.mode == 'spark': return self.values.first().toarray()

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24

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def update(self, symbol, data, metadata=None, upsert=True, as_of=None, **kwargs): """ Append 'data' under the specified 'symbol' name to this library. Parameters ---------- symbol : `str` symbol name for the item data : `pd.DataFrame` to be persisted ...

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41.483871

19

def close(self): """Set some objects to None to hopefully free up some memory.""" self._target_context_errors = None self._query_context_errors = None self._general_errors = None for ae in self._alignment_errors: ae.close() self._alignment_errors = None

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34.5

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def build(self, root, schema): """ Build the syntax tree for kubectl command line """ if schema.get("subcommands") and schema["subcommands"]: for subcmd, childSchema in schema["subcommands"].items(): child = CommandTree(node=subcmd) child = self.build(child, c...

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49

12.058824

def web_agent(self, reactor, socks_endpoint, pool=None): """ :param socks_endpoint: create one with :meth:`txtorcon.TorConfig.create_socks_endpoint`. Can be a Deferred. :param pool: passed on to the Agent (as ``pool=``) """ # local import because there is...

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34.944444

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def insert_weave_option_group(parser): """ Adds the options used to specify weave options. Parameters ---------- parser : object OptionParser instance """ optimization_group = parser.add_argument_group("Options for controlling " "weave") optim...

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40.72973

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def conjugate(self): """Quaternion conjugate, encapsulated in a new instance. For a unit quaternion, this is the same as the inverse. Returns: A new Quaternion object clone with its vector part negated """ return self.__class__(scalar=self.scalar, vector= -self.vect...

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35

23.111111

def parse_dimension(self, node): """ Parses <Dimension> @param node: Node containing the <Dimension> element @type node: xml.etree.Element @raise ParseError: When the name is not a string or if the dimension is not a signed integer. """ try: ...

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28.73913

20.73913

def export_tour(tour_steps, name=None, filename="my_tour.js", url=None): """ Exports a tour as a JS file. It will include necessary resources as well, such as jQuery. You'll be able to copy the tour directly into the Console of any web browser to play the tour outside of SeleniumBase runs. "...

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41.242775

15.306358

def _save_potentials(self, directory): """save potentials to a directory """ print('saving potentials') digits = int(np.ceil(np.log10(self.configs.configs.shape[0]))) for i in range(0, self.configs.configs.shape[0]): pot_data = self.get_potential(i) filena...

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40.5

12.944444

def _try_weakref(arg, remove_callback): """Return a weak reference to arg if possible, or arg itself if not.""" try: arg = weakref.ref(arg, remove_callback) except TypeError: # Not all types can have a weakref. That includes strings # and floats and such, so just pass them through di...

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38.555556

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def Input_setIgnoreInputEvents(self, ignore): """ Function path: Input.setIgnoreInputEvents Domain: Input Method name: setIgnoreInputEvents Parameters: Required arguments: 'ignore' (type: boolean) -> Ignores input events processing when set to true. No return value. Description: Ignore...

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31.684211

20.526316

def usnjrnl_timeline(self): """Iterates over the changes occurred within the filesystem. Yields UsnJrnlEvent namedtuples containing: file_reference_number: known in Unix FS as inode. path: full path of the file. size: size of the file in bytes if recoverable. ...

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36.56

20.2

def register(self, job): """Takes a job (unencoded) and adorns it with a unique key; this makes an entry in the database without any further specification.""" with self.lock: self.cur.execute( 'insert into "jobs" ("name", "session", "status") ' 'values...

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52.777778

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def reject(self, *, requeue=True): """ Reject the message. :keyword bool requeue: if true, the broker will attempt to requeue the message and deliver it to an alternate consumer. """ self.sender.send_BasicReject(self.delivery_tag, requeue)

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35.625

17.625

def _iter_frequencies(q, frange, mismatch, dur): """Iterate over the frequencies of this 'QPlane' Parameters ---------- q: q value frange: 'list' upper and lower bounds of frequency range mismatch: percentage of desired fractional mismatch dur: duration of ti...

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28.064516

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def subplot(self, index_x, index_y): """ Sets the active subplot. Parameters ---------- index_x : int Index of the subplot to activate in the x direction. index_y : int Index of the subplot to activate in the y direction. """ sel...

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26.5

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def create_tmp_rootdir(self): """ create a rootdir that we can destroy later again Returns ------- """ if self.rootdir: tmp_rootdir = tempfile.mkdtemp(prefix='bcolz-') self._dir_clean_list.append(tmp_rootdir) else: tmp_rootdir...

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24.357143

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def preserve_channel_dim(func): """Preserve dummy channel dim.""" @wraps(func) def wrapped_function(img, *args, **kwargs): shape = img.shape result = func(img, *args, **kwargs) if len(shape) == 3 and shape[-1] == 1 and len(result.shape) == 2: result = np.expand_dims(resul...

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33.818182

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def _pack3(obj, fp, **options): """ Serialize a Python object into MessagePack bytes. Args: obj: a Python object fp: a .write()-supporting file-like object Kwargs: ext_handlers (dict): dictionary of Ext handlers, mapping a custom type to a callable ...

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34.628571

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def session_exists(self, username): """ :param username: :type username: str :return: :rtype: """ logger.debug("session_exists(%s)?" % username) return self._store.containsSession(username, 1)

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27.555556

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async def query( self, q: AnyStr, *, epoch: str = 'ns', chunked: bool = False, chunk_size: Optional[int] = None, db: Optional[str] = None, use_cache: bool = False, ) -> Union[AsyncGenerator[ResultType, None], ResultType]: """Sends a query to In...

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44.22619

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def write_metadata(self, handler): """ set the meta data """ if self.metadata is not None: handler.write_metadata(self.cname, self.metadata)

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41.25

7.5

def assign_default_log_values(self, fpath, line, formatter): ''' >>> lc = LogCollector('file=/path/to/log_file.log:formatter=logagg.formatters.basescript', 30) >>> from pprint import pprint >>> formatter = 'logagg.formatters.mongodb' >>> fpath = '/var/log/mongodb/mongodb.log' ...

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31.526316

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def find_unused_port(start_port, end_port, host="127.0.0.1", socket_type="TCP", ignore_ports=None): """ Finds an unused port in a range. :param start_port: first port in the range :param end_port: last port in the range :param host: host/address for bind() :param socket_...

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46.657143

27.4

def estimate_augmented_markov_model(dtrajs, ftrajs, lag, m, sigmas, count_mode='sliding', connectivity='largest', dt_traj='1 step', maxiter=1000000, eps=0.05, maxcache=3000): r""" Estimates an Augmented Markov model from discrete trajectories and experimental dat...

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42.453947

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def run(self): """ Append version number to lsqfit/__init__.py """ with open('src/lsqfit/__init__.py', 'a') as lsfile: lsfile.write("\n__version__ = '%s'\n" % LSQFIT_VERSION) _build_py.run(self)

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45.2

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def _get_build_type(fnames, samples, caller): """Confirm we should build a gemini database: need gemini in tools_on. Checks for valid conditions for running a database and gemini or gemini_orig configured in tools on. """ build_type = set() if any(vcfutils.vcf_has_variants(f) for f in fnames) a...

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52.47619

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def apply(self): """Apply the rules of the context to its occurrences. This method executes all the functions defined in self.tasks in the order they are listed. Every function that acts as a context task receives the Context object itself as its only argument. The con...

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33.555556

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def _add_dot_key(self, section, key=None): """ :param str section: Config section :param str key: Config key """ if key: self._dot_keys[self._to_dot_key(section, key)] = (section, key) else: self._dot_keys[self._to_dot_key(section)] = section

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34

13.333333

def triangle_areas(p1,p2,p3): """Compute an array of triangle areas given three arrays of triangle pts p1,p2,p3 - three Nx2 arrays of points """ v1 = (p2 - p1).astype(np.float) v2 = (p3 - p1).astype(np.float) # Original: # cross1 = v1[:,1] * v2[:,0] # cross2 = v2[:,1] * v1[:,0] ...

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25.481481

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def get_all_groups(path_prefix='/', region=None, key=None, keyid=None, profile=None): ''' Get and return all IAM group details, starting at the optional path. .. versionadded:: 2016.3.0 CLI Example: salt-call boto_iam.get_all_groups ''' conn = _get_conn(region=region,...

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34.807692

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def fire_event(self, event_name, wait=False, *args, **kwargs): """ Fire an event to plugins. PluginManager schedule @asyncio.coroutinecalls for each plugin on method called "on_" + event_name For example, on_connect will be called on event 'connect' Method calls are schedule in t...

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42.27027

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def from_definition(self, table: Table, version: int): """Add all columns from the table added in the specified version""" self.table(table) self.add_columns(*table.columns.get_with_version(version)) return self

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def restbase(self, endpoint, title): """ Returns RESTBase query string """ if not endpoint: raise ValueError("invalid endpoint: %s" % endpoint) route = endpoint if title and endpoint != '/page/': route = endpoint + safequote_restbase(title) ...

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def validate_event(payload: bytes, *, signature: str, secret: str) -> None: """Validate the signature of a webhook event.""" # https://developer.github.com/webhooks/securing/#validating-payloads-from-github signature_prefix = "sha1=" if not signature.startswith(signature_prefix): raise Validatio...

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def format_title(self, format='html5', deparagraph=True, mathjax=False, smart=True, extra_args=None): """Get the document title in the specified markup format. Parameters ---------- format : `str`, optional Output format (such as ``'html5'`` or ``'plain'...

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def is_training_name(name): """ **Guess** if this variable is only used in training. Only used internally to avoid too many logging. Do not use it. """ # TODO: maybe simply check against TRAINABLE_VARIABLES and MODEL_VARIABLES? # TODO or use get_slot_names() name = get_op_tensor_name(name)[0...

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def sync_required(func): """Decorate methods when synchronizing repository is required.""" @wraps(func) def wrapper(self, *args, **kwargs): if not self._keepSynchronized: r = func(self, *args, **kwargs) else: state = self._load_state() #print("----------->...

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def nodes_with_tag(tag): """Sets a list of nodes that have the given tag assigned and calls node()""" nodes = lib.get_nodes_with_tag(tag, env.chef_environment, littlechef.include_guests) nodes = [n['name'] for n in nodes] if not len(nodes): print("No nodes foun...

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def distribute_libs(self, arch, src_dirs, wildcard='*', dest_dir="libs"): '''Copy existing arch libs from build dirs to current dist dir.''' info('Copying libs') tgt_dir = join(dest_dir, arch.arch) ensure_dir(tgt_dir) for src_dir in src_dirs: for lib in glob.glob(join...

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def alias(name, class_object): """ Create an alias of a class object The objective of this method is to have an alias that is Registered. i.e If we have class_b = class_a Makes `class_b` an alias of `class_a`, but if `class_a` is registered by its metaclass, `class_b` is not. The ...

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def part_channel(self, channel, reason=None, tags=None): """Part the given channel.""" params = [channel] if reason: params.append(reason) self.send('PART', params=params, tags=tags)

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def envars_to_markdown(envars, title = "Environment"): '''generate a markdown list of a list of environment variable tuples Parameters ========== title: A title for the section (defaults to "Environment" envars: a list of tuples for the environment, e.g.: [('TERM', 'xterm-2...

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def _validate_json_for_regular_workflow(json_spec, args): """ Validates fields used only for building a regular, project-based workflow. """ validated = {} override_project_id, override_folder, override_workflow_name = \ dxpy.executable_builder.get_parsed_destination(args.destination) va...

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def inheritdoc(parent): """Inherit documentation from a parent Parameters ---------- parent : callable The parent function or class that contains the sought-after docstring. If it doesn't have a docstring, this might behave in unexpected ways. Examples -------- ...

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def iam_configuration(self): """Retrieve IAM configuration for this bucket. :rtype: :class:`IAMConfiguration` :returns: an instance for managing the bucket's IAM configuration. """ info = self._properties.get("iamConfiguration", {}) return IAMConfiguration.from_api_repr(...

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def _ParseEntry(self, key, val): """Adds an entry for a configuration setting. Args: key: The name of the setting. val: The value of the setting. """ if key in self._repeated: setting = self.section.setdefault(key, []) setting.extend(val) else: self.section.setdefault(...

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def _readFile(self, sldir, fileName, sep): ''' Private method that reads in the header and column data. ''' if sldir.endswith(os.sep): fileName = str(sldir)+str(fileName) else: fileName = str(sldir)+os.sep+str(fileName) fileLines=[] #list of li...

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def proxy_protocol(self, error='raise', default=None, limit=None, authenticate=False): """ Parses, and optionally authenticates, proxy protocol information from request. Note that ``self.request`` is wrapped by ``SocketBuffer``. :param error: How read (``exc.ReadError``) and...

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def receive(self, event_type, signature, data_str): """Receive a web hook for the event and signature. Args: event_type (str): Name of the event that was received (from the request ``X-HelpScout-Event`` header). signature (str): The signature that was received, w...

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def explore(node): """ Given a node, explores on relatives, siblings and children :param node: GraphNode from which to explore :return: set of explored GraphNodes """ explored = set() explored.add(node) dfs(node, callback=lambda n: explored.add(n)) return explored

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def scale(self, center=True, scale=True): """ Center and/or scale the columns of the current frame. :param center: If True, then demean the data. If False, no shifting is done. If ``center`` is a list of numbers then shift each column by the corresponding amount. :param scal...

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def check_api_response(self, response): """Check API response and raise exceptions if needed. :param requests.models.Response response: request response to check """ # check response if response.status_code == 200: return True elif response.status_code >= 400...

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def pass_time(self, t): """Non-blocking time-out for ``t`` seconds.""" cont = time.time() + t while time.time() < cont: time.sleep(0)

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def generate_pages_by_file(): """Generates custom pages of 'file' storage type.""" from veripress import app from veripress.model import storage from veripress.model.parsers import get_standard_format_name from veripress.helpers import traverse_directory deploy_dir = get_deploy_dir() def c...

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def _patch_expand_paths(self, settings, name, value): """ Apply ``SettingsPostProcessor._patch_expand_path`` to each element in list. Args: settings (dict): Current settings. name (str): Setting name. value (list): List of paths to patch. Ret...

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def send_job_and_wait(self, message, body_params=None, timeout=None, raises=False): """.. versionchanged:: 0.8.4 Send a message as a job and wait for the response. .. note:: Not all messages are jobs, you'll have to find out which are which :param message: a message instanc...

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def correlation(df, cm=cm.PuOr_r, vmin=None, vmax=None, labels=None, show_scatter=False): """ Generate a column-wise correlation plot from the provided data. The columns of the supplied dataframes will be correlated (using `analysis.correlation`) to generate a Pearson correlation plot heatmap. Scatter ...

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