kejian/codesearchnet-python-pep8-full · Datasets at Hugging Face

text stringlengths 75 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 0.18
def environment(request=None): """ Return ``COMPRESS_ENABLED``, ``SITE_NAME``, and any settings listed in ``ICEKIT_CONTEXT_PROCESSOR_SETTINGS`` as context. """ context = { 'COMPRESS_ENABLED': settings.COMPRESS_ENABLED, 'SITE_NAME': settings.SITE_NAME, } for key in settings.IC...	[ "def", "environment", "(", "request", "=", "None", ")", ":", "context", "=", "{", "'COMPRESS_ENABLED'", ":", "settings", ".", "COMPRESS_ENABLED", ",", "'SITE_NAME'", ":", "settings", ".", "SITE_NAME", ",", "}", "for", "key", "in", "settings", ".", "ICEKIT_CO...	34.333333	0.002364
def _execute_for_run_dates(self, run_dates, ti_status, executor, pickle_id, start_date, session=None): """ Computes the dag runs and their respective task instances for the given run dates and executes the task instances. Returns a list of execution dates o...	[ "def", "_execute_for_run_dates", "(", "self", ",", "run_dates", ",", "ti_status", ",", "executor", ",", "pickle_id", ",", "start_date", ",", "session", "=", "None", ")", ":", "for", "next_run_date", "in", "run_dates", ":", "dag_run", "=", "self", ".", "_get_...	44.394737	0.00232
def get_full_archive_path(self, path): """ Returns the full archive path """ return os.path.join(self.archive_dir, path.lstrip('/'))	[ "def", "get_full_archive_path", "(", "self", ",", "path", ")", ":", "return", "os", ".", "path", ".", "join", "(", "self", ".", "archive_dir", ",", "path", ".", "lstrip", "(", "'/'", ")", ")" ]	32	0.012195
def push(path, keep_symlinks=False, upload_path=None, remove_source=False): ''' WARNING Files pushed to the master will have global read permissions.. Push a file from the minion up to the master, the file will be saved to the salt master in the master's minion files cachedir (defaults to ``/var/ca...	[ "def", "push", "(", "path", ",", "keep_symlinks", "=", "False", ",", "upload_path", "=", "None", ",", "remove_source", "=", "False", ")", ":", "log", ".", "debug", "(", "'Trying to copy \\'%s\\' to master'", ",", "path", ")", "if", "'../'", "in", "path", "...	38.795699	0.001081
def verify(self, base_path, update=False): """Verify the submission and return testables that can be executed.""" return self.project.verify_submission(base_path, self, update=update)	[ "def", "verify", "(", "self", ",", "base_path", ",", "update", "=", "False", ")", ":", "return", "self", ".", "project", ".", "verify_submission", "(", "base_path", ",", "self", ",", "update", "=", "update", ")" ]	65.666667	0.01005
def reject(self, reason): """Rejects the promise with the given reason.""" if self._state != 'pending': raise RuntimeError('Promise is no longer pending.') self.reason = reason self._state = 'rejected' errbacks = self._errbacks self._errbacks = None f...	[ "def", "reject", "(", "self", ",", "reason", ")", ":", "if", "self", ".", "_state", "!=", "'pending'", ":", "raise", "RuntimeError", "(", "'Promise is no longer pending.'", ")", "self", ".", "reason", "=", "reason", "self", ".", "_state", "=", "'rejected'", ...	32.818182	0.005391
def _pirls(self, X, Y, weights): """ Performs stable PIRLS iterations to estimate GAM coefficients Parameters --------- X : array-like of shape (n_samples, m_features) containing input data Y : array-like of shape (n,) containing target data ...	[ "def", "_pirls", "(", "self", ",", "X", ",", "Y", ",", "weights", ")", ":", "modelmat", "=", "self", ".", "_modelmat", "(", "X", ")", "# build a basis matrix for the GLM", "n", ",", "m", "=", "modelmat", ".", "shape", "# initialize GLM coefficients if model is...	34.831776	0.007044
def sample_bitstrings(self, n_samples): """ Sample bitstrings from the distribution defined by the wavefunction. :param n_samples: The number of bitstrings to sample :return: An array of shape (n_samples, n_qubits) """ possible_bitstrings = np.array(list(itertools.produc...	[ "def", "sample_bitstrings", "(", "self", ",", "n_samples", ")", ":", "possible_bitstrings", "=", "np", ".", "array", "(", "list", "(", "itertools", ".", "product", "(", "(", "0", ",", "1", ")", ",", "repeat", "=", "len", "(", "self", ")", ")", ")", ...	45.272727	0.007874
def eval_objfn(self): """Compute components of objective function as well as total contribution to objective function. """ fval = self.obfn_f(self.X) gval = self.obfn_g(self.X) obj = fval + gval return (obj, fval, gval)	[ "def", "eval_objfn", "(", "self", ")", ":", "fval", "=", "self", ".", "obfn_f", "(", "self", ".", "X", ")", "gval", "=", "self", ".", "obfn_g", "(", "self", ".", "X", ")", "obj", "=", "fval", "+", "gval", "return", "(", "obj", ",", "fval", ",",...	29.777778	0.007246
def _export_prb_file(recording, file_name, format=None, adjacency_distance=None, graph=False, geometry=True, radius=100, dimensions='all'): '''Exports .prb file Parameters ---------- recording: RecordingExtractor The recording extractor to save probe file from file_name...	[ "def", "_export_prb_file", "(", "recording", ",", "file_name", ",", "format", "=", "None", ",", "adjacency_distance", "=", "None", ",", "graph", "=", "False", ",", "geometry", "=", "True", ",", "radius", "=", "100", ",", "dimensions", "=", "'all'", ")", ...	39.74359	0.001888
def pull(self): """This coroutine handles the server connection, does a basic parse on the received messages and put them in a queue named events. The controllers pull method will take the messages from that queue. """ self.sock = sockets.Socket() self.sock.settimeo...	[ "def", "pull", "(", "self", ")", ":", "self", ".", "sock", "=", "sockets", ".", "Socket", "(", ")", "self", ".", "sock", ".", "settimeout", "(", "self", ".", "sock_timo", ")", "yield", "events", ".", "AddCoro", "(", "self", ".", "monitor", ")", "wh...	46.742857	0.003593
def api_model_exists(restApiId, modelName, region=None, key=None, keyid=None, profile=None): ''' Check to see if the given modelName exists in the given restApiId CLI Example: .. code-block:: bash salt myminion boto_apigateway.api_model_exists restApiId modelName ''' r = describe_api_...	[ "def", "api_model_exists", "(", "restApiId", ",", "modelName", ",", "region", "=", "None", ",", "key", "=", "None", ",", "keyid", "=", "None", ",", "profile", "=", "None", ")", ":", "r", "=", "describe_api_model", "(", "restApiId", ",", "modelName", ",",...	33.384615	0.006726
async def lookup(source_id: str, schema_id: str): """ Create a new schema object from an existing ledger schema :param source_id: Institution's personal identification for the schema :param schema_id: Ledger schema ID for lookup Example: source_id = 'foobar123' n...	[ "async", "def", "lookup", "(", "source_id", ":", "str", ",", "schema_id", ":", "str", ")", ":", "try", ":", "schema", "=", "Schema", "(", "source_id", ",", "''", ",", "''", ",", "[", "]", ")", "if", "not", "hasattr", "(", "Schema", ".", "lookup", ...	41.795455	0.002657
def to_dict(self): """Convert a Traceback into a dictionary representation""" if self.tb_next is None: tb_next = None else: tb_next = self.tb_next.to_dict() code = { 'co_filename': self.tb_frame.f_code.co_filename, 'co_name': self.tb_frame...	[ "def", "to_dict", "(", "self", ")", ":", "if", "self", ".", "tb_next", "is", "None", ":", "tb_next", "=", "None", "else", ":", "tb_next", "=", "self", ".", "tb_next", ".", "to_dict", "(", ")", "code", "=", "{", "'co_filename'", ":", "self", ".", "t...	28.2	0.003431
def download_items(cache_fn, start=None): """ Open the `cache_fn` as database and download all not-yet downloaded items. Args: cache_fn (str): Path to the sqlite database. If not exists, it will be created. start (int, default None): If set, start from this sysno. """ wi...	[ "def", "download_items", "(", "cache_fn", ",", "start", "=", "None", ")", ":", "with", "SqliteDict", "(", "cache_fn", ")", "as", "db", ":", "last_id", "=", "db", ".", "get", "(", "\"last_id\"", ",", "0", ")", "if", "not", "start", "else", "start", "_...	35.230769	0.002128
def reconnect(self): ''' Try to reconnect and re-authenticate with the server. ''' log.debug('Closing the SSH socket.') try: self.ssl_skt.close() except socket.error: log.error('The socket seems to be closed already.') log.debug('Re-opening...	[ "def", "reconnect", "(", "self", ")", ":", "log", ".", "debug", "(", "'Closing the SSH socket.'", ")", "try", ":", "self", ".", "ssl_skt", ".", "close", "(", ")", "except", "socket", ".", "error", ":", "log", ".", "error", "(", "'The socket seems to be clo...	32.363636	0.005464
def from_offset(cls, chunk_type, stream_rdr, offset): """ Return an _IHDRChunk instance containing the image dimensions extracted from the IHDR chunk in stream at offset. """ px_width = stream_rdr.read_long(offset) px_height = stream_rdr.read_long(offset, 4) r...	[ "def", "from_offset", "(", "cls", ",", "chunk_type", ",", "stream_rdr", ",", "offset", ")", ":", "px_width", "=", "stream_rdr", ".", "read_long", "(", "offset", ")", "px_height", "=", "stream_rdr", ".", "read_long", "(", "offset", ",", "4", ")", "return", ...	44.375	0.005525
def consume_assignment_list(self): self.expect('(') self.expect('model') """Parses a list of expressions from the tokens""" assignments = [] while True: next_token = self.tokens.consume() self.tokens.add_extra_token(next_token) # push it back ...	[ "def", "consume_assignment_list", "(", "self", ")", ":", "self", ".", "expect", "(", "'('", ")", "self", ".", "expect", "(", "'model'", ")", "assignments", "=", "[", "]", "while", "True", ":", "next_token", "=", "self", ".", "tokens", ".", "consume", "...	27.411765	0.004149
def from_keywords(self, keyword_list, strictness=2, timeout=3): """ Generate a sentence from initial_list. :param list keyword_list: a list of keywords to be included in the sentence. :param int \| None strictness: None for highest strictness. 2 or 1 for a less strict POS matching ...	[ "def", "from_keywords", "(", "self", ",", "keyword_list", ",", "strictness", "=", "2", ",", "timeout", "=", "3", ")", ":", "return", "self", ".", "keyword_parse", ".", "from_keyword_list", "(", "keyword_list", ",", "strictness", ",", "timeout", ")" ]	78.538462	0.006776
def tag_secondary_structure(self, force=False): """Tags each `Residue` of the `Polypeptide` with secondary structure. Notes ----- DSSP must be available to call. Check by running `isambard.external_programs.dssp.test_dssp`. If DSSP is not available, please follow instruc...	[ "def", "tag_secondary_structure", "(", "self", ",", "force", "=", "False", ")", ":", "tagged", "=", "[", "'secondary_structure'", "in", "x", ".", "tags", ".", "keys", "(", ")", "for", "x", "in", "self", ".", "_monomers", "]", "if", "(", "not", "all", ...	38.411765	0.001494
def _seqcluster_stats(data, out_dir): """Parse seqcluster output""" name = dd.get_sample_name(data) fn = data.get("seqcluster", {}).get("stat_file", None) if not fn: return None out_file = os.path.join(out_dir, "%s.txt" % name) df = pd.read_csv(fn, sep="\t", names = ["reads", "sample", "...	[ "def", "_seqcluster_stats", "(", "data", ",", "out_dir", ")", ":", "name", "=", "dd", ".", "get_sample_name", "(", "data", ")", "fn", "=", "data", ".", "get", "(", "\"seqcluster\"", ",", "{", "}", ")", ".", "get", "(", "\"stat_file\"", ",", "None", "...	38.090909	0.006993
def from_attrdict(cls, attrdict: OrderedNamespace) -> object: """ Builds a new instance of the ORM object from values in an attrdict. """ dictionary = attrdict.__dict__ # noinspection PyArgumentList return cls(**dictionary)	[ "def", "from_attrdict", "(", "cls", ",", "attrdict", ":", "OrderedNamespace", ")", "->", "object", ":", "dictionary", "=", "attrdict", ".", "__dict__", "# noinspection PyArgumentList", "return", "cls", "(", "", "", "dictionary", ")" ]	37.857143	0.00738
def _parse_meta_info(self, line): """Parse and extract all meta data by looping through the dictionary of meta_info regexs updates self.meta_info Args: line (str): line of the msp file """ if self.mslevel: self.meta_info['ms_level'] = self.mslevel ...	[ "def", "_parse_meta_info", "(", "self", ",", "line", ")", ":", "if", "self", ".", "mslevel", ":", "self", ".", "meta_info", "[", "'ms_level'", "]", "=", "self", ".", "mslevel", "if", "self", ".", "polarity", ":", "self", ".", "meta_info", "[", "'polari...	28.857143	0.004792
def hardware_port_group_mode_support_multispeed(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") hardware = ET.SubElement(config, "hardware", xmlns="urn:brocade.com:mgmt:brocade-hardware") port_group = ET.SubElement(hardware, "port-group") name_ke...	[ "def", "hardware_port_group_mode_support_multispeed", "(", "self", ",", "", "", "kwargs", ")", ":", "config", "=", "ET", ".", "Element", "(", "\"config\"", ")", "hardware", "=", "ET", ".", "SubElement", "(", "config", ",", "\"hardware\"", ",", "xmlns", "="...	47.5	0.004425
def sort_dependencies(objects): """ Sort a list of instances by their model dependancy graph. This is very similar to Django's sort_dependencies method except for two big differences: 1. We graph dependencies unrelated to natural_key. 2. We take a list of objects, and return a sorted list of o...	[ "def", "sort_dependencies", "(", "objects", ")", ":", "from", "django", ".", "db", ".", "models", "import", "get_model", "# Process the list of models, and get the list of dependencies", "model_dependencies", "=", "[", "]", "models", "=", "set", "(", ")", "model_list"...	39.525641	0.003165
def get_zenith(self, channel=0) -> tuple: """Get the coordinates, in units, of the maximum in a channel. Parameters ---------- channel : int or str (optional) Channel. Default is 0. Returns ------- generator of numbers Coordinates in unit...	[ "def", "get_zenith", "(", "self", ",", "channel", "=", "0", ")", "->", "tuple", ":", "# get channel", "if", "isinstance", "(", "channel", ",", "int", ")", ":", "channel_index", "=", "channel", "elif", "isinstance", "(", "channel", ",", "str", ")", ":", ...	31.4	0.003708
def _get_progress(self): """ Get current progress of emerge. Returns a dict containing current and total value. """ input_data = [] ret = {} # traverse emerge.log from bottom up to get latest information last_lines = self.py3.command_output(["tail", "-50"...	[ "def", "_get_progress", "(", "self", ")", ":", "input_data", "=", "[", "]", "ret", "=", "{", "}", "# traverse emerge.log from bottom up to get latest information", "last_lines", "=", "self", ".", "py3", ".", "command_output", "(", "[", "\"tail\"", ",", "\"-50\"", ...	37.636364	0.010989
def item_options(self, **kwargs): """ Handle collection OPTIONS request. Singular route requests are handled a bit differently because singular views may handle POST requests despite being registered as item routes. """ actions = self._item_actions.copy() if self...	[ "def", "item_options", "(", "self", ",", "", "", "kwargs", ")", ":", "actions", "=", "self", ".", "_item_actions", ".", "copy", "(", ")", "if", "self", ".", "_resource", ".", "is_singular", ":", "actions", "[", "'create'", "]", "=", "(", "'POST'", ...	39.75	0.004098
def _slice_weights(self, arr, li, lh): """slice fused rnn weights""" args = {} gate_names = self._gate_names directions = self._directions b = len(directions) p = 0 for layer in range(self._num_layers): for direction in directions: for...	[ "def", "_slice_weights", "(", "self", ",", "arr", ",", "li", ",", "lh", ")", ":", "args", "=", "{", "}", "gate_names", "=", "self", ".", "_gate_names", "directions", "=", "self", ".", "_directions", "b", "=", "len", "(", "directions", ")", "p", "=", ...	40.342105	0.006369
def get_cgi_parameter_bool_or_default(form: cgi.FieldStorage, key: str, default: bool = None) -> Optional[bool]: """ Extracts a boolean parameter from a CGI form (``"1"`` = ``True``, other string = ``False``, absent/zero-length stri...	[ "def", "get_cgi_parameter_bool_or_default", "(", "form", ":", "cgi", ".", "FieldStorage", ",", "key", ":", "str", ",", "default", ":", "bool", "=", "None", ")", "->", "Optional", "[", "bool", "]", ":", "s", "=", "get_cgi_parameter_str", "(", "form", ",", ...	41.272727	0.002155
def bar(iter_content, parts, title=''): """ Iterates over the "iter_content" and draws a progress bar to stdout. """ parts = max(float(parts), 1.0) cells = 10 progress = 0 step = cells / parts draw = lambda progress: sys.stdout.write( '\r[{0:10}] {1:.2f}% {2}'.format( '#...	[ "def", "bar", "(", "iter_content", ",", "parts", ",", "title", "=", "''", ")", ":", "parts", "=", "max", "(", "float", "(", "parts", ")", ",", "1.0", ")", "cells", "=", "10", "progress", "=", "0", "step", "=", "cells", "/", "parts", "draw", "=", ...	23.857143	0.003839
def ShouldRetry(self, exception): """Returns true if should retry based on the passed-in exception. :param (errors.HTTPFailure instance) exception: :rtype: boolean """ if (self.current_retry_attempt_count < self._max_retry_attempt_count) and self.needsRetry(excepti...	[ "def", "ShouldRetry", "(", "self", ",", "exception", ")", ":", "if", "(", "self", ".", "current_retry_attempt_count", "<", "self", ".", "_max_retry_attempt_count", ")", "and", "self", ".", "needsRetry", "(", "exception", ".", "status_code", ")", ":", "self", ...	32.230769	0.006961
def boxify(message, border_color=None): """Put a message inside a box. Args: message (unicode): message to decorate. border_color (unicode): name of the color to outline the box with. """ lines = message.split("\n") max_width = max(_visual_width(line) for line in lines) padding...	[ "def", "boxify", "(", "message", ",", "border_color", "=", "None", ")", ":", "lines", "=", "message", ".", "split", "(", "\"\\n\"", ")", "max_width", "=", "max", "(", "_visual_width", "(", "line", ")", "for", "line", "in", "lines", ")", "padding_horizont...	30.133333	0.000714
def zan(self, id_reply): ''' 先在外部表中更新，然后更新内部表字段的值。有冗余，但是查看的时候避免了联合查询 ''' logger.info('zan: {0}'.format(id_reply)) MReply2User.create_reply(self.userinfo.uid, id_reply) cur_count = MReply2User.get_voter_count(id_reply) if cur_count: MReply.up...	[ "def", "zan", "(", "self", ",", "id_reply", ")", ":", "logger", ".", "info", "(", "'zan: {0}'", ".", "format", "(", "id_reply", ")", ")", "MReply2User", ".", "create_reply", "(", "self", ".", "userinfo", ".", "uid", ",", "id_reply", ")", "cur_count", "...	29.055556	0.003704
def cos_open(file, mode='r', buffering=-1, encoding=None, errors=None, newline=None, storage=None, storage_parameters=None, unsecure=None, **kwargs): """ Open file and return a corresponding file object. Equivalent to "io.open" or builtin "open". File can also be binary opene...	[ "def", "cos_open", "(", "file", ",", "mode", "=", "'r'", ",", "buffering", "=", "-", "1", ",", "encoding", "=", "None", ",", "errors", "=", "None", ",", "newline", "=", "None", ",", "storage", "=", "None", ",", "storage_parameters", "=", "None", ",",...	41.810811	0.000947
def get_range(self, start=None, stop=None): """Return a RangeMap for the range start to stop. Returns: A RangeMap """ return self.from_iterable(self.ranges(start, stop))	[ "def", "get_range", "(", "self", ",", "start", "=", "None", ",", "stop", "=", "None", ")", ":", "return", "self", ".", "from_iterable", "(", "self", ".", "ranges", "(", "start", ",", "stop", ")", ")" ]	25	0.038674
def argspec_args(argspec, constructor, args, *kwargs): """ Return (args, kwargs) matching the argspec object :param argspec: argspec to use :type argspec: argspec :param constructor: is it a constructor ? :type constructor: bool :param args: :type args: :param kwargs: :type kw...	[ "def", "argspec_args", "(", "argspec", ",", "constructor", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "if", "argspec", ".", "varkw", ":", "call_kwarg", "=", "kwargs", "else", ":", "call_kwarg", "=", "dict", "(", "(", "k", ",", "kwargs", "["...	30.208333	0.002674
def add_polyhedron(self, neighbors, center, color, opacity=1.0, draw_edges=False, edges_color=[0.0, 0.0, 0.0], edges_linewidth=2): """ Adds a polyhedron. Args: neighbors: Neighbors of the polyhedron (the vertices). center: Th...	[ "def", "add_polyhedron", "(", "self", ",", "neighbors", ",", "center", ",", "color", ",", "opacity", "=", "1.0", ",", "draw_edges", "=", "False", ",", "edges_color", "=", "[", "0.0", ",", "0.0", ",", "0.0", "]", ",", "edges_linewidth", "=", "2", ")", ...	39.636364	0.002238
def pretty_str(self, indent=0): """Return a human-readable string representation of this object. Kwargs: indent (int): The amount of spaces to use as indentation. """ spaces = ' ' * indent pretty = spaces + 'class ' + self.name if self.superclasses: ...	[ "def", "pretty_str", "(", "self", ",", "indent", "=", "0", ")", ":", "spaces", "=", "' '", "*", "indent", "pretty", "=", "spaces", "+", "'class '", "+", "self", ".", "name", "if", "self", ".", "superclasses", ":", "superclasses", "=", "', '", ".", "j...	33.2	0.002928
def set_cookie(self, name, value, domain=None, expires=None, path="/", expires_days=None, **kwargs): """Sets the given cookie name/value with the given options. Additional keyword arguments are set on the Cookie.Morsel directly. See http://docs.python.org/library/cook...	[ "def", "set_cookie", "(", "self", ",", "name", ",", "value", ",", "domain", "=", "None", ",", "expires", "=", "None", ",", "path", "=", "\"/\"", ",", "expires_days", "=", "None", ",", "", "", "kwargs", ")", ":", "assert", "self", ".", "cookie_monst...	43.916667	0.007435
def _get_attributes_from_managed_object(self, managed_object, attr_names): """ Given a kmip.pie object and a list of attribute names, attempt to get all of the existing attribute values from the object. """ attr_factory = attribute_factory.AttributeFactory() retrieved_att...	[ "def", "_get_attributes_from_managed_object", "(", "self", ",", "managed_object", ",", "attr_names", ")", ":", "attr_factory", "=", "attribute_factory", ".", "AttributeFactory", "(", ")", "retrieved_attributes", "=", "list", "(", ")", "if", "not", "attr_names", ":",...	39.22	0.000995
def subset_(self, *args): """ Returns a Dataswim instance with a subset data based in positions Select a subset of the main dataframe based on position: ex: ds.subset(0,10) or ds.subset(10) is equivalent: it starts at the first row if only one argument is provided """ ...	[ "def", "subset_", "(", "self", ",", "", "args", ")", ":", "df", "=", "self", ".", "_subset", "(", "", "args", ")", "if", "df", "is", "None", ":", "self", ".", "err", "(", "\"Can not get subset of data\"", ")", "return", "return", "self", ".", "_dup...	38.916667	0.004184
def validateBool(value, blank=False, strip=None, allowlistRegexes=None, blocklistRegexes=None, trueVal='True', falseVal='False', caseSensitive=False, excMsg=None): """Raises ValidationException if value is not an email address. Returns the yesVal or noVal argument, not value. * value (str): The value being...	[ "def", "validateBool", "(", "value", ",", "blank", "=", "False", ",", "strip", "=", "None", ",", "allowlistRegexes", "=", "None", ",", "blocklistRegexes", "=", "None", ",", "trueVal", "=", "'True'", ",", "falseVal", "=", "'False'", ",", "caseSensitive", "=...	54.98	0.006076
def wait_for_event( name, id_list, event_id='id', timeout=300, node='master'): ''' Watch Salt's event bus and block until a condition is met .. versionadded:: 2014.7.0 name An event tag to watch for; supports Reactor-style globbing. id_list A...	[ "def", "wait_for_event", "(", "name", ",", "id_list", ",", "event_id", "=", "'id'", ",", "timeout", "=", "300", ",", "node", "=", "'master'", ")", ":", "ret", "=", "{", "'name'", ":", "name", ",", "'changes'", ":", "{", "}", ",", "'comment'", ":", ...	32.716814	0.000525
def plot(self,init=None): """Interactive plotting of parsing features.""" if not init: init=self init.plotstats={} init.unitfeats=self._getFeatValDict() sels=[] for k,v in sorted(init.unitfeats.items()): for kk,vv in v.items(): sels.append((k,kk)) conditions={'x':[],'y':[]} targets=...	[ "def", "plot", "(", "self", ",", "init", "=", "None", ")", ":", "if", "not", "init", ":", "init", "=", "self", "init", ".", "plotstats", "=", "{", "}", "init", ".", "unitfeats", "=", "self", ".", "_getFeatValDict", "(", ")", "sels", "=", "[", "]"...	25.675676	0.053506
def get_composition(self, composition_id): """Gets the ``Composition`` specified by its ``Id``. arg: composition_id (osid.id.Id): ``Id`` of the ``Composiiton`` return: (osid.repository.Composition) - the composition raise: NotFound - ``composition_id`` not found ...	[ "def", "get_composition", "(", "self", ",", "composition_id", ")", ":", "# Implemented from template for", "# osid.resource.ResourceLookupSession.get_resource", "# NOTE: This implementation currently ignores plenary view", "collection", "=", "JSONClientValidated", "(", "'repository'", ...	51.565217	0.003311
def set_pointing_label(self): """Let the label of the current pointing to the value in the plabel box""" self.pointings[self.current]['label']['text']=w.plabel.get() self.reset()	[ "def", "set_pointing_label", "(", "self", ")", ":", "self", ".", "pointings", "[", "self", ".", "current", "]", "[", "'label'", "]", "[", "'text'", "]", "=", "w", ".", "plabel", ".", "get", "(", ")", "self", ".", "reset", "(", ")" ]	38	0.046392
def getCustomLogger(name, logLevel, logFormat='%(asctime)s %(levelname)-9s:%(name)s:%(module)s:%(funcName)s: %(message)s'): ''' Set up logging :param str name: What log level to set :param str logLevel: What log level to use :param str logFormat: Format string for logging :rtype: logger ''' assert isin...	[ "def", "getCustomLogger", "(", "name", ",", "logLevel", ",", "logFormat", "=", "'%(asctime)s %(levelname)-9s:%(name)s:%(module)s:%(funcName)s: %(message)s'", ")", ":", "assert", "isinstance", "(", "logFormat", ",", "basestring", ")", ",", "(", "\"logFormat must be a string ...	37.068966	0.016319
def hash_hook(path, options): """Hash a hook file""" with open(path, 'r') as f: data = f.read() for key in sorted(iterkeys(options)): data += '\n#{}={}'.format(key, options.get(key)) return hashlib.md5(data.encode()).hexdigest()	[ "def", "hash_hook", "(", "path", ",", "options", ")", ":", "with", "open", "(", "path", ",", "'r'", ")", "as", "f", ":", "data", "=", "f", ".", "read", "(", ")", "for", "key", "in", "sorted", "(", "iterkeys", "(", "options", ")", ")", ":", "dat...	38	0.003676
def drop_duplicates(self, keep="first", inplace=False, **kwargs): """Return DataFrame with duplicate rows removed, optionally only considering certain columns Args: subset : column label or sequence of labels, optional Only consider certain columns for ident...	[ "def", "drop_duplicates", "(", "self", ",", "keep", "=", "\"first\"", ",", "inplace", "=", "False", ",", "", "", "kwargs", ")", ":", "inplace", "=", "validate_bool_kwarg", "(", "inplace", ",", "\"inplace\"", ")", "if", "kwargs", ".", "get", "(", "\"sub...	51.25	0.004789
def move_partition(self, partition, broker_destination): """Move partition to destination broker and adjust replicas.""" self.remove_partition(partition) broker_destination.add_partition(partition)	[ "def", "move_partition", "(", "self", ",", "partition", ",", "broker_destination", ")", ":", "self", ".", "remove_partition", "(", "partition", ")", "broker_destination", ".", "add_partition", "(", "partition", ")" ]	54.5	0.00905
def reviewboard(client, channel, nick, message, matches): """ Automatically responds to reviewboard urls if a user mentions a pattern like cr####. Requires REVIEWBOARD_URL to exist in settings with formattable substring '{review}' """ url_fmt = getattr(settings, 'REVIEWBOARD_URL', 'http://localh...	[ "def", "reviewboard", "(", "client", ",", "channel", ",", "nick", ",", "message", ",", "matches", ")", ":", "url_fmt", "=", "getattr", "(", "settings", ",", "'REVIEWBOARD_URL'", ",", "'http://localhost/{review}'", ")", "reviews", "=", "[", "url_fmt", ".", "f...	52.777778	0.004141
def step(self, con=None, path=None, peer_table=None, local_inv=None): """ Find peers with stale zonefile inventory data, and refresh them. Return True on success Return False on error """ if path is None: path = self.atlasdb_path peer_hostpor...	[ "def", "step", "(", "self", ",", "con", "=", "None", ",", "path", "=", "None", ",", "peer_table", "=", "None", ",", "local_inv", "=", "None", ")", ":", "if", "path", "is", "None", ":", "path", "=", "self", ".", "atlasdb_path", "peer_hostports", "=", ...	38.05	0.007687
def info(self, abspath=True): """ Return a dictionary with configuration information. No guarantee is made about which keys exist. Therefore this function should only be used for testing and debugging. """ logger.debug(str('')) return self._call_and_parse(['info...	[ "def", "info", "(", "self", ",", "abspath", "=", "True", ")", ":", "logger", ".", "debug", "(", "str", "(", "''", ")", ")", "return", "self", ".", "_call_and_parse", "(", "[", "'info'", ",", "'--json'", "]", ",", "abspath", "=", "abspath", ")" ]	38	0.005714
def list_nodes_min(location=None, call=None): ''' Return a list of the VMs that are on the provider. Only a list of VM names, and their state, is returned. This is the minimum amount of information needed to check for existing VMs. ''' if call == 'action': raise SaltCloudSystemExit( ...	[ "def", "list_nodes_min", "(", "location", "=", "None", ",", "call", "=", "None", ")", ":", "if", "call", "==", "'action'", ":", "raise", "SaltCloudSystemExit", "(", "'The list_nodes_min function must be called with -f or --function.'", ")", "ret", "=", "{", "}", "...	35.162162	0.000748
def get_invocation_command_nodefault( toolset, tool, user_provided_command=[], additional_paths=[], path_last=False): """ A helper rule to get the command to invoke some tool. If 'user-provided-command' is not given, tries to find binary named 'tool' in PATH and in the passed 'additional...	[ "def", "get_invocation_command_nodefault", "(", "toolset", ",", "tool", ",", "user_provided_command", "=", "[", "]", ",", "additional_paths", "=", "[", "]", ",", "path_last", "=", "False", ")", ":", "assert", "isinstance", "(", "toolset", ",", "basestring", ")...	47.722222	0.008557
def plot_points(self, ax, legend=None, field=None, field_function=None, undefined=0, **kwargs): """ Plotting, but only for points (as opposed to intervals). """ ys = [iv.top.z for iv in s...	[ "def", "plot_points", "(", "self", ",", "ax", ",", "legend", "=", "None", ",", "field", "=", "None", ",", "field_function", "=", "None", ",", "undefined", "=", "0", ",", "", "", "kwargs", ")", ":", "ys", "=", "[", "iv", ".", "top", ".", "z", ...	27.76	0.009749
def evaluate(self, dataset, metric="auto", missing_value_action='auto', with_predictions=False, options={}, **kwargs): """ Evaluate the model by making predictions of target values and comparing these to actual values. Parameters ---------- dataset : SFr...	[ "def", "evaluate", "(", "self", ",", "dataset", ",", "metric", "=", "\"auto\"", ",", "missing_value_action", "=", "'auto'", ",", "with_predictions", "=", "False", ",", "options", "=", "{", "}", ",", "", "", "kwargs", ")", ":", "if", "missing_value_action...	42.97619	0.003792
def deprecated(message, stacklevel=2): # pragma: no cover """ Raise a `DeprecationWarning` when wrapped function/method is called. Borrowed from https://stackoverflow.com/a/48632082/866026 """ def _decorator(func): @wraps(func) def _func(args, *kwargs): warnings.warn...	[ "def", "deprecated", "(", "message", ",", "stacklevel", "=", "2", ")", ":", "# pragma: no cover", "def", "_decorator", "(", "func", ")", ":", "@", "wraps", "(", "func", ")", "def", "_func", "(", "", "args", ",", "", "*", "kwargs", ")", ":", "warnin...	31	0.001739
def set_pdb_trace(pm=False): """Start the Python debugger when robotframework is running. This makes sure that pdb can use stdin/stdout even though robotframework has redirected I/O. """ import sys import pdb for attr in ("stdin", "stdout", "stderr"): setattr(sys, attr, getattr(sys...	[ "def", "set_pdb_trace", "(", "pm", "=", "False", ")", ":", "import", "sys", "import", "pdb", "for", "attr", "in", "(", "\"stdin\"", ",", "\"stdout\"", ",", "\"stderr\"", ")", ":", "setattr", "(", "sys", ",", "attr", ",", "getattr", "(", "sys", ",", "...	27.6875	0.002183
def replace_namespaced_daemon_set(self, name, namespace, body, **kwargs): """ replace the specified DaemonSet This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True >>> thread = api.replace_namespaced_daemon_set(n...	[ "def", "replace_namespaced_daemon_set", "(", "self", ",", "name", ",", "namespace", ",", "body", ",", "", "", "kwargs", ")", ":", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'async_req'", ")", ":", "retu...	67.6	0.004667
def contains(self, times, keep_inside=True, delta_t=DEFAULT_OBSERVATION_TIME): """ Get a mask array (e.g. a numpy boolean array) of times being inside (or outside) the TMOC instance. Parameters ---------- times : `astropy.time.Time` astropy times to check whe...	[ "def", "contains", "(", "self", ",", "times", ",", "keep_inside", "=", "True", ",", "delta_t", "=", "DEFAULT_OBSERVATION_TIME", ")", ":", "# the requested order for filtering the astropy observations table is more precise than the order", "# of the TimeMoc object", "current_max_o...	46.265306	0.006048
def fetchall_as_dictlist(self, sql: str, args) -> List[Dict[str, Any]]: """Executes SQL; returns list of dictionaries, where each dict contains fieldname/value pairs.""" self.ensure_db_open() cursor = self.db.cursor() self.db_exec_with_cursor(cursor, sql, args) try: ...	[ "def", "fetchall_as_dictlist", "(", "self", ",", "sql", ":", "str", ",", "*", "args", ")", "->", "List", "[", "Dict", "[", "str", ",", "Any", "]", "]", ":", "self", ".", "ensure_db_open", "(", ")", "cursor", "=", "self", ".", "db", ".", "cursor", ...	40.5	0.003017
def variance(self): ''' Compute variance. Returns: variance. ''' alpha = self.__success + self.__default_alpha beta = self.__failure + self.__default_beta try: variance = alpha * beta / ((alpha + beta) ** 2) * (alpha + beta + 1) e...	[ "def", "variance", "(", "self", ")", ":", "alpha", "=", "self", ".", "__success", "+", "self", ".", "__default_alpha", "beta", "=", "self", ".", "__failure", "+", "self", ".", "__default_beta", "try", ":", "variance", "=", "alpha", "*", "beta", "/", "(...	25.4	0.007595
def on_next_request(self, py_db, request): ''' :param NextRequest request: ''' arguments = request.arguments # : :type arguments: NextArguments thread_id = arguments.threadId if py_db.get_use_libraries_filter(): step_cmd_id = CMD_STEP_OVER_MY_CODE el...	[ "def", "on_next_request", "(", "self", ",", "py_db", ",", "request", ")", ":", "arguments", "=", "request", ".", "arguments", "# : :type arguments: NextArguments", "thread_id", "=", "arguments", ".", "threadId", "if", "py_db", ".", "get_use_libraries_filter", "(", ...	33.625	0.003617
def _x_for_spln(x, nx, log_spacing): """ Create vector of values to be used in constructing a spline. Parameters ---------- x : num \| num iterable Resulted values will span the range [min(x), max(x)] nx : int Length of returned vector. log_spacing: bool False - Creat...	[ "def", "_x_for_spln", "(", "x", ",", "nx", ",", "log_spacing", ")", ":", "x", "=", "asarray", "(", "x", ")", "xmin", "=", "min", "(", "x", ")", "xmax", "=", "max", "(", "x", ")", "if", "xmin", "==", "xmax", ":", "return", "asarray", "(", "[", ...	32.054795	0.001244
def _spawn_thread(self, target): """ Create a thread """ t = Thread(target=target) t.daemon = True t.start() return t	[ "def", "_spawn_thread", "(", "self", ",", "target", ")", ":", "t", "=", "Thread", "(", "target", "=", "target", ")", "t", ".", "daemon", "=", "True", "t", ".", "start", "(", ")", "return", "t" ]	25.333333	0.012739
def _checkServer(self, address, port): """Check that the TCP Port we've decided to use for tunnelling is available .. todo :: - update key arguments values and definitions with defaults - update return values and definitions - update usage examples and text ...	[ "def", "_checkServer", "(", "self", ",", "address", ",", "port", ")", ":", "self", ".", "log", ".", "debug", "(", "'starting the ``_checkServer`` method'", ")", "# CREATE A TCP SOCKET", "import", "socket", "s", "=", "socket", ".", "socket", "(", ")", "self", ...	37.16129	0.00423
def execute_file(self, filename): """ Execute a file and provide feedback to the user. :param filename: The pathname of the file to execute (a string). :returns: Whatever the executed file returns on stdout (a string). """ logger.info("Executing file: %s", format_path(fi...	[ "def", "execute_file", "(", "self", ",", "filename", ")", ":", "logger", ".", "info", "(", "\"Executing file: %s\"", ",", "format_path", "(", "filename", ")", ")", "contents", "=", "self", ".", "context", ".", "execute", "(", "filename", ",", "capture", "=...	44.428571	0.00315
def from_client(catalog, client_id, lowcut, highcut, samp_rate, filt_order, length, prepick, swin, process_len=86400, data_pad=90, all_horiz=False, delayed=True, plot=False, debug=0, return_event=False, min_snr=None): """ Generate multiplexed template from FDSN cl...	[ "def", "from_client", "(", "catalog", ",", "client_id", ",", "lowcut", ",", "highcut", ",", "samp_rate", ",", "filt_order", ",", "length", ",", "prepick", ",", "swin", ",", "process_len", "=", "86400", ",", "data_pad", "=", "90", ",", "all_horiz", "=", "...	45.373737	0.000218
def search(cls, session, queries): """Search for a customer given a domain. Args: session (requests.sessions.Session): Authenticated session. queries (helpscout.models.Domain or iter): The queries for the domain. If a ``Domain`` object is provided, it will simply...	[ "def", "search", "(", "cls", ",", "session", ",", "queries", ")", ":", "return", "super", "(", "Customers", ",", "cls", ")", ".", "search", "(", "session", ",", "queries", ",", "SearchCustomer", ")" ]	46.176471	0.002497
def check_service(self, info): """Checks the network for a unique service name, modifying the ServiceInfo passed in if it is not unique.""" now = current_time_millis() next_time = now i = 0 while i < 3: for record in self.cache.entries_with_name(info.type): ...	[ "def", "check_service", "(", "self", ",", "info", ")", ":", "now", "=", "current_time_millis", "(", ")", "next_time", "=", "now", "i", "=", "0", "while", "i", "<", "3", ":", "for", "record", "in", "self", ".", "cache", ".", "entries_with_name", "(", ...	42.121212	0.00211
def roles_dict(path, repo_prefix="", repo_sub_dir=""): """ Return a dict of role names and repo paths. """ exit_if_path_not_found(path) aggregated_roles = {} roles = os.walk(path).next()[1] # First scan all directories for role in roles: for sub_role in roles_dict(path + "/" +...	[ "def", "roles_dict", "(", "path", ",", "repo_prefix", "=", "\"\"", ",", "repo_sub_dir", "=", "\"\"", ")", ":", "exit_if_path_not_found", "(", "path", ")", "aggregated_roles", "=", "{", "}", "roles", "=", "os", ".", "walk", "(", "path", ")", ".", "next", ...	29.92	0.001295
def stack(datasets): """First dataset at the bottom.""" base = datasets[0].copy() for dataset in datasets[1:]: base = base.where(dataset.isnull(), dataset) return base	[ "def", "stack", "(", "datasets", ")", ":", "base", "=", "datasets", "[", "0", "]", ".", "copy", "(", ")", "for", "dataset", "in", "datasets", "[", "1", ":", "]", ":", "base", "=", "base", ".", "where", "(", "dataset", ".", "isnull", "(", ")", "...	31	0.005236
def get_ordered_children(self): """ Return the list of children ordered according to the element structure :return: a list of :class:`Element <hl7apy.core.Element>` """ ordered_keys = self.element.ordered_children if self.element.ordered_children is not None else [] chil...	[ "def", "get_ordered_children", "(", "self", ")", ":", "ordered_keys", "=", "self", ".", "element", ".", "ordered_children", "if", "self", ".", "element", ".", "ordered_children", "is", "not", "None", "else", "[", "]", "children", "=", "[", "self", ".", "in...	43.555556	0.0075
def compile_action_preconditions(self, state: Sequence[tf.Tensor], action: Sequence[tf.Tensor]) -> List[TensorFluent]: '''Compiles the action preconditions given current `state` and `action` fluents. Args: state (Sequence[tf.Tensor]): The current state fluents. ...	[ "def", "compile_action_preconditions", "(", "self", ",", "state", ":", "Sequence", "[", "tf", ".", "Tensor", "]", ",", "action", ":", "Sequence", "[", "tf", ".", "Tensor", "]", ")", "->", "List", "[", "TensorFluent", "]", ":", "scope", "=", "self", "."...	40.75	0.004796
def evaluate_mrz(): """ A script for evaluating the current MRZ recognition pipeline by applying it to a list of files in a directory and reporting how well it went. """ parser = argparse.ArgumentParser(description='Run the MRZ OCR recognition algorithm on the sample test data, reporting the quality sum...	[ "def", "evaluate_mrz", "(", ")", ":", "parser", "=", "argparse", ".", "ArgumentParser", "(", "description", "=", "'Run the MRZ OCR recognition algorithm on the sample test data, reporting the quality summary.'", ")", "parser", ".", "add_argument", "(", "'-j'", ",", "'--jobs...	53.655914	0.003935
def reboot(name, call=None): ''' Reboot a node. CLI Example: .. code-block:: bash salt-cloud -a reboot mymachine ''' instance_id = _get_node(name)['instanceId'] params = {'Action': 'RebootInstances', 'InstanceId.1': instance_id} result = aws.query(params, ...	[ "def", "reboot", "(", "name", ",", "call", "=", "None", ")", ":", "instance_id", "=", "_get_node", "(", "name", ")", "[", "'instanceId'", "]", "params", "=", "{", "'Action'", ":", "'RebootInstances'", ",", "'InstanceId.1'", ":", "instance_id", "}", "result...	23.4	0.001642
def get_mapping(repo, content_type): """ Return an ES mapping for a content type in a repository. :param Repo repo: This git repository. :returns: dict """ try: with open( os.path.join(repo.working_dir, '_mappings', '...	[ "def", "get_mapping", "(", "repo", ",", "content_type", ")", ":", "try", ":", "with", "open", "(", "os", ".", "path", ".", "join", "(", "repo", ".", "working_dir", ",", "'_mappings'", ",", "'%s.json'", "%", "(", "content_type", ",", ")", ")", ",", "'...	28	0.00216
def find(self, query=None, func=None, labels=None, colors=None, pinned=None, archived=None, trashed=False): # pylint: disable=too-many-arguments """Find Notes based on the specified criteria. Args: query (Union[_sre.SRE_Pattern, str, None]): A str or regular expression to match against the ...	[ "def", "find", "(", "self", ",", "query", "=", "None", ",", "func", "=", "None", ",", "labels", "=", "None", ",", "colors", "=", "None", ",", "pinned", "=", "None", ",", "archived", "=", "None", ",", "trashed", "=", "False", ")", ":", "# pylint: di...	51.485714	0.009259
def normalizer(text, exclusion=OPERATIONS_EXCLUSION, lower=True, separate_char='-', **kwargs): """ Clean text string of simbols only alphanumeric chars. """ clean_str = re.sub(r'[^\w{}]'.format( "".join(exclusion)), separate_char, text.strip()) or '' clean_lowerbar = clean_str_without_accent...	[ "def", "normalizer", "(", "text", ",", "exclusion", "=", "OPERATIONS_EXCLUSION", ",", "lower", "=", "True", ",", "separate_char", "=", "'-'", ",", "", "", "kwargs", ")", ":", "clean_str", "=", "re", ".", "sub", "(", "r'[^\\w{}]'", ".", "format", "(", ...	35.875	0.003394
def list_upgrades(refresh=True, **kwargs): ''' Check whether or not an upgrade is available for all packages The ``fromrepo``, ``enablerepo``, and ``disablerepo`` arguments are supported, as used in pkg states, and the ``disableexcludes`` option is also supported. .. versionadded:: 2014.7.0 ...	[ "def", "list_upgrades", "(", "refresh", "=", "True", ",", "", "", "kwargs", ")", ":", "options", "=", "_get_options", "(", "", "", "kwargs", ")", "if", "salt", ".", "utils", ".", "data", ".", "is_true", "(", "refresh", ")", ":", "refresh_db", "("...	28.733333	0.001122
def set_comments(self): """Parses comments and set value.""" try: self.comments = self.soup.find('comments').string except AttributeError: self.comments = None	[ "def", "set_comments", "(", "self", ")", ":", "try", ":", "self", ".", "comments", "=", "self", ".", "soup", ".", "find", "(", "'comments'", ")", ".", "string", "except", "AttributeError", ":", "self", ".", "comments", "=", "None" ]	33.666667	0.009662
def _output_pins(self, pins): """Set multiple pins high or low at once. Pins should be a dict of pin name to pin value (HIGH/True for 1, LOW/False for 0). All provided pins will be set to the given values. """ [self._validate_channel(pin) for pin in pins.keys()] # Set e...	[ "def", "_output_pins", "(", "self", ",", "pins", ")", ":", "[", "self", ".", "_validate_channel", "(", "pin", ")", "for", "pin", "in", "pins", ".", "keys", "(", ")", "]", "# Set each changed pin's bit.", "for", "pin", ",", "value", "in", "iter", "(", "...	42.214286	0.008278
def match_alignment_and_tree_sequence_ids(self, sequence_names, tree): '''Check to make sure that the sequences specified in the alignment and the tree are the same, otherwise raise an Exception detailing the problem for the user to fix Parameters ---------- sequence_nam...	[ "def", "match_alignment_and_tree_sequence_ids", "(", "self", ",", "sequence_names", ",", "tree", ")", ":", "tip_names_count", "=", "{", "}", "for", "t", "in", "tree", ".", "leaf_node_iter", "(", ")", ":", "# replace spaces with underscores as this is how they are given ...	43.5	0.005622
def loads(self, data): """ Deserializes the given byte array into an object and returns it. """ st = BytesIO(data) try: return self.load(st) finally: st.close()	[ "def", "loads", "(", "self", ",", "data", ")", ":", "st", "=", "BytesIO", "(", "data", ")", "try", ":", "return", "self", ".", "load", "(", "st", ")", "finally", ":", "st", ".", "close", "(", ")" ]	24.888889	0.008621
def excepts(cls): """Return tuple of underlying exception classes to trap and wrap. :rtype: ``tuple`` of ``type`` """ if cls._excepts is None: cls._excepts = tuple(cls.translations.keys()) return cls._excepts	[ "def", "excepts", "(", "cls", ")", ":", "if", "cls", ".", "_excepts", "is", "None", ":", "cls", ".", "_excepts", "=", "tuple", "(", "cls", ".", "translations", ".", "keys", "(", ")", ")", "return", "cls", ".", "_excepts" ]	31.75	0.007663
def nl_nlmsg_flags2str(flags, buf, _=None): """Netlink Message Flags Translations. https://github.com/thom311/libnl/blob/libnl3_2_25/lib/msg.c#L664 Positional arguments: flags -- integer. buf -- bytearray(). Keyword arguments: _ -- unused. Returns: Reference to `buf`. """ ...	[ "def", "nl_nlmsg_flags2str", "(", "flags", ",", "buf", ",", "_", "=", "None", ")", ":", "del", "buf", "[", ":", "]", "all_flags", "=", "(", "(", "'REQUEST'", ",", "libnl", ".", "linux_private", ".", "netlink", ".", "NLM_F_REQUEST", ")", ",", "(", "'M...	32.333333	0.00077
def update_alias(self, addressid, data): """Update alias address""" return self.api_call( ENDPOINTS['aliases']['update'], dict(addressid=addressid), body=data)	[ "def", "update_alias", "(", "self", ",", "addressid", ",", "data", ")", ":", "return", "self", ".", "api_call", "(", "ENDPOINTS", "[", "'aliases'", "]", "[", "'update'", "]", ",", "dict", "(", "addressid", "=", "addressid", ")", ",", "body", "=", "data...	34.333333	0.009479
def get_bytes(obj): """ Infers the input type and reads the first 262 bytes, returning a sliced bytearray. Args: obj: path to readable, file, bytes or bytearray. Returns: First 262 bytes of the file content as bytearray type. Raises: TypeError: if obj is not a supporte...	[ "def", "get_bytes", "(", "obj", ")", ":", "try", ":", "obj", "=", "obj", ".", "read", "(", "_NUM_SIGNATURE_BYTES", ")", "except", "AttributeError", ":", "# duck-typing as readable failed - we'll try the other options", "pass", "kind", "=", "type", "(", "obj", ")",...	22.628571	0.001211
def safe_mkdir(directory, clean=False): """Safely create a directory. Ensures a directory is present. If it's not there, it is created. If it is, it's a no-op. If clean is True, ensures the directory is empty. """ if clean: safe_rmtree(directory) try: os.makedirs(directory) except OSError as e:...	[ "def", "safe_mkdir", "(", "directory", ",", "clean", "=", "False", ")", ":", "if", "clean", ":", "safe_rmtree", "(", "directory", ")", "try", ":", "os", ".", "makedirs", "(", "directory", ")", "except", "OSError", "as", "e", ":", "if", "e", ".", "err...	27.076923	0.016484
def leave_group(self, group_alias): """ 退出小组 :param group_alias: 小组ID :return: """ return self.api.req(API_GROUP_GROUP_HOME % group_alias, params={ 'action': 'quit', 'ck': self.api.ck(), })	[ "def", "leave_group", "(", "self", ",", "group_alias", ")", ":", "return", "self", ".", "api", ".", "req", "(", "API_GROUP_GROUP_HOME", "%", "group_alias", ",", "params", "=", "{", "'action'", ":", "'quit'", ",", "'ck'", ":", "self", ".", "api", ".", "...	24.454545	0.014337
def apply_activation( books, x, activation, activation_args=(), activation_kwargs=None): """Returns activation(x, activation_args, *activation_kwargs). This applies the given activation and adds useful summaries specific to the activation. Args: books: The bookkeeper. x: The tens...	[ "def", "apply_activation", "(", "books", ",", "x", ",", "activation", ",", "activation_args", "=", "(", ")", ",", "activation_kwargs", "=", "None", ")", ":", "if", "activation", "is", "None", ":", "return", "x", "if", "activation_kwargs", "is", "None", ":"...	34.142857	0.00678
def get_templates(self): """ Return a list of template_dicts based on the config.yaml in $self.base_path. Keys correspond to templates and values represent further settings regarding each template. A pystache object containing the parsed corresponding mustache file is added to th...	[ "def", "get_templates", "(", "self", ")", ":", "config_path", "=", "rel_to_cwd", "(", "self", ".", "base_path", ",", "'templates'", ",", "'config.yaml'", ")", "templates", "=", "get_yaml_dict", "(", "config_path", ")", "for", "temp", ",", "sub", "in", "templ...	52.214286	0.002688
def _get_outputs(self): """List all the output NDArray. Returns ------- A list of ndarray bound to the heads of executor. """ out_size = mx_uint() handles = ctypes.POINTER(NDArrayHandle)() check_call(_LIB.MXExecutorOutputs(self.handle, ...	[ "def", "_get_outputs", "(", "self", ")", ":", "out_size", "=", "mx_uint", "(", ")", "handles", "=", "ctypes", ".", "POINTER", "(", "NDArrayHandle", ")", "(", ")", "check_call", "(", "_LIB", ".", "MXExecutorOutputs", "(", "self", ".", "handle", ",", "ctyp...	37.357143	0.007463
def miraligner(args): """ Realign BAM hits to miRBAse to get better accuracy and annotation """ hairpin, mirna = _download_mirbase(args) precursors = _read_precursor(args.hairpin, args.sps) matures = _read_mature(args.mirna, args.sps) gtf = _read_gtf(args.gtf) out_dts = [] out_files ...	[ "def", "miraligner", "(", "args", ")", ":", "hairpin", ",", "mirna", "=", "_download_mirbase", "(", "args", ")", "precursors", "=", "_read_precursor", "(", "args", ".", "hairpin", ",", "args", ".", "sps", ")", "matures", "=", "_read_mature", "(", "args", ...	37.57377	0.00085
def parse_napp(napp_id): """Convert a napp_id in tuple with username, napp name and version. Args: napp_id: String with the form 'username/napp[:version]' (version is optional). If no version is found, it will be None. Returns: tuple: A tuple with (username, napp, version...	[ "def", "parse_napp", "(", "napp_id", ")", ":", "# `napp_id` regex, composed by two mandatory parts (username, napp_name)", "# and one optional (version).", "# username and napp_name need to start with a letter, are composed of", "# letters, numbers and uderscores and must have at least three chara...	36.451613	0.000862
def _update_discovery_config(opts): ''' Update discovery config for all instances. :param opts: :return: ''' if opts.get('discovery') not in (None, False): if opts['discovery'] is True: opts['discovery'] = {} discovery_config = {'attempts': 3, 'pause': 5, 'port': 452...	[ "def", "_update_discovery_config", "(", "opts", ")", ":", "if", "opts", ".", "get", "(", "'discovery'", ")", "not", "in", "(", "None", ",", "False", ")", ":", "if", "opts", "[", "'discovery'", "]", "is", "True", ":", "opts", "[", "'discovery'", "]", ...	44	0.004944
def update(self, id, newObj): """Update a object Args: id (int): Target Object ID newObj (object): New object will be merged into original object Returns: Object: Updated object None: If specified object id is not found ...	[ "def", "update", "(", "self", ",", "id", ",", "newObj", ")", ":", "newObj", "=", "self", ".", "validation", "(", "newObj", ")", "for", "obj", "in", "self", ".", "model", ".", "db", ":", "if", "obj", "[", "\"id\"", "]", "!=", "id", ":", "continue"...	31.869565	0.002649
def crypto_core_ed25519_is_valid_point(p): """ Check if ``p`` represents a point on the edwards25519 curve, in canonical form, on the main subgroup, and that the point doesn't have a small order. :param p: a :py:data:`.crypto_core_ed25519_BYTES` long bytes sequence representing a point on...	[ "def", "crypto_core_ed25519_is_valid_point", "(", "p", ")", ":", "ensure", "(", "isinstance", "(", "p", ",", "bytes", ")", "and", "len", "(", "p", ")", "==", "crypto_core_ed25519_BYTES", ",", "'Point must be a crypto_core_ed25519_BYTES long bytes sequence'", ",", "rai...	36.277778	0.001493

def environment(request=None): """ Return ``COMPRESS_ENABLED``, ``SITE_NAME``, and any settings listed in ``ICEKIT_CONTEXT_PROCESSOR_SETTINGS`` as context. """ context = { 'COMPRESS_ENABLED': settings.COMPRESS_ENABLED, 'SITE_NAME': settings.SITE_NAME, } for key in settings.IC...

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def _execute_for_run_dates(self, run_dates, ti_status, executor, pickle_id, start_date, session=None): """ Computes the dag runs and their respective task instances for the given run dates and executes the task instances. Returns a list of execution dates o...

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def get_full_archive_path(self, path): """ Returns the full archive path """ return os.path.join(self.archive_dir, path.lstrip('/'))

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def push(path, keep_symlinks=False, upload_path=None, remove_source=False): ''' WARNING Files pushed to the master will have global read permissions.. Push a file from the minion up to the master, the file will be saved to the salt master in the master's minion files cachedir (defaults to ``/var/ca...

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def verify(self, base_path, update=False): """Verify the submission and return testables that can be executed.""" return self.project.verify_submission(base_path, self, update=update)

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def reject(self, reason): """Rejects the promise with the given reason.""" if self._state != 'pending': raise RuntimeError('Promise is no longer pending.') self.reason = reason self._state = 'rejected' errbacks = self._errbacks self._errbacks = None f...

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def _pirls(self, X, Y, weights): """ Performs stable PIRLS iterations to estimate GAM coefficients Parameters --------- X : array-like of shape (n_samples, m_features) containing input data Y : array-like of shape (n,) containing target data ...

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def sample_bitstrings(self, n_samples): """ Sample bitstrings from the distribution defined by the wavefunction. :param n_samples: The number of bitstrings to sample :return: An array of shape (n_samples, n_qubits) """ possible_bitstrings = np.array(list(itertools.produc...

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def eval_objfn(self): """Compute components of objective function as well as total contribution to objective function. """ fval = self.obfn_f(self.X) gval = self.obfn_g(self.X) obj = fval + gval return (obj, fval, gval)

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def _export_prb_file(recording, file_name, format=None, adjacency_distance=None, graph=False, geometry=True, radius=100, dimensions='all'): '''Exports .prb file Parameters ---------- recording: RecordingExtractor The recording extractor to save probe file from file_name...

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def pull(self): """This coroutine handles the server connection, does a basic parse on the received messages and put them in a queue named events. The controllers pull method will take the messages from that queue. """ self.sock = sockets.Socket() self.sock.settimeo...

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def api_model_exists(restApiId, modelName, region=None, key=None, keyid=None, profile=None): ''' Check to see if the given modelName exists in the given restApiId CLI Example: .. code-block:: bash salt myminion boto_apigateway.api_model_exists restApiId modelName ''' r = describe_api_...

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async def lookup(source_id: str, schema_id: str): """ Create a new schema object from an existing ledger schema :param source_id: Institution's personal identification for the schema :param schema_id: Ledger schema ID for lookup Example: source_id = 'foobar123' n...

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def to_dict(self): """Convert a Traceback into a dictionary representation""" if self.tb_next is None: tb_next = None else: tb_next = self.tb_next.to_dict() code = { 'co_filename': self.tb_frame.f_code.co_filename, 'co_name': self.tb_frame...

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def download_items(cache_fn, start=None): """ Open the `cache_fn` as database and download all not-yet downloaded items. Args: cache_fn (str): Path to the sqlite database. If not exists, it will be created. start (int, default None): If set, start from this sysno. """ wi...

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def reconnect(self): ''' Try to reconnect and re-authenticate with the server. ''' log.debug('Closing the SSH socket.') try: self.ssl_skt.close() except socket.error: log.error('The socket seems to be closed already.') log.debug('Re-opening...

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def from_offset(cls, chunk_type, stream_rdr, offset): """ Return an _IHDRChunk instance containing the image dimensions extracted from the IHDR chunk in *stream* at *offset*. """ px_width = stream_rdr.read_long(offset) px_height = stream_rdr.read_long(offset, 4) r...

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def consume_assignment_list(self): self.expect('(') self.expect('model') """Parses a list of expressions from the tokens""" assignments = [] while True: next_token = self.tokens.consume() self.tokens.add_extra_token(next_token) # push it back ...

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def from_keywords(self, keyword_list, strictness=2, timeout=3): """ Generate a sentence from initial_list. :param list keyword_list: a list of keywords to be included in the sentence. :param int | None strictness: None for highest strictness. 2 or 1 for a less strict POS matching ...

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def tag_secondary_structure(self, force=False): """Tags each `Residue` of the `Polypeptide` with secondary structure. Notes ----- DSSP must be available to call. Check by running `isambard.external_programs.dssp.test_dssp`. If DSSP is not available, please follow instruc...

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def _seqcluster_stats(data, out_dir): """Parse seqcluster output""" name = dd.get_sample_name(data) fn = data.get("seqcluster", {}).get("stat_file", None) if not fn: return None out_file = os.path.join(out_dir, "%s.txt" % name) df = pd.read_csv(fn, sep="\t", names = ["reads", "sample", "...

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def from_attrdict(cls, attrdict: OrderedNamespace) -> object: """ Builds a new instance of the ORM object from values in an attrdict. """ dictionary = attrdict.__dict__ # noinspection PyArgumentList return cls(**dictionary)

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def _parse_meta_info(self, line): """Parse and extract all meta data by looping through the dictionary of meta_info regexs updates self.meta_info Args: line (str): line of the msp file """ if self.mslevel: self.meta_info['ms_level'] = self.mslevel ...

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def hardware_port_group_mode_support_multispeed(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") hardware = ET.SubElement(config, "hardware", xmlns="urn:brocade.com:mgmt:brocade-hardware") port_group = ET.SubElement(hardware, "port-group") name_ke...

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def sort_dependencies(objects): """ Sort a list of instances by their model dependancy graph. This is very similar to Django's sort_dependencies method except for two big differences: 1. We graph dependencies unrelated to natural_key. 2. We take a list of objects, and return a sorted list of o...

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def get_zenith(self, channel=0) -> tuple: """Get the coordinates, in units, of the maximum in a channel. Parameters ---------- channel : int or str (optional) Channel. Default is 0. Returns ------- generator of numbers Coordinates in unit...

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def _get_progress(self): """ Get current progress of emerge. Returns a dict containing current and total value. """ input_data = [] ret = {} # traverse emerge.log from bottom up to get latest information last_lines = self.py3.command_output(["tail", "-50"...

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def item_options(self, **kwargs): """ Handle collection OPTIONS request. Singular route requests are handled a bit differently because singular views may handle POST requests despite being registered as item routes. """ actions = self._item_actions.copy() if self...

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def _slice_weights(self, arr, li, lh): """slice fused rnn weights""" args = {} gate_names = self._gate_names directions = self._directions b = len(directions) p = 0 for layer in range(self._num_layers): for direction in directions: for...

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def get_cgi_parameter_bool_or_default(form: cgi.FieldStorage, key: str, default: bool = None) -> Optional[bool]: """ Extracts a boolean parameter from a CGI form (``"1"`` = ``True``, other string = ``False``, absent/zero-length stri...

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def bar(iter_content, parts, title=''): """ Iterates over the "iter_content" and draws a progress bar to stdout. """ parts = max(float(parts), 1.0) cells = 10 progress = 0 step = cells / parts draw = lambda progress: sys.stdout.write( '\r[{0:10}] {1:.2f}% {2}'.format( '#...

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def ShouldRetry(self, exception): """Returns true if should retry based on the passed-in exception. :param (errors.HTTPFailure instance) exception: :rtype: boolean """ if (self.current_retry_attempt_count < self._max_retry_attempt_count) and self.needsRetry(excepti...

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def boxify(message, border_color=None): """Put a message inside a box. Args: message (unicode): message to decorate. border_color (unicode): name of the color to outline the box with. """ lines = message.split("\n") max_width = max(_visual_width(line) for line in lines) padding...

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def zan(self, id_reply): ''' 先在外部表中更新，然后更新内部表字段的值。有冗余，但是查看的时候避免了联合查询 ''' logger.info('zan: {0}'.format(id_reply)) MReply2User.create_reply(self.userinfo.uid, id_reply) cur_count = MReply2User.get_voter_count(id_reply) if cur_count: MReply.up...

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def cos_open(file, mode='r', buffering=-1, encoding=None, errors=None, newline=None, storage=None, storage_parameters=None, unsecure=None, **kwargs): """ Open file and return a corresponding file object. Equivalent to "io.open" or builtin "open". File can also be binary opene...

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def get_range(self, start=None, stop=None): """Return a RangeMap for the range start to stop. Returns: A RangeMap """ return self.from_iterable(self.ranges(start, stop))

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def argspec_args(argspec, constructor, *args, **kwargs): """ Return (args, kwargs) matching the argspec object :param argspec: argspec to use :type argspec: argspec :param constructor: is it a constructor ? :type constructor: bool :param args: :type args: :param kwargs: :type kw...

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def add_polyhedron(self, neighbors, center, color, opacity=1.0, draw_edges=False, edges_color=[0.0, 0.0, 0.0], edges_linewidth=2): """ Adds a polyhedron. Args: neighbors: Neighbors of the polyhedron (the vertices). center: Th...

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def pretty_str(self, indent=0): """Return a human-readable string representation of this object. Kwargs: indent (int): The amount of spaces to use as indentation. """ spaces = ' ' * indent pretty = spaces + 'class ' + self.name if self.superclasses: ...

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def set_cookie(self, name, value, domain=None, expires=None, path="/", expires_days=None, **kwargs): """Sets the given cookie name/value with the given options. Additional keyword arguments are set on the Cookie.Morsel directly. See http://docs.python.org/library/cook...

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def _get_attributes_from_managed_object(self, managed_object, attr_names): """ Given a kmip.pie object and a list of attribute names, attempt to get all of the existing attribute values from the object. """ attr_factory = attribute_factory.AttributeFactory() retrieved_att...

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def subset_(self, *args): """ Returns a Dataswim instance with a subset data based in positions Select a subset of the main dataframe based on position: ex: ds.subset(0,10) or ds.subset(10) is equivalent: it starts at the first row if only one argument is provided """ ...

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def validateBool(value, blank=False, strip=None, allowlistRegexes=None, blocklistRegexes=None, trueVal='True', falseVal='False', caseSensitive=False, excMsg=None): """Raises ValidationException if value is not an email address. Returns the yesVal or noVal argument, not value. * value (str): The value being...

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def wait_for_event( name, id_list, event_id='id', timeout=300, node='master'): ''' Watch Salt's event bus and block until a condition is met .. versionadded:: 2014.7.0 name An event tag to watch for; supports Reactor-style globbing. id_list A...

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def plot(self,init=None): """Interactive plotting of parsing features.""" if not init: init=self init.plotstats={} init.unitfeats=self._getFeatValDict() sels=[] for k,v in sorted(init.unitfeats.items()): for kk,vv in v.items(): sels.append((k,kk)) conditions={'x':[],'y':[]} targets=...

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def get_composition(self, composition_id): """Gets the ``Composition`` specified by its ``Id``. arg: composition_id (osid.id.Id): ``Id`` of the ``Composiiton`` return: (osid.repository.Composition) - the composition raise: NotFound - ``composition_id`` not found ...

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def set_pointing_label(self): """Let the label of the current pointing to the value in the plabel box""" self.pointings[self.current]['label']['text']=w.plabel.get() self.reset()

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def getCustomLogger(name, logLevel, logFormat='%(asctime)s %(levelname)-9s:%(name)s:%(module)s:%(funcName)s: %(message)s'): ''' Set up logging :param str name: What log level to set :param str logLevel: What log level to use :param str logFormat: Format string for logging :rtype: logger ''' assert isin...

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def hash_hook(path, options): """Hash a hook file""" with open(path, 'r') as f: data = f.read() for key in sorted(iterkeys(options)): data += '\n#{}={}'.format(key, options.get(key)) return hashlib.md5(data.encode()).hexdigest()

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def drop_duplicates(self, keep="first", inplace=False, **kwargs): """Return DataFrame with duplicate rows removed, optionally only considering certain columns Args: subset : column label or sequence of labels, optional Only consider certain columns for ident...

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def move_partition(self, partition, broker_destination): """Move partition to destination broker and adjust replicas.""" self.remove_partition(partition) broker_destination.add_partition(partition)

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def reviewboard(client, channel, nick, message, matches): """ Automatically responds to reviewboard urls if a user mentions a pattern like cr####. Requires REVIEWBOARD_URL to exist in settings with formattable substring '{review}' """ url_fmt = getattr(settings, 'REVIEWBOARD_URL', 'http://localh...

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def step(self, con=None, path=None, peer_table=None, local_inv=None): """ Find peers with stale zonefile inventory data, and refresh them. Return True on success Return False on error """ if path is None: path = self.atlasdb_path peer_hostpor...

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def info(self, abspath=True): """ Return a dictionary with configuration information. No guarantee is made about which keys exist. Therefore this function should only be used for testing and debugging. """ logger.debug(str('')) return self._call_and_parse(['info...

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def list_nodes_min(location=None, call=None): ''' Return a list of the VMs that are on the provider. Only a list of VM names, and their state, is returned. This is the minimum amount of information needed to check for existing VMs. ''' if call == 'action': raise SaltCloudSystemExit( ...

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def get_invocation_command_nodefault( toolset, tool, user_provided_command=[], additional_paths=[], path_last=False): """ A helper rule to get the command to invoke some tool. If 'user-provided-command' is not given, tries to find binary named 'tool' in PATH and in the passed 'additional...

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def plot_points(self, ax, legend=None, field=None, field_function=None, undefined=0, **kwargs): """ Plotting, but only for points (as opposed to intervals). """ ys = [iv.top.z for iv in s...

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def evaluate(self, dataset, metric="auto", missing_value_action='auto', with_predictions=False, options={}, **kwargs): """ Evaluate the model by making predictions of target values and comparing these to actual values. Parameters ---------- dataset : SFr...

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def deprecated(message, stacklevel=2): # pragma: no cover """ Raise a `DeprecationWarning` when wrapped function/method is called. Borrowed from https://stackoverflow.com/a/48632082/866026 """ def _decorator(func): @wraps(func) def _func(*args, **kwargs): warnings.warn...

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def set_pdb_trace(pm=False): """Start the Python debugger when robotframework is running. This makes sure that pdb can use stdin/stdout even though robotframework has redirected I/O. """ import sys import pdb for attr in ("stdin", "stdout", "stderr"): setattr(sys, attr, getattr(sys...

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def replace_namespaced_daemon_set(self, name, namespace, body, **kwargs): """ replace the specified DaemonSet This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True >>> thread = api.replace_namespaced_daemon_set(n...

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def contains(self, times, keep_inside=True, delta_t=DEFAULT_OBSERVATION_TIME): """ Get a mask array (e.g. a numpy boolean array) of times being inside (or outside) the TMOC instance. Parameters ---------- times : `astropy.time.Time` astropy times to check whe...

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def fetchall_as_dictlist(self, sql: str, *args) -> List[Dict[str, Any]]: """Executes SQL; returns list of dictionaries, where each dict contains fieldname/value pairs.""" self.ensure_db_open() cursor = self.db.cursor() self.db_exec_with_cursor(cursor, sql, *args) try: ...

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def variance(self): ''' Compute variance. Returns: variance. ''' alpha = self.__success + self.__default_alpha beta = self.__failure + self.__default_beta try: variance = alpha * beta / ((alpha + beta) ** 2) * (alpha + beta + 1) e...

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def on_next_request(self, py_db, request): ''' :param NextRequest request: ''' arguments = request.arguments # : :type arguments: NextArguments thread_id = arguments.threadId if py_db.get_use_libraries_filter(): step_cmd_id = CMD_STEP_OVER_MY_CODE el...

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def _x_for_spln(x, nx, log_spacing): """ Create vector of values to be used in constructing a spline. Parameters ---------- x : num | num iterable Resulted values will span the range [min(x), max(x)] nx : int Length of returned vector. log_spacing: bool False - Creat...

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def _spawn_thread(self, target): """ Create a thread """ t = Thread(target=target) t.daemon = True t.start() return t

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def _checkServer(self, address, port): """Check that the TCP Port we've decided to use for tunnelling is available .. todo :: - update key arguments values and definitions with defaults - update return values and definitions - update usage examples and text ...

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def execute_file(self, filename): """ Execute a file and provide feedback to the user. :param filename: The pathname of the file to execute (a string). :returns: Whatever the executed file returns on stdout (a string). """ logger.info("Executing file: %s", format_path(fi...

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def from_client(catalog, client_id, lowcut, highcut, samp_rate, filt_order, length, prepick, swin, process_len=86400, data_pad=90, all_horiz=False, delayed=True, plot=False, debug=0, return_event=False, min_snr=None): """ Generate multiplexed template from FDSN cl...

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def search(cls, session, queries): """Search for a customer given a domain. Args: session (requests.sessions.Session): Authenticated session. queries (helpscout.models.Domain or iter): The queries for the domain. If a ``Domain`` object is provided, it will simply...

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def check_service(self, info): """Checks the network for a unique service name, modifying the ServiceInfo passed in if it is not unique.""" now = current_time_millis() next_time = now i = 0 while i < 3: for record in self.cache.entries_with_name(info.type): ...

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def roles_dict(path, repo_prefix="", repo_sub_dir=""): """ Return a dict of role names and repo paths. """ exit_if_path_not_found(path) aggregated_roles = {} roles = os.walk(path).next()[1] # First scan all directories for role in roles: for sub_role in roles_dict(path + "/" +...

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def stack(datasets): """First dataset at the bottom.""" base = datasets[0].copy() for dataset in datasets[1:]: base = base.where(dataset.isnull(), dataset) return base

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def get_ordered_children(self): """ Return the list of children ordered according to the element structure :return: a list of :class:`Element <hl7apy.core.Element>` """ ordered_keys = self.element.ordered_children if self.element.ordered_children is not None else [] chil...

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def compile_action_preconditions(self, state: Sequence[tf.Tensor], action: Sequence[tf.Tensor]) -> List[TensorFluent]: '''Compiles the action preconditions given current `state` and `action` fluents. Args: state (Sequence[tf.Tensor]): The current state fluents. ...

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def evaluate_mrz(): """ A script for evaluating the current MRZ recognition pipeline by applying it to a list of files in a directory and reporting how well it went. """ parser = argparse.ArgumentParser(description='Run the MRZ OCR recognition algorithm on the sample test data, reporting the quality sum...

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def reboot(name, call=None): ''' Reboot a node. CLI Example: .. code-block:: bash salt-cloud -a reboot mymachine ''' instance_id = _get_node(name)['instanceId'] params = {'Action': 'RebootInstances', 'InstanceId.1': instance_id} result = aws.query(params, ...

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def get_mapping(repo, content_type): """ Return an ES mapping for a content type in a repository. :param Repo repo: This git repository. :returns: dict """ try: with open( os.path.join(repo.working_dir, '_mappings', '...

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def find(self, query=None, func=None, labels=None, colors=None, pinned=None, archived=None, trashed=False): # pylint: disable=too-many-arguments """Find Notes based on the specified criteria. Args: query (Union[_sre.SRE_Pattern, str, None]): A str or regular expression to match against the ...

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def normalizer(text, exclusion=OPERATIONS_EXCLUSION, lower=True, separate_char='-', **kwargs): """ Clean text string of simbols only alphanumeric chars. """ clean_str = re.sub(r'[^\w{}]'.format( "".join(exclusion)), separate_char, text.strip()) or '' clean_lowerbar = clean_str_without_accent...

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def list_upgrades(refresh=True, **kwargs): ''' Check whether or not an upgrade is available for all packages The ``fromrepo``, ``enablerepo``, and ``disablerepo`` arguments are supported, as used in pkg states, and the ``disableexcludes`` option is also supported. .. versionadded:: 2014.7.0 ...

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def set_comments(self): """Parses comments and set value.""" try: self.comments = self.soup.find('comments').string except AttributeError: self.comments = None

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def _output_pins(self, pins): """Set multiple pins high or low at once. Pins should be a dict of pin name to pin value (HIGH/True for 1, LOW/False for 0). All provided pins will be set to the given values. """ [self._validate_channel(pin) for pin in pins.keys()] # Set e...

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def match_alignment_and_tree_sequence_ids(self, sequence_names, tree): '''Check to make sure that the sequences specified in the alignment and the tree are the same, otherwise raise an Exception detailing the problem for the user to fix Parameters ---------- sequence_nam...

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def loads(self, data): """ Deserializes the given byte array into an object and returns it. """ st = BytesIO(data) try: return self.load(st) finally: st.close()

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def excepts(cls): """Return tuple of underlying exception classes to trap and wrap. :rtype: ``tuple`` of ``type`` """ if cls._excepts is None: cls._excepts = tuple(cls.translations.keys()) return cls._excepts

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def nl_nlmsg_flags2str(flags, buf, _=None): """Netlink Message Flags Translations. https://github.com/thom311/libnl/blob/libnl3_2_25/lib/msg.c#L664 Positional arguments: flags -- integer. buf -- bytearray(). Keyword arguments: _ -- unused. Returns: Reference to `buf`. """ ...

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def update_alias(self, addressid, data): """Update alias address""" return self.api_call( ENDPOINTS['aliases']['update'], dict(addressid=addressid), body=data)

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def get_bytes(obj): """ Infers the input type and reads the first 262 bytes, returning a sliced bytearray. Args: obj: path to readable, file, bytes or bytearray. Returns: First 262 bytes of the file content as bytearray type. Raises: TypeError: if obj is not a supporte...

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def safe_mkdir(directory, clean=False): """Safely create a directory. Ensures a directory is present. If it's not there, it is created. If it is, it's a no-op. If clean is True, ensures the directory is empty. """ if clean: safe_rmtree(directory) try: os.makedirs(directory) except OSError as e:...

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def leave_group(self, group_alias): """ 退出小组 :param group_alias: 小组ID :return: """ return self.api.req(API_GROUP_GROUP_HOME % group_alias, params={ 'action': 'quit', 'ck': self.api.ck(), })

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def apply_activation( books, x, activation, activation_args=(), activation_kwargs=None): """Returns activation(x, *activation_args, **activation_kwargs). This applies the given activation and adds useful summaries specific to the activation. Args: books: The bookkeeper. x: The tens...

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def get_templates(self): """ Return a list of template_dicts based on the config.yaml in $self.base_path. Keys correspond to templates and values represent further settings regarding each template. A pystache object containing the parsed corresponding mustache file is added to th...

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def _get_outputs(self): """List all the output NDArray. Returns ------- A list of ndarray bound to the heads of executor. """ out_size = mx_uint() handles = ctypes.POINTER(NDArrayHandle)() check_call(_LIB.MXExecutorOutputs(self.handle, ...

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def miraligner(args): """ Realign BAM hits to miRBAse to get better accuracy and annotation """ hairpin, mirna = _download_mirbase(args) precursors = _read_precursor(args.hairpin, args.sps) matures = _read_mature(args.mirna, args.sps) gtf = _read_gtf(args.gtf) out_dts = [] out_files ...

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def parse_napp(napp_id): """Convert a napp_id in tuple with username, napp name and version. Args: napp_id: String with the form 'username/napp[:version]' (version is optional). If no version is found, it will be None. Returns: tuple: A tuple with (username, napp, version...

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def _update_discovery_config(opts): ''' Update discovery config for all instances. :param opts: :return: ''' if opts.get('discovery') not in (None, False): if opts['discovery'] is True: opts['discovery'] = {} discovery_config = {'attempts': 3, 'pause': 5, 'port': 452...

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def update(self, id, newObj): """Update a object Args: id (int): Target Object ID newObj (object): New object will be merged into original object Returns: Object: Updated object None: If specified object id is not found ...

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def crypto_core_ed25519_is_valid_point(p): """ Check if ``p`` represents a point on the edwards25519 curve, in canonical form, on the main subgroup, and that the point doesn't have a small order. :param p: a :py:data:`.crypto_core_ed25519_BYTES` long bytes sequence representing a point on...

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