kejian/codesearchnet-python-pep8-full · Datasets at Hugging Face

text stringlengths 75 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 0.18
def arbiter(params): '''Obtain the ``arbiter``. It returns the arbiter instance only if we are on the arbiter context domain, otherwise it returns nothing. ''' arbiter = get_actor() if arbiter is None: # Create the arbiter return set_actor(_spawn_actor('arbiter', None, param...	[ "def", "arbiter", "(", "", "", "params", ")", ":", "arbiter", "=", "get_actor", "(", ")", "if", "arbiter", "is", "None", ":", "# Create the arbiter", "return", "set_actor", "(", "_spawn_actor", "(", "'arbiter'", ",", "None", ",", "", "", "params", ")...	30.5	0.002653
def WhereIs(self, prog, path=None, pathext=None, reject=[]): """Find prog in the path. """ if path is None: try: path = self['ENV']['PATH'] except KeyError: pass elif SCons.Util.is_String(path): path = self.subst(path) ...	[ "def", "WhereIs", "(", "self", ",", "prog", ",", "path", "=", "None", ",", "pathext", "=", "None", ",", "reject", "=", "[", "]", ")", ":", "if", "path", "is", "None", ":", "try", ":", "path", "=", "self", "[", "'ENV'", "]", "[", "'PATH'", "]", ...	34.52381	0.006711
def transmit_content_metadata(self, user): """ Transmit content metadata to integrated channel. """ exporter = self.get_content_metadata_exporter(user) transmitter = self.get_content_metadata_transmitter() transmitter.transmit(exporter.export())	[ "def", "transmit_content_metadata", "(", "self", ",", "user", ")", ":", "exporter", "=", "self", ".", "get_content_metadata_exporter", "(", "user", ")", "transmitter", "=", "self", ".", "get_content_metadata_transmitter", "(", ")", "transmitter", ".", "transmit", ...	41	0.006826
def where(self, column, operator=Null(), value=None, boolean="and"): """ Add a where clause to the query :param column: The column of the where clause, can also be a QueryBuilder instance for sub where :type column: str\|Builder :param operator: The operator of the where clause ...	[ "def", "where", "(", "self", ",", "column", ",", "operator", "=", "Null", "(", ")", ",", "value", "=", "None", ",", "boolean", "=", "\"and\"", ")", ":", "if", "isinstance", "(", "column", ",", "Builder", ")", ":", "self", ".", "_query", ".", "add_n...	31.4	0.003708
def find_location(rows, element_to_find): '''Find the location of a piece in the puzzle. Returns a tuple: row, column''' for ir, row in enumerate(rows): for ic, element in enumerate(row): if element == element_to_find: return ir, ic	[ "def", "find_location", "(", "rows", ",", "element_to_find", ")", ":", "for", "ir", ",", "row", "in", "enumerate", "(", "rows", ")", ":", "for", "ic", ",", "element", "in", "enumerate", "(", "row", ")", ":", "if", "element", "==", "element_to_find", ":...	39.571429	0.003534
def gen_slide_seg_list(mm_begin, mm_end, seg_duration, slide_step): """ 生成时间片开始时刻列表,时间片以slide_step步长进行滑动 :param mm_begin: :param mm_end: :param seg_duration: :param slide_step: :return: """ seg_begin_list = [i for i in range(mm_begin, mm_end - seg_duration + 1, ...	[ "def", "gen_slide_seg_list", "(", "mm_begin", ",", "mm_end", ",", "seg_duration", ",", "slide_step", ")", ":", "seg_begin_list", "=", "[", "i", "for", "i", "in", "range", "(", "mm_begin", ",", "mm_end", "-", "seg_duration", "+", "1", ",", "slide_step", ")"...	31.692308	0.002358
def filter_tree(tree): """Filter all 401 errors.""" to_remove = [] for elem in tree.findall('urldata'): valid = elem.find('valid') if valid is not None and valid.text == '0' and \ valid.attrib.get('result', '').startswith('401'): to_remove.append(elem) root = tree....	[ "def", "filter_tree", "(", "tree", ")", ":", "to_remove", "=", "[", "]", "for", "elem", "in", "tree", ".", "findall", "(", "'urldata'", ")", ":", "valid", "=", "elem", ".", "find", "(", "'valid'", ")", "if", "valid", "is", "not", "None", "and", "va...	33.818182	0.002618
def select(read_streams, write_streams, timeout=0): """ Select the streams from `read_streams` that are ready for reading, and streams from `write_streams` ready for writing. Uses `select.select()` internally but only returns two lists of ready streams. """ exception_streams = [] try: ...	[ "def", "select", "(", "read_streams", ",", "write_streams", ",", "timeout", "=", "0", ")", ":", "exception_streams", "=", "[", "]", "try", ":", "return", "builtin_select", ".", "select", "(", "read_streams", ",", "write_streams", ",", "exception_streams", ",",...	27.75	0.002903
def evaluate(self, verbose=False, decode=True, passes=None, num_threads=1, apply_experimental=True): """Evaluates by creating a MultiIndex containing evaluated data and index. See `LazyResult` Returns ------- MultiIndex MultiIndex with evaluated data. """ ...	[ "def", "evaluate", "(", "self", ",", "verbose", "=", "False", ",", "decode", "=", "True", ",", "passes", "=", "None", ",", "num_threads", "=", "1", ",", "apply_experimental", "=", "True", ")", ":", "evaluated_data", "=", "[", "v", ".", "evaluate", "(",...	34.071429	0.010204
def find_carbon_sources(model): """ Find all active carbon source reactions. Parameters ---------- model : Model A genome-scale metabolic model. Returns ------- list The medium reactions with carbon input flux. """ try: model.slim_optimize(error_value=N...	[ "def", "find_carbon_sources", "(", "model", ")", ":", "try", ":", "model", ".", "slim_optimize", "(", "error_value", "=", "None", ")", "except", "OptimizationError", ":", "return", "[", "]", "reactions", "=", "model", ".", "reactions", ".", "get_by_any", "("...	25	0.001481
def print_pixy_blocks(blocks): """ Prints the Pixy blocks data.""" print("Detected " + str(len(blocks)) + " Pixy blocks:") if len(blocks) > 0 and not "signature" in blocks[0]: print("Something went wrong. This does not appear to be a printable block.") board.shutdown() return fo...	[ "def", "print_pixy_blocks", "(", "blocks", ")", ":", "print", "(", "\"Detected \"", "+", "str", "(", "len", "(", "blocks", ")", ")", "+", "\" Pixy blocks:\"", ")", "if", "len", "(", "blocks", ")", ">", "0", "and", "not", "\"signature\"", "in", "blocks", ...	51.545455	0.006932
def stop(self, bIgnoreExceptions = True): """ Stops debugging all processes. If the kill on exit mode is on, debugged processes are killed when the debugger is stopped. Otherwise when the debugger stops it detaches from all debugged processes and leaves them running (default). F...	[ "def", "stop", "(", "self", ",", "bIgnoreExceptions", "=", "True", ")", ":", "# Determine if we have a last debug event that we need to continue.", "try", ":", "event", "=", "self", ".", "lastEvent", "has_event", "=", "bool", "(", "event", ")", "except", "Exception"...	34.214286	0.001353
def _searchable_form(self) -> 'Language': """ Convert a parsed language tag so that the information it contains is in the best form for looking up information in the CLDR. """ if self._searchable is not None: return self._searchable self._searchable = self._f...	[ "def", "_searchable_form", "(", "self", ")", "->", "'Language'", ":", "if", "self", ".", "_searchable", "is", "not", "None", ":", "return", "self", ".", "_searchable", "self", ".", "_searchable", "=", "self", ".", "_filter_attributes", "(", "{", "'language'"...	37.833333	0.004301
def _fake_associatornames(self, namespace, **params): # pylint: disable=invalid-name """ Implements a mock WBEM server responder for :meth:`~pywbem.WBEMConnection.AssociatorNames` """ self._validate_namespace(namespace) rc = None if params['ResultClass'] is None...	[ "def", "_fake_associatornames", "(", "self", ",", "namespace", ",", "", "", "params", ")", ":", "# pylint: disable=invalid-name", "self", ".", "_validate_namespace", "(", "namespace", ")", "rc", "=", "None", "if", "params", "[", "'ResultClass'", "]", "is", "...	40.428571	0.001725
def resp_set_power(self, resp, power_level=None): """Default callback for get_power/set_power """ if power_level is not None: self.power_level=power_level elif resp: self.power_level=resp.power_level	[ "def", "resp_set_power", "(", "self", ",", "resp", ",", "power_level", "=", "None", ")", ":", "if", "power_level", "is", "not", "None", ":", "self", ".", "power_level", "=", "power_level", "elif", "resp", ":", "self", ".", "power_level", "=", "resp", "."...	35.571429	0.015686
def Exp(self, m=None): """Exponentiates the probabilities. m: how much to shift the ps before exponentiating If m is None, normalizes so that the largest prob is 1. """ if not self.log: raise ValueError("Pmf/Hist not under a log transform") self.log = False ...	[ "def", "Exp", "(", "self", ",", "m", "=", "None", ")", ":", "if", "not", "self", ".", "log", ":", "raise", "ValueError", "(", "\"Pmf/Hist not under a log transform\"", ")", "self", ".", "log", "=", "False", "if", "m", "is", "None", ":", "m", "=", "se...	27.5	0.004396
def existing_versions(self): """ Returns data with different cfgstr values that were previously computed with this cacher. Example: >>> from ubelt.util_cache import Cacher >>> # Ensure that some data exists >>> known_fnames = set() >>> cac...	[ "def", "existing_versions", "(", "self", ")", ":", "import", "glob", "pattern", "=", "join", "(", "self", ".", "dpath", ",", "self", ".", "fname", "+", "'_*'", "+", "self", ".", "ext", ")", "for", "fname", "in", "glob", ".", "iglob", "(", "pattern", ...	42.066667	0.001549
def _extract_model_params(self, defaults, **kwargs): """this method allows django managers use `objects.get_or_create` and `objects.update_or_create` on a hashable object. """ obj = kwargs.pop(self.object_property_name, None) if obj is not None: kwargs['object_hash'] ...	[ "def", "_extract_model_params", "(", "self", ",", "defaults", ",", "", "", "kwargs", ")", ":", "obj", "=", "kwargs", ".", "pop", "(", "self", ".", "object_property_name", ",", "None", ")", "if", "obj", "is", "not", "None", ":", "kwargs", "[", "'objec...	46.916667	0.003484
def which(program, path=None): """ Returns the full path of shell commands. Replicates the functionality of system which (1) command. Looks for the named program in the directories indicated in the $PATH environment variable, and returns the full path if found. Examples: >>> system.wh...	[ "def", "which", "(", "program", ",", "path", "=", "None", ")", ":", "# If path is not given, read the $PATH environment variable.", "path", "=", "path", "or", "os", ".", "environ", "[", "\"PATH\"", "]", ".", "split", "(", "os", ".", "pathsep", ")", "abspath", ...	27.6875	0.000727
def update_fit_box(self, new_fit=False): """ alters fit_box lists to match with changes in specimen or new/ removed interpretations Parameters ---------- new_fit : boolean representing if there is a new fit Alters ------ fit_box selection and cho...	[ "def", "update_fit_box", "(", "self", ",", "new_fit", "=", "False", ")", ":", "# get new fit data", "if", "self", ".", "s", "in", "list", "(", "self", ".", "pmag_results_data", "[", "'specimens'", "]", ".", "keys", "(", ")", ")", ":", "self", ".", "fit...	32.25641	0.001543
def import_key(text=None, filename=None, user=None, gnupghome=None): r''' Import a key from text or file text The text containing to import. filename The filename containing the key to import. user Which user's keychain to acces...	[ "def", "import_key", "(", "text", "=", "None", ",", "filename", "=", "None", ",", "user", "=", "None", ",", "gnupghome", "=", "None", ")", ":", "ret", "=", "{", "'res'", ":", "True", ",", "'message'", ":", "''", "}", "gpg", "=", "_create_gpg", "(",...	31.205479	0.000851
def PluginTagToContent(self, plugin_name): """Returns a dict mapping tags to content specific to that plugin. Args: plugin_name: The name of the plugin for which to fetch plugin-specific content. Raises: KeyError: if the plugin name is not found. Returns: A dict mapping tags...	[ "def", "PluginTagToContent", "(", "self", ",", "plugin_name", ")", ":", "if", "plugin_name", "not", "in", "self", ".", "_plugin_to_tag_to_content", ":", "raise", "KeyError", "(", "'Plugin %r could not be found.'", "%", "plugin_name", ")", "with", "self", ".", "_pl...	38.210526	0.00672
def _expected_reads(run_info_file): """Parse the number of expected reads from the RunInfo.xml file. """ reads = [] if os.path.exists(run_info_file): tree = ElementTree() tree.parse(run_info_file) read_elem = tree.find("Run/Reads") reads = read_elem.findall("Read") re...	[ "def", "_expected_reads", "(", "run_info_file", ")", ":", "reads", "=", "[", "]", "if", "os", ".", "path", ".", "exists", "(", "run_info_file", ")", ":", "tree", "=", "ElementTree", "(", ")", "tree", ".", "parse", "(", "run_info_file", ")", "read_elem", ...	32.6	0.002985
def feed_identities(self, msg_list, copy=True): """Split the identities from the rest of the message. Feed until DELIM is reached, then return the prefix as idents and remainder as msg_list. This is easily broken by setting an IDENT to DELIM, but that would be silly. Parameters...	[ "def", "feed_identities", "(", "self", ",", "msg_list", ",", "copy", "=", "True", ")", ":", "if", "copy", ":", "idx", "=", "msg_list", ".", "index", "(", "DELIM", ")", "return", "msg_list", "[", ":", "idx", "]", ",", "msg_list", "[", "idx", "+", "1...	38.583333	0.002809
def _archive_extensions(): """Create translations from file extension to archive format Returns ------- dict The mapping from file extension to archive format dict The mapping from archive format to default file extension """ if six.PY3: ...	[ "def", "_archive_extensions", "(", ")", ":", "if", "six", ".", "PY3", ":", "ext_map", "=", "{", "}", "fmt_map", "=", "{", "}", "for", "key", ",", "exts", ",", "desc", "in", "shutil", ".", "get_unpack_formats", "(", ")", ":", "fmt_map", "[", "key", ...	34.09375	0.001783
def run_filter_radia(job, bams, radia_file, univ_options, radia_options, chrom): """ Run filterradia on the RADIA output. :param dict bams: Dict of bam and bai for tumor DNA-Seq, normal DNA-Seq and tumor RNA-Seq :param toil.fileStore.FileID radia_file: The vcf from runnning RADIA :param dict univ_o...	[ "def", "run_filter_radia", "(", "job", ",", "bams", ",", "radia_file", ",", "univ_options", ",", "radia_options", ",", "chrom", ")", ":", "work_dir", "=", "os", ".", "getcwd", "(", ")", "input_files", "=", "{", "'rna.bam'", ":", "bams", "[", "'tumor_rna'",...	48.272727	0.003076
def _mb_model(self, beta, mini_batch): """ Creates the structure of the model (model matrices etc) for mini batch model Parameters ---------- beta : np.ndarray Contains untransformed starting values for the latent variables mini_batch : int Mini batch si...	[ "def", "_mb_model", "(", "self", ",", "beta", ",", "mini_batch", ")", ":", "Y", "=", "np", ".", "array", "(", "self", ".", "data", "[", "self", ".", "max_lag", ":", "]", ")", "sample", "=", "np", ".", "random", ".", "choice", "(", "len", "(", "...	31.806452	0.005906
def list_nodes(): ''' List virtual machines .. code-block:: bash salt-cloud -Q ''' session = _get_session() vms = session.xenapi.VM.get_all_records() ret = {} for vm in vms: record = session.xenapi.VM.get_record(vm) if not record['is_a_template'] and not re...	[ "def", "list_nodes", "(", ")", ":", "session", "=", "_get_session", "(", ")", "vms", "=", "session", ".", "xenapi", ".", "VM", ".", "get_all_records", "(", ")", "ret", "=", "{", "}", "for", "vm", "in", "vms", ":", "record", "=", "session", ".", "xe...	37.870968	0.002492
def getModule(self, moduleName): """ Retrieve a JavaScript module cache from the file path cache. @returns: Module cache for the named module. @rtype: L{CachedJSModule} """ if moduleName not in self.moduleCache: modulePath = FilePath( athena.j...	[ "def", "getModule", "(", "self", ",", "moduleName", ")", ":", "if", "moduleName", "not", "in", "self", ".", "moduleCache", ":", "modulePath", "=", "FilePath", "(", "athena", ".", "jsDeps", ".", "getModuleForName", "(", "moduleName", ")", ".", "_cache", "."...	37.666667	0.003454
def _get_list_prefix(self, param_prefix): """ Given a query dict like { 'Steps.member.1.Name': ['example1'], 'Steps.member.1.ActionOnFailure': ['TERMINATE_JOB_FLOW'], 'Steps.member.1.HadoopJarStep.Jar': ['streaming1.jar'], 'Steps.member.2.Name': ['...	[ "def", "_get_list_prefix", "(", "self", ",", "param_prefix", ")", ":", "results", "=", "[", "]", "param_index", "=", "1", "while", "True", ":", "index_prefix", "=", "\"{0}.{1}.\"", ".", "format", "(", "param_prefix", ",", "param_index", ")", "new_items", "="...	35.918919	0.001465
def c_source(self): """Return strings.""" relocs = Relocs( ''.join(self.c_self_relocs()), *self.c_module_relocs() ) return Source( ''.join(self.c_typedefs()), '' if self.opts.no_structs else self.c_struct(), ''.join(self.c_hashes()), ...	[ "def", "c_source", "(", "self", ")", ":", "relocs", "=", "Relocs", "(", "''", ".", "join", "(", "self", ".", "c_self_relocs", "(", ")", ")", ",", "*", "self", ".", "c_module_relocs", "(", ")", ")", "return", "Source", "(", "''", ".", "join", "(", ...	33.076923	0.004525
def run_steps(spec, language="en"): """ Can be called by the user from within a step definition to execute other steps. """ # The way this works is a little exotic, but I couldn't think of a better way to work around # the fact that this has to be a global function and therefore cannot know about which ste...	[ "def", "run_steps", "(", "spec", ",", "language", "=", "\"en\"", ")", ":", "# The way this works is a little exotic, but I couldn't think of a better way to work around", "# the fact that this has to be a global function and therefore cannot know about which step", "# runner to use (other th...	47.866667	0.008197
def _get_popularity_baseline(self): """ Returns a new popularity model matching the data set this model was trained with. Can be used for comparison purposes. """ response = self.__proxy__.get_popularity_baseline() from .popularity_recommender import PopularityRecommen...	[ "def", "_get_popularity_baseline", "(", "self", ")", ":", "response", "=", "self", ".", "__proxy__", ".", "get_popularity_baseline", "(", ")", "from", ".", "popularity_recommender", "import", "PopularityRecommender", "return", "PopularityRecommender", "(", "response", ...	36.1	0.005405
def get_rst_relation_root_nodes(docgraph, data=True, rst_namespace='rst'): """ yield all nodes that dominate one or more RST relations in the given document graph (in no particular order). Parameters ---------- docgraph : DiscourseDocumentGraph a document graph which contains RST annota...	[ "def", "get_rst_relation_root_nodes", "(", "docgraph", ",", "data", "=", "True", ",", "rst_namespace", "=", "'rst'", ")", ":", "rel_attr", "=", "rst_namespace", "+", "':rel_name'", "for", "node_id", ",", "node_attrs", "in", "docgraph", ".", "nodes_iter", "(", ...	41.035714	0.001701
def meco_velocity(m1, m2, chi1, chi2): """ Returns the velocity of the minimum energy cutoff for 3.5pN (2.5pN spin) Parameters ---------- m1 : float First component mass in solar masses m2 : float Second component mass in solar masses chi1 : float First component dim...	[ "def", "meco_velocity", "(", "m1", ",", "m2", ",", "chi1", ",", "chi2", ")", ":", "_", ",", "energy2", ",", "energy3", ",", "energy4", ",", "energy5", ",", "energy6", "=", "_energy_coeffs", "(", "m1", ",", "m2", ",", "chi1", ",", "chi2", ")", "def"...	29.888889	0.006002
async def sleep_async(self, seconds): """Lock the connection for a given number of seconds. :param seconds: Length of time to lock the connection. :type seconds: int """ try: await self.lock_async() await asyncio.sleep(seconds) except asyncio.Time...	[ "async", "def", "sleep_async", "(", "self", ",", "seconds", ")", ":", "try", ":", "await", "self", ".", "lock_async", "(", ")", "await", "asyncio", ".", "sleep", "(", "seconds", ")", "except", "asyncio", ".", "TimeoutError", ":", "_logger", ".", "debug",...	36.538462	0.00616
def IsEnabled(self, args, *kwargs): "check if all top menus are enabled" for i in range(self.GetMenuCount()): if not self.IsEnabledTop(i): return False return True	[ "def", "IsEnabled", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "for", "i", "in", "range", "(", "self", ".", "GetMenuCount", "(", ")", ")", ":", "if", "not", "self", ".", "IsEnabledTop", "(", "i", ")", ":", "return", "False"...	36.166667	0.009009
def experiments_predictions_image_set_create(self, experiment_id, run_id, filename): """Create a prediction image set from a given tar archive that was produced as the result of a successful model run. Returns None if the specified model run does not exist or did not finish successfully...	[ "def", "experiments_predictions_image_set_create", "(", "self", ",", "experiment_id", ",", "run_id", ",", "filename", ")", ":", "# Ensure that the model run exists and is in state SUCCESS", "model_run", "=", "self", ".", "experiments_predictions_get", "(", "experiment_id", ",...	41.125	0.00212
def createTable(dbconn, pd): """Creates a database table for the given PacketDefinition.""" cols = ('%s %s' % (defn.name, getTypename(defn)) for defn in pd.fields) sql = 'CREATE TABLE IF NOT EXISTS %s (%s)' % (pd.name, ', '.join(cols)) dbconn.execute(sql) dbconn.commit()	[ "def", "createTable", "(", "dbconn", ",", "pd", ")", ":", "cols", "=", "(", "'%s %s'", "%", "(", "defn", ".", "name", ",", "getTypename", "(", "defn", ")", ")", "for", "defn", "in", "pd", ".", "fields", ")", "sql", "=", "'CREATE TABLE IF NOT EXISTS %s ...	41	0.006826
async def request( self, method: str, endpoint: str, *, base_url: str = API_URL_SCAFFOLD, headers: dict = None, params: dict = None, json: dict = None) -> dict: """Make a request against AirVisual.""" if not ...	[ "async", "def", "request", "(", "self", ",", "method", ":", "str", ",", "endpoint", ":", "str", ",", "*", ",", "base_url", ":", "str", "=", "API_URL_SCAFFOLD", ",", "headers", ":", "dict", "=", "None", ",", "params", ":", "dict", "=", "None", ",", ...	31.884615	0.002342
def unpack_bytes(self, obj_bytes, encoding=None): """Unpack a byte stream into a dictionary.""" assert self.bytes_to_dict or self.string_to_dict encoding = encoding or self.default_encoding LOGGER.debug('%r decoding %d bytes with encoding of %s', self, len(obj_bytes)...	[ "def", "unpack_bytes", "(", "self", ",", "obj_bytes", ",", "encoding", "=", "None", ")", ":", "assert", "self", ".", "bytes_to_dict", "or", "self", ".", "string_to_dict", "encoding", "=", "encoding", "or", "self", ".", "default_encoding", "LOGGER", ".", "deb...	54.666667	0.004
def json2value(json_string, params=Null, flexible=False, leaves=False): """ :param json_string: THE JSON :param params: STANDARD JSON PARAMS :param flexible: REMOVE COMMENTS :param leaves: ASSUME JSON KEYS ARE DOT-DELIMITED :return: Python value """ if not is_text(json_string): L...	[ "def", "json2value", "(", "json_string", ",", "params", "=", "Null", ",", "flexible", "=", "False", ",", "leaves", "=", "False", ")", ":", "if", "not", "is_text", "(", "json_string", ")", ":", "Log", ".", "error", "(", "\"only unicode json accepted\"", ")"...	38.971014	0.003627
def _from_dict(cls, _dict): """Initialize a KeywordsResult object from a json dictionary.""" args = {} if 'count' in _dict: args['count'] = _dict.get('count') if 'relevance' in _dict: args['relevance'] = _dict.get('relevance') if 'text' in _dict: ...	[ "def", "_from_dict", "(", "cls", ",", "_dict", ")", ":", "args", "=", "{", "}", "if", "'count'", "in", "_dict", ":", "args", "[", "'count'", "]", "=", "_dict", ".", "get", "(", "'count'", ")", "if", "'relevance'", "in", "_dict", ":", "args", "[", ...	41.133333	0.00317
def supported_versions(django, cms): """ Convert numeric and literal version information to numeric format """ cms_version = None django_version = None try: cms_version = Decimal(cms) except (ValueError, InvalidOperation): try: cms_version = CMS_VERSION_MATRIX[st...	[ "def", "supported_versions", "(", "django", ",", "cms", ")", ":", "cms_version", "=", "None", "django_version", "=", "None", "try", ":", "cms_version", "=", "Decimal", "(", "cms", ")", "except", "(", "ValueError", ",", "InvalidOperation", ")", ":", "try", ...	34.325581	0.003294
def analyzeParameters(expName, suite): """ Analyze the impact of each list parameter in this experiment """ print("\n================",expName,"=====================") try: expParams = suite.get_params(expName) pprint.pprint(expParams) for p in ["boost_strength", "k", "learning_rate", "weight_spa...	[ "def", "analyzeParameters", "(", "expName", ",", "suite", ")", ":", "print", "(", "\"\\n================\"", ",", "expName", ",", "\"=====================\"", ")", "try", ":", "expParams", "=", "suite", ".", "get_params", "(", "expName", ")", "pprint", ".", "p...	37.125	0.017227
def _add_node(self, node, depth): """Add a node to the graph, and the stack.""" self._topmost_node.add_child(node, bool(depth[1])) self._stack.append((depth, node))	[ "def", "_add_node", "(", "self", ",", "node", ",", "depth", ")", ":", "self", ".", "_topmost_node", ".", "add_child", "(", "node", ",", "bool", "(", "depth", "[", "1", "]", ")", ")", "self", ".", "_stack", ".", "append", "(", "(", "depth", ",", "...	46.25	0.010638
def ekgi(selidx, row, element): """ Return an element of an entry in a column of integer type in a specified row. http://naif.jpl.nasa.gov/pub/naif/toolkit_docs/C/cspice/ekgi_c.html :param selidx: Index of parent column in SELECT clause. :type selidx: int :param row: Row to fetch from. ...	[ "def", "ekgi", "(", "selidx", ",", "row", ",", "element", ")", ":", "selidx", "=", "ctypes", ".", "c_int", "(", "selidx", ")", "row", "=", "ctypes", ".", "c_int", "(", "row", ")", "element", "=", "ctypes", ".", "c_int", "(", "element", ")", "idata"...	33.333333	0.00108
def split_by_extensions(filename): """ Splits the filename string by the extension of the file """ parts = filename.split('.') idx = len(parts) - 1 while FileFormat.is_file_format(parts[idx]): parts[idx] = FileFormat(parts[idx]) idx -= 1 return ['....	[ "def", "split_by_extensions", "(", "filename", ")", ":", "parts", "=", "filename", ".", "split", "(", "'.'", ")", "idx", "=", "len", "(", "parts", ")", "-", "1", "while", "FileFormat", ".", "is_file_format", "(", "parts", "[", "idx", "]", ")", ":", "...	39.333333	0.005525
def reproduce(past_analysis, plotting=False, data_folder=None, srm_table=None, custom_stat_functions=None): """ Reproduce a previous analysis exported with :func:`latools.analyse.minimal_export` For normal use, supplying `log_file` and specifying a plotting option should be enough to repr...	[ "def", "reproduce", "(", "past_analysis", ",", "plotting", "=", "False", ",", "data_folder", "=", "None", ",", "srm_table", "=", "None", ",", "custom_stat_functions", "=", "None", ")", ":", "if", "'.zip'", "in", "past_analysis", ":", "dirpath", "=", "utils",...	40.310811	0.003927
def birth(self): ''' Create the individual (compute the spline curve) ''' spline = scipy.interpolate.splrep(self.x, self.y) self.y_int = scipy.interpolate.splev(self.x_int,spline)	[ "def", "birth", "(", "self", ")", ":", "spline", "=", "scipy", ".", "interpolate", ".", "splrep", "(", "self", ".", "x", ",", "self", ".", "y", ")", "self", ".", "y_int", "=", "scipy", ".", "interpolate", ".", "splev", "(", "self", ".", "x_int", ...	30.666667	0.042328
def wrap_text(translations, linewrap=0): """Pretty print translations. If linewrap is set to 0 disble line wrapping. Parameters ---------- translations : list List of word translations. linewrap : int Maximum line length before wrapping. """ # pylint: disable=too-many-l...	[ "def", "wrap_text", "(", "translations", ",", "linewrap", "=", "0", ")", ":", "# pylint: disable=too-many-locals", "def", "wrap", "(", "text", ",", "width", "=", "linewrap", ",", "findent", "=", "0", ",", "sindent", "=", "0", ",", "bold", "=", "False", "...	33.836364	0.001044
def init(library: typing.Union[str, types.ModuleType]) -> None: ''' Must be called at some point after import and before your event loop is run. Populates the asynclib instance of _AsyncLib with methods relevant to the async library you are using. The supported libraries at the moment are: ...	[ "def", "init", "(", "library", ":", "typing", ".", "Union", "[", "str", ",", "types", ".", "ModuleType", "]", ")", "->", "None", ":", "if", "isinstance", "(", "library", ",", "types", ".", "ModuleType", ")", ":", "library", "=", "library", ".", "__na...	34.076923	0.003293
def update(cls,table, dic, Id): """ Update row with Id from table. Set fields given by dic.""" if dic: req = "UPDATE {table} SET {SET} WHERE id = " + cls.named_style.format('__id') + " RETURNING * " r = abstractRequetesSQL.formate(req, SET=dic, table=table, args=dict(dic, __id=I...	[ "def", "update", "(", "cls", ",", "table", ",", "dic", ",", "Id", ")", ":", "if", "dic", ":", "req", "=", "\"UPDATE {table} SET {SET} WHERE id = \"", "+", "cls", ".", "named_style", ".", "format", "(", "'__id'", ")", "+", "\" RETURNING * \"", "r", "=", "...	62.25	0.013861
def single_gate_params(gate, params=None): """Apply a single qubit gate to the qubit. Args: gate(str): the single qubit gate name params(list): the operation parameters op['params'] Returns: tuple: a tuple of U gate parameters (theta, phi, lam) Raises: QiskitError: if th...	[ "def", "single_gate_params", "(", "gate", ",", "params", "=", "None", ")", ":", "if", "gate", "in", "(", "'U'", ",", "'u3'", ")", ":", "return", "params", "[", "0", "]", ",", "params", "[", "1", "]", ",", "params", "[", "2", "]", "elif", "gate", ...	32.4	0.001499
def decode(self, session_data): """decodes the data to get back the session dict """ pickled = decodebytes(utf8(session_data)) return pickle.loads(pickled)	[ "def", "decode", "(", "self", ",", "session_data", ")", ":", "pickled", "=", "decodebytes", "(", "utf8", "(", "session_data", ")", ")", "return", "pickle", ".", "loads", "(", "pickled", ")" ]	44	0.011173
def move_to(self, location): """Changes the location of this medium. Some medium types may support changing the storage unit location by simply changing the value of the associated property. In this case the operation is performed immediately, and @a progress is returning a @c null refer...	[ "def", "move_to", "(", "self", ",", "location", ")", ":", "if", "not", "isinstance", "(", "location", ",", "basestring", ")", ":", "raise", "TypeError", "(", "\"location can only be an instance of type basestring\"", ")", "progress", "=", "self", ".", "_call", "...	49.102564	0.003584
def reset(self): """ Resets state and uid set. To be called asap to free memory """ self.reached_limit = False self.count = 0 self.seen.clear()	[ "def", "reset", "(", "self", ")", ":", "self", ".", "reached_limit", "=", "False", "self", ".", "count", "=", "0", "self", ".", "seen", ".", "clear", "(", ")" ]	26.428571	0.010471
def gen_stack_patches(patch_list, nr_row=None, nr_col=None, border=None, max_width=1000, max_height=1000, bgcolor=255, viz=False, lclick_cb=None): """ Similar to :func:`stack_patches` but with a generator interface. It takes a much-longer lis...	[ "def", "gen_stack_patches", "(", "patch_list", ",", "nr_row", "=", "None", ",", "nr_col", "=", "None", ",", "border", "=", "None", ",", "max_width", "=", "1000", ",", "max_height", "=", "1000", ",", "bgcolor", "=", "255", ",", "viz", "=", "False", ",",...	34.421053	0.001487
def _gen_new_subtoken_list( subtoken_counts, min_count, alphabet, reserved_tokens=None): """Generate candidate subtokens ordered by count, and new max subtoken length. Add subtokens to the candiate list in order of length (longest subtokens first). When a subtoken is added, the counts of each of its prefixes...	[ "def", "_gen_new_subtoken_list", "(", "subtoken_counts", ",", "min_count", ",", "alphabet", ",", "reserved_tokens", "=", "None", ")", ":", "if", "reserved_tokens", "is", "None", ":", "reserved_tokens", "=", "RESERVED_TOKENS", "# Create a list of (count, subtoken) for each...	41.171429	0.010166
def compute_score(attr, mcmap, NN, feature, inst, nan_entries, headers, class_type, X, y, labels_std, data_type, near=True): """Flexible feature scoring method that can be used with any core Relief-based method. Scoring proceeds differently based on whether endpoint is binary, multiclass, or continuous. This ...	[ "def", "compute_score", "(", "attr", ",", "mcmap", ",", "NN", ",", "feature", ",", "inst", ",", "nan_entries", ",", "headers", ",", "class_type", ",", "X", ",", "y", ",", "labels_std", ",", "data_type", ",", "near", "=", "True", ")", ":", "fname", "=...	63.67364	0.008023
def delete_lambda_deprecated(awsclient, function_name, s3_event_sources=[], time_event_sources=[], delete_logs=False): # FIXME: mutable default arguments! """Deprecated: please use delete_lambda! :param awsclient: :param function_name: :param s3_event_sources: :para...	[ "def", "delete_lambda_deprecated", "(", "awsclient", ",", "function_name", ",", "s3_event_sources", "=", "[", "]", ",", "time_event_sources", "=", "[", "]", ",", "delete_logs", "=", "False", ")", ":", "# FIXME: mutable default arguments!", "unwire_deprecated", "(", ...	39.166667	0.002077
def save(filepath, obj, compressed=True): """ Save the object to a .npz file. Parameters ---------- filepath : str The path to save the file. obj: `pypianoroll.Multitrack` objects The object to be saved. """ if not isinstance(obj, Multitrack): raise TypeError("S...	[ "def", "save", "(", "filepath", ",", "obj", ",", "compressed", "=", "True", ")", ":", "if", "not", "isinstance", "(", "obj", ",", "Multitrack", ")", ":", "raise", "TypeError", "(", "\"Support only `pypianoroll.Multitrack` class objects\"", ")", "obj", ".", "sa...	26.2	0.002457
def unmount(self, remove_rw=False, allow_lazy=False): """Removes all ties of this disk to the filesystem, so the image can be unmounted successfully. :raises SubsystemError: when one of the underlying commands fails. Some are swallowed. :raises CleanupError: when actual cleanup fails. Some are ...	[ "def", "unmount", "(", "self", ",", "remove_rw", "=", "False", ",", "allow_lazy", "=", "False", ")", ":", "for", "m", "in", "list", "(", "sorted", "(", "self", ".", "volumes", ",", "key", "=", "lambda", "v", ":", "v", ".", "mountpoint", "or", "\"\"...	39.527778	0.004801
def get_stats_summary_dict(self): """Returns basic stats. Returns a `dict` with various counts and stats, see below. """ uptime = time.time() - self._established_time \ if self._established_time != 0 else -1 return { stats.UPDATE_MSG_IN: self.get_count(Pe...	[ "def", "get_stats_summary_dict", "(", "self", ")", ":", "uptime", "=", "time", ".", "time", "(", ")", "-", "self", ".", "_established_time", "if", "self", ".", "_established_time", "!=", "0", "else", "-", "1", "return", "{", "stats", ".", "UPDATE_MSG_IN", ...	37.368421	0.002747
def get_reposts(self): """ https://vk.com/dev/wall.getReposts """ return self._session.fetch_items('wall.getReposts', self.from_json, count=1000, owner_id=self.from_id, post_id=self.id)	[ "def", "get_reposts", "(", "self", ")", ":", "return", "self", ".", "_session", ".", "fetch_items", "(", "'wall.getReposts'", ",", "self", ".", "from_json", ",", "count", "=", "1000", ",", "owner_id", "=", "self", ".", "from_id", ",", "post_id", "=", "se...	42.6	0.013825
def getObjDebugName(self, obj: Union[Interface, Unit, Param]) -> str: """ :see: doc of method on parent class """ return obj._getFullName()	[ "def", "getObjDebugName", "(", "self", ",", "obj", ":", "Union", "[", "Interface", ",", "Unit", ",", "Param", "]", ")", "->", "str", ":", "return", "obj", ".", "_getFullName", "(", ")" ]	33.4	0.011696
def list_job_ids(self, skip=0, limit=20): """ Returns a list of job ids on a queue """ return [str(x["_id"]) for x in self.collection.find( {"status": "queued"}, sort=[("_id", -1 if self.is_reverse else 1)], projection={"_id": 1}) ]	[ "def", "list_job_ids", "(", "self", ",", "skip", "=", "0", ",", "limit", "=", "20", ")", ":", "return", "[", "str", "(", "x", "[", "\"_id\"", "]", ")", "for", "x", "in", "self", ".", "collection", ".", "find", "(", "{", "\"status\"", ":", "\"queu...	35.75	0.006826
def create_child(self, nurest_object, response_choice=None, async=False, callback=None, commit=True): """ Add given nurest_object to the current object For example, to add a child into a parent, you can call parent.create_child(nurest_object=child) Args: nur...	[ "def", "create_child", "(", "self", ",", "nurest_object", ",", "response_choice", "=", "None", ",", "async", "=", "False", ",", "callback", "=", "None", ",", "commit", "=", "True", ")", ":", "# if nurest_object.id:", "# raise InternalConsitencyError(\"Cannot cre...	50.633333	0.007106
def server_hardreset(host=None, admin_username=None, admin_password=None, module=None): ''' Performs a reset (reboot) operation on the managed server. host The chassis host. admin_username The username used to access the ch...	[ "def", "server_hardreset", "(", "host", "=", "None", ",", "admin_username", "=", "None", ",", "admin_password", "=", "None", ",", "module", "=", "None", ")", ":", "return", "__execute_cmd", "(", "'serveraction hardreset'", ",", "host", "=", "host", ",", "adm...	27.625	0.001093
def _filter_cache(self, dmap, kdims): """ Returns a filtered version of the DynamicMap cache leaving only keys consistently with the newly specified values """ filtered = [] for key, value in dmap.data.items(): if not any(kd.values and v not in kd.values for k...	[ "def", "_filter_cache", "(", "self", ",", "dmap", ",", "kdims", ")", ":", "filtered", "=", "[", "]", "for", "key", ",", "value", "in", "dmap", ".", "data", ".", "items", "(", ")", ":", "if", "not", "any", "(", "kd", ".", "values", "and", "v", "...	40.6	0.007229
def column_or_1d(y, warn=False): """ Ravel column or 1d numpy array, else raises an error Parameters ---------- y : array-like Returns ------- y : array """ shape = np.shape(y) if len(shape) == 1: return np.ravel(y) if len(shape) == 2 and shape[1] == 1: if ...	[ "def", "column_or_1d", "(", "y", ",", "warn", "=", "False", ")", ":", "shape", "=", "np", ".", "shape", "(", "y", ")", "if", "len", "(", "shape", ")", "==", "1", ":", "return", "np", ".", "ravel", "(", "y", ")", "if", "len", "(", "shape", ")"...	27.958333	0.001441
def check_complete(self): """ Runs completion flow for this task if it's finished. """ logger.debug('Running check_complete for task {0}'.format(self.name)) # Tasks not completed if self.remote_not_complete() or self.local_not_complete(): self._start_check_timer() ...	[ "def", "check_complete", "(", "self", ")", ":", "logger", ".", "debug", "(", "'Running check_complete for task {0}'", ".", "format", "(", "self", ".", "name", ")", ")", "# Tasks not completed", "if", "self", ".", "remote_not_complete", "(", ")", "or", "self", ...	38.482759	0.001748
def get_mix_gen(self, sample): """Returns function that returns sequence of characters of a given length from a given sample """ def mix(length): result = "".join(random.choice(sample) for _ in xrange(length)).strip() if len(result) == length: retu...	[ "def", "get_mix_gen", "(", "self", ",", "sample", ")", ":", "def", "mix", "(", "length", ")", ":", "result", "=", "\"\"", ".", "join", "(", "random", ".", "choice", "(", "sample", ")", "for", "_", "in", "xrange", "(", "length", ")", ")", ".", "st...	37	0.007916
def add(self, source_id=None, file_path=None, profile_reference="", timestamp_reception=None, training_metadata=[]): """ Add a profile resume to a sourced id. Args: source_id: <string> source id file_path: ...	[ "def", "add", "(", "self", ",", "source_id", "=", "None", ",", "file_path", "=", "None", ",", "profile_reference", "=", "\"\"", ",", "timestamp_reception", "=", "None", ",", "training_metadata", "=", "[", "]", ")", ":", "data", "=", "{", "}", "data", "...	45.387097	0.005567
def create_temporary_table(from_table, name=None, on_commit=None): """ Create a new temporary table from another table. """ from_table = from_table.__table__ if hasattr(from_table, "__table__") else from_table name = name or f"temporary_{from_table.name}" # copy the origin table into the meta...	[ "def", "create_temporary_table", "(", "from_table", ",", "name", "=", "None", ",", "on_commit", "=", "None", ")", ":", "from_table", "=", "from_table", ".", "__table__", "if", "hasattr", "(", "from_table", ",", "\"__table__\"", ")", "else", "from_table", "name...	35.592593	0.002026
def include(self, pattern): """Include files that match 'pattern'.""" found = [f for f in glob(pattern) if not os.path.isdir(f)] self.extend(found) return bool(found)	[ "def", "include", "(", "self", ",", "pattern", ")", ":", "found", "=", "[", "f", "for", "f", "in", "glob", "(", "pattern", ")", "if", "not", "os", ".", "path", ".", "isdir", "(", "f", ")", "]", "self", ".", "extend", "(", "found", ")", "return"...	38.8	0.010101
def disassociate_success_node(self, parent, child): """Remove success node. The resulatant 2 nodes will both become root nodes. =====API DOCS===== Remove success node. :param parent: Primary key of parent node to disassociate success node from. :type parent: int ...	[ "def", "disassociate_success_node", "(", "self", ",", "parent", ",", "child", ")", ":", "return", "self", ".", "_disassoc", "(", "self", ".", "_forward_rel_name", "(", "'success'", ")", ",", "parent", ",", "child", ")" ]	36.277778	0.00597
def cbk_qptdm_workflow(self, cbk): """ This callback is executed by the flow when bands_work.nscf_task reaches S_OK. It computes the list of q-points for the W(q,G,G'), creates nqpt tasks in the second work (QptdmWork), and connect the signals. """ scr_input = cbk.data["...	[ "def", "cbk_qptdm_workflow", "(", "self", ",", "cbk", ")", ":", "scr_input", "=", "cbk", ".", "data", "[", "\"input\"", "]", "# Use the WFK file produced by the second", "# Task in the first Work (NSCF step).", "nscf_task", "=", "self", "[", "0", "]", "[", "1", "]...	32.068966	0.004175
def LoadChecksFromFiles(file_paths, overwrite_if_exists=True): """Load the checks defined in the specified files.""" loaded = [] for file_path in file_paths: configs = LoadConfigsFromFile(file_path) for conf in itervalues(configs): check = Check(**conf) # Validate will raise if the check doesn...	[ "def", "LoadChecksFromFiles", "(", "file_paths", ",", "overwrite_if_exists", "=", "True", ")", ":", "loaded", "=", "[", "]", "for", "file_path", "in", "file_paths", ":", "configs", "=", "LoadConfigsFromFile", "(", "file_path", ")", "for", "conf", "in", "iterva...	37.25	0.018003
def parse(self, argv): """Pop, parse and return the first self.nargs items from args. if self.nargs > 1 a list of parsed values will be returned. Raise BadNumberOfArguments or BadArgument on errors. NOTE: argv may be modified in place by this method. """ ...	[ "def", "parse", "(", "self", ",", "argv", ")", ":", "if", "len", "(", "argv", ")", "<", "self", ".", "nargs", ":", "raise", "BadNumberOfArguments", "(", "self", ".", "nargs", ",", "len", "(", "argv", ")", ")", "if", "self", ".", "nargs", "==", "1...	39.785714	0.007018
def evaluate_at(self, eval_at, testcases, mode=None): """ Sets the evaluation interation indices. :param list eval_at: iteration indices where an evaluation should be performed :param numpy.array testcases: testcases used for evaluation """ self.eval_at = eval_at ...	[ "def", "evaluate_at", "(", "self", ",", "eval_at", ",", "testcases", ",", "mode", "=", "None", ")", ":", "self", ".", "eval_at", "=", "eval_at", "self", ".", "log", ".", "eval_at", "=", "eval_at", "if", "mode", "is", "None", ":", "if", "self", ".", ...	37.25	0.009162
def makedirs(name): """helper function for python 2 and 3 to call os.makedirs() avoiding an error if the directory to be created already exists""" import os, errno try: os.makedirs(name) except OSError as ex: if ex.errno == errno.EEXIST and os.path.isdir(name): # ign...	[ "def", "makedirs", "(", "name", ")", ":", "import", "os", ",", "errno", "try", ":", "os", ".", "makedirs", "(", "name", ")", "except", "OSError", "as", "ex", ":", "if", "ex", ".", "errno", "==", "errno", ".", "EEXIST", "and", "os", ".", "path", "...	27.866667	0.00463
def get(name, function=None): """Get a setting. `name` should be the name of the setting to look for. If the optional argument `function` is passed, this will look for a value local to the function before retrieving the global value. """ if function is not None:...	[ "def", "get", "(", "name", ",", "function", "=", "None", ")", ":", "if", "function", "is", "not", "None", ":", "if", "hasattr", "(", "function", ",", "Settings", ".", "FUNCTION_SETTINGS_NAME", ")", ":", "if", "name", "in", "getattr", "(", "function", "...	45.538462	0.004967
def get_fields(model, fields=None): """ Assigns fields for model. """ include = [f.strip() for f in fields.split(',')] if fields else None return utils.get_fields( model, include )	[ "def", "get_fields", "(", "model", ",", "fields", "=", "None", ")", ":", "include", "=", "[", "f", ".", "strip", "(", ")", "for", "f", "in", "fields", ".", "split", "(", "','", ")", "]", "if", "fields", "else", "None", "return", "utils", ".", "ge...	23.555556	0.004545
def register(model): """ Register the given model class and wrapped AlgoliaIndex class with the Algolia engine: @register(Author) class AuthorIndex(AlgoliaIndex): pass """ from algoliasearch_django import AlgoliaIndex, register def _algolia_engine_wrapper(index_class): if ...	[ "def", "register", "(", "model", ")", ":", "from", "algoliasearch_django", "import", "AlgoliaIndex", ",", "register", "def", "_algolia_engine_wrapper", "(", "index_class", ")", ":", "if", "not", "issubclass", "(", "index_class", ",", "AlgoliaIndex", ")", ":", "r...	27.315789	0.003724
def send_command(self, cmd, priority=False): """ Flushes a command to the server as a bytes payload. """ if priority: self._pending.insert(0, cmd) else: self._pending.append(cmd) self._pending_size += len(cmd) if self._pending_size > DEFAU...	[ "def", "send_command", "(", "self", ",", "cmd", ",", "priority", "=", "False", ")", ":", "if", "priority", ":", "self", ".", "_pending", ".", "insert", "(", "0", ",", "cmd", ")", "else", ":", "self", ".", "_pending", ".", "append", "(", "cmd", ")",...	30.416667	0.005319
def as_srec(self, number_of_data_bytes=32, address_length_bits=32): """Format the binary file as Motorola S-Records records and return them as a string. `number_of_data_bytes` is the number of data bytes in each record. `address_length_bits` is the number of address bits in eac...	[ "def", "as_srec", "(", "self", ",", "number_of_data_bytes", "=", "32", ",", "address_length_bits", "=", "32", ")", ":", "header", "=", "[", "]", "if", "self", ".", "_header", "is", "not", "None", ":", "record", "=", "pack_srec", "(", "'0'", ",", "0", ...	35.942308	0.001563
def _generate_iam_invoke_role_policy(self): """ Generate the policy for the IAM role used by API Gateway to invoke the lambda function. Terraform name: aws_iam_role.invoke_role """ invoke_pol = { "Version": "2012-10-17", "Statement": [ ...	[ "def", "_generate_iam_invoke_role_policy", "(", "self", ")", ":", "invoke_pol", "=", "{", "\"Version\"", ":", "\"2012-10-17\"", ",", "\"Statement\"", ":", "[", "{", "\"Effect\"", ":", "\"Allow\"", ",", "\"Resource\"", ":", "[", "\"*\"", "]", ",", "\"Action\"", ...	32.681818	0.002703
def islink(path): ''' Equivalent to os.path.islink() ''' if six.PY3 or not salt.utils.platform.is_windows(): return os.path.islink(path) if not HAS_WIN32FILE: log.error('Cannot check if %s is a link, missing required modules', path) if not _is_reparse_point(path): retur...	[ "def", "islink", "(", "path", ")", ":", "if", "six", ".", "PY3", "or", "not", "salt", ".", "utils", ".", "platform", ".", "is_windows", "(", ")", ":", "return", "os", ".", "path", ".", "islink", "(", "path", ")", "if", "not", "HAS_WIN32FILE", ":", ...	31.484848	0.002801
def add_key(self, key, label, notes=None): """Adds a new SSH key to the account. :param string key: The SSH key to add :param string label: The label for the key :param string notes: Additional notes for the key :returns: A dictionary of the new key's information. """ ...	[ "def", "add_key", "(", "self", ",", "key", ",", "label", ",", "notes", "=", "None", ")", ":", "order", "=", "{", "'key'", ":", "key", ",", "'label'", ":", "label", ",", "'notes'", ":", "notes", ",", "}", "return", "self", ".", "sshkey", ".", "cre...	30.6	0.004228
def _build_models_query(self, query): """ Builds a query from `query` that filters to documents only from registered models. """ registered_models_ct = self.build_models_list() if registered_models_ct: restrictions = [xapian.Query('%s%s' % (TERM_PREFIXES[DJANGO_CT], m...	[ "def", "_build_models_query", "(", "self", ",", "query", ")", ":", "registered_models_ct", "=", "self", ".", "build_models_list", "(", ")", "if", "registered_models_ct", ":", "restrictions", "=", "[", "xapian", ".", "Query", "(", "'%s%s'", "%", "(", "TERM_PREF...	42.538462	0.00708
def _find_dependant_trees(self, tree_obj): """ returns list of trees that are dependent_on given tree_obj """ dependant_trees = [] for tree_name, tree in self.trees.items(): if tree_obj in tree.dependent_on: dependant_trees.append(tree) return dependant_trees	[ "def", "_find_dependant_trees", "(", "self", ",", "tree_obj", ")", ":", "dependant_trees", "=", "[", "]", "for", "tree_name", ",", "tree", "in", "self", ".", "trees", ".", "items", "(", ")", ":", "if", "tree_obj", "in", "tree", ".", "dependent_on", ":", ...	44.714286	0.00627
def parse_rrule(component, tz=UTC): """ Extract a dateutil.rrule object from an icalendar component. Also includes the component's dtstart and exdate properties. The rdate and exrule properties are not yet supported. :param component: icalendar component :param tz: timezone for DST handling...	[ "def", "parse_rrule", "(", "component", ",", "tz", "=", "UTC", ")", ":", "if", "component", ".", "get", "(", "'rrule'", ")", ":", "# component['rrule'] can be both a scalar and a list", "rrules", "=", "component", "[", "'rrule'", "]", "if", "not", "isinstance", ...	37.108696	0.005137
def set_timer(self, timer="wall"): """Set the timer function Parameters ---------- timer : {'wall', 'cpu', or callable} Timer function used to measure task running times. 'wall' uses `time.time`, 'cpu' uses `time.process_time` Returns ---...	[ "def", "set_timer", "(", "self", ",", "timer", "=", "\"wall\"", ")", ":", "if", "timer", "==", "\"wall\"", ":", "timer", "=", "time", ".", "time", "elif", "timer", "==", "\"cpu\"", ":", "try", ":", "timer", "=", "time", ".", "process_time", "except", ...	30.25	0.00267
def do_dots(self, value, *dots): """Evaluate dotted expressions at runtime.""" for dot in dots: try: value = getattr(value, dot) except AttributeError: value = value[dot] if hasattr(value, '__call__'): value = value() ...	[ "def", "do_dots", "(", "self", ",", "value", ",", "*", "dots", ")", ":", "for", "dot", "in", "dots", ":", "try", ":", "value", "=", "getattr", "(", "value", ",", "dot", ")", "except", "AttributeError", ":", "value", "=", "value", "[", "dot", "]", ...	32.9	0.005917
def difference(self, iterables): """ Return a new set with elements in the set that are not in the iterables. """ diff = self._set.difference(iterables) return self._fromset(diff, key=self._key)	[ "def", "difference", "(", "self", ",", "", "iterables", ")", ":", "diff", "=", "self", ".", "_set", ".", "difference", "(", "", "iterables", ")", "return", "self", ".", "_fromset", "(", "diff", ",", "key", "=", "self", ".", "_key", ")" ]	34.285714	0.00813
def nn_dims(self, x, y, dims_x, dims_y, k=1, radius=np.inf, eps=0.0, p=2): """Find the k nearest neighbors of a subset of dims of x and y in the observed output data @see Databag.nn() for argument description @return distance and indexes of found nearest neighbors. """ assert le...	[ "def", "nn_dims", "(", "self", ",", "x", ",", "y", ",", "dims_x", ",", "dims_y", ",", "k", "=", "1", ",", "radius", "=", "np", ".", "inf", ",", "eps", "=", "0.0", ",", "p", "=", "2", ")", ":", "assert", "len", "(", "x", ")", "==", "len", ...	56.904762	0.01893
def _create_bvals_bvecs(multiframe_dicom, bval_file, bvec_file, nifti, nifti_file): """ Write the bvals from the sorted dicom files to a bval file Inspired by https://github.com/IBIC/ibicUtils/blob/master/ibicBvalsBvecs.py """ # create the empty arrays number_of_stack_slices = common.get_ss_val...	[ "def", "_create_bvals_bvecs", "(", "multiframe_dicom", ",", "bval_file", ",", "bvec_file", ",", "nifti", ",", "nifti_file", ")", ":", "# create the empty arrays", "number_of_stack_slices", "=", "common", ".", "get_ss_value", "(", "multiframe_dicom", "[", "Tag", "(", ...	46.228571	0.005448
def data_group_type(self, group_data): """Return dict representation of group data. Args: group_data (dict\|obj): The group data dict or object. Returns: dict: The group data in dict format. """ if isinstance(group_data, dict): # process file ...	[ "def", "data_group_type", "(", "self", ",", "group_data", ")", ":", "if", "isinstance", "(", "group_data", ",", "dict", ")", ":", "# process file content", "file_content", "=", "group_data", ".", "pop", "(", "'fileContent'", ",", "None", ")", "if", "file_conte...	38.708333	0.003151
def show_run(): ''' Shortcut to run `show run` on switch .. code-block:: bash salt '*' onyx.cmd show_run ''' try: enable() configure_terminal() ret = sendline('show running-config') configure_terminal_exit() disable() except TerminalException as ...	[ "def", "show_run", "(", ")", ":", "try", ":", "enable", "(", ")", "configure_terminal", "(", ")", "ret", "=", "sendline", "(", "'show running-config'", ")", "configure_terminal_exit", "(", ")", "disable", "(", ")", "except", "TerminalException", "as", "e", "...	22.111111	0.00241

def arbiter(**params): '''Obtain the ``arbiter``. It returns the arbiter instance only if we are on the arbiter context domain, otherwise it returns nothing. ''' arbiter = get_actor() if arbiter is None: # Create the arbiter return set_actor(_spawn_actor('arbiter', None, **param...

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def WhereIs(self, prog, path=None, pathext=None, reject=[]): """Find prog in the path. """ if path is None: try: path = self['ENV']['PATH'] except KeyError: pass elif SCons.Util.is_String(path): path = self.subst(path) ...

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def transmit_content_metadata(self, user): """ Transmit content metadata to integrated channel. """ exporter = self.get_content_metadata_exporter(user) transmitter = self.get_content_metadata_transmitter() transmitter.transmit(exporter.export())

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def where(self, column, operator=Null(), value=None, boolean="and"): """ Add a where clause to the query :param column: The column of the where clause, can also be a QueryBuilder instance for sub where :type column: str|Builder :param operator: The operator of the where clause ...

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def find_location(rows, element_to_find): '''Find the location of a piece in the puzzle. Returns a tuple: row, column''' for ir, row in enumerate(rows): for ic, element in enumerate(row): if element == element_to_find: return ir, ic

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def gen_slide_seg_list(mm_begin, mm_end, seg_duration, slide_step): """ 生成时间片开始时刻列表,时间片以slide_step步长进行滑动 :param mm_begin: :param mm_end: :param seg_duration: :param slide_step: :return: """ seg_begin_list = [i for i in range(mm_begin, mm_end - seg_duration + 1, ...

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def filter_tree(tree): """Filter all 401 errors.""" to_remove = [] for elem in tree.findall('urldata'): valid = elem.find('valid') if valid is not None and valid.text == '0' and \ valid.attrib.get('result', '').startswith('401'): to_remove.append(elem) root = tree....

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def select(read_streams, write_streams, timeout=0): """ Select the streams from `read_streams` that are ready for reading, and streams from `write_streams` ready for writing. Uses `select.select()` internally but only returns two lists of ready streams. """ exception_streams = [] try: ...

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def evaluate(self, verbose=False, decode=True, passes=None, num_threads=1, apply_experimental=True): """Evaluates by creating a MultiIndex containing evaluated data and index. See `LazyResult` Returns ------- MultiIndex MultiIndex with evaluated data. """ ...

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def find_carbon_sources(model): """ Find all active carbon source reactions. Parameters ---------- model : Model A genome-scale metabolic model. Returns ------- list The medium reactions with carbon input flux. """ try: model.slim_optimize(error_value=N...

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def print_pixy_blocks(blocks): """ Prints the Pixy blocks data.""" print("Detected " + str(len(blocks)) + " Pixy blocks:") if len(blocks) > 0 and not "signature" in blocks[0]: print("Something went wrong. This does not appear to be a printable block.") board.shutdown() return fo...

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def stop(self, bIgnoreExceptions = True): """ Stops debugging all processes. If the kill on exit mode is on, debugged processes are killed when the debugger is stopped. Otherwise when the debugger stops it detaches from all debugged processes and leaves them running (default). F...

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def _searchable_form(self) -> 'Language': """ Convert a parsed language tag so that the information it contains is in the best form for looking up information in the CLDR. """ if self._searchable is not None: return self._searchable self._searchable = self._f...

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def _fake_associatornames(self, namespace, **params): # pylint: disable=invalid-name """ Implements a mock WBEM server responder for :meth:`~pywbem.WBEMConnection.AssociatorNames` """ self._validate_namespace(namespace) rc = None if params['ResultClass'] is None...

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def resp_set_power(self, resp, power_level=None): """Default callback for get_power/set_power """ if power_level is not None: self.power_level=power_level elif resp: self.power_level=resp.power_level

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def Exp(self, m=None): """Exponentiates the probabilities. m: how much to shift the ps before exponentiating If m is None, normalizes so that the largest prob is 1. """ if not self.log: raise ValueError("Pmf/Hist not under a log transform") self.log = False ...

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def existing_versions(self): """ Returns data with different cfgstr values that were previously computed with this cacher. Example: >>> from ubelt.util_cache import Cacher >>> # Ensure that some data exists >>> known_fnames = set() >>> cac...

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def _extract_model_params(self, defaults, **kwargs): """this method allows django managers use `objects.get_or_create` and `objects.update_or_create` on a hashable object. """ obj = kwargs.pop(self.object_property_name, None) if obj is not None: kwargs['object_hash'] ...

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def which(program, path=None): """ Returns the full path of shell commands. Replicates the functionality of system which (1) command. Looks for the named program in the directories indicated in the $PATH environment variable, and returns the full path if found. Examples: >>> system.wh...

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def update_fit_box(self, new_fit=False): """ alters fit_box lists to match with changes in specimen or new/ removed interpretations Parameters ---------- new_fit : boolean representing if there is a new fit Alters ------ fit_box selection and cho...

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def import_key(text=None, filename=None, user=None, gnupghome=None): r''' Import a key from text or file text The text containing to import. filename The filename containing the key to import. user Which user's keychain to acces...

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def PluginTagToContent(self, plugin_name): """Returns a dict mapping tags to content specific to that plugin. Args: plugin_name: The name of the plugin for which to fetch plugin-specific content. Raises: KeyError: if the plugin name is not found. Returns: A dict mapping tags...

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def _expected_reads(run_info_file): """Parse the number of expected reads from the RunInfo.xml file. """ reads = [] if os.path.exists(run_info_file): tree = ElementTree() tree.parse(run_info_file) read_elem = tree.find("Run/Reads") reads = read_elem.findall("Read") re...

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def feed_identities(self, msg_list, copy=True): """Split the identities from the rest of the message. Feed until DELIM is reached, then return the prefix as idents and remainder as msg_list. This is easily broken by setting an IDENT to DELIM, but that would be silly. Parameters...

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def _archive_extensions(): """Create translations from file extension to archive format Returns ------- dict The mapping from file extension to archive format dict The mapping from archive format to default file extension """ if six.PY3: ...

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def run_filter_radia(job, bams, radia_file, univ_options, radia_options, chrom): """ Run filterradia on the RADIA output. :param dict bams: Dict of bam and bai for tumor DNA-Seq, normal DNA-Seq and tumor RNA-Seq :param toil.fileStore.FileID radia_file: The vcf from runnning RADIA :param dict univ_o...

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def _mb_model(self, beta, mini_batch): """ Creates the structure of the model (model matrices etc) for mini batch model Parameters ---------- beta : np.ndarray Contains untransformed starting values for the latent variables mini_batch : int Mini batch si...

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def list_nodes(): ''' List virtual machines .. code-block:: bash salt-cloud -Q ''' session = _get_session() vms = session.xenapi.VM.get_all_records() ret = {} for vm in vms: record = session.xenapi.VM.get_record(vm) if not record['is_a_template'] and not re...

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def getModule(self, moduleName): """ Retrieve a JavaScript module cache from the file path cache. @returns: Module cache for the named module. @rtype: L{CachedJSModule} """ if moduleName not in self.moduleCache: modulePath = FilePath( athena.j...

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def _get_list_prefix(self, param_prefix): """ Given a query dict like { 'Steps.member.1.Name': ['example1'], 'Steps.member.1.ActionOnFailure': ['TERMINATE_JOB_FLOW'], 'Steps.member.1.HadoopJarStep.Jar': ['streaming1.jar'], 'Steps.member.2.Name': ['...

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def c_source(self): """Return strings.""" relocs = Relocs( ''.join(self.c_self_relocs()), *self.c_module_relocs() ) return Source( ''.join(self.c_typedefs()), '' if self.opts.no_structs else self.c_struct(), ''.join(self.c_hashes()), ...

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def run_steps(spec, language="en"): """ Can be called by the user from within a step definition to execute other steps. """ # The way this works is a little exotic, but I couldn't think of a better way to work around # the fact that this has to be a global function and therefore cannot know about which ste...

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def _get_popularity_baseline(self): """ Returns a new popularity model matching the data set this model was trained with. Can be used for comparison purposes. """ response = self.__proxy__.get_popularity_baseline() from .popularity_recommender import PopularityRecommen...

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def get_rst_relation_root_nodes(docgraph, data=True, rst_namespace='rst'): """ yield all nodes that dominate one or more RST relations in the given document graph (in no particular order). Parameters ---------- docgraph : DiscourseDocumentGraph a document graph which contains RST annota...

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def meco_velocity(m1, m2, chi1, chi2): """ Returns the velocity of the minimum energy cutoff for 3.5pN (2.5pN spin) Parameters ---------- m1 : float First component mass in solar masses m2 : float Second component mass in solar masses chi1 : float First component dim...

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async def sleep_async(self, seconds): """Lock the connection for a given number of seconds. :param seconds: Length of time to lock the connection. :type seconds: int """ try: await self.lock_async() await asyncio.sleep(seconds) except asyncio.Time...

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def IsEnabled(self, *args, **kwargs): "check if all top menus are enabled" for i in range(self.GetMenuCount()): if not self.IsEnabledTop(i): return False return True

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def experiments_predictions_image_set_create(self, experiment_id, run_id, filename): """Create a prediction image set from a given tar archive that was produced as the result of a successful model run. Returns None if the specified model run does not exist or did not finish successfully...

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def createTable(dbconn, pd): """Creates a database table for the given PacketDefinition.""" cols = ('%s %s' % (defn.name, getTypename(defn)) for defn in pd.fields) sql = 'CREATE TABLE IF NOT EXISTS %s (%s)' % (pd.name, ', '.join(cols)) dbconn.execute(sql) dbconn.commit()

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async def request( self, method: str, endpoint: str, *, base_url: str = API_URL_SCAFFOLD, headers: dict = None, params: dict = None, json: dict = None) -> dict: """Make a request against AirVisual.""" if not ...

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def unpack_bytes(self, obj_bytes, encoding=None): """Unpack a byte stream into a dictionary.""" assert self.bytes_to_dict or self.string_to_dict encoding = encoding or self.default_encoding LOGGER.debug('%r decoding %d bytes with encoding of %s', self, len(obj_bytes)...

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def json2value(json_string, params=Null, flexible=False, leaves=False): """ :param json_string: THE JSON :param params: STANDARD JSON PARAMS :param flexible: REMOVE COMMENTS :param leaves: ASSUME JSON KEYS ARE DOT-DELIMITED :return: Python value """ if not is_text(json_string): L...

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def _from_dict(cls, _dict): """Initialize a KeywordsResult object from a json dictionary.""" args = {} if 'count' in _dict: args['count'] = _dict.get('count') if 'relevance' in _dict: args['relevance'] = _dict.get('relevance') if 'text' in _dict: ...

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def supported_versions(django, cms): """ Convert numeric and literal version information to numeric format """ cms_version = None django_version = None try: cms_version = Decimal(cms) except (ValueError, InvalidOperation): try: cms_version = CMS_VERSION_MATRIX[st...

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def analyzeParameters(expName, suite): """ Analyze the impact of each list parameter in this experiment """ print("\n================",expName,"=====================") try: expParams = suite.get_params(expName) pprint.pprint(expParams) for p in ["boost_strength", "k", "learning_rate", "weight_spa...

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def _add_node(self, node, depth): """Add a node to the graph, and the stack.""" self._topmost_node.add_child(node, bool(depth[1])) self._stack.append((depth, node))

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def ekgi(selidx, row, element): """ Return an element of an entry in a column of integer type in a specified row. http://naif.jpl.nasa.gov/pub/naif/toolkit_docs/C/cspice/ekgi_c.html :param selidx: Index of parent column in SELECT clause. :type selidx: int :param row: Row to fetch from. ...

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def split_by_extensions(filename): """ Splits the filename string by the extension of the file """ parts = filename.split('.') idx = len(parts) - 1 while FileFormat.is_file_format(parts[idx]): parts[idx] = FileFormat(parts[idx]) idx -= 1 return ['....

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def reproduce(past_analysis, plotting=False, data_folder=None, srm_table=None, custom_stat_functions=None): """ Reproduce a previous analysis exported with :func:`latools.analyse.minimal_export` For normal use, supplying `log_file` and specifying a plotting option should be enough to repr...

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def birth(self): ''' Create the individual (compute the spline curve) ''' spline = scipy.interpolate.splrep(self.x, self.y) self.y_int = scipy.interpolate.splev(self.x_int,spline)

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def wrap_text(translations, linewrap=0): """Pretty print translations. If linewrap is set to 0 disble line wrapping. Parameters ---------- translations : list List of word translations. linewrap : int Maximum line length before wrapping. """ # pylint: disable=too-many-l...

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def init(library: typing.Union[str, types.ModuleType]) -> None: ''' Must be called at some point after import and before your event loop is run. Populates the asynclib instance of _AsyncLib with methods relevant to the async library you are using. The supported libraries at the moment are: ...

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def update(cls,table, dic, Id): """ Update row with Id from table. Set fields given by dic.""" if dic: req = "UPDATE {table} SET {SET} WHERE id = " + cls.named_style.format('__id') + " RETURNING * " r = abstractRequetesSQL.formate(req, SET=dic, table=table, args=dict(dic, __id=I...

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def single_gate_params(gate, params=None): """Apply a single qubit gate to the qubit. Args: gate(str): the single qubit gate name params(list): the operation parameters op['params'] Returns: tuple: a tuple of U gate parameters (theta, phi, lam) Raises: QiskitError: if th...

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def decode(self, session_data): """decodes the data to get back the session dict """ pickled = decodebytes(utf8(session_data)) return pickle.loads(pickled)

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def move_to(self, location): """Changes the location of this medium. Some medium types may support changing the storage unit location by simply changing the value of the associated property. In this case the operation is performed immediately, and @a progress is returning a @c null refer...

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def reset(self): """ Resets state and uid set. To be called asap to free memory """ self.reached_limit = False self.count = 0 self.seen.clear()

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def gen_stack_patches(patch_list, nr_row=None, nr_col=None, border=None, max_width=1000, max_height=1000, bgcolor=255, viz=False, lclick_cb=None): """ Similar to :func:`stack_patches` but with a generator interface. It takes a much-longer lis...

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def _gen_new_subtoken_list( subtoken_counts, min_count, alphabet, reserved_tokens=None): """Generate candidate subtokens ordered by count, and new max subtoken length. Add subtokens to the candiate list in order of length (longest subtokens first). When a subtoken is added, the counts of each of its prefixes...

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def compute_score(attr, mcmap, NN, feature, inst, nan_entries, headers, class_type, X, y, labels_std, data_type, near=True): """Flexible feature scoring method that can be used with any core Relief-based method. Scoring proceeds differently based on whether endpoint is binary, multiclass, or continuous. This ...

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def delete_lambda_deprecated(awsclient, function_name, s3_event_sources=[], time_event_sources=[], delete_logs=False): # FIXME: mutable default arguments! """Deprecated: please use delete_lambda! :param awsclient: :param function_name: :param s3_event_sources: :para...

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39.166667

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def save(filepath, obj, compressed=True): """ Save the object to a .npz file. Parameters ---------- filepath : str The path to save the file. obj: `pypianoroll.Multitrack` objects The object to be saved. """ if not isinstance(obj, Multitrack): raise TypeError("S...

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def unmount(self, remove_rw=False, allow_lazy=False): """Removes all ties of this disk to the filesystem, so the image can be unmounted successfully. :raises SubsystemError: when one of the underlying commands fails. Some are swallowed. :raises CleanupError: when actual cleanup fails. Some are ...

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def get_stats_summary_dict(self): """Returns basic stats. Returns a `dict` with various counts and stats, see below. """ uptime = time.time() - self._established_time \ if self._established_time != 0 else -1 return { stats.UPDATE_MSG_IN: self.get_count(Pe...

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def get_reposts(self): """ https://vk.com/dev/wall.getReposts """ return self._session.fetch_items('wall.getReposts', self.from_json, count=1000, owner_id=self.from_id, post_id=self.id)

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def getObjDebugName(self, obj: Union[Interface, Unit, Param]) -> str: """ :see: doc of method on parent class """ return obj._getFullName()

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def list_job_ids(self, skip=0, limit=20): """ Returns a list of job ids on a queue """ return [str(x["_id"]) for x in self.collection.find( {"status": "queued"}, sort=[("_id", -1 if self.is_reverse else 1)], projection={"_id": 1}) ]

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def create_child(self, nurest_object, response_choice=None, async=False, callback=None, commit=True): """ Add given nurest_object to the current object For example, to add a child into a parent, you can call parent.create_child(nurest_object=child) Args: nur...

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def server_hardreset(host=None, admin_username=None, admin_password=None, module=None): ''' Performs a reset (reboot) operation on the managed server. host The chassis host. admin_username The username used to access the ch...

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def _filter_cache(self, dmap, kdims): """ Returns a filtered version of the DynamicMap cache leaving only keys consistently with the newly specified values """ filtered = [] for key, value in dmap.data.items(): if not any(kd.values and v not in kd.values for k...

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40.6

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def column_or_1d(y, warn=False): """ Ravel column or 1d numpy array, else raises an error Parameters ---------- y : array-like Returns ------- y : array """ shape = np.shape(y) if len(shape) == 1: return np.ravel(y) if len(shape) == 2 and shape[1] == 1: if ...

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def check_complete(self): """ Runs completion flow for this task if it's finished. """ logger.debug('Running check_complete for task {0}'.format(self.name)) # Tasks not completed if self.remote_not_complete() or self.local_not_complete(): self._start_check_timer() ...

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38.482759

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def get_mix_gen(self, sample): """Returns function that returns sequence of characters of a given length from a given sample """ def mix(length): result = "".join(random.choice(sample) for _ in xrange(length)).strip() if len(result) == length: retu...

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37

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def add(self, source_id=None, file_path=None, profile_reference="", timestamp_reception=None, training_metadata=[]): """ Add a profile resume to a sourced id. Args: source_id: <string> source id file_path: ...

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def create_temporary_table(from_table, name=None, on_commit=None): """ Create a new temporary table from another table. """ from_table = from_table.__table__ if hasattr(from_table, "__table__") else from_table name = name or f"temporary_{from_table.name}" # copy the origin table into the meta...

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def include(self, pattern): """Include files that match 'pattern'.""" found = [f for f in glob(pattern) if not os.path.isdir(f)] self.extend(found) return bool(found)

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def disassociate_success_node(self, parent, child): """Remove success node. The resulatant 2 nodes will both become root nodes. =====API DOCS===== Remove success node. :param parent: Primary key of parent node to disassociate success node from. :type parent: int ...

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def cbk_qptdm_workflow(self, cbk): """ This callback is executed by the flow when bands_work.nscf_task reaches S_OK. It computes the list of q-points for the W(q,G,G'), creates nqpt tasks in the second work (QptdmWork), and connect the signals. """ scr_input = cbk.data["...

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def LoadChecksFromFiles(file_paths, overwrite_if_exists=True): """Load the checks defined in the specified files.""" loaded = [] for file_path in file_paths: configs = LoadConfigsFromFile(file_path) for conf in itervalues(configs): check = Check(**conf) # Validate will raise if the check doesn...

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def parse(self, argv): """Pop, parse and return the first self.nargs items from args. if self.nargs > 1 a list of parsed values will be returned. Raise BadNumberOfArguments or BadArgument on errors. NOTE: argv may be modified in place by this method. """ ...

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def evaluate_at(self, eval_at, testcases, mode=None): """ Sets the evaluation interation indices. :param list eval_at: iteration indices where an evaluation should be performed :param numpy.array testcases: testcases used for evaluation """ self.eval_at = eval_at ...

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def makedirs(name): """helper function for python 2 and 3 to call os.makedirs() avoiding an error if the directory to be created already exists""" import os, errno try: os.makedirs(name) except OSError as ex: if ex.errno == errno.EEXIST and os.path.isdir(name): # ign...

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def get(name, function=None): """Get a setting. `name` should be the name of the setting to look for. If the optional argument `function` is passed, this will look for a value local to the function before retrieving the global value. """ if function is not None:...

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def get_fields(model, fields=None): """ Assigns fields for model. """ include = [f.strip() for f in fields.split(',')] if fields else None return utils.get_fields( model, include )

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def register(model): """ Register the given model class and wrapped AlgoliaIndex class with the Algolia engine: @register(Author) class AuthorIndex(AlgoliaIndex): pass """ from algoliasearch_django import AlgoliaIndex, register def _algolia_engine_wrapper(index_class): if ...

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def send_command(self, cmd, priority=False): """ Flushes a command to the server as a bytes payload. """ if priority: self._pending.insert(0, cmd) else: self._pending.append(cmd) self._pending_size += len(cmd) if self._pending_size > DEFAU...

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def as_srec(self, number_of_data_bytes=32, address_length_bits=32): """Format the binary file as Motorola S-Records records and return them as a string. `number_of_data_bytes` is the number of data bytes in each record. `address_length_bits` is the number of address bits in eac...

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def _generate_iam_invoke_role_policy(self): """ Generate the policy for the IAM role used by API Gateway to invoke the lambda function. Terraform name: aws_iam_role.invoke_role """ invoke_pol = { "Version": "2012-10-17", "Statement": [ ...

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def islink(path): ''' Equivalent to os.path.islink() ''' if six.PY3 or not salt.utils.platform.is_windows(): return os.path.islink(path) if not HAS_WIN32FILE: log.error('Cannot check if %s is a link, missing required modules', path) if not _is_reparse_point(path): retur...

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def add_key(self, key, label, notes=None): """Adds a new SSH key to the account. :param string key: The SSH key to add :param string label: The label for the key :param string notes: Additional notes for the key :returns: A dictionary of the new key's information. """ ...

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def _build_models_query(self, query): """ Builds a query from `query` that filters to documents only from registered models. """ registered_models_ct = self.build_models_list() if registered_models_ct: restrictions = [xapian.Query('%s%s' % (TERM_PREFIXES[DJANGO_CT], m...

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def _find_dependant_trees(self, tree_obj): """ returns list of trees that are dependent_on given tree_obj """ dependant_trees = [] for tree_name, tree in self.trees.items(): if tree_obj in tree.dependent_on: dependant_trees.append(tree) return dependant_trees

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def parse_rrule(component, tz=UTC): """ Extract a dateutil.rrule object from an icalendar component. Also includes the component's dtstart and exdate properties. The rdate and exrule properties are not yet supported. :param component: icalendar component :param tz: timezone for DST handling...

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def set_timer(self, timer="wall"): """Set the timer function Parameters ---------- timer : {'wall', 'cpu', or callable} Timer function used to measure task running times. 'wall' uses `time.time`, 'cpu' uses `time.process_time` Returns ---...

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def do_dots(self, value, *dots): """Evaluate dotted expressions at runtime.""" for dot in dots: try: value = getattr(value, dot) except AttributeError: value = value[dot] if hasattr(value, '__call__'): value = value() ...

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def difference(self, *iterables): """ Return a new set with elements in the set that are not in the *iterables*. """ diff = self._set.difference(*iterables) return self._fromset(diff, key=self._key)

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def nn_dims(self, x, y, dims_x, dims_y, k=1, radius=np.inf, eps=0.0, p=2): """Find the k nearest neighbors of a subset of dims of x and y in the observed output data @see Databag.nn() for argument description @return distance and indexes of found nearest neighbors. """ assert le...

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def _create_bvals_bvecs(multiframe_dicom, bval_file, bvec_file, nifti, nifti_file): """ Write the bvals from the sorted dicom files to a bval file Inspired by https://github.com/IBIC/ibicUtils/blob/master/ibicBvalsBvecs.py """ # create the empty arrays number_of_stack_slices = common.get_ss_val...

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def data_group_type(self, group_data): """Return dict representation of group data. Args: group_data (dict|obj): The group data dict or object. Returns: dict: The group data in dict format. """ if isinstance(group_data, dict): # process file ...

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def show_run(): ''' Shortcut to run `show run` on switch .. code-block:: bash salt '*' onyx.cmd show_run ''' try: enable() configure_terminal() ret = sendline('show running-config') configure_terminal_exit() disable() except TerminalException as ...

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