kejian/codesearchnet-python-pep8-full · Datasets at Hugging Face

text stringlengths 75 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 0.18
def execute(helper, config, args): """ dump command dumps things """ env = parse_env_config(config, args.environment) option_settings = env.get('option_settings', {}) settings = parse_option_settings(option_settings) for setting in settings: out(str(setting))	[ "def", "execute", "(", "helper", ",", "config", ",", "args", ")", ":", "env", "=", "parse_env_config", "(", "config", ",", "args", ".", "environment", ")", "option_settings", "=", "env", ".", "get", "(", "'option_settings'", ",", "{", "}", ")", "settings...	31.888889	0.00339
def create(self, dataset_id): """ Create a dataset in Google BigQuery Parameters ---------- dataset : str Name of dataset to be written """ from google.cloud.bigquery import Dataset if self.exists(dataset_id): raise DatasetCreationError( ...	[ "def", "create", "(", "self", ",", "dataset_id", ")", ":", "from", "google", ".", "cloud", ".", "bigquery", "import", "Dataset", "if", "self", ".", "exists", "(", "dataset_id", ")", ":", "raise", "DatasetCreationError", "(", "\"Dataset {0} already \"", "\"exis...	27.541667	0.002924
def add_content(self, content): """ Add content to this fragment. `content` is a Unicode string, HTML to append to the body of the fragment. It must not contain a ``<body>`` tag, or otherwise assume that it is the only content on the page. """ assert isinstance(...	[ "def", "add_content", "(", "self", ",", "content", ")", ":", "assert", "isinstance", "(", "content", ",", "six", ".", "text_type", ")", "self", ".", "content", "+=", "content" ]	36.6	0.005333
def compute_score_threshold(average_window_readcount, island_enriched_threshold, gap_contribution, boundary_contribution, genome_length_in_bins): # type: (float, int, float, float, float) -> float """ What does island_expect...	[ "def", "compute_score_threshold", "(", "average_window_readcount", ",", "island_enriched_threshold", ",", "gap_contribution", ",", "boundary_contribution", ",", "genome_length_in_bins", ")", ":", "# type: (float, int, float, float, float) -> float", "required_p_value", "=", "poisso...	39.586207	0.000425
def show_xys(self, xs, ys)->None: "Show the `xs` (inputs) and `ys` (targets)." from IPython.display import display, HTML items,names = [], xs[0].names + ['target'] for i, (x,y) in enumerate(zip(xs,ys)): res = [] cats = x.cats if len(x.cats.size()) > 0 else [] ...	[ "def", "show_xys", "(", "self", ",", "xs", ",", "ys", ")", "->", "None", ":", "from", "IPython", ".", "display", "import", "display", ",", "HTML", "items", ",", "names", "=", "[", "]", ",", "xs", "[", "0", "]", ".", "names", "+", "[", "'target'",...	48.375	0.012674
def do_thaw(client, args): """Execute the thaw operation, pulling in an actual Vault client if neccesary""" vault_client = None if args.gpg_pass_path: vault_client = client.connect(args) aomi.filez.thaw(vault_client, args.icefile, args) sys.exit(0)	[ "def", "do_thaw", "(", "client", ",", "args", ")", ":", "vault_client", "=", "None", "if", "args", ".", "gpg_pass_path", ":", "vault_client", "=", "client", ".", "connect", "(", "args", ")", "aomi", ".", "filez", ".", "thaw", "(", "vault_client", ",", ...	30.333333	0.003559
def periodogram(self): """An alias to :class:`~spectrum.periodogram.Periodogram` The parameters are extracted from the attributes. Relevant attributes ares :attr:`window`, attr:`sampling`, attr:`NFFT`, attr:`scale_by_freq`, :attr:`detrend`. .. plot:: :width: 80% ...	[ "def", "periodogram", "(", "self", ")", ":", "from", ".", "periodogram", "import", "speriodogram", "psd", "=", "speriodogram", "(", "self", ".", "data", ",", "window", "=", "self", ".", "window", ",", "sampling", "=", "self", ".", "sampling", ",", "NFFT"...	38.136364	0.00814
def from_progression_shorthand(self, shorthand, key='C'): """Empty the container and add the notes described in the progressions shorthand (eg. 'IIm6', 'V7', etc). See mingus.core.progressions for all the recognized format. Example: >>> NoteContainer().from_progression_shorthan...	[ "def", "from_progression_shorthand", "(", "self", ",", "shorthand", ",", "key", "=", "'C'", ")", ":", "self", ".", "empty", "(", ")", "chords", "=", "progressions", ".", "to_chords", "(", "shorthand", ",", "key", ")", "# warning Throw error, not a valid shorthan...	32	0.003195
def lines(start=None, end=None, reverse=False, selection=False): """Iterate lines in range. Args: start: Starting address, start of IDB if `None`. end: End address, end of IDB if `None`. reverse: Set to true to iterate in reverse order. selection: If set to True, replaces start ...	[ "def", "lines", "(", "start", "=", "None", ",", "end", "=", "None", ",", "reverse", "=", "False", ",", "selection", "=", "False", ")", ":", "if", "selection", ":", "start", ",", "end", "=", "get_selection", "(", ")", "else", ":", "start", ",", "end...	28.931034	0.002307
def apply_filters(stopwords, language): """ Apply registered filters to stopwords :param stopwords: list :param language: string :return: filtered stopwords """ if language in _filters: for func in _filters[language]: stopwords = func(stopwords) for func in _filters[...	[ "def", "apply_filters", "(", "stopwords", ",", "language", ")", ":", "if", "language", "in", "_filters", ":", "for", "func", "in", "_filters", "[", "language", "]", ":", "stopwords", "=", "func", "(", "stopwords", ")", "for", "func", "in", "_filters", "[...	25.333333	0.002538
def fast_group_adder(wires_to_add, reducer=wallace_reducer, final_adder=kogge_stone): """ A generalization of the carry save adder, this is designed to add many numbers together in a both area and time efficient manner. Uses a tree reducer to achieve this performance :param [WireVector] wires_to_a...	[ "def", "fast_group_adder", "(", "wires_to_add", ",", "reducer", "=", "wallace_reducer", ",", "final_adder", "=", "kogge_stone", ")", ":", "import", "math", "longest_wire_len", "=", "max", "(", "len", "(", "w", ")", "for", "w", "in", "wires_to_add", ")", "res...	39.36	0.003968
def get_viewer(self, v_id, viewer_class=None, width=512, height=512, force_new=False): """ Get an existing viewer by viewer id. If the viewer does not yet exist, make a new one. """ if not force_new: try: return self.viewers[v_id] ...	[ "def", "get_viewer", "(", "self", ",", "v_id", ",", "viewer_class", "=", "None", ",", "width", "=", "512", ",", "height", "=", "512", ",", "force_new", "=", "False", ")", ":", "if", "not", "force_new", ":", "try", ":", "return", "self", ".", "viewers...	33.909091	0.003911
def find_library_darwin(cls): """Loads the SEGGER DLL from the installed applications. This method accounts for the all the different ways in which the DLL may be installed depending on the version of the DLL. Always uses the first directory found. SEGGER's DLL is installed in...	[ "def", "find_library_darwin", "(", "cls", ")", ":", "dll", "=", "Library", ".", "JLINK_SDK_NAME", "root", "=", "os", ".", "path", ".", "join", "(", "'/'", ",", "'Applications'", ",", "'SEGGER'", ")", "if", "not", "os", ".", "path", ".", "isdir", "(", ...	43.021277	0.000967
def write_zip(file_path, data, properties): """ Write custom zip file to the file path :param file_path: the file to which to write the zip file :param data: the data to write to the file; may be None :param properties: the properties to write to the file; may be None The p...	[ "def", "write_zip", "(", "file_path", ",", "data", ",", "properties", ")", ":", "with", "open", "(", "file_path", ",", "\"w+b\"", ")", "as", "fp", ":", "write_zip_fp", "(", "fp", ",", "data", ",", "properties", ")" ]	35.933333	0.001808
def global_request(self, kind, data=None, wait=True): """ Make a global request to the remote host. These are normally extensions to the SSH2 protocol. :param str kind: name of the request. :param tuple data: an optional tuple containing additional data to attach to...	[ "def", "global_request", "(", "self", ",", "kind", ",", "data", "=", "None", ",", "wait", "=", "True", ")", ":", "if", "wait", ":", "self", ".", "completion_event", "=", "threading", ".", "Event", "(", ")", "m", "=", "Message", "(", ")", "m", ".", ...	36.055556	0.0015
def validate(self, object): """Validate an object against the schema. This function just passes if the schema matches the object. If the object does not match the schema, a ValidationException is raised. This error allows debugging. """ resolver=self.get_resolver() ...	[ "def", "validate", "(", "self", ",", "object", ")", ":", "resolver", "=", "self", ".", "get_resolver", "(", ")", "jsonschema", ".", "validate", "(", "object", ",", "self", ".", "get_schema", "(", ")", ",", "resolver", "=", "resolver", ")" ]	42.222222	0.010309
def add_toc_entry(self, title, level, slide_number): """ Adds a new entry to current presentation Table of Contents. """ self.__toc.append({'title': title, 'number': slide_number, 'level': level})	[ "def", "add_toc_entry", "(", "self", ",", "title", ",", "level", ",", "slide_number", ")", ":", "self", ".", "__toc", ".", "append", "(", "{", "'title'", ":", "title", ",", "'number'", ":", "slide_number", ",", "'level'", ":", "level", "}", ")" ]	48.6	0.008097
def gcc_checker(code, filename_suffix, arguments, working_directory): """Return checker.""" run = run_in_subprocess(code, filename_suffix, arguments + ['-pedantic', '-fsyntax-only'], working_directory=working_directory) def...	[ "def", "gcc_checker", "(", "code", ",", "filename_suffix", ",", "arguments", ",", "working_directory", ")", ":", "run", "=", "run_in_subprocess", "(", "code", ",", "filename_suffix", ",", "arguments", "+", "[", "'-pedantic'", ",", "'-fsyntax-only'", "]", ",", ...	35.65	0.001366
def create_cert_signed_certificate(self, sign_cert_str, sign_key_str, request_cert_str, hash_alg="sha256", valid_from=0, valid_to=315360000, sn=1, passphrase=None): """ Will sign a certi...	[ "def", "create_cert_signed_certificate", "(", "self", ",", "sign_cert_str", ",", "sign_key_str", ",", "request_cert_str", ",", "hash_alg", "=", "\"sha256\"", ",", "valid_from", "=", "0", ",", "valid_to", "=", "315360000", ",", "sn", "=", "1", ",", "passphrase", ...	55.016667	0.001488
def add_item(self, host, key, value, clock=None, state=0): """ Add a single item into DataContainer :host: hostname to which item will be linked to :key: item key as defined in Zabbix :value: item value :clock: timestemp as integer. If not provided self.clock()) will be ...	[ "def", "add_item", "(", "self", ",", "host", ",", "key", ",", "value", ",", "clock", "=", "None", ",", "state", "=", "0", ")", ":", "if", "clock", "is", "None", ":", "clock", "=", "self", ".", "clock", "if", "self", ".", "_config", ".", "data_typ...	43.272727	0.004111
def dedent(text): """Equivalent of textwrap.dedent that ignores unindented first line. This means it will still dedent strings like: '''foo is a bar ''' For use in wrap_paragraphs. """ if text.startswith('\n'): # text starts with blank line, don't ignore the first line ...	[ "def", "dedent", "(", "text", ")", ":", "if", "text", ".", "startswith", "(", "'\\n'", ")", ":", "# text starts with blank line, don't ignore the first line", "return", "textwrap", ".", "dedent", "(", "text", ")", "# split first line", "splits", "=", "text", ".", ...	24.2	0.00318
def authenticate(org): """ Authenticate with GitHub via SSH if possible Otherwise authenticate via HTTPS Returns an authenticated User """ with ProgressBar(_("Authenticating")) as progress_bar: user = _authenticate_ssh(org) progress_bar.stop() if user is None: ...	[ "def", "authenticate", "(", "org", ")", ":", "with", "ProgressBar", "(", "_", "(", "\"Authenticating\"", ")", ")", "as", "progress_bar", ":", "user", "=", "_authenticate_ssh", "(", "org", ")", "progress_bar", ".", "stop", "(", ")", "if", "user", "is", "N...	30.533333	0.002119
def saveWallet(self, wallet, fpath): """Save wallet into specified localtion. Returns the canonical path for the ``fpath`` where ``wallet`` has been stored. Error cases: - ``fpath`` is not inside the keyrings base dir - ValueError raised - directory part of ``fp...	[ "def", "saveWallet", "(", "self", ",", "wallet", ",", "fpath", ")", ":", "if", "not", "fpath", ":", "raise", "ValueError", "(", "\"empty path\"", ")", "_fpath", "=", "self", ".", "_normalize", "(", "fpath", ")", "_dpath", "=", "_fpath", ".", "parent", ...	34.181818	0.001293
def _apply_Create(self, change): '''A record from change must be created. :param change: a change object :type change: octodns.record.Change :type return: void ''' ar = _AzureRecord(self._resource_group, change.new) create = self._dns_client.record_...	[ "def", "_apply_Create", "(", "self", ",", "change", ")", ":", "ar", "=", "_AzureRecord", "(", "self", ".", "_resource_group", ",", "change", ".", "new", ")", "create", "=", "self", ".", "_dns_client", ".", "record_sets", ".", "create_or_update", "create", ...	35.222222	0.003072
def catch_raise_api_exception(): """Context manager that translates upstream API exceptions.""" try: yield except _ApiException as exc: detail = None fields = None if exc.body: try: # pylint: disable=no-member data = json.loads(exc...	[ "def", "catch_raise_api_exception", "(", ")", ":", "try", ":", "yield", "except", "_ApiException", "as", "exc", ":", "detail", "=", "None", "fields", "=", "None", "if", "exc", ".", "body", ":", "try", ":", "# pylint: disable=no-member", "data", "=", "json", ...	28.363636	0.003101
def smeft_evolve(C_in, scale_in, scale_out, newphys=True, kwargs): """Solve the SMEFT RGEs by numeric integration. Input C_in and output C_out are dictionaries of arrays.""" sol = _smeft_evolve(C_in, scale_in, scale_out, newphys=newphys, kwargs) return C_array2dict(sol.y[:, -1].view(complex))	[ "def", "smeft_evolve", "(", "C_in", ",", "scale_in", ",", "scale_out", ",", "newphys", "=", "True", ",", "", "", "kwargs", ")", ":", "sol", "=", "_smeft_evolve", "(", "C_in", ",", "scale_in", ",", "scale_out", ",", "newphys", "=", "newphys", ",", "*"...	51.5	0.003185
def set_sleep(minutes): ''' Sets the amount of idle time until the machine sleeps. Sets the same value for Computer, Display, and Hard Disk. Pass "Never" or "Off" for computers that should never sleep. :param minutes: Can be an integer between 1 and 180 or "Never" or "Off" :ptype: int, str ...	[ "def", "set_sleep", "(", "minutes", ")", ":", "value", "=", "_validate_sleep", "(", "minutes", ")", "cmd", "=", "'systemsetup -setsleep {0}'", ".", "format", "(", "value", ")", "salt", ".", "utils", ".", "mac_utils", ".", "execute_return_success", "(", "cmd", ...	28.166667	0.001144
def load_child_sections_for_section(context, section, count=None): ''' Returns all child sections If the `locale_code` in the context is not the main language, it will return the translations of the live articles. ''' page = section.get_main_language_page() locale = context.get('locale_code'...	[ "def", "load_child_sections_for_section", "(", "context", ",", "section", ",", "count", "=", "None", ")", ":", "page", "=", "section", ".", "get_main_language_page", "(", ")", "locale", "=", "context", ".", "get", "(", "'locale_code'", ")", "qs", "=", "Secti...	32.6	0.001988
def str_(name): """Return the string representation of the given 'name'. If it is a bytes object, it will be converted into str. If it is a str object, it will simply be resurned.""" if isinstance(name, bytes) and not isinstance(name, str): return name.decode('utf8') else: return name	[ "def", "str_", "(", "name", ")", ":", "if", "isinstance", "(", "name", ",", "bytes", ")", "and", "not", "isinstance", "(", "name", ",", "str", ")", ":", "return", "name", ".", "decode", "(", "'utf8'", ")", "else", ":", "return", "name" ]	37	0.013201
def _file_lines(self, filename): """Get lines for filename, caching opened files.""" try: return self._file_lines_cache[filename] except KeyError: if os.path.isfile(filename): with open(filename) as python_file: self._file_lines_cache[f...	[ "def", "_file_lines", "(", "self", ",", "filename", ")", ":", "try", ":", "return", "self", ".", "_file_lines_cache", "[", "filename", "]", "except", "KeyError", ":", "if", "os", ".", "path", ".", "isfile", "(", "filename", ")", ":", "with", "open", "(...	39	0.004175
def append(self, cb): """Adds a callback.""" self.callbacks.append(cb.callb) self.monitor = self.monitor \| cb.callb.bit yield from self.pi._pigpio_aio_command(_PI_CMD_NB, self.handle, self.monitor)	[ "def", "append", "(", "self", ",", "cb", ")", ":", "self", ".", "callbacks", ".", "append", "(", "cb", ".", "callb", ")", "self", ".", "monitor", "=", "self", ".", "monitor", "\|", "cb", ".", "callb", ".", "bit", "yield", "from", "self", ".", "pi"...	38.714286	0.00722
def cli_parse(file_path, sa, nameservers, dns_timeout, parallel=False): """Separated this function for multiprocessing""" try: file_results = parse_report_file(file_path, nameservers=nameservers, dns_timeout=dns_timeout, ...	[ "def", "cli_parse", "(", "file_path", ",", "sa", ",", "nameservers", ",", "dns_timeout", ",", "parallel", "=", "False", ")", ":", "try", ":", "file_results", "=", "parse_report_file", "(", "file_path", ",", "nameservers", "=", "nameservers", ",", "dns_timeout"...	42.333333	0.001541
def render_to_response(self, context, **response_kwargs): """ Overloaded to deal with _format arguments. """ # should we actually render in json? if '_format' in self.request.GET and self.request.GET['_format'] == 'json': return JsonResponse(self.as_json(context), saf...	[ "def", "render_to_response", "(", "self", ",", "context", ",", "", "", "response_kwargs", ")", ":", "# should we actually render in json?", "if", "'_format'", "in", "self", ".", "request", ".", "GET", "and", "self", ".", "request", ".", "GET", "[", "'_format...	40	0.006667
def add_dashboard_panel(self, dashboard, name, panel_type, metrics, scope=None, sort_by=None, limit=None, layout=None): """Description Adds a panel to the dashboard. A panel can be a time series, or a top chart (i.e. bar chart), or a number panel. Arguments - **dashboard...	[ "def", "add_dashboard_panel", "(", "self", ",", "dashboard", ",", "name", ",", "panel_type", ",", "metrics", ",", "scope", "=", "None", ",", "sort_by", "=", "None", ",", "limit", "=", "None", ",", "layout", "=", "None", ")", ":", "panel_configuration", "...	49.457143	0.00269
def _CheckType(value, check_type, name, allow_none=True): """Check that the type of an object is acceptable. Args: value: The object whose type is to be checked. check_type: The type that the object must be an instance of. name: Name of the object, to be placed in any error messages. allow_none: Tr...	[ "def", "_CheckType", "(", "value", ",", "check_type", ",", "name", ",", "allow_none", "=", "True", ")", ":", "if", "value", "is", "None", "and", "allow_none", ":", "return", "if", "not", "isinstance", "(", "value", ",", "check_type", ")", ":", "raise", ...	35.5	0.006861
def copies(self): """ All test case copies created by the user """ import nitrate if self._copies is None: log.info(u"Searching for cases copied by {0}".format(self.user)) self._copies = [ case for case in nitrate.TestCase.search( autho...	[ "def", "copies", "(", "self", ")", ":", "import", "nitrate", "if", "self", ".", "_copies", "is", "None", ":", "log", ".", "info", "(", "u\"Searching for cases copied by {0}\"", ".", "format", "(", "self", ".", "user", ")", ")", "self", ".", "_copies", "=...	44.583333	0.003663
def evaluateCommand(self, cmd): """ cppcheck always return 0, unless a special parameter is given """ for msg in self.flunkingIssues: if self.counts[msg] != 0: return FAILURE if self.getProperty('cppcheck-total') != 0: return WARNINGS return SUCCES...	[ "def", "evaluateCommand", "(", "self", ",", "cmd", ")", ":", "for", "msg", "in", "self", ".", "flunkingIssues", ":", "if", "self", ".", "counts", "[", "msg", "]", "!=", "0", ":", "return", "FAILURE", "if", "self", ".", "getProperty", "(", "'cppcheck-to...	39.25	0.006231
def log_config(verbose: bool) -> dict: """ Setup default config. for dictConfig. :param verbose: level: DEBUG if True, INFO if False :return: dict suitable for ``logging.config.dictConfig`` """ log_level = 'DEBUG' if verbose else 'INFO' return { 'version': 1, 'disable_existin...	[ "def", "log_config", "(", "verbose", ":", "bool", ")", "->", "dict", ":", "log_level", "=", "'DEBUG'", "if", "verbose", "else", "'INFO'", "return", "{", "'version'", ":", "1", ",", "'disable_existing_loggers'", ":", "False", ",", "'formatters'", ":", "{", ...	32.27027	0.000406
def format_citations(zid, url='https://zenodo.org/', hits=10, tag_prefix='v'): """Query and format a citations page from Zenodo entries Parameters ---------- zid : `int`, `str` the Zenodo ID of the target record url : `str`, optional the base URL of the Zenodo host, defaults to ``h...	[ "def", "format_citations", "(", "zid", ",", "url", "=", "'https://zenodo.org/'", ",", "hits", "=", "10", ",", "tag_prefix", "=", "'v'", ")", ":", "# query for metadata", "url", "=", "(", "'{url}/api/records/?'", "'page=1&'", "'size={hits}&'", "'q=conceptrecid:\"{id}...	30.4	0.000708
def get_schemas(cls, schema_types=None, sort=True): """ Get schemas by type. If ``schema_type`` is None, return all schemas :param schema_types: list of schema types :type schema_types: list or None :param bool sort: sort by name :return: list of schemas :rtype: ...	[ "def", "get_schemas", "(", "cls", ",", "schema_types", "=", "None", ",", "sort", "=", "True", ")", ":", "result", "=", "filter", "(", "lambda", "x", ":", "not", "x", ".", "is_inline_array", ",", "cls", ".", "_schemas", ".", "values", "(", ")", ")", ...	37.625	0.003241
def p_class_name(p): '''class_name : namespace_name \| NS_SEPARATOR namespace_name \| NAMESPACE NS_SEPARATOR namespace_name''' if len(p) == 2: p[0] = p[1] elif len(p) == 3: p[0] = p[1] + p[2] else: p[0] = p[1] + p[2] + p[3]	[ "def", "p_class_name", "(", "p", ")", ":", "if", "len", "(", "p", ")", "==", "2", ":", "p", "[", "0", "]", "=", "p", "[", "1", "]", "elif", "len", "(", "p", ")", "==", "3", ":", "p", "[", "0", "]", "=", "p", "[", "1", "]", "+", "p", ...	28.8	0.003367
def sigStrToKwArgsDict(checkFuncSig): """ Take a check function signature (string), and parse it to get a dict of the keyword args and their values. """ p1 = checkFuncSig.find('(') p2 = checkFuncSig.rfind(')') assert p1 > 0 and p2 > 0 and p2 > p1, "Invalid signature: "+checkFuncSig argParts ...	[ "def", "sigStrToKwArgsDict", "(", "checkFuncSig", ")", ":", "p1", "=", "checkFuncSig", ".", "find", "(", "'('", ")", "p2", "=", "checkFuncSig", ".", "rfind", "(", "')'", ")", "assert", "p1", ">", "0", "and", "p2", ">", "0", "and", "p2", ">", "p1", ...	46.956522	0.008167
def media_new_callbacks(self, open_cb, read_cb, seek_cb, close_cb, opaque): '''Create a media with custom callbacks to read the data from. @param open_cb: callback to open the custom bitstream input media. @param read_cb: callback to read data (must not be NULL). @param seek_cb: callback...	[ "def", "media_new_callbacks", "(", "self", ",", "open_cb", ",", "read_cb", ",", "seek_cb", ",", "close_cb", ",", "opaque", ")", ":", "return", "libvlc_media_new_callbacks", "(", "self", ",", "open_cb", ",", "read_cb", ",", "seek_cb", ",", "close_cb", ",", "o...	108.272727	0.003331
def _load_pretrained_tok2vec(nlp, loc): """Load pre-trained weights for the 'token-to-vector' part of the component models, which is typically a CNN. See 'spacy pretrain'. Experimental. """ with loc.open("rb") as file_: weights_data = file_.read() loaded = [] for name, component in nlp.p...	[ "def", "_load_pretrained_tok2vec", "(", "nlp", ",", "loc", ")", ":", "with", "loc", ".", "open", "(", "\"rb\"", ")", "as", "file_", ":", "weights_data", "=", "file_", ".", "read", "(", ")", "loaded", "=", "[", "]", "for", "name", ",", "component", "i...	41.833333	0.001949
def ensure_mingw_drive(win32_path): r""" replaces windows drives with mingw style drives Args: win32_path (str): CommandLine: python -m utool.util_path --test-ensure_mingw_drive Example: >>> # DISABLE_DOCTEST >>> from utool.util_path import * # NOQA >>> win32_...	[ "def", "ensure_mingw_drive", "(", "win32_path", ")", ":", "win32_drive", ",", "_path", "=", "splitdrive", "(", "win32_path", ")", "mingw_drive", "=", "'/'", "+", "win32_drive", "[", ":", "-", "1", "]", ".", "lower", "(", ")", "mingw_path", "=", "mingw_driv...	28.904762	0.001595
def OnClose(self, event): """Program exit event handler""" # If changes have taken place save of old grid if undo.stack().haschanged(): save_choice = self.interfaces.get_save_request_from_user() if save_choice is None: # Cancelled close operation ...	[ "def", "OnClose", "(", "self", ",", "event", ")", ":", "# If changes have taken place save of old grid", "if", "undo", ".", "stack", "(", ")", ".", "haschanged", "(", ")", ":", "save_choice", "=", "self", ".", "interfaces", ".", "get_save_request_from_user", "("...	28.175	0.001715
def n_neurites(neurites, neurite_type=NeuriteType.all): '''Number of neurites in a collection of neurites''' return sum(1 for _ in iter_neurites(neurites, filt=is_type(neurite_type)))	[ "def", "n_neurites", "(", "neurites", ",", "neurite_type", "=", "NeuriteType", ".", "all", ")", ":", "return", "sum", "(", "1", "for", "_", "in", "iter_neurites", "(", "neurites", ",", "filt", "=", "is_type", "(", "neurite_type", ")", ")", ")" ]	63	0.005236
def device_type_from_string(cl_device_type_str): """Converts values like ``gpu`` to a pyopencl device type string. Supported values are: ``accelerator``, ``cpu``, ``custom``, ``gpu``. If ``all`` is given, None is returned. Args: cl_device_type_str (str): The string we want to convert to a device t...	[ "def", "device_type_from_string", "(", "cl_device_type_str", ")", ":", "cl_device_type_str", "=", "cl_device_type_str", ".", "upper", "(", ")", "if", "hasattr", "(", "cl", ".", "device_type", ",", "cl_device_type_str", ")", ":", "return", "getattr", "(", "cl", "...	37.4	0.005217
def new_geom(geom_type, size, pos=(0, 0, 0), rgba=RED, group=0, kwargs): """ Creates a geom element with attributes specified by @kwargs. Args: geom_type (str): type of the geom. see all types here: http://mujoco.org/book/modeling.html#geom size: geom size parameters. ...	[ "def", "new_geom", "(", "geom_type", ",", "size", ",", "pos", "=", "(", "0", ",", "0", ",", "0", ")", ",", "rgba", "=", "RED", ",", "group", "=", "0", ",", "", "", "kwargs", ")", ":", "kwargs", "[", "\"type\"", "]", "=", "str", "(", "geom_t...	39.7	0.00123
def geo(self): """ General image geo information. Returns ------- dict a dictionary with keys `xmin`, `xmax`, `xres`, `rotation_x`, `ymin`, `ymax`, `yres`, `rotation_y` """ out = dict(zip(['xmin', 'xres', 'rotation_x', 'ymax', 'rotation_y', 'yres'], ...	[ "def", "geo", "(", "self", ")", ":", "out", "=", "dict", "(", "zip", "(", "[", "'xmin'", ",", "'xres'", ",", "'rotation_x'", ",", "'ymax'", ",", "'rotation_y'", ",", "'yres'", "]", ",", "self", ".", "raster", ".", "GetGeoTransform", "(", ")", ")", ...	33.75	0.009009
def send_direct_operate_command_set(self, command_set, callback=asiodnp3.PrintingCommandCallback.Get(), config=opendnp3.TaskConfig().Default()): """ Direct operate a set of commands :param command_set: set of command headers :param callback: c...	[ "def", "send_direct_operate_command_set", "(", "self", ",", "command_set", ",", "callback", "=", "asiodnp3", ".", "PrintingCommandCallback", ".", "Get", "(", ")", ",", "config", "=", "opendnp3", ".", "TaskConfig", "(", ")", ".", "Default", "(", ")", ")", ":"...	56.3	0.012238
def create_event_subscription(self, instance, on_data, timeout=60): """ Create a new subscription for receiving events of an instance. This method returns a future, then returns immediately. Stop the subscription by canceling the future. :param str instance: A Yamcs instance na...	[ "def", "create_event_subscription", "(", "self", ",", "instance", ",", "on_data", ",", "timeout", "=", "60", ")", ":", "manager", "=", "WebSocketSubscriptionManager", "(", "self", ",", "resource", "=", "'events'", ")", "# Represent subscription as a future", "subscr...	34.676471	0.00165
def _copytree(src, dst): """Similar to shutils.copytree, except that dst is already there """ try: os.makedirs(dst) except OSError: pass # It must already exist for file in os.listdir(src): try: shutil.copy2('%s/%s' % (src, file), '%s/%s' % (dst, file)) e...	[ "def", "_copytree", "(", "src", ",", "dst", ")", ":", "try", ":", "os", ".", "makedirs", "(", "dst", ")", "except", "OSError", ":", "pass", "# It must already exist", "for", "file", "in", "os", ".", "listdir", "(", "src", ")", ":", "try", ":", "shuti...	34.266667	0.001894
def get_gce_driver(self): """Determine the GCE authorization settings and return a libcloud driver. """ # Attempt to get GCE params from a configuration file, if one # exists. secrets_path = self.config.get('gce', 'libcloud_secrets') secrets_found = False ...	[ "def", "get_gce_driver", "(", "self", ")", ":", "# Attempt to get GCE params from a configuration file, if one", "# exists.", "secrets_path", "=", "self", ".", "config", ".", "get", "(", "'gce'", ",", "'libcloud_secrets'", ")", "secrets_found", "=", "False", "try", ":...	40.25	0.003032
def _operator_count(self, individual): """Count the number of pipeline operators as a measure of pipeline complexity. Parameters ---------- individual: list A grown tree with leaves at possibly different depths dependending on the condition function. Ret...	[ "def", "_operator_count", "(", "self", ",", "individual", ")", ":", "operator_count", "=", "0", "for", "i", "in", "range", "(", "len", "(", "individual", ")", ")", ":", "node", "=", "individual", "[", "i", "]", "if", "type", "(", "node", ")", "is", ...	32.55	0.004478
def append(self, P0, P1, itemsize=None, **kwargs): """ Append a new set of segments to the collection. For kwargs argument, n is the number of vertices (local) or the number of item (shared) Parameters ---------- P : np.array Vertices positions of t...	[ "def", "append", "(", "self", ",", "P0", ",", "P1", ",", "itemsize", "=", "None", ",", "", "", "kwargs", ")", ":", "itemsize", "=", "itemsize", "or", "1", "itemcount", "=", "len", "(", "P0", ")", "/", "itemsize", "V", "=", "np", ".", "empty", ...	27.319149	0.001504
def drop_extension(name, if_exists=None, restrict=None, cascade=None, user=None, host=None, port=None, maintenance_db=None, password=None, runas=None...	[ "def", "drop_extension", "(", "name", ",", "if_exists", "=", "None", ",", "restrict", "=", "None", ",", "cascade", "=", "None", ",", "user", "=", "None", ",", "host", "=", "None", ",", "port", "=", "None", ",", "maintenance_db", "=", "None", ",", "pa...	30.666667	0.000554
def follow(user, obj): """ Make a user follow an object """ follow, created = Follow.objects.get_or_create(user, obj) return follow	[ "def", "follow", "(", "user", ",", "obj", ")", ":", "follow", ",", "created", "=", "Follow", ".", "objects", ".", "get_or_create", "(", "user", ",", "obj", ")", "return", "follow" ]	35	0.006993
def cont_discr_kalman_filter(cls, F, L, Qc, p_H, p_R, P_inf, X, Y, index = None, m_init=None, P_init=None, p_kalman_filter_type='regular', calc_log_likelihood=False, calc_grad_log_likeliho...	[ "def", "cont_discr_kalman_filter", "(", "cls", ",", "F", ",", "L", ",", "Qc", ",", "p_H", ",", "p_R", ",", "P_inf", ",", "X", ",", "Y", ",", "index", "=", "None", ",", "m_init", "=", "None", ",", "P_init", "=", "None", ",", "p_kalman_filter_type", ...	45.747212	0.006999
def filter_values(d, vals=None, list_of_dicts=False, deepcopy=True): """ filters leaf nodes of nested dictionary Parameters ---------- d : dict vals : list values to filter by list_of_dicts: bool treat list of dicts as additional branches deepcopy: bool deepcopy valu...	[ "def", "filter_values", "(", "d", ",", "vals", "=", "None", ",", "list_of_dicts", "=", "False", ",", "deepcopy", "=", "True", ")", ":", "vals", "=", "[", "]", "if", "vals", "is", "None", "else", "vals", "list_of_dicts", "=", "'__list__'", "if", "list_o...	24.558824	0.001152
def damping(self): """Strain-compatible damping.""" try: value = self._damping.value except AttributeError: value = self._damping return value	[ "def", "damping", "(", "self", ")", ":", "try", ":", "value", "=", "self", ".", "_damping", ".", "value", "except", "AttributeError", ":", "value", "=", "self", ".", "_damping", "return", "value" ]	27.428571	0.010101
def _set_portfast(self, v, load=False): """ Setter method for portfast, mapped from YANG variable /interface/port_channel/spanning_tree/portfast (container) If this variable is read-only (config: false) in the source YANG file, then _set_portfast is considered as a private method. Backends looking t...	[ "def", "_set_portfast", "(", "self", ",", "v", ",", "load", "=", "False", ")", ":", "if", "hasattr", "(", "v", ",", "\"_utype\"", ")", ":", "v", "=", "v", ".", "_utype", "(", "v", ")", "try", ":", "t", "=", "YANGDynClass", "(", "v", ",", "base"...	83.227273	0.0054
def ensure_secret(): """Check if secret key to encryot sessions exists, generate it otherwise.""" home_dir = os.environ['HOME'] file_name = home_dir + "/.ipcamweb" if os.path.exists(file_name): with open(file_name, "r") as s_file: secret = s_file.readline() else: secr...	[ "def", "ensure_secret", "(", ")", ":", "home_dir", "=", "os", ".", "environ", "[", "'HOME'", "]", "file_name", "=", "home_dir", "+", "\"/.ipcamweb\"", "if", "os", ".", "path", ".", "exists", "(", "file_name", ")", ":", "with", "open", "(", "file_name", ...	33.615385	0.002227
def unload_module(self, path): '''Unload a loaded shared library. Call this function to remove a shared library (e.g. a component) that was previously loaded. @param path The path to the shared library. @raises FailedToUnloadModuleError ''' with self._mutex: ...	[ "def", "unload_module", "(", "self", ",", "path", ")", ":", "with", "self", ".", "_mutex", ":", "if", "self", ".", "_obj", ".", "unload_module", "(", "path", ")", "!=", "RTC", ".", "RTC_OK", ":", "raise", "FailedToUnloadModuleError", "(", "path", ")" ]	32.230769	0.00464
def render(self, display): """Render basicly the text.""" # to handle changing objects / callable if self.text != self._last_text: self._render() display.blit(self._surface, (self.topleft, self.size))	[ "def", "render", "(", "self", ",", "display", ")", ":", "# to handle changing objects / callable", "if", "self", ".", "text", "!=", "self", ".", "_last_text", ":", "self", ".", "_render", "(", ")", "display", ".", "blit", "(", "self", ".", "_surface", ",",...	34.142857	0.008163
def _run_cplusplus(work_bam_a, work_bam_b, out_dir, aligner, prefix, items): """Run third party disambiguation script, resolving into single set of calls. """ ngs_disambiguate = config_utils.get_program("ngs_disambiguate", items[0]["config"]) cmd = [ngs_disambiguate, "--no-sort", "--prefix", prefix, "--...	[ "def", "_run_cplusplus", "(", "work_bam_a", ",", "work_bam_b", ",", "out_dir", ",", "aligner", ",", "prefix", ",", "items", ")", ":", "ngs_disambiguate", "=", "config_utils", ".", "get_program", "(", "\"ngs_disambiguate\"", ",", "items", "[", "0", "]", "[", ...	62.285714	0.00905
def indicator_associations_types( self, indicator_type, api_entity=None, api_branch=None, params=None ): """ Gets the indicator association from a Indicator/Group/Victim Args: indicator_type: api_entity: api_branch: params: Re...	[ "def", "indicator_associations_types", "(", "self", ",", "indicator_type", ",", "api_entity", "=", "None", ",", "api_branch", "=", "None", ",", "params", "=", "None", ")", ":", "if", "params", "is", "None", ":", "params", "=", "{", "}", "if", "not", "sel...	26.09375	0.003464
def copyWithoutMathSubObjects(self): """ return a new MathGlyph containing all data except: contours components anchors guidelines this is used mainly for internal glyph math. """ n = MathGlyph(None) n.name = self.name if self.unic...	[ "def", "copyWithoutMathSubObjects", "(", "self", ")", ":", "n", "=", "MathGlyph", "(", "None", ")", "n", ".", "name", "=", "self", ".", "name", "if", "self", ".", "unicodes", "is", "not", "None", ":", "n", ".", "unicodes", "=", "list", "(", "self", ...	26.789474	0.003795
def rotation_from_axes(x_axis, y_axis, z_axis): """Convert specification of axis in target frame to a rotation matrix from source to target frame. Parameters ---------- x_axis : :obj:`numpy.ndarray` of float A normalized 3-vector for the target frame's x-axis. ...	[ "def", "rotation_from_axes", "(", "x_axis", ",", "y_axis", ",", "z_axis", ")", ":", "return", "np", ".", "hstack", "(", "(", "x_axis", "[", ":", ",", "np", ".", "newaxis", "]", ",", "y_axis", "[", ":", ",", "np", ".", "newaxis", "]", ",", "z_axis",...	36.5	0.007282
def copy(source, destination): """Copy file or directory. Args: source (str): Source file or directory destination (str): Destination file or directory (where to copy). Returns: bool: True if the operation is successful, False otherwise. """ if os.path.isdir(source): ...	[ "def", "copy", "(", "source", ",", "destination", ")", ":", "if", "os", ".", "path", ".", "isdir", "(", "source", ")", ":", "return", "__copytree", "(", "source", ",", "destination", ")", "else", ":", "return", "__copyfile2", "(", "source", ",", "desti...	28.928571	0.002392
def join(self, network): """ Join a zerotier network :param network: network id to join :return: """ args = {'network': network} self._network_chk.check(args) response = self._client.raw('zerotier.join', args) result = response.get() if r...	[ "def", "join", "(", "self", ",", "network", ")", ":", "args", "=", "{", "'network'", ":", "network", "}", "self", ".", "_network_chk", ".", "check", "(", "args", ")", "response", "=", "self", ".", "_client", ".", "raw", "(", "'zerotier.join'", ",", "...	29.785714	0.006977
def course_register_user(self, course, username=None, password=None, force=False): """ Register a user to the course :param course: a Course object :param username: The username of the user that we want to register. If None, uses self.session_username() :param password: Password ...	[ "def", "course_register_user", "(", "self", ",", "course", ",", "username", "=", "None", ",", "password", "=", "None", ",", "force", "=", "False", ")", ":", "if", "username", "is", "None", ":", "username", "=", "self", ".", "session_username", "(", ")", ...	50.888889	0.00857
def match_best_pdb_chains(pdb1, pdb1_name, pdb2, pdb2_name, cut_off = 60.0, use_seqres_sequences_if_possible = True): '''A wrapper function for match_pdb_chains. This function only takes the best match. The return value is a dict mapping chain_id_in_pdb1 -> None or a tuple (chain_id_in_pdb_2, pe...	[ "def", "match_best_pdb_chains", "(", "pdb1", ",", "pdb1_name", ",", "pdb2", ",", "pdb2_name", ",", "cut_off", "=", "60.0", ",", "use_seqres_sequences_if_possible", "=", "True", ")", ":", "d", "=", "match_pdb_chains", "(", "pdb1", ",", "pdb1_name", ",", "pdb2",...	67.4	0.021962
def __dbfHeader(self): """Writes the dbf header and field descriptors.""" f = self.__getFileObj(self.dbf) f.seek(0) version = 3 year, month, day = time.localtime()[:3] year -= 1900 # Remove deletion flag placeholder from fields for field in self.fi...	[ "def", "__dbfHeader", "(", "self", ")", ":", "f", "=", "self", ".", "__getFileObj", "(", "self", ".", "dbf", ")", "f", ".", "seek", "(", "0", ")", "version", "=", "3", "year", ",", "month", ",", "day", "=", "time", ".", "localtime", "(", ")", "...	41.515152	0.00214
def _import(self, name): ''' Import namespace package ''' mod = __import__(name) components = name.split('.') for comp in components[1:]: mod = getattr(mod, comp) return mod	[ "def", "_import", "(", "self", ",", "name", ")", ":", "mod", "=", "__import__", "(", "name", ")", "components", "=", "name", ".", "split", "(", "'.'", ")", "for", "comp", "in", "components", "[", "1", ":", "]", ":", "mod", "=", "getattr", "(", "m...	31.285714	0.008889
def wave_units(self, units): """ A setter for the wavelength units Parameters ---------- units: str, astropy.units.core.PrefixUnit The wavelength units """ # Make sure it's length units if not units.is_equivalent(q.m): raise ValueE...	[ "def", "wave_units", "(", "self", ",", "units", ")", ":", "# Make sure it's length units", "if", "not", "units", ".", "is_equivalent", "(", "q", ".", "m", ")", ":", "raise", "ValueError", "(", "units", ",", "\": New wavelength units must be a length.\"", ")", "#...	42.607143	0.001639
def tokens(self): """ Return a list of (type, value) tokens. """ if not self._tokens: self._tokens = list(self.tokenise(self.route)) return self._tokens	[ "def", "tokens", "(", "self", ")", ":", "if", "not", "self", ".", "_tokens", ":", "self", ".", "_tokens", "=", "list", "(", "self", ".", "tokenise", "(", "self", ".", "route", ")", ")", "return", "self", ".", "_tokens" ]	36.8	0.010638
def convert_softmax(node, **kwargs): """Map MXNet's softmax operator attributes to onnx's Softmax operator and return the created node. """ name, input_nodes, attrs = get_inputs(node, kwargs) axis = int(attrs.get("axis", -1)) softmax_node = onnx.helper.make_node( "Softmax", inp...	[ "def", "convert_softmax", "(", "node", ",", "", "", "kwargs", ")", ":", "name", ",", "input_nodes", ",", "attrs", "=", "get_inputs", "(", "node", ",", "kwargs", ")", "axis", "=", "int", "(", "attrs", ".", "get", "(", "\"axis\"", ",", "-", "1", ")...	23.470588	0.00241
def get_or_set_hash(uri, length=8, chars='abcdefghijklmnopqrstuvwxyz0123456789!@#$%^&*(-_=+)'): ''' Perform a one-time generation of a hash and write it to sdb. If that value has already been set return the value instead. This is useful for generating passwords or keys that are specific...	[ "def", "get_or_set_hash", "(", "uri", ",", "length", "=", "8", ",", "chars", "=", "'abcdefghijklmnopqrstuvwxyz0123456789!@#$%^&*(-_=+)'", ")", ":", "return", "salt", ".", "utils", ".", "sdb", ".", "sdb_get_or_set_hash", "(", "uri", ",", "__opts__", ",", "length"...	32.794118	0.006969
def get_ip(request): """ Retrieves the remote IP address from the request data. If the user is behind a proxy, they may have a comma-separated list of IP addresses, so we need to account for that. In such a case, only the first IP in the list will be retrieved. Also, some hosts that use a proxy w...	[ "def", "get_ip", "(", "request", ")", ":", "# if neither header contain a value, just use local loopback", "ip_address", "=", "request", ".", "META", ".", "get", "(", "'HTTP_X_FORWARDED_FOR'", ",", "request", ".", "META", ".", "get", "(", "'REMOTE_ADDR'", ",", "'127...	39.766667	0.000818
def size(self, destination): """ Size of the queue for specified destination. @param destination: The queue destination (e.g. /queue/foo) @type destination: C{str} @return: The number of frames in specified queue. @rtype: C{int} """ if not destination in...	[ "def", "size", "(", "self", ",", "destination", ")", ":", "if", "not", "destination", "in", "self", ".", "queue_metadata", ":", "return", "0", "else", ":", "return", "len", "(", "self", ".", "queue_metadata", "[", "destination", "]", "[", "'frames'", "]"...	30.714286	0.006772
def update_sg(self, context, sg, rule_id, action): """Begins the async update process.""" db_sg = db_api.security_group_find(context, id=sg, scope=db_api.ONE) if not db_sg: return None with context.session.begin(): job_body = dict(action="%s sg rule %s" % (action,...	[ "def", "update_sg", "(", "self", ",", "context", ",", "sg", ",", "rule_id", ",", "action", ")", ":", "db_sg", "=", "db_api", ".", "security_group_find", "(", "context", ",", "id", "=", "sg", ",", "scope", "=", "db_api", ".", "ONE", ")", "if", "not", ...	47.222222	0.002307
def filter(self, **search_args): """ Get a filtered list of resources :param search_args: To be translated into ?arg1=value1&arg2=value2... :return: A list of resources """ search_args = search_args or {} raw_resources = [] for url, paginator_params in se...	[ "def", "filter", "(", "self", ",", "", "", "search_args", ")", ":", "search_args", "=", "search_args", "or", "{", "}", "raw_resources", "=", "[", "]", "for", "url", ",", "paginator_params", "in", "self", ".", "paginator", ".", "get_urls", "(", "self", ...	41.884615	0.004488
def run(self, ipyclient=None, ): """ Run a batch of dstat tests on a list of tests, where each test is a dictionary mapping sample names to {p1 - p4} (and sometimes p5). Parameters modifying the behavior of the run, such as the number of bootstrap replicates (n...	[ "def", "run", "(", "self", ",", "ipyclient", "=", "None", ",", ")", ":", "self", ".", "results_table", ",", "self", ".", "results_boots", "=", "batch", "(", "self", ",", "ipyclient", ")", "## skip this for 5-part test results", "if", "not", "isinstance", "("...	41.714286	0.008929
def collect(self): """ Collector Passenger stats """ if not os.access(self.config["bin"], os.X_OK): self.log.error("Path %s does not exist or is not executable", self.config["bin"]) return {} dict_stats = self.get_passenger_memo...	[ "def", "collect", "(", "self", ")", ":", "if", "not", "os", ".", "access", "(", "self", ".", "config", "[", "\"bin\"", "]", ",", "os", ".", "X_OK", ")", ":", "self", ".", "log", ".", "error", "(", "\"Path %s does not exist or is not executable\"", ",", ...	40.666667	0.001456
def open(filename): """Open a file in read only mode using the encoding detected by detect_encoding(). """ buffer = _builtin_open(filename, 'rb') try: encoding, lines = detect_encoding(buffer.readline) buffer.seek(0) text = TextIOWrapper(buffer, encoding, line_buffering=True) text.mode = 'r' return text ...	[ "def", "open", "(", "filename", ")", ":", "buffer", "=", "_builtin_open", "(", "filename", ",", "'rb'", ")", "try", ":", "encoding", ",", "lines", "=", "detect_encoding", "(", "buffer", ".", "readline", ")", "buffer", ".", "seek", "(", "0", ")", "text"...	24.285714	0.042493
def allow_client_outgoing(self, application_sid, **kwargs): """ Allow the user of this token to make outgoing connections. Keyword arguments are passed to the application. :param str application_sid: Application to contact """ scope = ScopeURI('client', 'outgoing', {'app...	[ "def", "allow_client_outgoing", "(", "self", ",", "application_sid", ",", "", "", "kwargs", ")", ":", "scope", "=", "ScopeURI", "(", "'client'", ",", "'outgoing'", ",", "{", "'appSid'", ":", "application_sid", "}", ")", "if", "kwargs", ":", "scope", ".",...	39.166667	0.006237
def checkKey(self, key=None): ''' Checks that an API key is valid. :param str key: (optional) A key that you want to check the validity of. Defaults to the one provided on initialization. :returns: If the key is valid, this method will return ``True``. :rtype: `bool` :ra...	[ "def", "checkKey", "(", "self", ",", "key", "=", "None", ")", ":", "# Get site", "url", "=", "Client", ".", "ENDPOINT", ".", "format", "(", "'checkKey'", ")", "if", "not", "key", ":", "key", "=", "self", ".", "apiKey", "params", "=", "{", "'apiKey'",...	34.166667	0.005931
def verifyUpdatewcs(fname): """ Verify the existence of WCSNAME in the file. If it is not present, report this to the user and raise an exception. Returns True if WCSNAME was found in all SCI extensions. """ updated = True numsci,extname = count_sci_extensions(fname) for n in range(1,n...	[ "def", "verifyUpdatewcs", "(", "fname", ")", ":", "updated", "=", "True", "numsci", ",", "extname", "=", "count_sci_extensions", "(", "fname", ")", "for", "n", "in", "range", "(", "1", ",", "numsci", "+", "1", ")", ":", "hdr", "=", "fits", ".", "geth...	35.071429	0.005952
def get_album(self, id): """Return information about this album.""" url = self._base_url + "/3/album/{0}".format(id) json = self._send_request(url) return Album(json, self)	[ "def", "get_album", "(", "self", ",", "id", ")", ":", "url", "=", "self", ".", "_base_url", "+", "\"/3/album/{0}\"", ".", "format", "(", "id", ")", "json", "=", "self", ".", "_send_request", "(", "url", ")", "return", "Album", "(", "json", ",", "self...	40	0.009804
def _set_format_scope(self, fmt): """ Opens the format scope. """ self._prev_fmt = QtGui.QTextCharFormat(fmt) self._prev_fmt_closed = False	[ "def", "_set_format_scope", "(", "self", ",", "fmt", ")", ":", "self", ".", "_prev_fmt", "=", "QtGui", ".", "QTextCharFormat", "(", "fmt", ")", "self", ".", "_prev_fmt_closed", "=", "False" ]	29	0.011173
def _merge_list_of_keys_into_dict(cls, data, keys, value, index=0): """Recursively merge list of keys that points to the given value into data. Will override a primitive value with another primitive value, but will not override a primitive with a dictionary. For example: Given the dictionary {'a':...	[ "def", "_merge_list_of_keys_into_dict", "(", "cls", ",", "data", ",", "keys", ",", "value", ",", "index", "=", "0", ")", ":", "if", "len", "(", "keys", ")", "==", "0", "or", "index", "<", "0", "or", "index", ">=", "len", "(", "keys", ")", ":", "r...	49.512821	0.009142
def process_raw_data(cls, raw_data): """Create a new model using raw API response.""" properties = raw_data.get("properties", {}) raw_content = properties.get("ipConfiguration", None) if raw_content is not None: resource = Resource.from_raw_data(raw_content) prop...	[ "def", "process_raw_data", "(", "cls", ",", "raw_data", ")", ":", "properties", "=", "raw_data", ".", "get", "(", "\"properties\"", ",", "{", "}", ")", "raw_content", "=", "properties", ".", "get", "(", "\"ipConfiguration\"", ",", "None", ")", "if", "raw_c...	42	0.004662
def _bbvi_fit(self, optimizer='RMSProp', iterations=1000, print_progress=True, start_diffuse=False, **kwargs): """ Performs Black Box Variational Inference Parameters ---------- posterior : method Hands bbvi_fit a posterior object optimizer : string ...	[ "def", "_bbvi_fit", "(", "self", ",", "optimizer", "=", "'RMSProp'", ",", "iterations", "=", "1000", ",", "print_progress", "=", "True", ",", "start_diffuse", "=", "False", ",", "", "", "kwargs", ")", ":", "if", "self", ".", "model_name2", "in", "[", ...	38.013514	0.0149
def _requirements_to_dict(rs): """Convert supported requirements into dictionary for output. """ out = [] added = set([]) for r in rs: if r["class"] == "DockerRequirement" and "docker" not in added: added.add("docker") out.append({"requirement_type": "docker", "value"...	[ "def", "_requirements_to_dict", "(", "rs", ")", ":", "out", "=", "[", "]", "added", "=", "set", "(", "[", "]", ")", "for", "r", "in", "rs", ":", "if", "r", "[", "\"class\"", "]", "==", "\"DockerRequirement\"", "and", "\"docker\"", "not", "in", "added...	46.85	0.004184
def init_app(self, app, sqla, namespace='api', route_prefix='/api'): """ Initialize the adapter if it hasn't already been initialized. :param app: Flask application :param sqla: Flask-SQLAlchemy instance :param namespace: Prefixes all generated routes :param route_prefix...	[ "def", "init_app", "(", "self", ",", "app", ",", "sqla", ",", "namespace", "=", "'api'", ",", "route_prefix", "=", "'/api'", ")", ":", "self", ".", "app", "=", "app", "self", ".", "sqla", "=", "sqla", "self", ".", "_setup_adapter", "(", "namespace", ...	35.538462	0.004219
def _analyze_func_string(func_string): """ Analyze given functiion string an extract: * function name * function arguments * function keyword arguments All given arguments must by of type string, int/float or list. :param func_string: string of the function :return: function name, arg...	[ "def", "_analyze_func_string", "(", "func_string", ")", ":", "func", "=", "ast", ".", "parse", "(", "func_string", ")", "try", ":", "func_call", "=", "func", ".", "body", "[", "0", "]", ".", "value", "func_name", "=", "func_call", ".", "func", ".", "id...	34.206349	0.000902
def evaluate_call_args(self, calculator): """Interpreting this literal as a function call, return a 2-tuple of ``(args, kwargs)``. """ args = [] kwargs = OrderedDict() # Sass kwargs preserve order for var_node, value_node in self.argpairs: value = value_node....	[ "def", "evaluate_call_args", "(", "self", ",", "calculator", ")", ":", "args", "=", "[", "]", "kwargs", "=", "OrderedDict", "(", ")", "# Sass kwargs preserve order", "for", "var_node", ",", "value_node", "in", "self", ".", "argpairs", ":", "value", "=", "val...	37.478261	0.002262
def start(self, wait=False): """Start a task. This function depends on the underlying implementation of _start, which any subclass of ``Task`` should implement. Args: wait (bool): Whether or not to wait on the task to finish before returning from this functi...	[ "def", "start", "(", "self", ",", "wait", "=", "False", ")", ":", "if", "self", ".", "_status", "is", "not", "TaskStatus", ".", "IDLE", ":", "raise", "RuntimeError", "(", "\"Cannot start %s in state %s\"", "%", "(", "self", ",", "self", ".", "_status", "...	32.12	0.002418
def undecorate(func): """Returns the decorator and the undecorated function of given object.""" orig_call_wrapper = lambda x: x for call_wrapper, unwrap in SUPPORTED_DECORATOR.items(): if isinstance(func, call_wrapper): func = unwrap(func) orig_call_wrapper = call_wrapper ...	[ "def", "undecorate", "(", "func", ")", ":", "orig_call_wrapper", "=", "lambda", "x", ":", "x", "for", "call_wrapper", ",", "unwrap", "in", "SUPPORTED_DECORATOR", ".", "items", "(", ")", ":", "if", "isinstance", "(", "func", ",", "call_wrapper", ")", ":", ...	40.111111	0.00542

def execute(helper, config, args): """ dump command dumps things """ env = parse_env_config(config, args.environment) option_settings = env.get('option_settings', {}) settings = parse_option_settings(option_settings) for setting in settings: out(str(setting))

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def create(self, dataset_id): """ Create a dataset in Google BigQuery Parameters ---------- dataset : str Name of dataset to be written """ from google.cloud.bigquery import Dataset if self.exists(dataset_id): raise DatasetCreationError( ...

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def add_content(self, content): """ Add content to this fragment. `content` is a Unicode string, HTML to append to the body of the fragment. It must not contain a ``<body>`` tag, or otherwise assume that it is the only content on the page. """ assert isinstance(...

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def compute_score_threshold(average_window_readcount, island_enriched_threshold, gap_contribution, boundary_contribution, genome_length_in_bins): # type: (float, int, float, float, float) -> float """ What does island_expect...

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def show_xys(self, xs, ys)->None: "Show the `xs` (inputs) and `ys` (targets)." from IPython.display import display, HTML items,names = [], xs[0].names + ['target'] for i, (x,y) in enumerate(zip(xs,ys)): res = [] cats = x.cats if len(x.cats.size()) > 0 else [] ...

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def do_thaw(client, args): """Execute the thaw operation, pulling in an actual Vault client if neccesary""" vault_client = None if args.gpg_pass_path: vault_client = client.connect(args) aomi.filez.thaw(vault_client, args.icefile, args) sys.exit(0)

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def periodogram(self): """An alias to :class:`~spectrum.periodogram.Periodogram` The parameters are extracted from the attributes. Relevant attributes ares :attr:`window`, attr:`sampling`, attr:`NFFT`, attr:`scale_by_freq`, :attr:`detrend`. .. plot:: :width: 80% ...

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def from_progression_shorthand(self, shorthand, key='C'): """Empty the container and add the notes described in the progressions shorthand (eg. 'IIm6', 'V7', etc). See mingus.core.progressions for all the recognized format. Example: >>> NoteContainer().from_progression_shorthan...

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def lines(start=None, end=None, reverse=False, selection=False): """Iterate lines in range. Args: start: Starting address, start of IDB if `None`. end: End address, end of IDB if `None`. reverse: Set to true to iterate in reverse order. selection: If set to True, replaces start ...

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def apply_filters(stopwords, language): """ Apply registered filters to stopwords :param stopwords: list :param language: string :return: filtered stopwords """ if language in _filters: for func in _filters[language]: stopwords = func(stopwords) for func in _filters[...

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def fast_group_adder(wires_to_add, reducer=wallace_reducer, final_adder=kogge_stone): """ A generalization of the carry save adder, this is designed to add many numbers together in a both area and time efficient manner. Uses a tree reducer to achieve this performance :param [WireVector] wires_to_a...

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def get_viewer(self, v_id, viewer_class=None, width=512, height=512, force_new=False): """ Get an existing viewer by viewer id. If the viewer does not yet exist, make a new one. """ if not force_new: try: return self.viewers[v_id] ...

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def find_library_darwin(cls): """Loads the SEGGER DLL from the installed applications. This method accounts for the all the different ways in which the DLL may be installed depending on the version of the DLL. Always uses the first directory found. SEGGER's DLL is installed in...

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def write_zip(file_path, data, properties): """ Write custom zip file to the file path :param file_path: the file to which to write the zip file :param data: the data to write to the file; may be None :param properties: the properties to write to the file; may be None The p...

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def global_request(self, kind, data=None, wait=True): """ Make a global request to the remote host. These are normally extensions to the SSH2 protocol. :param str kind: name of the request. :param tuple data: an optional tuple containing additional data to attach to...

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def validate(self, object): """Validate an object against the schema. This function just passes if the schema matches the object. If the object does not match the schema, a ValidationException is raised. This error allows debugging. """ resolver=self.get_resolver() ...

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def add_toc_entry(self, title, level, slide_number): """ Adds a new entry to current presentation Table of Contents. """ self.__toc.append({'title': title, 'number': slide_number, 'level': level})

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def gcc_checker(code, filename_suffix, arguments, working_directory): """Return checker.""" run = run_in_subprocess(code, filename_suffix, arguments + ['-pedantic', '-fsyntax-only'], working_directory=working_directory) def...

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def create_cert_signed_certificate(self, sign_cert_str, sign_key_str, request_cert_str, hash_alg="sha256", valid_from=0, valid_to=315360000, sn=1, passphrase=None): """ Will sign a certi...

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def add_item(self, host, key, value, clock=None, state=0): """ Add a single item into DataContainer :host: hostname to which item will be linked to :key: item key as defined in Zabbix :value: item value :clock: timestemp as integer. If not provided self.clock()) will be ...

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def dedent(text): """Equivalent of textwrap.dedent that ignores unindented first line. This means it will still dedent strings like: '''foo is a bar ''' For use in wrap_paragraphs. """ if text.startswith('\n'): # text starts with blank line, don't ignore the first line ...

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def authenticate(org): """ Authenticate with GitHub via SSH if possible Otherwise authenticate via HTTPS Returns an authenticated User """ with ProgressBar(_("Authenticating")) as progress_bar: user = _authenticate_ssh(org) progress_bar.stop() if user is None: ...

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def saveWallet(self, wallet, fpath): """Save wallet into specified localtion. Returns the canonical path for the ``fpath`` where ``wallet`` has been stored. Error cases: - ``fpath`` is not inside the keyrings base dir - ValueError raised - directory part of ``fp...

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def _apply_Create(self, change): '''A record from change must be created. :param change: a change object :type change: octodns.record.Change :type return: void ''' ar = _AzureRecord(self._resource_group, change.new) create = self._dns_client.record_...

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def catch_raise_api_exception(): """Context manager that translates upstream API exceptions.""" try: yield except _ApiException as exc: detail = None fields = None if exc.body: try: # pylint: disable=no-member data = json.loads(exc...

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def smeft_evolve(C_in, scale_in, scale_out, newphys=True, **kwargs): """Solve the SMEFT RGEs by numeric integration. Input C_in and output C_out are dictionaries of arrays.""" sol = _smeft_evolve(C_in, scale_in, scale_out, newphys=newphys, **kwargs) return C_array2dict(sol.y[:, -1].view(complex))

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def set_sleep(minutes): ''' Sets the amount of idle time until the machine sleeps. Sets the same value for Computer, Display, and Hard Disk. Pass "Never" or "Off" for computers that should never sleep. :param minutes: Can be an integer between 1 and 180 or "Never" or "Off" :ptype: int, str ...

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def load_child_sections_for_section(context, section, count=None): ''' Returns all child sections If the `locale_code` in the context is not the main language, it will return the translations of the live articles. ''' page = section.get_main_language_page() locale = context.get('locale_code'...

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def str_(name): """Return the string representation of the given 'name'. If it is a bytes object, it will be converted into str. If it is a str object, it will simply be resurned.""" if isinstance(name, bytes) and not isinstance(name, str): return name.decode('utf8') else: return name

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def _file_lines(self, filename): """Get lines for filename, caching opened files.""" try: return self._file_lines_cache[filename] except KeyError: if os.path.isfile(filename): with open(filename) as python_file: self._file_lines_cache[f...

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def append(self, cb): """Adds a callback.""" self.callbacks.append(cb.callb) self.monitor = self.monitor | cb.callb.bit yield from self.pi._pigpio_aio_command(_PI_CMD_NB, self.handle, self.monitor)

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def cli_parse(file_path, sa, nameservers, dns_timeout, parallel=False): """Separated this function for multiprocessing""" try: file_results = parse_report_file(file_path, nameservers=nameservers, dns_timeout=dns_timeout, ...

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def render_to_response(self, context, **response_kwargs): """ Overloaded to deal with _format arguments. """ # should we actually render in json? if '_format' in self.request.GET and self.request.GET['_format'] == 'json': return JsonResponse(self.as_json(context), saf...

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def add_dashboard_panel(self, dashboard, name, panel_type, metrics, scope=None, sort_by=None, limit=None, layout=None): """**Description** Adds a panel to the dashboard. A panel can be a time series, or a top chart (i.e. bar chart), or a number panel. **Arguments** - **dashboard...

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def _CheckType(value, check_type, name, allow_none=True): """Check that the type of an object is acceptable. Args: value: The object whose type is to be checked. check_type: The type that the object must be an instance of. name: Name of the object, to be placed in any error messages. allow_none: Tr...

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def copies(self): """ All test case copies created by the user """ import nitrate if self._copies is None: log.info(u"Searching for cases copied by {0}".format(self.user)) self._copies = [ case for case in nitrate.TestCase.search( autho...

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def evaluateCommand(self, cmd): """ cppcheck always return 0, unless a special parameter is given """ for msg in self.flunkingIssues: if self.counts[msg] != 0: return FAILURE if self.getProperty('cppcheck-total') != 0: return WARNINGS return SUCCES...

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def log_config(verbose: bool) -> dict: """ Setup default config. for dictConfig. :param verbose: level: DEBUG if True, INFO if False :return: dict suitable for ``logging.config.dictConfig`` """ log_level = 'DEBUG' if verbose else 'INFO' return { 'version': 1, 'disable_existin...

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def format_citations(zid, url='https://zenodo.org/', hits=10, tag_prefix='v'): """Query and format a citations page from Zenodo entries Parameters ---------- zid : `int`, `str` the Zenodo ID of the target record url : `str`, optional the base URL of the Zenodo host, defaults to ``h...

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def get_schemas(cls, schema_types=None, sort=True): """ Get schemas by type. If ``schema_type`` is None, return all schemas :param schema_types: list of schema types :type schema_types: list or None :param bool sort: sort by name :return: list of schemas :rtype: ...

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def p_class_name(p): '''class_name : namespace_name | NS_SEPARATOR namespace_name | NAMESPACE NS_SEPARATOR namespace_name''' if len(p) == 2: p[0] = p[1] elif len(p) == 3: p[0] = p[1] + p[2] else: p[0] = p[1] + p[2] + p[3]

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def sigStrToKwArgsDict(checkFuncSig): """ Take a check function signature (string), and parse it to get a dict of the keyword args and their values. """ p1 = checkFuncSig.find('(') p2 = checkFuncSig.rfind(')') assert p1 > 0 and p2 > 0 and p2 > p1, "Invalid signature: "+checkFuncSig argParts ...

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def media_new_callbacks(self, open_cb, read_cb, seek_cb, close_cb, opaque): '''Create a media with custom callbacks to read the data from. @param open_cb: callback to open the custom bitstream input media. @param read_cb: callback to read data (must not be NULL). @param seek_cb: callback...

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def _load_pretrained_tok2vec(nlp, loc): """Load pre-trained weights for the 'token-to-vector' part of the component models, which is typically a CNN. See 'spacy pretrain'. Experimental. """ with loc.open("rb") as file_: weights_data = file_.read() loaded = [] for name, component in nlp.p...

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def ensure_mingw_drive(win32_path): r""" replaces windows drives with mingw style drives Args: win32_path (str): CommandLine: python -m utool.util_path --test-ensure_mingw_drive Example: >>> # DISABLE_DOCTEST >>> from utool.util_path import * # NOQA >>> win32_...

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def OnClose(self, event): """Program exit event handler""" # If changes have taken place save of old grid if undo.stack().haschanged(): save_choice = self.interfaces.get_save_request_from_user() if save_choice is None: # Cancelled close operation ...

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def n_neurites(neurites, neurite_type=NeuriteType.all): '''Number of neurites in a collection of neurites''' return sum(1 for _ in iter_neurites(neurites, filt=is_type(neurite_type)))

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def device_type_from_string(cl_device_type_str): """Converts values like ``gpu`` to a pyopencl device type string. Supported values are: ``accelerator``, ``cpu``, ``custom``, ``gpu``. If ``all`` is given, None is returned. Args: cl_device_type_str (str): The string we want to convert to a device t...

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def new_geom(geom_type, size, pos=(0, 0, 0), rgba=RED, group=0, **kwargs): """ Creates a geom element with attributes specified by @**kwargs. Args: geom_type (str): type of the geom. see all types here: http://mujoco.org/book/modeling.html#geom size: geom size parameters. ...

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def geo(self): """ General image geo information. Returns ------- dict a dictionary with keys `xmin`, `xmax`, `xres`, `rotation_x`, `ymin`, `ymax`, `yres`, `rotation_y` """ out = dict(zip(['xmin', 'xres', 'rotation_x', 'ymax', 'rotation_y', 'yres'], ...

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def send_direct_operate_command_set(self, command_set, callback=asiodnp3.PrintingCommandCallback.Get(), config=opendnp3.TaskConfig().Default()): """ Direct operate a set of commands :param command_set: set of command headers :param callback: c...

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def create_event_subscription(self, instance, on_data, timeout=60): """ Create a new subscription for receiving events of an instance. This method returns a future, then returns immediately. Stop the subscription by canceling the future. :param str instance: A Yamcs instance na...

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def _copytree(src, dst): """Similar to shutils.copytree, except that dst is already there """ try: os.makedirs(dst) except OSError: pass # It must already exist for file in os.listdir(src): try: shutil.copy2('%s/%s' % (src, file), '%s/%s' % (dst, file)) e...

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def get_gce_driver(self): """Determine the GCE authorization settings and return a libcloud driver. """ # Attempt to get GCE params from a configuration file, if one # exists. secrets_path = self.config.get('gce', 'libcloud_secrets') secrets_found = False ...

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def _operator_count(self, individual): """Count the number of pipeline operators as a measure of pipeline complexity. Parameters ---------- individual: list A grown tree with leaves at possibly different depths dependending on the condition function. Ret...

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def append(self, P0, P1, itemsize=None, **kwargs): """ Append a new set of segments to the collection. For kwargs argument, n is the number of vertices (local) or the number of item (shared) Parameters ---------- P : np.array Vertices positions of t...

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def drop_extension(name, if_exists=None, restrict=None, cascade=None, user=None, host=None, port=None, maintenance_db=None, password=None, runas=None...

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def follow(user, obj): """ Make a user follow an object """ follow, created = Follow.objects.get_or_create(user, obj) return follow

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def cont_discr_kalman_filter(cls, F, L, Qc, p_H, p_R, P_inf, X, Y, index = None, m_init=None, P_init=None, p_kalman_filter_type='regular', calc_log_likelihood=False, calc_grad_log_likeliho...

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def filter_values(d, vals=None, list_of_dicts=False, deepcopy=True): """ filters leaf nodes of nested dictionary Parameters ---------- d : dict vals : list values to filter by list_of_dicts: bool treat list of dicts as additional branches deepcopy: bool deepcopy valu...

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def damping(self): """Strain-compatible damping.""" try: value = self._damping.value except AttributeError: value = self._damping return value

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def _set_portfast(self, v, load=False): """ Setter method for portfast, mapped from YANG variable /interface/port_channel/spanning_tree/portfast (container) If this variable is read-only (config: false) in the source YANG file, then _set_portfast is considered as a private method. Backends looking t...

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def ensure_secret(): """Check if secret key to encryot sessions exists, generate it otherwise.""" home_dir = os.environ['HOME'] file_name = home_dir + "/.ipcamweb" if os.path.exists(file_name): with open(file_name, "r") as s_file: secret = s_file.readline() else: secr...

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def unload_module(self, path): '''Unload a loaded shared library. Call this function to remove a shared library (e.g. a component) that was previously loaded. @param path The path to the shared library. @raises FailedToUnloadModuleError ''' with self._mutex: ...

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def render(self, display): """Render basicly the text.""" # to handle changing objects / callable if self.text != self._last_text: self._render() display.blit(self._surface, (self.topleft, self.size))

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def _run_cplusplus(work_bam_a, work_bam_b, out_dir, aligner, prefix, items): """Run third party disambiguation script, resolving into single set of calls. """ ngs_disambiguate = config_utils.get_program("ngs_disambiguate", items[0]["config"]) cmd = [ngs_disambiguate, "--no-sort", "--prefix", prefix, "--...

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def indicator_associations_types( self, indicator_type, api_entity=None, api_branch=None, params=None ): """ Gets the indicator association from a Indicator/Group/Victim Args: indicator_type: api_entity: api_branch: params: Re...

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def copyWithoutMathSubObjects(self): """ return a new MathGlyph containing all data except: contours components anchors guidelines this is used mainly for internal glyph math. """ n = MathGlyph(None) n.name = self.name if self.unic...

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def rotation_from_axes(x_axis, y_axis, z_axis): """Convert specification of axis in target frame to a rotation matrix from source to target frame. Parameters ---------- x_axis : :obj:`numpy.ndarray` of float A normalized 3-vector for the target frame's x-axis. ...

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def copy(source, destination): """Copy file or directory. Args: source (str): Source file or directory destination (str): Destination file or directory (where to copy). Returns: bool: True if the operation is successful, False otherwise. """ if os.path.isdir(source): ...

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def join(self, network): """ Join a zerotier network :param network: network id to join :return: """ args = {'network': network} self._network_chk.check(args) response = self._client.raw('zerotier.join', args) result = response.get() if r...

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def course_register_user(self, course, username=None, password=None, force=False): """ Register a user to the course :param course: a Course object :param username: The username of the user that we want to register. If None, uses self.session_username() :param password: Password ...

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def match_best_pdb_chains(pdb1, pdb1_name, pdb2, pdb2_name, cut_off = 60.0, use_seqres_sequences_if_possible = True): '''A wrapper function for match_pdb_chains. This function only takes the best match. The return value is a dict mapping chain_id_in_pdb1 -> None or a tuple (chain_id_in_pdb_2, pe...

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def __dbfHeader(self): """Writes the dbf header and field descriptors.""" f = self.__getFileObj(self.dbf) f.seek(0) version = 3 year, month, day = time.localtime()[:3] year -= 1900 # Remove deletion flag placeholder from fields for field in self.fi...

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def _import(self, name): ''' Import namespace package ''' mod = __import__(name) components = name.split('.') for comp in components[1:]: mod = getattr(mod, comp) return mod

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def wave_units(self, units): """ A setter for the wavelength units Parameters ---------- units: str, astropy.units.core.PrefixUnit The wavelength units """ # Make sure it's length units if not units.is_equivalent(q.m): raise ValueE...

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def tokens(self): """ Return a list of (type, value) tokens. """ if not self._tokens: self._tokens = list(self.tokenise(self.route)) return self._tokens

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def convert_softmax(node, **kwargs): """Map MXNet's softmax operator attributes to onnx's Softmax operator and return the created node. """ name, input_nodes, attrs = get_inputs(node, kwargs) axis = int(attrs.get("axis", -1)) softmax_node = onnx.helper.make_node( "Softmax", inp...

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def get_or_set_hash(uri, length=8, chars='abcdefghijklmnopqrstuvwxyz0123456789!@#$%^&*(-_=+)'): ''' Perform a one-time generation of a hash and write it to sdb. If that value has already been set return the value instead. This is useful for generating passwords or keys that are specific...

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def get_ip(request): """ Retrieves the remote IP address from the request data. If the user is behind a proxy, they may have a comma-separated list of IP addresses, so we need to account for that. In such a case, only the first IP in the list will be retrieved. Also, some hosts that use a proxy w...

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def size(self, destination): """ Size of the queue for specified destination. @param destination: The queue destination (e.g. /queue/foo) @type destination: C{str} @return: The number of frames in specified queue. @rtype: C{int} """ if not destination in...

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def update_sg(self, context, sg, rule_id, action): """Begins the async update process.""" db_sg = db_api.security_group_find(context, id=sg, scope=db_api.ONE) if not db_sg: return None with context.session.begin(): job_body = dict(action="%s sg rule %s" % (action,...

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def filter(self, **search_args): """ Get a filtered list of resources :param search_args: To be translated into ?arg1=value1&arg2=value2... :return: A list of resources """ search_args = search_args or {} raw_resources = [] for url, paginator_params in se...

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def run(self, ipyclient=None, ): """ Run a batch of dstat tests on a list of tests, where each test is a dictionary mapping sample names to {p1 - p4} (and sometimes p5). Parameters modifying the behavior of the run, such as the number of bootstrap replicates (n...

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def collect(self): """ Collector Passenger stats """ if not os.access(self.config["bin"], os.X_OK): self.log.error("Path %s does not exist or is not executable", self.config["bin"]) return {} dict_stats = self.get_passenger_memo...

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def open(filename): """Open a file in read only mode using the encoding detected by detect_encoding(). """ buffer = _builtin_open(filename, 'rb') try: encoding, lines = detect_encoding(buffer.readline) buffer.seek(0) text = TextIOWrapper(buffer, encoding, line_buffering=True) text.mode = 'r' return text ...

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def allow_client_outgoing(self, application_sid, **kwargs): """ Allow the user of this token to make outgoing connections. Keyword arguments are passed to the application. :param str application_sid: Application to contact """ scope = ScopeURI('client', 'outgoing', {'app...

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def checkKey(self, key=None): ''' Checks that an API key is valid. :param str key: (optional) A key that you want to check the validity of. Defaults to the one provided on initialization. :returns: If the key is valid, this method will return ``True``. :rtype: `bool` :ra...

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def verifyUpdatewcs(fname): """ Verify the existence of WCSNAME in the file. If it is not present, report this to the user and raise an exception. Returns True if WCSNAME was found in all SCI extensions. """ updated = True numsci,extname = count_sci_extensions(fname) for n in range(1,n...

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def get_album(self, id): """Return information about this album.""" url = self._base_url + "/3/album/{0}".format(id) json = self._send_request(url) return Album(json, self)

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def _set_format_scope(self, fmt): """ Opens the format scope. """ self._prev_fmt = QtGui.QTextCharFormat(fmt) self._prev_fmt_closed = False

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def _merge_list_of_keys_into_dict(cls, data, keys, value, index=0): """Recursively merge list of keys that points to the given value into data. Will override a primitive value with another primitive value, but will not override a primitive with a dictionary. For example: Given the dictionary {'a':...

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def process_raw_data(cls, raw_data): """Create a new model using raw API response.""" properties = raw_data.get("properties", {}) raw_content = properties.get("ipConfiguration", None) if raw_content is not None: resource = Resource.from_raw_data(raw_content) prop...

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def _bbvi_fit(self, optimizer='RMSProp', iterations=1000, print_progress=True, start_diffuse=False, **kwargs): """ Performs Black Box Variational Inference Parameters ---------- posterior : method Hands bbvi_fit a posterior object optimizer : string ...

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def _requirements_to_dict(rs): """Convert supported requirements into dictionary for output. """ out = [] added = set([]) for r in rs: if r["class"] == "DockerRequirement" and "docker" not in added: added.add("docker") out.append({"requirement_type": "docker", "value"...

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def init_app(self, app, sqla, namespace='api', route_prefix='/api'): """ Initialize the adapter if it hasn't already been initialized. :param app: Flask application :param sqla: Flask-SQLAlchemy instance :param namespace: Prefixes all generated routes :param route_prefix...

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def _analyze_func_string(func_string): """ Analyze given functiion string an extract: * function name * function arguments * function keyword arguments All given arguments must by of type string, int/float or list. :param func_string: string of the function :return: function name, arg...

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def evaluate_call_args(self, calculator): """Interpreting this literal as a function call, return a 2-tuple of ``(args, kwargs)``. """ args = [] kwargs = OrderedDict() # Sass kwargs preserve order for var_node, value_node in self.argpairs: value = value_node....

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def start(self, wait=False): """Start a task. This function depends on the underlying implementation of _start, which any subclass of ``Task`` should implement. Args: wait (bool): Whether or not to wait on the task to finish before returning from this functi...

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def undecorate(func): """Returns the decorator and the undecorated function of given object.""" orig_call_wrapper = lambda x: x for call_wrapper, unwrap in SUPPORTED_DECORATOR.items(): if isinstance(func, call_wrapper): func = unwrap(func) orig_call_wrapper = call_wrapper ...

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