kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def filter(self, value=None, model=None, context=None): """ Sequentially applies all the filters to provided value :param value: a value to filter :param model: parent entity :param context: filtering context, usually parent entity :return: filtered value """ ...	[ "def", "filter", "(", "self", ",", "value", "=", "None", ",", "model", "=", "None", ",", "context", "=", "None", ")", ":", "if", "value", "is", "None", ":", "return", "value", "for", "filter_obj", "in", "self", ".", "filters", ":", "value", "=", "f...	32.444444	13.444444
def search_for_devices_by_serial_number(self, sn): """ Returns a list of device objects that match the serial number in param 'sn'. This will match partial serial numbers. """ import re sn_search = re.compile(sn) matches = [] for dev...	[ "def", "search_for_devices_by_serial_number", "(", "self", ",", "sn", ")", ":", "import", "re", "sn_search", "=", "re", ".", "compile", "(", "sn", ")", "matches", "=", "[", "]", "for", "dev_o", "in", "self", ".", "get_all_devices_in_portal", "(", ")", ":",...	32.608696	18.521739
def GetMTime(path): ''' :param unicode path: Path to file or directory :rtype: float :returns: Modification time for path. If this is a directory, the highest mtime from files inside it will be returned. @note: In some Linux distros (such as CentOs, or anything wit...	[ "def", "GetMTime", "(", "path", ")", ":", "_AssertIsLocal", "(", "path", ")", "if", "os", ".", "path", ".", "isdir", "(", "path", ")", ":", "files", "=", "FindFiles", "(", "path", ")", "if", "len", "(", "files", ")", ">", "0", ":", "return", "max...	26.692308	27.769231
def create_edges(self): """Set up edge-node and edge-cell relations. """ # Reshape into individual edges. # Sort the columns to make it possible for `unique()` to identify # individual edges. s = self.idx_hierarchy.shape a = numpy.sort(self.idx_hierarchy.reshape(s...	[ "def", "create_edges", "(", "self", ")", ":", "# Reshape into individual edges.", "# Sort the columns to make it possible for `unique()` to identify", "# individual edges.", "s", "=", "self", ".", "idx_hierarchy", ".", "shape", "a", "=", "numpy", ".", "sort", "(", "self",...	31.666667	19.575758
def callprop(self, prop, *args): '''Call a property prop as a method (this will be self). NOTE: dont pass this and arguments here, these will be added automatically!''' if not isinstance(prop, basestring): prop = prop.to_string().value cand = self.get(prop) i...	[ "def", "callprop", "(", "self", ",", "prop", ",", "*", "args", ")", ":", "if", "not", "isinstance", "(", "prop", ",", "basestring", ")", ":", "prop", "=", "prop", ".", "to_string", "(", ")", ".", "value", "cand", "=", "self", ".", "get", "(", "pr...	40	14
def shift_up_left(self, times=1): """ Finds Location shifted up left by 1 :rtype: Location """ try: return Location(self._rank + times, self._file - times) except IndexError as e: raise IndexError(e)	[ "def", "shift_up_left", "(", "self", ",", "times", "=", "1", ")", ":", "try", ":", "return", "Location", "(", "self", ".", "_rank", "+", "times", ",", "self", ".", "_file", "-", "times", ")", "except", "IndexError", "as", "e", ":", "raise", "IndexErr...	26.3	13.9
def check_vprint(s, vprinter): '''checked verbose printing''' if vprinter is True: print(s); elif callable(vprinter): vprinter(s);	[ "def", "check_vprint", "(", "s", ",", "vprinter", ")", ":", "if", "vprinter", "is", "True", ":", "print", "(", "s", ")", "elif", "callable", "(", "vprinter", ")", ":", "vprinter", "(", "s", ")" ]	25.5	14.5
def serialize(self): """ Convert the data to one that can be saved in h5 structures Returns: pandas.DataFrame: like a cell data frame but serialized. columns """ df = self.copy() df['scored_calls'] = df['scored_calls'].apply(lambda x: json.dumps(x)) d...	[ "def", "serialize", "(", "self", ")", ":", "df", "=", "self", ".", "copy", "(", ")", "df", "[", "'scored_calls'", "]", "=", "df", "[", "'scored_calls'", "]", ".", "apply", "(", "lambda", "x", ":", "json", ".", "dumps", "(", "x", ")", ")", "df", ...	46.733333	27
def parse_object_type_extension(lexer: Lexer) -> ObjectTypeExtensionNode: """ObjectTypeExtension""" start = lexer.token expect_keyword(lexer, "extend") expect_keyword(lexer, "type") name = parse_name(lexer) interfaces = parse_implements_interfaces(lexer) directives = parse_directives(lexer, ...	[ "def", "parse_object_type_extension", "(", "lexer", ":", "Lexer", ")", "->", "ObjectTypeExtensionNode", ":", "start", "=", "lexer", ".", "token", "expect_keyword", "(", "lexer", ",", "\"extend\"", ")", "expect_keyword", "(", "lexer", ",", "\"type\"", ")", "name"...	33.888889	12.277778
def handle_presence(self, old_present): ''' Fire presence events if enabled ''' # On the first run it may need more time for the EventPublisher # to come up and be ready. Set the timeout to account for this. if self.presence_events and self.event.connect_pull(timeout=3): ...	[ "def", "handle_presence", "(", "self", ",", "old_present", ")", ":", "# On the first run it may need more time for the EventPublisher", "# to come up and be ready. Set the timeout to account for this.", "if", "self", ".", "presence_events", "and", "self", ".", "event", ".", "co...	46.368421	15.105263
def early_warning(iterable, name='this generator'): ''' This function logs an early warning that the generator is empty. This is handy for times when you're manually playing with generators and would appreciate the console warning you ahead of time that your generator is now empty, instead of being sur...	[ "def", "early_warning", "(", "iterable", ",", "name", "=", "'this generator'", ")", ":", "nxt", "=", "None", "prev", "=", "next", "(", "iterable", ")", "while", "1", ":", "try", ":", "nxt", "=", "next", "(", "iterable", ")", "except", ":", "warning", ...	33.55	24.95
def dataframe(self): """ Returns a ``pandas DataFrame`` containing all other relevant class properties and values for the specified game. """ fields_to_include = { 'assist_percentage': self.assist_percentage, 'assists': self.assists, 'block_per...	[ "def", "dataframe", "(", "self", ")", ":", "fields_to_include", "=", "{", "'assist_percentage'", ":", "self", ".", "assist_percentage", ",", "'assists'", ":", "self", ".", "assists", ",", "'block_percentage'", ":", "self", ".", "block_percentage", ",", "'blocks'...	51.478261	16.391304
def value_for_keypath(obj, path): """Get value from walking key path with start object obj. """ val = obj for part in path.split('.'): match = re.match(list_index_re, part) if match is not None: val = _extract(val, match.group(1)) if not isinstance(val, list) and ...	[ "def", "value_for_keypath", "(", "obj", ",", "path", ")", ":", "val", "=", "obj", "for", "part", "in", "path", ".", "split", "(", "'.'", ")", ":", "match", "=", "re", ".", "match", "(", "list_index_re", ",", "part", ")", "if", "match", "is", "not",...	33.529412	12.588235
def rigid_linear_interpolate(x_axis, y_axis, x_new_axis): """Interpolate a y = f(x) function using linear interpolation. Rigid means the x_new_axis has to be in x_axis's range. """ f = interp1d(x_axis, y_axis) return f(x_new_axis)	[ "def", "rigid_linear_interpolate", "(", "x_axis", ",", "y_axis", ",", "x_new_axis", ")", ":", "f", "=", "interp1d", "(", "x_axis", ",", "y_axis", ")", "return", "f", "(", "x_new_axis", ")" ]	35	14.285714
def get_plugin_meta(plugins): """ Returns meta data about plugins. :param plugins: A list of plugins. :type plugins: list :returns: A list of dicts containing plugin meta data. :rtype: list """ return [ { "name": p.name, "version": p.version, ...	[ "def", "get_plugin_meta", "(", "plugins", ")", ":", "return", "[", "{", "\"name\"", ":", "p", ".", "name", ",", "\"version\"", ":", "p", ".", "version", ",", "\"homepage\"", ":", "p", ".", "homepage", ",", "\"enabled\"", ":", "p", ".", "enabled", ",", ...	22.315789	16.105263
def CompleteBreakpoint(self, breakpoint_id): """Marks the specified breaking as completed. Appends the ID to set of completed breakpoints and clears it. Args: breakpoint_id: breakpoint ID to complete. """ with self._lock: self._completed.add(breakpoint_id) if breakpoint_id in sel...	[ "def", "CompleteBreakpoint", "(", "self", ",", "breakpoint_id", ")", ":", "with", "self", ".", "_lock", ":", "self", ".", "_completed", ".", "add", "(", "breakpoint_id", ")", "if", "breakpoint_id", "in", "self", ".", "_active", ":", "self", ".", "_active",...	30.583333	14.583333
def facet_raw(self, **kw): """ Return a new S instance with raw facet args combined with existing set. """ items = kw.items() if six.PY3: items = list(items) return self._clone(next_step=('facet_raw', items))	[ "def", "facet_raw", "(", "self", ",", "", "", "kw", ")", ":", "items", "=", "kw", ".", "items", "(", ")", "if", "six", ".", "PY3", ":", "items", "=", "list", "(", "items", ")", "return", "self", ".", "_clone", "(", "next_step", "=", "(", "'fa...	29.777778	13.333333
def radio_buttons_clicked(self): """Handler when selected radio button changed.""" # Disable all spin boxes for spin_box in list(self.spin_boxes.values()): spin_box.setEnabled(False) # Disable list widget self.list_widget.setEnabled(False) # Get selected radi...	[ "def", "radio_buttons_clicked", "(", "self", ")", ":", "# Disable all spin boxes", "for", "spin_box", "in", "list", "(", "self", ".", "spin_boxes", ".", "values", "(", ")", ")", ":", "spin_box", ".", "setEnabled", "(", "False", ")", "# Disable list widget", "s...	43.809524	14.238095
def get_interface_switch(self, nexus_host, intf_type, interface): """Get the interface data from host. :param nexus_host: IP address of Nexus switch :param intf_type: String which specifies interface type. example: ethernet :param...	[ "def", "get_interface_switch", "(", "self", ",", "nexus_host", ",", "intf_type", ",", "interface", ")", ":", "if", "intf_type", "==", "\"ethernet\"", ":", "path_interface", "=", "\"phys-[eth\"", "+", "interface", "+", "\"]\"", "else", ":", "path_interface", "=",...	39.038462	17.538462
def expand_relative_uri(self, context, uri): """If uri is relative then expand in context. Prints warning if expansion happens. """ full_uri = urljoin(context, uri) if (full_uri != uri): print(" WARNING - expanded relative URI to %s" % (full_uri)) uri = ...	[ "def", "expand_relative_uri", "(", "self", ",", "context", ",", "uri", ")", ":", "full_uri", "=", "urljoin", "(", "context", ",", "uri", ")", "if", "(", "full_uri", "!=", "uri", ")", ":", "print", "(", "\" WARNING - expanded relative URI to %s\"", "%", "(",...	33.9	12.7
def complain(self, id, is_spam): """ http://api.yandex.ru/cleanweb/doc/dg/concepts/complain.xml""" r = self.request('post', 'http://cleanweb-api.yandex.ru/1.0/complain', data={'id': id, 'spamtype': 'spam' if is_spam else 'ham'}) return True	[ "def", "complain", "(", "self", ",", "id", ",", "is_spam", ")", ":", "r", "=", "self", ".", "request", "(", "'post'", ",", "'http://cleanweb-api.yandex.ru/1.0/complain'", ",", "data", "=", "{", "'id'", ":", "id", ",", "'spamtype'", ":", "'spam'", "if", "...	57	22
def list_backends(): """Return installed backends. Backends are installed python packages named pyvisa-<something> where <something> is the name of the backend. :rtype: list """ return ['ni'] + [name for (loader, name, ispkg) in pkgutil.iter_modules() if name.startswith('p...	[ "def", "list_backends", "(", ")", ":", "return", "[", "'ni'", "]", "+", "[", "name", "for", "(", "loader", ",", "name", ",", "ispkg", ")", "in", "pkgutil", ".", "iter_modules", "(", ")", "if", "name", ".", "startswith", "(", "'pyvisa-'", ")", "and", ...	35.3	25.9
def searchQueryAll(self, args, *kwargs): """ Experimental Method Execute a Search query, retrieving all rows. This method returns a :class:`Deferred` object which is executed with a :class:`~.SearchRequest` object. The object may be iterated over to yield the rows in ...	[ "def", "searchQueryAll", "(", "self", ",", "", "args", ",", "", "", "kwargs", ")", ":", "if", "not", "self", ".", "connected", ":", "cb", "=", "lambda", "x", ":", "self", ".", "searchQueryAll", "(", "", "args", ",", "", "", "kwargs", ")", "...	29.828571	21.6
def get_extr_license_ident(self, extr_lic): """ Return an a license identifier from an ExtractedLicense or None. """ identifier_tripples = list(self.graph.triples((extr_lic, self.spdx_namespace['licenseId'], None))) if not identifier_tripples: self.error = True ...	[ "def", "get_extr_license_ident", "(", "self", ",", "extr_lic", ")", ":", "identifier_tripples", "=", "list", "(", "self", ".", "graph", ".", "triples", "(", "(", "extr_lic", ",", "self", ".", "spdx_namespace", "[", "'licenseId'", "]", ",", "None", ")", ")"...	35.894737	20.315789
def function( name, tgt, ssh=False, tgt_type='glob', ret='', ret_config=None, ret_kwargs=None, expect_minions=False, fail_minions=None, fail_function=None, arg=None, kwarg=None, timeout=None, batch=None, ...	[ "def", "function", "(", "name", ",", "tgt", ",", "ssh", "=", "False", ",", "tgt_type", "=", "'glob'", ",", "ret", "=", "''", ",", "ret_config", "=", "None", ",", "ret_kwargs", "=", "None", ",", "expect_minions", "=", "False", ",", "fail_minions", "=", ...	29.346369	22.75419
def deprecated(reason, replacement, gone_in, issue=None): # type: (str, Optional[str], Optional[str], Optional[int]) -> None """Helper to deprecate existing functionality. reason: Textual reason shown to the user about why this functionality has been deprecated. replacement: Tex...	[ "def", "deprecated", "(", "reason", ",", "replacement", ",", "gone_in", ",", "issue", "=", "None", ")", ":", "# type: (str, Optional[str], Optional[str], Optional[int]) -> None", "# Construct a nice message.", "# This is purposely eagerly formatted as we want it to appear as if someo...	42.166667	23.75
def _divf16(ins): """ Divides 2 32bit (16.16) fixed point numbers. The result is pushed onto the stack. Optimizations: * If 2nd operand is 1, do nothing * If 2nd operand is -1, do NEG32 """ op1, op2 = tuple(ins.quad[2:]) if is_float(op2): if float(op2) == 1: ...	[ "def", "_divf16", "(", "ins", ")", ":", "op1", ",", "op2", "=", "tuple", "(", "ins", ".", "quad", "[", "2", ":", "]", ")", "if", "is_float", "(", "op2", ")", ":", "if", "float", "(", "op2", ")", "==", "1", ":", "output", "=", "_f16_oper", "("...	26.25	16.607143
def _read_register(self, reg): """Read 16 bit register value.""" self.buf[0] = reg with self.i2c_device as i2c: i2c.write(self.buf, end=1, stop=False) i2c.readinto(self.buf, end=2) return self.buf[0] << 8 \| self.buf[1]	[ "def", "_read_register", "(", "self", ",", "reg", ")", ":", "self", ".", "buf", "[", "0", "]", "=", "reg", "with", "self", ".", "i2c_device", "as", "i2c", ":", "i2c", ".", "write", "(", "self", ".", "buf", ",", "end", "=", "1", ",", "stop", "="...	38.285714	6.428571
def get_data_statistics(interpreted_files): '''Quick and dirty function to give as redmine compatible iverview table ''' print '\| File Name \| File Size \| Times Stamp \| Events \| Bad Events \| Measurement time \| # SR \| Hits \|' # Mean Tot \| Mean rel. BCID' for interpreted_file in interprete...	[ "def", "get_data_statistics", "(", "interpreted_files", ")", ":", "print", "'\| File Name \| File Size \| Times Stamp \| Events \| Bad Events \| Measurement time \| # SR \| Hits \|'", "# Mean Tot \| Mean rel. BCID'", "for", "interpreted_file", "in", "interpreted_files", ":", "with"...	87.722222	56.833333
def GetClientsForHashes(cls, hashes, token=None, age=aff4.NEWEST_TIME): """Yields (hash, client_files) pairs for all the specified hashes. Args: hashes: List of RDFURN's. token: Security token. age: AFF4 age specification. Only get hits corresponding to the given age spec. Should be a...	[ "def", "GetClientsForHashes", "(", "cls", ",", "hashes", ",", "token", "=", "None", ",", "age", "=", "aff4", ".", "NEWEST_TIME", ")", ":", "if", "age", "==", "aff4", ".", "ALL_TIMES", ":", "raise", "ValueError", "(", "\"age==aff4.ALL_TIMES is not supported.\""...	43	22.735294
def _process_tasks(self, task_queue, rmgr, logger, mq_hostname, port, local_prof, sid): ''' Purpose: The new thread that gets spawned by the main tmgr process invokes this function. This function receives tasks from 'task_queue' and submits them to the RADICAL Pilot RTS. ''' ...	[ "def", "_process_tasks", "(", "self", ",", "task_queue", ",", "rmgr", ",", "logger", ",", "mq_hostname", ",", "port", ",", "local_prof", ",", "sid", ")", ":", "placeholder_dict", "=", "dict", "(", ")", "def", "load_placeholder", "(", "task", ",", "rts_uid"...	39.347222	26.625
def memory_pour(buffer_, args, kwargs): """Yield data from entries.""" def opener(archive_res): _LOGGER.debug("Opening from (%d) bytes (memory_pour).", len(buffer_)) _archive_read_open_memory(archive_res, buffer_) return _pour(opener, args, flags=0, **kwargs)	[ "def", "memory_pour", "(", "buffer_", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "def", "opener", "(", "archive_res", ")", ":", "_LOGGER", ".", "debug", "(", "\"Opening from (%d) bytes (memory_pour).\"", ",", "len", "(", "buffer_", ")", ")", "_ar...	35.75	19.5
def create_jar(jar_file, entries): """ Create JAR from given entries. :param jar_file: filename of the created JAR :type jar_file: str :param entries: files to put into the JAR :type entries: list[str] :return: None """ # 'jar' adds separate entries for directories, also for empty o...	[ "def", "create_jar", "(", "jar_file", ",", "entries", ")", ":", "# 'jar' adds separate entries for directories, also for empty ones.", "with", "ZipFile", "(", "jar_file", ",", "\"w\"", ")", "as", "jar", ":", "jar", ".", "writestr", "(", "\"META-INF/\"", ",", "\"\"",...	35.9	12.7
def _ParseExample(self, example_features, example_feature_lists, entries, index): """Parses data from an example, populating a dictionary of feature values. Args: example_features: A map of strings to tf.Features from the example. example_feature_lists: A map of strings to tf.Fe...	[ "def", "_ParseExample", "(", "self", ",", "example_features", ",", "example_feature_lists", ",", "entries", ",", "index", ")", ":", "features_seen", "=", "set", "(", ")", "for", "feature_list", ",", "is_feature", "in", "zip", "(", "[", "example_features", ",",...	40.609195	15.563218
def convert_to_sequences(dataset, vocab): """This function takes a dataset and converts it into sequences via multiprocessing """ start = time.time() dataset_vocab = map(lambda x: (x, vocab), dataset) with mp.Pool() as pool: # Each sample is processed in an asynchronous manner. o...	[ "def", "convert_to_sequences", "(", "dataset", ",", "vocab", ")", ":", "start", "=", "time", ".", "time", "(", ")", "dataset_vocab", "=", "map", "(", "lambda", "x", ":", "(", "x", ",", "vocab", ")", ",", "dataset", ")", "with", "mp", ".", "Pool", "...	39.923077	12.846154
def cache_data_model(self, raw): """ Cache the data model json. Take data returned by a requests.get call to Earthref. Parameters ---------- raw: requests.models.Response """ output_json = json.loads(raw.content) output_file = self.find_cached_dm...	[ "def", "cache_data_model", "(", "self", ",", "raw", ")", ":", "output_json", "=", "json", ".", "loads", "(", "raw", ".", "content", ")", "output_file", "=", "self", ".", "find_cached_dm", "(", ")", "json", ".", "dump", "(", "output_json", ",", "open", ...	28.153846	14.307692
def get(self, filter=None, order_by=None, group_by=[], page=None, page_size=None, query_parameters=None, commit=True, async=False, callback=None): """ Fetch object and directly return them Note: `get` won't put the fetched objects in the parent's children list. You c...	[ "def", "get", "(", "self", ",", "filter", "=", "None", ",", "order_by", "=", "None", ",", "group_by", "=", "[", "]", ",", "page", "=", "None", ",", "page_size", "=", "None", ",", "query_parameters", "=", "None", ",", "commit", "=", "True", ",", "as...	54.576923	34.269231
def getBackgroundRange(fitParams): ''' return minimum, average, maximum of the background peak ''' smn, _, _ = getSignalParameters(fitParams) bg = fitParams[0] _, avg, std = bg bgmn = max(0, avg - 3 * std) if avg + 4 * std < smn: bgmx = avg + 4 * std if avg + 3 ...	[ "def", "getBackgroundRange", "(", "fitParams", ")", ":", "smn", ",", "_", ",", "_", "=", "getSignalParameters", "(", "fitParams", ")", "bg", "=", "fitParams", "[", "0", "]", "_", ",", "avg", ",", "std", "=", "bg", "bgmn", "=", "max", "(", "0", ",",...	24.631579	18.210526
def temp_dir(apply_chown=None, apply_chmod=None, remove_using_sudo=None, remove_force=False): """ Creates a temporary directory on the remote machine. The directory is removed when no longer needed. Failure to do so will be ignored. :param apply_chown: Optional; change the owner of the directory. :...	[ "def", "temp_dir", "(", "apply_chown", "=", "None", ",", "apply_chmod", "=", "None", ",", "remove_using_sudo", "=", "None", ",", "remove_force", "=", "False", ")", ":", "path", "=", "get_remote_temp", "(", ")", "try", ":", "if", "apply_chmod", ":", "run", ...	40.607143	19.964286
def add_membership(self, user, role): """ make user a member of a group """ targetGroup = AuthGroup.objects(role=role, creator=self.client).first() if not targetGroup: return False target = AuthMembership.objects(user=user, creator=self.client).first() if not target:...	[ "def", "add_membership", "(", "self", ",", "user", ",", "role", ")", ":", "targetGroup", "=", "AuthGroup", ".", "objects", "(", "role", "=", "role", ",", "creator", "=", "self", ".", "client", ")", ".", "first", "(", ")", "if", "not", "targetGroup", ...	37.428571	20.785714
def _highlight(self, content, ngrams, highlight): """Returns `content` with its n-grams from `ngrams` highlighted (if `add_class` is True) or unhighlighted. :param content: text to be modified :type content: `str` :param ngrams: n-grams to modify :type ngrams: `list` of ...	[ "def", "_highlight", "(", "self", ",", "content", ",", "ngrams", ",", "highlight", ")", ":", "self", ".", "_add_highlight", "=", "highlight", "for", "ngram", "in", "ngrams", ":", "pattern", "=", "self", ".", "_get_regexp_pattern", "(", "ngram", ")", "conte...	36.473684	13.315789
def allow(self): """Allow the add-on to be installed.""" with self.selenium.context(self.selenium.CONTEXT_CHROME): self.find_primary_button().click()	[ "def", "allow", "(", "self", ")", ":", "with", "self", ".", "selenium", ".", "context", "(", "self", ".", "selenium", ".", "CONTEXT_CHROME", ")", ":", "self", ".", "find_primary_button", "(", ")", ".", "click", "(", ")" ]	43.5	13.75
def _read(self, fh, fname): """Parse the TIMER section""" if fname in self._timers: raise self.Error("Cannot overwrite timer associated to: %s " % fname) def parse_line(line): """Parse single line.""" name, vals = line[:25], line[25:].split() try:...	[ "def", "_read", "(", "self", ",", "fh", ",", "fname", ")", ":", "if", "fname", "in", "self", ".", "_timers", ":", "raise", "self", ".", "Error", "(", "\"Cannot overwrite timer associated to: %s \"", "%", "fname", ")", "def", "parse_line", "(", "line", ")",...	34.727273	19.287879
def SCISetStyling(self, line: int, col: int, numChar: int, style: bytearray): """ Pythonic wrapper for the SCI_SETSTYLING command. For example, the following code applies style #3 to the first five characters in the second line of the widget: S...	[ "def", "SCISetStyling", "(", "self", ",", "line", ":", "int", ",", "col", ":", "int", ",", "numChar", ":", "int", ",", "style", ":", "bytearray", ")", ":", "if", "not", "self", ".", "isPositionValid", "(", "line", ",", "col", ")", ":", "return", "p...	30.53125	23.46875
def _set_class_path(cls, module_dict=sys.modules): """Sets the absolute path to this class as a string. Used by the Pipeline API to reconstruct the Pipeline sub-class object at execution time instead of passing around a serialized function. Args: module_dict: Used for testing. """ # Do n...	[ "def", "_set_class_path", "(", "cls", ",", "module_dict", "=", "sys", ".", "modules", ")", ":", "# Do not traverse the class hierarchy fetching the class path attribute.", "found", "=", "cls", ".", "__dict__", ".", "get", "(", "'_class_path'", ")", "if", "found", "i...	40.323529	22.470588
def open(self, fname, mode='rb'): """ (Re-)opens a backup file """ self.close() self.fp = open(fname, mode) self.fname = fname	[ "def", "open", "(", "self", ",", "fname", ",", "mode", "=", "'rb'", ")", ":", "self", ".", "close", "(", ")", "self", ".", "fp", "=", "open", "(", "fname", ",", "mode", ")", "self", ".", "fname", "=", "fname" ]	24	7.714286
def setRecordSet( self, recordSet ): """ Sets the record set instance that this widget will use. :param recordSet \| <orb.RecordSet> """ if ( recordSet ): self.setQuery( recordSet.query() ) self.setGroupBy( recordSet.groupBy() ...	[ "def", "setRecordSet", "(", "self", ",", "recordSet", ")", ":", "if", "(", "recordSet", ")", ":", "self", ".", "setQuery", "(", "recordSet", ".", "query", "(", ")", ")", "self", ".", "setGroupBy", "(", "recordSet", ".", "groupBy", "(", ")", ")", "sel...	34.9	13.7
def _prepare_disks(self, disks_name): """format disks to xfs and mount it""" fstab = '/etc/fstab' for disk in tqdm(disks_name.split(',')): sudo('umount /dev/{0}'.format(disk), warn_only=True) if sudo('mkfs.xfs -f /dev/{0}'.format(disk), warn_only=True).failed: ...	[ "def", "_prepare_disks", "(", "self", ",", "disks_name", ")", ":", "fstab", "=", "'/etc/fstab'", "for", "disk", "in", "tqdm", "(", "disks_name", ".", "split", "(", "','", ")", ")", ":", "sudo", "(", "'umount /dev/{0}'", ".", "format", "(", "disk", ")", ...	55.538462	19.307692
def percentage(value: str) -> float: """ ``argparse`` argument type that checks that its value is a percentage (in the sense of a float in the range [0, 100]). """ try: fvalue = float(value) assert 0 <= fvalue <= 100 except (AssertionError, TypeError, ValueError): raise A...	[ "def", "percentage", "(", "value", ":", "str", ")", "->", "float", ":", "try", ":", "fvalue", "=", "float", "(", "value", ")", "assert", "0", "<=", "fvalue", "<=", "100", "except", "(", "AssertionError", ",", "TypeError", ",", "ValueError", ")", ":", ...	34.083333	13.75
def _find_package(c): """ Try to find 'the' One True Package for this project. Mostly for obtaining the ``_version`` file within it. Uses the ``packaging.package`` config setting if defined. If not defined, fallback is to look for a single top-level Python package (directory containing ``__ini...	[ "def", "_find_package", "(", "c", ")", ":", "# TODO: is there a way to get this from the same place setup.py does w/o", "# setup.py barfing (since setup() runs at import time and assumes CLI use)?", "configured_value", "=", "c", ".", "get", "(", "\"packaging\"", ",", "{", "}", ")...	38.90625	23.34375
def vectorize( self, docs ): ''' Returns the feature vectors for a set of docs. If model is not already be trained, then self.train() is called. Args: docs (dict or list of tuples): asset_id, body_text of documents you wish to featurize. ''' if ...	[ "def", "vectorize", "(", "self", ",", "docs", ")", ":", "if", "type", "(", "docs", ")", "==", "dict", ":", "docs", "=", "docs", ".", "items", "(", ")", "if", "self", ".", "model", "==", "None", ":", "self", ".", "train", "(", "docs", ")", "asse...	34.914286	25.714286
def set_courses(self, course_ids): """Sets the courses. arg: course_ids (osid.id.Id[]): the course ``Ids`` raise: InvalidArgument - ``course_ids`` is invalid raise: NullArgument - ``course_ids`` is ``null`` raise: NoAccess - ``Metadata.isReadOnly()`` is ``true`` *c...	[ "def", "set_courses", "(", "self", ",", "course_ids", ")", ":", "# Implemented from template for osid.learning.ActivityForm.set_assets_template", "if", "not", "isinstance", "(", "course_ids", ",", "list", ")", ":", "raise", "errors", ".", "InvalidArgument", "(", ")", ...	42.190476	14.809524
def setval(self, varname, value): """ Set the value of the variable with the given name. """ if varname in self: self[varname]['value'] = value else: self[varname] = Variable(self.default_type, value=value)	[ "def", "setval", "(", "self", ",", "varname", ",", "value", ")", ":", "if", "varname", "in", "self", ":", "self", "[", "varname", "]", "[", "'value'", "]", "=", "value", "else", ":", "self", "[", "varname", "]", "=", "Variable", "(", "self", ".", ...	32.875	11.875
def servicegroup_add(sg_name, sg_type='HTTP', *connection_args): ''' Add a new service group If no service type is specified, HTTP will be used. Most common service types: HTTP, SSL, and SSL_BRIDGE CLI Example: .. code-block:: bash salt '' netscaler.servicegroup_add 'serviceGroupNam...	[ "def", "servicegroup_add", "(", "sg_name", ",", "sg_type", "=", "'HTTP'", ",", "", "", "connection_args", ")", ":", "ret", "=", "True", "if", "servicegroup_exists", "(", "sg_name", ")", ":", "return", "False", "nitro", "=", "_connect", "(", "", "", "...	29.896552	21.344828
def add_enrichr_parser(subparsers): """Add function 'enrichr' argument parsers.""" argparser_enrichr = subparsers.add_parser("enrichr", help="Using Enrichr API to perform GO analysis.") # group for required options. enrichr_opt = argparser_enrichr.add_argument_group("Input arguments") enrichr_opt....	[ "def", "add_enrichr_parser", "(", "subparsers", ")", ":", "argparser_enrichr", "=", "subparsers", ".", "add_parser", "(", "\"enrichr\"", ",", "help", "=", "\"Using Enrichr API to perform GO analysis.\"", ")", "# group for required options.", "enrichr_opt", "=", "argparser_e...	84.6	55.266667
def decrement(self, subname=None, delta=1): '''Decrement the gauge with `delta` :keyword subname: The subname to report the data to (appended to the client name) :type subname: str :keyword delta: The delta to remove from the gauge :type delta: int >>> gauge...	[ "def", "decrement", "(", "self", ",", "subname", "=", "None", ",", "delta", "=", "1", ")", ":", "delta", "=", "-", "int", "(", "delta", ")", "sign", "=", "\"+\"", "if", "delta", ">=", "0", "else", "\"\"", "return", "self", ".", "_send", "(", "sub...	31.7	17.2
def iplot(self, places=-1, c_poly='default', c_holes='default', c_sop='r', s_sop=25, extra_height=0, ret=False, ax=None): """ Improved plot that allows to visualize the Places in the Space selectively. It also allows to plot polygons and holes in different colors and ...	[ "def", "iplot", "(", "self", ",", "places", "=", "-", "1", ",", "c_poly", "=", "'default'", ",", "c_holes", "=", "'default'", ",", "c_sop", "=", "'r'", ",", "s_sop", "=", "25", ",", "extra_height", "=", "0", ",", "ret", "=", "False", ",", "ax", "...	43.891304	15.717391
def image_groups_get(self, resource_url): """Get handle for image group resource at given Url. Parameters ---------- resource_url : string Url for image group resource at SCO-API Returns ------- scoserv.ImageGroupHandle Handle for local c...	[ "def", "image_groups_get", "(", "self", ",", "resource_url", ")", ":", "# Get resource directory, Json representation, active flag, and cache id", "obj_dir", ",", "obj_json", ",", "is_active", ",", "cache_id", "=", "self", ".", "get_object", "(", "resource_url", ")", "#...	38.217391	17.217391
def add_options(self): """ Add program options. """ super(RtorrentControl, self).add_options() # basic options self.add_bool_option("--help-fields", help="show available fields and their description") self.add_bool_option("-n", "--dry-run", help="...	[ "def", "add_options", "(", "self", ")", ":", "super", "(", "RtorrentControl", ",", "self", ")", ".", "add_options", "(", ")", "# basic options", "self", ".", "add_bool_option", "(", "\"--help-fields\"", ",", "help", "=", "\"show available fields and their descriptio...	55.75	21.26087
def wait(self, container, timeout=None, condition=None): """ Block until a container stops, then return its exit code. Similar to the ``docker wait`` command. Args: container (str or dict): The container to wait on. If a dict, the ``Id`` key is used. ...	[ "def", "wait", "(", "self", ",", "container", ",", "timeout", "=", "None", ",", "condition", "=", "None", ")", ":", "url", "=", "self", ".", "_url", "(", "\"/containers/{0}/wait\"", ",", "container", ")", "params", "=", "{", "}", "if", "condition", "is...	39.764706	19.588235
def ldirectory(inpath, outpath, args, scope): """Compile all *.less files in directory Args: inpath (str): Path to compile outpath (str): Output directory args (object): Argparse Object scope (Scope): Scope object or None """ yacctab = 'yacctab' if args.debug else None ...	[ "def", "ldirectory", "(", "inpath", ",", "outpath", ",", "args", ",", "scope", ")", ":", "yacctab", "=", "'yacctab'", "if", "args", ".", "debug", "else", "None", "if", "not", "outpath", ":", "sys", ".", "exit", "(", "\"Compile directory option needs -o ...\"...	37.519231	12.961538
def classify_clusters(points, n=10): """ Return an array of K-Means cluster classes for an array of `shapely.geometry.Point` objects. """ arr = [[p.x, p.y] for p in points.values] clf = KMeans(n_clusters=n) clf.fit(arr) classes = clf.predict(arr) return classes	[ "def", "classify_clusters", "(", "points", ",", "n", "=", "10", ")", ":", "arr", "=", "[", "[", "p", ".", "x", ",", "p", ".", "y", "]", "for", "p", "in", "points", ".", "values", "]", "clf", "=", "KMeans", "(", "n_clusters", "=", "n", ")", "c...	31.666667	14.555556
def _characteristic_changed(self, characteristic): """Called when the specified characteristic has changed its value.""" # Called when a characteristic is changed. Get the on_changed handler # for this characteristic (if it exists) and call it. on_changed = self._char_on_changed.get(cha...	[ "def", "_characteristic_changed", "(", "self", ",", "characteristic", ")", ":", "# Called when a characteristic is changed. Get the on_changed handler", "# for this characteristic (if it exists) and call it.", "on_changed", "=", "self", ".", "_char_on_changed", ".", "get", "(", ...	57.416667	18.333333
def hash(self, id): """ Creates a unique filename in the cache for the id. """ h = md5(id).hexdigest() return os.path.join(self.path, h+self.type)	[ "def", "hash", "(", "self", ",", "id", ")", ":", "h", "=", "md5", "(", "id", ")", ".", "hexdigest", "(", ")", "return", "os", ".", "path", ".", "join", "(", "self", ".", "path", ",", "h", "+", "self", ".", "type", ")" ]	24.857143	17.285714
def match(self, context): """Returns True if the current context matches, False if it doesn't and None if matching is not finished, ie must be resumed after child contexts have been matched.""" while context.remaining_codes() > 0 and context.has_matched is None: opcode = cont...	[ "def", "match", "(", "self", ",", "context", ")", ":", "while", "context", ".", "remaining_codes", "(", ")", ">", "0", "and", "context", ".", "has_matched", "is", "None", ":", "opcode", "=", "context", ".", "peek_code", "(", ")", "if", "not", "self", ...	47.181818	10.363636
def angToDisc(nside, lon, lat, radius, inclusive=False, fact=4, nest=False): """ Wrap `query_disc` to use lon, lat, and radius in degrees. """ vec = angToVec(lon,lat) return query_disc(nside,vec,radius,inclusive,fact,nest)	[ "def", "angToDisc", "(", "nside", ",", "lon", ",", "lat", ",", "radius", ",", "inclusive", "=", "False", ",", "fact", "=", "4", ",", "nest", "=", "False", ")", ":", "vec", "=", "angToVec", "(", "lon", ",", "lat", ")", "return", "query_disc", "(", ...	39.5	14.833333
def __insert_represented_points(self, cluster): """! @brief Insert representation points to the k-d tree. @param[in] cluster (cure_cluster): Cluster whose representation points should be inserted. """ for point in cluster.rep: self....	[ "def", "__insert_represented_points", "(", "self", ",", "cluster", ")", ":", "for", "point", "in", "cluster", ".", "rep", ":", "self", ".", "__tree", ".", "insert", "(", "point", ",", "cluster", ")" ]	34	19.3
def branch(self, branch_name, start_point='HEAD', force=True, checkout=False): """Create branch as in `git branch <branch_name> <start_point>`. If 'checkout' is True, checkout the branch after creation. """ return git_branch( self.repo_dir, branch_name, start_...	[ "def", "branch", "(", "self", ",", "branch_name", ",", "start_point", "=", "'HEAD'", ",", "force", "=", "True", ",", "checkout", "=", "False", ")", ":", "return", "git_branch", "(", "self", ".", "repo_dir", ",", "branch_name", ",", "start_point", ",", "f...	40.222222	16.111111
def add_resource(mt_file, ref, cache): """Add a resources entry, downloading the intuiting the file, replacing entries with the same reference""" if isinstance(mt_file, MetapackDoc): doc = mt_file else: doc = MetapackDoc(mt_file) if not 'Resources' in doc: doc.new_section('...	[ "def", "add_resource", "(", "mt_file", ",", "ref", ",", "cache", ")", ":", "if", "isinstance", "(", "mt_file", ",", "MetapackDoc", ")", ":", "doc", "=", "mt_file", "else", ":", "doc", "=", "MetapackDoc", "(", "mt_file", ")", "if", "not", "'Resources'", ...	25.435897	23.717949
def hastext(self, cls='current',strict=True, correctionhandling=CorrectionHandling.CURRENT): """See :meth:`AbstractElement.hastext`""" if cls == 'original': correctionhandling = CorrectionHandling.ORIGINAL #backward compatibility if correctionhandling in (CorrectionHandling.CURRENT, CorrectionHa...	[ "def", "hastext", "(", "self", ",", "cls", "=", "'current'", ",", "strict", "=", "True", ",", "correctionhandling", "=", "CorrectionHandling", ".", "CURRENT", ")", ":", "if", "cls", "==", "'original'", ":", "correctionhandling", "=", "CorrectionHandling", ".",...	61.416667	28.666667
def _numbers_decades(N): """ >>> _numbers_decades(45) ' 1 2 3 4' """ N = N // 10 lst = range(1, N + 1) return "".join(map(lambda i: "%10s" % i, lst))	[ "def", "_numbers_decades", "(", "N", ")", ":", "N", "=", "N", "//", "10", "lst", "=", "range", "(", "1", ",", "N", "+", "1", ")", "return", "\"\"", ".", "join", "(", "map", "(", "lambda", "i", ":", "\"%10s\"", "%", "i", ",", "lst", ")", ")" ]	25.25	10.5
def register_lookup(cls, lookup, lookup_name=None): """Register a Lookup to a class""" if lookup_name is None: lookup_name = lookup.lookup_name if 'class_lookups' not in cls.__dict__: cls.class_lookups = {} cls.class_lookups[lookup_name] = lookup cls._cle...	[ "def", "register_lookup", "(", "cls", ",", "lookup", ",", "lookup_name", "=", "None", ")", ":", "if", "lookup_name", "is", "None", ":", "lookup_name", "=", "lookup", ".", "lookup_name", "if", "'class_lookups'", "not", "in", "cls", ".", "__dict__", ":", "cl...	32	13.454545
def get(self, key, cache=None): """Query the server for an item, parse the JSON, and return the result. Keyword arguments: key -- the key of the item that you'd like to retrieve. Required. cache -- the name of the cache that the item resides in. Defaults to None, which ...	[ "def", "get", "(", "self", ",", "key", ",", "cache", "=", "None", ")", ":", "if", "cache", "is", "None", ":", "cache", "=", "self", ".", "name", "if", "cache", "is", "None", ":", "raise", "ValueError", "(", "\"Cache name must be set\"", ")", "cache", ...	39.944444	14.611111
def set_published_date(self, date=None): """ Set the published date of a IOC to the current date. User may specify the date they want to set as well. :param date: Date value to set the published date to. This should be in the xsdDate form. This defaults to the current date if ...	[ "def", "set_published_date", "(", "self", ",", "date", "=", "None", ")", ":", "if", "date", ":", "match", "=", "re", ".", "match", "(", "DATE_REGEX", ",", "date", ")", "if", "not", "match", ":", "raise", "IOCParseError", "(", "'Published date is not valid....	43.235294	20.647059
def _sort_by_region(fnames, regions, ref_file, config): """Sort a set of regionally split files by region for ordered output. """ contig_order = {} for i, sq in enumerate(ref.file_contigs(ref_file, config)): contig_order[sq.name] = i sitems = [] assert len(regions) == len(fnames), (regio...	[ "def", "_sort_by_region", "(", "fnames", ",", "regions", ",", "ref_file", ",", "config", ")", ":", "contig_order", "=", "{", "}", "for", "i", ",", "sq", "in", "enumerate", "(", "ref", ".", "file_contigs", "(", "ref_file", ",", "config", ")", ")", ":", ...	40.086957	13.478261
def include(context, bundle_name, version): """Include a bundle of files into the internal space. Use bundle name if you simply want to inlcude the latest version. """ store = Store(context.obj['database'], context.obj['root']) if version: version_obj = store.Version.get(version) if...	[ "def", "include", "(", "context", ",", "bundle_name", ",", "version", ")", ":", "store", "=", "Store", "(", "context", ".", "obj", "[", "'database'", "]", ",", "context", ".", "obj", "[", "'root'", "]", ")", "if", "version", ":", "version_obj", "=", ...	36.2	18.12
def _after_valid_time_range(self): """ In case of uncertainty (times not specified), we assume that we are in a valid range. """ if self.end_time is not None: try: if self.time > self.end_time: return True except TypeError: ...	[ "def", "_after_valid_time_range", "(", "self", ")", ":", "if", "self", ".", "end_time", "is", "not", "None", ":", "try", ":", "if", "self", ".", "time", ">", "self", ".", "end_time", ":", "return", "True", "except", "TypeError", ":", "return", "False", ...	32.272727	13
def source_present(name, source_type='imgapi'): ''' Ensure an image source is present on the computenode name : string source url source_type : string source type (imgapi or docker) ''' ret = {'name': name, 'changes': {}, 'result': None, 'comment...	[ "def", "source_present", "(", "name", ",", "source_type", "=", "'imgapi'", ")", ":", "ret", "=", "{", "'name'", ":", "name", ",", "'changes'", ":", "{", "}", ",", "'result'", ":", "None", ",", "'comment'", ":", "''", "}", "if", "name", "in", "__salt_...	29.25	20.694444
def _shift2boolean(self, q_mesh_shift, is_gamma_center=False, tolerance=1e-5): """ Tolerance is used to judge zero/half gird shift. This value is not necessary to be changed usually. """ if q_mesh_shift is None:...	[ "def", "_shift2boolean", "(", "self", ",", "q_mesh_shift", ",", "is_gamma_center", "=", "False", ",", "tolerance", "=", "1e-5", ")", ":", "if", "q_mesh_shift", "is", "None", ":", "shift", "=", "np", ".", "zeros", "(", "3", ",", "dtype", "=", "'double'", ...	34.5	15.730769
def require_axis(f): """ Check if the object of the function has axis and sel_axis members """ @wraps(f) def _wrapper(self, args, *kwargs): if None in (self.axis, self.sel_axis): raise ValueError('%(func_name) requires the node %(node)s ' 'to have an axis and a sel...	[ "def", "require_axis", "(", "f", ")", ":", "@", "wraps", "(", "f", ")", "def", "_wrapper", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "if", "None", "in", "(", "self", ".", "axis", ",", "self", ".", "sel_axis", ")", ":", ...	34.769231	21
def classify_harmonic(self, partial_labels, use_CMN=True): '''Harmonic function method for semi-supervised classification, also known as the Gaussian Mean Fields algorithm. partial_labels: (n,) array of integer labels, -1 for unlabeled. use_CMN : when True, apply Class Mass Normalization From "Sem...	[ "def", "classify_harmonic", "(", "self", ",", "partial_labels", ",", "use_CMN", "=", "True", ")", ":", "# prepare labels", "labels", "=", "np", ".", "array", "(", "partial_labels", ",", "copy", "=", "True", ")", "unlabeled", "=", "labels", "==", "-", "1", ...	30.027027	21.540541
def get_pubkey(self): """ Get the public key of the certificate signing request. :return: The public key. :rtype: :py:class:`PKey` """ pkey = PKey.__new__(PKey) pkey._pkey = _lib.X509_REQ_get_pubkey(self._req) _openssl_assert(pkey._pkey != _ffi.NULL) ...	[ "def", "get_pubkey", "(", "self", ")", ":", "pkey", "=", "PKey", ".", "__new__", "(", "PKey", ")", "pkey", ".", "_pkey", "=", "_lib", ".", "X509_REQ_get_pubkey", "(", "self", ".", "_req", ")", "_openssl_assert", "(", "pkey", ".", "_pkey", "!=", "_ffi",...	32.076923	13.615385
def connectRelay(self): """Builds the target protocol and connects it to the relay transport. """ self.protocol = self.connector.buildProtocol(None) self.connected = True self.protocol.makeConnection(self)	[ "def", "connectRelay", "(", "self", ")", ":", "self", ".", "protocol", "=", "self", ".", "connector", ".", "buildProtocol", "(", "None", ")", "self", ".", "connected", "=", "True", "self", ".", "protocol", ".", "makeConnection", "(", "self", ")" ]	40	8
def rolling_percentileofscore(series, window, min_periods=None): """Computue the score percentile for the specified window.""" import scipy.stats as stats def _percentile(arr): score = arr[-1] vals = arr[:-1] return stats.percentileofscore(vals, score) notnull = series.dropna()...	[ "def", "rolling_percentileofscore", "(", "series", ",", "window", ",", "min_periods", "=", "None", ")", ":", "import", "scipy", ".", "stats", "as", "stats", "def", "_percentile", "(", "arr", ")", ":", "score", "=", "arr", "[", "-", "1", "]", "vals", "=...	36	21
def _determine_stream_track(self,nTrackChunks): """Determine the track of the stream in real space""" #Determine how much orbital time is necessary for the progenitor's orbit to cover the stream if nTrackChunks is None: #default is floor(self._deltaAngleTrack/0.15)+1 self...	[ "def", "_determine_stream_track", "(", "self", ",", "nTrackChunks", ")", ":", "#Determine how much orbital time is necessary for the progenitor's orbit to cover the stream", "if", "nTrackChunks", "is", "None", ":", "#default is floor(self._deltaAngleTrack/0.15)+1", "self", ".", "_n...	60.884058	24.905797
def to_array(self): """ Serializes this InlineQueryResultGif to a dictionary. :return: dictionary representation of this object. :rtype: dict """ array = super(InlineQueryResultGif, self).to_array() # 'type' and 'id' given by superclass array['gif_url'] =...	[ "def", "to_array", "(", "self", ")", ":", "array", "=", "super", "(", "InlineQueryResultGif", ",", "self", ")", ".", "to_array", "(", ")", "# 'type' and 'id' given by superclass", "array", "[", "'gif_url'", "]", "=", "u", "(", "self", ".", "gif_url", ")", ...	51.214286	21.5
def get_all_build_config_set_records(self, id, **kwargs): """ Get all build config set execution records associated with this build config set, returns empty list if none are found This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, ple...	[ "def", "get_all_build_config_set_records", "(", "self", ",", "id", ",", "", "", "kwargs", ")", ":", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'callback'", ")", ":", "return", "self", ".", "get_all_build_...	45.931034	19.655172
def cmd_ip_internal(verbose): """Get the local IP address(es) of the local interfaces. Example: \b $ habu.ip.internal { "lo": { "ipv4": [ { "addr": "127.0.0.1", "netmask": "255.0.0.0", "peer": "127.0.0.1" } ], "l...	[ "def", "cmd_ip_internal", "(", "verbose", ")", ":", "if", "verbose", ":", "logging", ".", "basicConfig", "(", "level", "=", "logging", ".", "INFO", ",", "format", "=", "'%(message)s'", ")", "print", "(", "\"Gathering NIC details...\"", ",", "file", "=", "sys...	21.093023	23.255814
def python(self, cmd): """Execute a python script using the virtual environment python.""" python_bin = self.cmd_path('python') cmd = '{0} {1}'.format(python_bin, cmd) return self._execute(cmd)	[ "def", "python", "(", "self", ",", "cmd", ")", ":", "python_bin", "=", "self", ".", "cmd_path", "(", "'python'", ")", "cmd", "=", "'{0} {1}'", ".", "format", "(", "python_bin", ",", "cmd", ")", "return", "self", ".", "_execute", "(", "cmd", ")" ]	44.2	7.2
def make_cluster_vector(rev_dict, n_src): """ Converts the cluster membership dictionary to an array Parameters ---------- rev_dict : dict(int:int) A single valued dictionary pointing from source index to cluster key for each source in a cluster. n_src : int Number of ...	[ "def", "make_cluster_vector", "(", "rev_dict", ",", "n_src", ")", ":", "out_array", "=", "-", "1", "*", "np", ".", "ones", "(", "(", "n_src", ")", ",", "int", ")", "for", "k", ",", "v", "in", "rev_dict", ".", "items", "(", ")", ":", "out_array", ...	30.458333	19
def _prepare_init_params_from_job_description(cls, job_details, model_channel_name=None): """Convert the job description to init params that can be handled by the class constructor Args: job_details: the returned job details from a describe_training_job API call. model_channel_n...	[ "def", "_prepare_init_params_from_job_description", "(", "cls", ",", "job_details", ",", "model_channel_name", "=", "None", ")", ":", "init_params", "=", "super", "(", "Framework", ",", "cls", ")", ".", "_prepare_init_params_from_job_description", "(", "job_details", ...	47.424242	29.939394
def user(self, user: str) -> "ChildHTTPAPI": """ Get a child HTTPAPI instance. Args: user: The Matrix ID of the user whose API to get. Returns: A HTTPAPI instance that always uses the given Matrix ID. """ if self.is_real_user: raise V...	[ "def", "user", "(", "self", ",", "user", ":", "str", ")", "->", "\"ChildHTTPAPI\"", ":", "if", "self", ".", "is_real_user", ":", "raise", "ValueError", "(", "\"Can't get child of real user\"", ")", "try", ":", "return", "self", ".", "children", "[", "user", ...	27.947368	17.105263
def get_header_path() -> str: """Return local folder path of header files.""" import os return os.path.abspath(os.path.dirname(os.path.realpath(__file__))) + '/headers/'	[ "def", "get_header_path", "(", ")", "->", "str", ":", "import", "os", "return", "os", ".", "path", ".", "abspath", "(", "os", ".", "path", ".", "dirname", "(", "os", ".", "path", ".", "realpath", "(", "__file__", ")", ")", ")", "+", "'/headers/'" ]	44.5	20.75
def _set_module_names_for_sphinx(modules: List, new_name: str): """ Trick sphinx into displaying the desired module in these objects' documentation. """ for obj in modules: obj.__module__ = new_name	[ "def", "_set_module_names_for_sphinx", "(", "modules", ":", "List", ",", "new_name", ":", "str", ")", ":", "for", "obj", "in", "modules", ":", "obj", ".", "__module__", "=", "new_name" ]	52.75	11.75
def rotate_slaves(self): "Round-robin slave balancer" slaves = self.sentinel_manager.discover_slaves(self.service_name) if slaves: if self.slave_rr_counter is None: self.slave_rr_counter = random.randint(0, len(slaves) - 1) for _ in xrange(len(slaves)): ...	[ "def", "rotate_slaves", "(", "self", ")", ":", "slaves", "=", "self", ".", "sentinel_manager", ".", "discover_slaves", "(", "self", ".", "service_name", ")", "if", "slaves", ":", "if", "self", ".", "slave_rr_counter", "is", "None", ":", "self", ".", "slave...	42.352941	15.529412
def ParseJavaFlags(self, start_line=0): """Parse Java style flags (com.google.common.flags).""" # The java flags prints starts with a "Standard flags" "module" # that doesn't follow the standard module syntax. modname = 'Standard flags' # name of current module self.module_list.append(modna...	[ "def", "ParseJavaFlags", "(", "self", ",", "start_line", "=", "0", ")", ":", "# The java flags prints starts with a \"Standard flags\" \"module\"", "# that doesn't follow the standard module syntax.", "modname", "=", "'Standard flags'", "# name of current module", "self", ".", "m...	35.891304	15.869565
def interact_alice(agent: Agent): """ Exchange messages between basic pipelines and the Yandex.Dialogs service. If the pipeline returns multiple values, only the first one is forwarded to Yandex. """ data = request.get_json() text = data['request'].get('command', '').strip() payload = data['...	[ "def", "interact_alice", "(", "agent", ":", "Agent", ")", ":", "data", "=", "request", ".", "get_json", "(", ")", "text", "=", "data", "[", "'request'", "]", ".", "get", "(", "'command'", ",", "''", ")", ".", "strip", "(", ")", "payload", "=", "dat...	33.324324	20.621622
def count_alleles(self, max_allele=None, subpop=None): """Count the number of calls of each allele per variant. Parameters ---------- max_allele : int, optional The highest allele index to count. Alleles greater than this index will be ignored. subpop : a...	[ "def", "count_alleles", "(", "self", ",", "max_allele", "=", "None", ",", "subpop", "=", "None", ")", ":", "# check inputs", "subpop", "=", "_normalize_subpop_arg", "(", "subpop", ",", "self", ".", "shape", "[", "1", "]", ")", "# determine alleles to count", ...	28.531915	21.574468
def _ixs(self, i, axis=0): """ Return the i-th value or values in the Series by location. Parameters ---------- i : int, slice, or sequence of integers Returns ------- scalar (int) or Series (slice, sequence) """ try: # dispa...	[ "def", "_ixs", "(", "self", ",", "i", ",", "axis", "=", "0", ")", ":", "try", ":", "# dispatch to the values if we need", "values", "=", "self", ".", "_values", "if", "isinstance", "(", "values", ",", "np", ".", "ndarray", ")", ":", "return", "libindex",...	30.75	17.25
def set_world(self, grd, start_y_x, y_x): """ tell the agent to move to location y,x Why is there another grd object in the agent? Because this is NOT the main grid, rather a copy for the agent to overwrite with planning routes, etc. The real grid is initialised in Worl...	[ "def", "set_world", "(", "self", ",", "grd", ",", "start_y_x", ",", "y_x", ")", ":", "self", ".", "grd", "=", "grd", "self", ".", "start_y", "=", "start_y_x", "[", "0", "]", "self", ".", "start_x", "=", "start_y_x", "[", "1", "]", "self", ".", "c...	42.111111	13

def filter(self, value=None, model=None, context=None): """ Sequentially applies all the filters to provided value :param value: a value to filter :param model: parent entity :param context: filtering context, usually parent entity :return: filtered value """ ...

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32.444444

13.444444

def search_for_devices_by_serial_number(self, sn): """ Returns a list of device objects that match the serial number in param 'sn'. This will match partial serial numbers. """ import re sn_search = re.compile(sn) matches = [] for dev...

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32.608696

18.521739

def GetMTime(path): ''' :param unicode path: Path to file or directory :rtype: float :returns: Modification time for path. If this is a directory, the highest mtime from files inside it will be returned. @note: In some Linux distros (such as CentOs, or anything wit...

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26.692308

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def create_edges(self): """Set up edge-node and edge-cell relations. """ # Reshape into individual edges. # Sort the columns to make it possible for `unique()` to identify # individual edges. s = self.idx_hierarchy.shape a = numpy.sort(self.idx_hierarchy.reshape(s...

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31.666667

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def callprop(self, prop, *args): '''Call a property prop as a method (this will be self). NOTE: dont pass this and arguments here, these will be added automatically!''' if not isinstance(prop, basestring): prop = prop.to_string().value cand = self.get(prop) i...

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40

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def shift_up_left(self, times=1): """ Finds Location shifted up left by 1 :rtype: Location """ try: return Location(self._rank + times, self._file - times) except IndexError as e: raise IndexError(e)

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26.3

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def check_vprint(s, vprinter): '''checked verbose printing''' if vprinter is True: print(s); elif callable(vprinter): vprinter(s);

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25.5

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def serialize(self): """ Convert the data to one that can be saved in h5 structures Returns: pandas.DataFrame: like a cell data frame but serialized. columns """ df = self.copy() df['scored_calls'] = df['scored_calls'].apply(lambda x: json.dumps(x)) d...

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46.733333

27

def parse_object_type_extension(lexer: Lexer) -> ObjectTypeExtensionNode: """ObjectTypeExtension""" start = lexer.token expect_keyword(lexer, "extend") expect_keyword(lexer, "type") name = parse_name(lexer) interfaces = parse_implements_interfaces(lexer) directives = parse_directives(lexer, ...

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33.888889

12.277778

def handle_presence(self, old_present): ''' Fire presence events if enabled ''' # On the first run it may need more time for the EventPublisher # to come up and be ready. Set the timeout to account for this. if self.presence_events and self.event.connect_pull(timeout=3): ...

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46.368421

15.105263

def early_warning(iterable, name='this generator'): ''' This function logs an early warning that the generator is empty. This is handy for times when you're manually playing with generators and would appreciate the console warning you ahead of time that your generator is now empty, instead of being sur...

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33.55

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def dataframe(self): """ Returns a ``pandas DataFrame`` containing all other relevant class properties and values for the specified game. """ fields_to_include = { 'assist_percentage': self.assist_percentage, 'assists': self.assists, 'block_per...

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51.478261

16.391304

def value_for_keypath(obj, path): """Get value from walking key path with start object obj. """ val = obj for part in path.split('.'): match = re.match(list_index_re, part) if match is not None: val = _extract(val, match.group(1)) if not isinstance(val, list) and ...

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33.529412

12.588235

def rigid_linear_interpolate(x_axis, y_axis, x_new_axis): """Interpolate a y = f(x) function using linear interpolation. Rigid means the x_new_axis has to be in x_axis's range. """ f = interp1d(x_axis, y_axis) return f(x_new_axis)

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35

14.285714

def get_plugin_meta(plugins): """ Returns meta data about plugins. :param plugins: A list of plugins. :type plugins: list :returns: A list of dicts containing plugin meta data. :rtype: list """ return [ { "name": p.name, "version": p.version, ...

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22.315789

16.105263

def CompleteBreakpoint(self, breakpoint_id): """Marks the specified breaking as completed. Appends the ID to set of completed breakpoints and clears it. Args: breakpoint_id: breakpoint ID to complete. """ with self._lock: self._completed.add(breakpoint_id) if breakpoint_id in sel...

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30.583333

14.583333

def facet_raw(self, **kw): """ Return a new S instance with raw facet args combined with existing set. """ items = kw.items() if six.PY3: items = list(items) return self._clone(next_step=('facet_raw', items))

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29.777778

13.333333

def radio_buttons_clicked(self): """Handler when selected radio button changed.""" # Disable all spin boxes for spin_box in list(self.spin_boxes.values()): spin_box.setEnabled(False) # Disable list widget self.list_widget.setEnabled(False) # Get selected radi...

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43.809524

14.238095

def get_interface_switch(self, nexus_host, intf_type, interface): """Get the interface data from host. :param nexus_host: IP address of Nexus switch :param intf_type: String which specifies interface type. example: ethernet :param...

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39.038462

17.538462

def expand_relative_uri(self, context, uri): """If uri is relative then expand in context. Prints warning if expansion happens. """ full_uri = urljoin(context, uri) if (full_uri != uri): print(" WARNING - expanded relative URI to %s" % (full_uri)) uri = ...

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33.9

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def complain(self, id, is_spam): """ http://api.yandex.ru/cleanweb/doc/dg/concepts/complain.xml""" r = self.request('post', 'http://cleanweb-api.yandex.ru/1.0/complain', data={'id': id, 'spamtype': 'spam' if is_spam else 'ham'}) return True

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57

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def list_backends(): """Return installed backends. Backends are installed python packages named pyvisa-<something> where <something> is the name of the backend. :rtype: list """ return ['ni'] + [name for (loader, name, ispkg) in pkgutil.iter_modules() if name.startswith('p...

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35.3

25.9

def searchQueryAll(self, *args, **kwargs): """ Experimental Method Execute a Search query, retrieving all rows. This method returns a :class:`Deferred` object which is executed with a :class:`~.SearchRequest` object. The object may be iterated over to yield the rows in ...

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29.828571

21.6

def get_extr_license_ident(self, extr_lic): """ Return an a license identifier from an ExtractedLicense or None. """ identifier_tripples = list(self.graph.triples((extr_lic, self.spdx_namespace['licenseId'], None))) if not identifier_tripples: self.error = True ...

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35.894737

20.315789

def function( name, tgt, ssh=False, tgt_type='glob', ret='', ret_config=None, ret_kwargs=None, expect_minions=False, fail_minions=None, fail_function=None, arg=None, kwarg=None, timeout=None, batch=None, ...

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29.346369

22.75419

def deprecated(reason, replacement, gone_in, issue=None): # type: (str, Optional[str], Optional[str], Optional[int]) -> None """Helper to deprecate existing functionality. reason: Textual reason shown to the user about why this functionality has been deprecated. replacement: Tex...

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42.166667

23.75

def _divf16(ins): """ Divides 2 32bit (16.16) fixed point numbers. The result is pushed onto the stack. Optimizations: * If 2nd operand is 1, do nothing * If 2nd operand is -1, do NEG32 """ op1, op2 = tuple(ins.quad[2:]) if is_float(op2): if float(op2) == 1: ...

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26.25

16.607143

def _read_register(self, reg): """Read 16 bit register value.""" self.buf[0] = reg with self.i2c_device as i2c: i2c.write(self.buf, end=1, stop=False) i2c.readinto(self.buf, end=2) return self.buf[0] << 8 | self.buf[1]

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38.285714

6.428571

87.722222

56.833333

def GetClientsForHashes(cls, hashes, token=None, age=aff4.NEWEST_TIME): """Yields (hash, client_files) pairs for all the specified hashes. Args: hashes: List of RDFURN's. token: Security token. age: AFF4 age specification. Only get hits corresponding to the given age spec. Should be a...

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43

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def _process_tasks(self, task_queue, rmgr, logger, mq_hostname, port, local_prof, sid): ''' **Purpose**: The new thread that gets spawned by the main tmgr process invokes this function. This function receives tasks from 'task_queue' and submits them to the RADICAL Pilot RTS. ''' ...

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def memory_pour(buffer_, *args, **kwargs): """Yield data from entries.""" def opener(archive_res): _LOGGER.debug("Opening from (%d) bytes (memory_pour).", len(buffer_)) _archive_read_open_memory(archive_res, buffer_) return _pour(opener, *args, flags=0, **kwargs)

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def create_jar(jar_file, entries): """ Create JAR from given entries. :param jar_file: filename of the created JAR :type jar_file: str :param entries: files to put into the JAR :type entries: list[str] :return: None """ # 'jar' adds separate entries for directories, also for empty o...

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def _ParseExample(self, example_features, example_feature_lists, entries, index): """Parses data from an example, populating a dictionary of feature values. Args: example_features: A map of strings to tf.Features from the example. example_feature_lists: A map of strings to tf.Fe...

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def convert_to_sequences(dataset, vocab): """This function takes a dataset and converts it into sequences via multiprocessing """ start = time.time() dataset_vocab = map(lambda x: (x, vocab), dataset) with mp.Pool() as pool: # Each sample is processed in an asynchronous manner. o...

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def cache_data_model(self, raw): """ Cache the data model json. Take data returned by a requests.get call to Earthref. Parameters ---------- raw: requests.models.Response """ output_json = json.loads(raw.content) output_file = self.find_cached_dm...

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def get(self, filter=None, order_by=None, group_by=[], page=None, page_size=None, query_parameters=None, commit=True, async=False, callback=None): """ Fetch object and directly return them Note: `get` won't put the fetched objects in the parent's children list. You c...

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def getBackgroundRange(fitParams): ''' return minimum, average, maximum of the background peak ''' smn, _, _ = getSignalParameters(fitParams) bg = fitParams[0] _, avg, std = bg bgmn = max(0, avg - 3 * std) if avg + 4 * std < smn: bgmx = avg + 4 * std if avg + 3 ...

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def temp_dir(apply_chown=None, apply_chmod=None, remove_using_sudo=None, remove_force=False): """ Creates a temporary directory on the remote machine. The directory is removed when no longer needed. Failure to do so will be ignored. :param apply_chown: Optional; change the owner of the directory. :...

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def add_membership(self, user, role): """ make user a member of a group """ targetGroup = AuthGroup.objects(role=role, creator=self.client).first() if not targetGroup: return False target = AuthMembership.objects(user=user, creator=self.client).first() if not target:...

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def _highlight(self, content, ngrams, highlight): """Returns `content` with its n-grams from `ngrams` highlighted (if `add_class` is True) or unhighlighted. :param content: text to be modified :type content: `str` :param ngrams: n-grams to modify :type ngrams: `list` of ...

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def allow(self): """Allow the add-on to be installed.""" with self.selenium.context(self.selenium.CONTEXT_CHROME): self.find_primary_button().click()

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def _read(self, fh, fname): """Parse the TIMER section""" if fname in self._timers: raise self.Error("Cannot overwrite timer associated to: %s " % fname) def parse_line(line): """Parse single line.""" name, vals = line[:25], line[25:].split() try:...

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def SCISetStyling(self, line: int, col: int, numChar: int, style: bytearray): """ Pythonic wrapper for the SCI_SETSTYLING command. For example, the following code applies style #3 to the first five characters in the second line of the widget: S...

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def _set_class_path(cls, module_dict=sys.modules): """Sets the absolute path to this class as a string. Used by the Pipeline API to reconstruct the Pipeline sub-class object at execution time instead of passing around a serialized function. Args: module_dict: Used for testing. """ # Do n...

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def open(self, fname, mode='rb'): """ (Re-)opens a backup file """ self.close() self.fp = open(fname, mode) self.fname = fname

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def setRecordSet( self, recordSet ): """ Sets the record set instance that this widget will use. :param recordSet | <orb.RecordSet> """ if ( recordSet ): self.setQuery( recordSet.query() ) self.setGroupBy( recordSet.groupBy() ...

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def _prepare_disks(self, disks_name): """format disks to xfs and mount it""" fstab = '/etc/fstab' for disk in tqdm(disks_name.split(',')): sudo('umount /dev/{0}'.format(disk), warn_only=True) if sudo('mkfs.xfs -f /dev/{0}'.format(disk), warn_only=True).failed: ...

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def percentage(value: str) -> float: """ ``argparse`` argument type that checks that its value is a percentage (in the sense of a float in the range [0, 100]). """ try: fvalue = float(value) assert 0 <= fvalue <= 100 except (AssertionError, TypeError, ValueError): raise A...

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def _find_package(c): """ Try to find 'the' One True Package for this project. Mostly for obtaining the ``_version`` file within it. Uses the ``packaging.package`` config setting if defined. If not defined, fallback is to look for a single top-level Python package (directory containing ``__ini...

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def vectorize( self, docs ): ''' Returns the feature vectors for a set of docs. If model is not already be trained, then self.train() is called. Args: docs (dict or list of tuples): asset_id, body_text of documents you wish to featurize. ''' if ...

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def set_courses(self, course_ids): """Sets the courses. arg: course_ids (osid.id.Id[]): the course ``Ids`` raise: InvalidArgument - ``course_ids`` is invalid raise: NullArgument - ``course_ids`` is ``null`` raise: NoAccess - ``Metadata.isReadOnly()`` is ``true`` *c...

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def setval(self, varname, value): """ Set the value of the variable with the given name. """ if varname in self: self[varname]['value'] = value else: self[varname] = Variable(self.default_type, value=value)

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def servicegroup_add(sg_name, sg_type='HTTP', **connection_args): ''' Add a new service group If no service type is specified, HTTP will be used. Most common service types: HTTP, SSL, and SSL_BRIDGE CLI Example: .. code-block:: bash salt '*' netscaler.servicegroup_add 'serviceGroupNam...

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def add_enrichr_parser(subparsers): """Add function 'enrichr' argument parsers.""" argparser_enrichr = subparsers.add_parser("enrichr", help="Using Enrichr API to perform GO analysis.") # group for required options. enrichr_opt = argparser_enrichr.add_argument_group("Input arguments") enrichr_opt....

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def decrement(self, subname=None, delta=1): '''Decrement the gauge with `delta` :keyword subname: The subname to report the data to (appended to the client name) :type subname: str :keyword delta: The delta to remove from the gauge :type delta: int >>> gauge...

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def iplot(self, places=-1, c_poly='default', c_holes='default', c_sop='r', s_sop=25, extra_height=0, ret=False, ax=None): """ Improved plot that allows to visualize the Places in the Space selectively. It also allows to plot polygons and holes in different colors and ...

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def image_groups_get(self, resource_url): """Get handle for image group resource at given Url. Parameters ---------- resource_url : string Url for image group resource at SCO-API Returns ------- scoserv.ImageGroupHandle Handle for local c...

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def add_options(self): """ Add program options. """ super(RtorrentControl, self).add_options() # basic options self.add_bool_option("--help-fields", help="show available fields and their description") self.add_bool_option("-n", "--dry-run", help="...

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def wait(self, container, timeout=None, condition=None): """ Block until a container stops, then return its exit code. Similar to the ``docker wait`` command. Args: container (str or dict): The container to wait on. If a dict, the ``Id`` key is used. ...

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def ldirectory(inpath, outpath, args, scope): """Compile all *.less files in directory Args: inpath (str): Path to compile outpath (str): Output directory args (object): Argparse Object scope (Scope): Scope object or None """ yacctab = 'yacctab' if args.debug else None ...

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def classify_clusters(points, n=10): """ Return an array of K-Means cluster classes for an array of `shapely.geometry.Point` objects. """ arr = [[p.x, p.y] for p in points.values] clf = KMeans(n_clusters=n) clf.fit(arr) classes = clf.predict(arr) return classes

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def _characteristic_changed(self, characteristic): """Called when the specified characteristic has changed its value.""" # Called when a characteristic is changed. Get the on_changed handler # for this characteristic (if it exists) and call it. on_changed = self._char_on_changed.get(cha...

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def hash(self, id): """ Creates a unique filename in the cache for the id. """ h = md5(id).hexdigest() return os.path.join(self.path, h+self.type)

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def match(self, context): """Returns True if the current context matches, False if it doesn't and None if matching is not finished, ie must be resumed after child contexts have been matched.""" while context.remaining_codes() > 0 and context.has_matched is None: opcode = cont...

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def angToDisc(nside, lon, lat, radius, inclusive=False, fact=4, nest=False): """ Wrap `query_disc` to use lon, lat, and radius in degrees. """ vec = angToVec(lon,lat) return query_disc(nside,vec,radius,inclusive,fact,nest)

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def __insert_represented_points(self, cluster): """! @brief Insert representation points to the k-d tree. @param[in] cluster (cure_cluster): Cluster whose representation points should be inserted. """ for point in cluster.rep: self....

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def branch(self, branch_name, start_point='HEAD', force=True, checkout=False): """Create branch as in `git branch <branch_name> <start_point>`. If 'checkout' is True, checkout the branch after creation. """ return git_branch( self.repo_dir, branch_name, start_...

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def add_resource(mt_file, ref, cache): """Add a resources entry, downloading the intuiting the file, replacing entries with the same reference""" if isinstance(mt_file, MetapackDoc): doc = mt_file else: doc = MetapackDoc(mt_file) if not 'Resources' in doc: doc.new_section('...

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def hastext(self, cls='current',strict=True, correctionhandling=CorrectionHandling.CURRENT): """See :meth:`AbstractElement.hastext`""" if cls == 'original': correctionhandling = CorrectionHandling.ORIGINAL #backward compatibility if correctionhandling in (CorrectionHandling.CURRENT, CorrectionHa...

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def _numbers_decades(N): """ >>> _numbers_decades(45) ' 1 2 3 4' """ N = N // 10 lst = range(1, N + 1) return "".join(map(lambda i: "%10s" % i, lst))

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def register_lookup(cls, lookup, lookup_name=None): """Register a Lookup to a class""" if lookup_name is None: lookup_name = lookup.lookup_name if 'class_lookups' not in cls.__dict__: cls.class_lookups = {} cls.class_lookups[lookup_name] = lookup cls._cle...

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def get(self, key, cache=None): """Query the server for an item, parse the JSON, and return the result. Keyword arguments: key -- the key of the item that you'd like to retrieve. Required. cache -- the name of the cache that the item resides in. Defaults to None, which ...

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def set_published_date(self, date=None): """ Set the published date of a IOC to the current date. User may specify the date they want to set as well. :param date: Date value to set the published date to. This should be in the xsdDate form. This defaults to the current date if ...

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def _sort_by_region(fnames, regions, ref_file, config): """Sort a set of regionally split files by region for ordered output. """ contig_order = {} for i, sq in enumerate(ref.file_contigs(ref_file, config)): contig_order[sq.name] = i sitems = [] assert len(regions) == len(fnames), (regio...

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40.086957

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def include(context, bundle_name, version): """Include a bundle of files into the internal space. Use bundle name if you simply want to inlcude the latest version. """ store = Store(context.obj['database'], context.obj['root']) if version: version_obj = store.Version.get(version) if...

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def _after_valid_time_range(self): """ In case of uncertainty (times not specified), we assume that we are in a valid range. """ if self.end_time is not None: try: if self.time > self.end_time: return True except TypeError: ...

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def source_present(name, source_type='imgapi'): ''' Ensure an image source is present on the computenode name : string source url source_type : string source type (imgapi or docker) ''' ret = {'name': name, 'changes': {}, 'result': None, 'comment...

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29.25

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def _shift2boolean(self, q_mesh_shift, is_gamma_center=False, tolerance=1e-5): """ Tolerance is used to judge zero/half gird shift. This value is not necessary to be changed usually. """ if q_mesh_shift is None:...

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34.5

15.730769

def require_axis(f): """ Check if the object of the function has axis and sel_axis members """ @wraps(f) def _wrapper(self, *args, **kwargs): if None in (self.axis, self.sel_axis): raise ValueError('%(func_name) requires the node %(node)s ' 'to have an axis and a sel...

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34.769231

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def classify_harmonic(self, partial_labels, use_CMN=True): '''Harmonic function method for semi-supervised classification, also known as the Gaussian Mean Fields algorithm. partial_labels: (n,) array of integer labels, -1 for unlabeled. use_CMN : when True, apply Class Mass Normalization From "Sem...

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def get_pubkey(self): """ Get the public key of the certificate signing request. :return: The public key. :rtype: :py:class:`PKey` """ pkey = PKey.__new__(PKey) pkey._pkey = _lib.X509_REQ_get_pubkey(self._req) _openssl_assert(pkey._pkey != _ffi.NULL) ...

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32.076923

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def connectRelay(self): """Builds the target protocol and connects it to the relay transport. """ self.protocol = self.connector.buildProtocol(None) self.connected = True self.protocol.makeConnection(self)

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40

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def rolling_percentileofscore(series, window, min_periods=None): """Computue the score percentile for the specified window.""" import scipy.stats as stats def _percentile(arr): score = arr[-1] vals = arr[:-1] return stats.percentileofscore(vals, score) notnull = series.dropna()...

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36

21

def _determine_stream_track(self,nTrackChunks): """Determine the track of the stream in real space""" #Determine how much orbital time is necessary for the progenitor's orbit to cover the stream if nTrackChunks is None: #default is floor(self._deltaAngleTrack/0.15)+1 self...

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60.884058

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def to_array(self): """ Serializes this InlineQueryResultGif to a dictionary. :return: dictionary representation of this object. :rtype: dict """ array = super(InlineQueryResultGif, self).to_array() # 'type' and 'id' given by superclass array['gif_url'] =...

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51.214286

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def get_all_build_config_set_records(self, id, **kwargs): """ Get all build config set execution records associated with this build config set, returns empty list if none are found This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, ple...

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45.931034

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def cmd_ip_internal(verbose): """Get the local IP address(es) of the local interfaces. Example: \b $ habu.ip.internal { "lo": { "ipv4": [ { "addr": "127.0.0.1", "netmask": "255.0.0.0", "peer": "127.0.0.1" } ], "l...

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21.093023

23.255814

def python(self, cmd): """Execute a python script using the virtual environment python.""" python_bin = self.cmd_path('python') cmd = '{0} {1}'.format(python_bin, cmd) return self._execute(cmd)

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44.2

7.2

def make_cluster_vector(rev_dict, n_src): """ Converts the cluster membership dictionary to an array Parameters ---------- rev_dict : dict(int:int) A single valued dictionary pointing from source index to cluster key for each source in a cluster. n_src : int Number of ...

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30.458333

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def _prepare_init_params_from_job_description(cls, job_details, model_channel_name=None): """Convert the job description to init params that can be handled by the class constructor Args: job_details: the returned job details from a describe_training_job API call. model_channel_n...

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47.424242

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def user(self, user: str) -> "ChildHTTPAPI": """ Get a child HTTPAPI instance. Args: user: The Matrix ID of the user whose API to get. Returns: A HTTPAPI instance that always uses the given Matrix ID. """ if self.is_real_user: raise V...

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27.947368

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def get_header_path() -> str: """Return local folder path of header files.""" import os return os.path.abspath(os.path.dirname(os.path.realpath(__file__))) + '/headers/'

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44.5

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def _set_module_names_for_sphinx(modules: List, new_name: str): """ Trick sphinx into displaying the desired module in these objects' documentation. """ for obj in modules: obj.__module__ = new_name

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52.75

11.75

def rotate_slaves(self): "Round-robin slave balancer" slaves = self.sentinel_manager.discover_slaves(self.service_name) if slaves: if self.slave_rr_counter is None: self.slave_rr_counter = random.randint(0, len(slaves) - 1) for _ in xrange(len(slaves)): ...

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42.352941

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def ParseJavaFlags(self, start_line=0): """Parse Java style flags (com.google.common.flags).""" # The java flags prints starts with a "Standard flags" "module" # that doesn't follow the standard module syntax. modname = 'Standard flags' # name of current module self.module_list.append(modna...

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35.891304

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def interact_alice(agent: Agent): """ Exchange messages between basic pipelines and the Yandex.Dialogs service. If the pipeline returns multiple values, only the first one is forwarded to Yandex. """ data = request.get_json() text = data['request'].get('command', '').strip() payload = data['...

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33.324324

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def count_alleles(self, max_allele=None, subpop=None): """Count the number of calls of each allele per variant. Parameters ---------- max_allele : int, optional The highest allele index to count. Alleles greater than this index will be ignored. subpop : a...

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28.531915

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def _ixs(self, i, axis=0): """ Return the i-th value or values in the Series by location. Parameters ---------- i : int, slice, or sequence of integers Returns ------- scalar (int) or Series (slice, sequence) """ try: # dispa...

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30.75

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def set_world(self, grd, start_y_x, y_x): """ tell the agent to move to location y,x Why is there another grd object in the agent? Because this is NOT the main grid, rather a copy for the agent to overwrite with planning routes, etc. The real grid is initialised in Worl...

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42.111111

13