text stringlengths 75 104k | code_tokens list | avg_line_len float64 7.91 980 | score float64 0 0.18 |
|---|---|---|---|
def raw_row_generator(self):
"""Like rowgenerator, but does not try to create a row processor table"""
from rowgenerators import get_generator
self.doc.set_sys_path() # Set sys path to package 'lib' dir in case of python function generator
ru = self.resolved_url
try:
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def push_images():
# type: () -> None
""" Push all project docker images to a remote registry. """
registry = conf.get('docker.registry')
docker_images = conf.get('docker.images', [])
if registry is None:
log.err("You must define docker.registry conf variable to push images")
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def import_attribute(name):
"""
Return an attribute from a dotted path name (e.g. "path.to.func").
Copied from nvie's rq https://github.com/nvie/rq/blob/master/rq/utils.py
"""
if hasattr(name, '__call__'):
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def countedArray( expr, intExpr=None ):
"""Helper to define a counted list of expressions.
This helper defines a pattern of the form::
integer expr expr expr...
where the leading integer tells how many expr expressions follow.
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def get_projects(self, **kwargs):
"""Get a user's project.
:param str login: User's login (Default: self._login)
:return: JSON
"""
_login = kwargs.get('login', self._login)
search_url = SEARCH_URL.format(login=_login)
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def auto_watering(self):
"""Return if zone is configured to automatic watering."""
value = "zone{}".format(self.id)
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def validate_tempi(tempi, reference=True):
"""Checks that there are two non-negative tempi.
For a reference value, at least one tempo has to be greater than zero.
Parameters
----------
tempi : np.ndarray
length-2 array of tempo, in bpm
reference : bool
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def _contentful_user_agent(self):
"""
Sets the X-Contentful-User-Agent header.
"""
header = {}
from . import __version__
header['sdk'] = {
'name': 'contentful-management.py',
'version': __version__
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def create(self, request, *args, **kwargs):
"""
Run **POST** against */api/alerts/* to create or update alert. If alert with posted scope and
alert_type already exists - it will be updated. Only users with staff privileges can create alerts.
Request example:
.. code-block:: jav... | [
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def Floor(input_vertex: vertex_constructor_param_types, label: Optional[str]=None) -> Vertex:
"""
Applies the Floor operator to a vertex.
This maps a vertex to the biggest integer less than or equal to its value
:param input_vertex: the vertex to be floor'd
"""
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def timeid(self, data: ['SASdata', str] = None,
by: str = None,
id: str = None,
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procopts: str = None,
stmtpassthrough: str = None,
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def yoffset(self, value):
"""gets/sets the yoffset"""
if self._yoffset != value and \
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def exec_cluster(config_file, cmd, docker, screen, tmux, stop, start,
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"""Runs a command on the specified cluster.
Arguments:
config_file: path to the cluster yaml
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def swap(self):
'''Swap stereo channels. If the input is not stereo, pairs of channels
are swapped, and a possible odd last channel passed through.
E.g., for seven channels, the output order will be 2, 1, 4, 3, 6, 5, 7.
See Also
----------
remix
'''
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def set_sensor_thresholds(self, sensor_number, lun=0,
unr=None, ucr=None, unc=None,
lnc=None, lcr=None, lnr=None):
"""Set the sensor thresholds that are not 'None'
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def __get_features_for_observation(self, data_frame=None, observation='LA-LL',
skip_id=None, last_column_is_id=False):
"""
Extract the features for a given observation from a data frame
:param data_frame: data frame to get features from
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def pow2_quantized_convolution(inp, outmaps, kernel,
pad=None, stride=None, dilation=None, group=1,
w_init=None, b_init=None,
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def descr_prototype(self, buf):
"""
Describe the prototype ("head") of the function.
"""
state = "define" if self.blocks else "declare"
ret = self.return_value
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def _get_first_import(node, context, name, base, level, alias):
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"""
fullname = "%s.%s" % (base, name) if base else name
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def _getPastEvents(self, request):
"""Return the past events in this site."""
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def dump_to_string(self, cnf, **kwargs):
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def initial(self, request, *args, **kwargs):
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* change queryset to return only devices of current node
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super(NodeDeviceList, self).initial(request, *args, **kwargs)
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def main(argString=None):
"""Check for duplicated samples in a tfam/tped file.
:param argString: the options
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def citedReferencesRetrieve(self, queryId, count=100, offset=1,
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def on_fork():
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def finish_parse(self, last_lineno_seen):
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def runCommandSplits(splits, silent=False, shell=False):
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Run a shell command given the command's parsed command line
"""
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def get_range_response(self, range_start, range_end, sort_order=None,
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def detect_erc20_unindexed_event_params(contract):
"""
Detect un-indexed ERC20 event parameters in a given contract.
:param contract: The contract to check ERC20 events for un-indexed parameters in.
:return: A list of tuple(event, parameter) of parameters which should be indexed.
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def result_report_class_wise(self):
"""Report class-wise results
Returns
-------
str
result report in string format
"""
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"... | 28.757576 | 0.002039 |
def _import(klass):
'''1) Get a reference to the module
2) Check the file that module's imported from
3) If that file's been updated, force a reload of that module
return it'''
mod = __import__(klass.rpartition('.')[0])
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def overview(self, tag=None, fromdate=None, todate=None):
"""
Gets a brief overview of statistics for all of your outbound email.
"""
return self.call("GET", "/stats/outbound", tag=tag, fromdate=fromdate, todate=todate) | [
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def get_hook_model():
"""
Returns the Custom Hook model if defined in settings,
otherwise the default Hook model.
"""
from rest_hooks.models import Hook
HookModel = Hook
if getattr(settings, 'HOOK_CUSTOM_MODEL', None):
HookModel = get_module(settings.HOOK_CUSTOM_MODEL)
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def subkeys(self, path):
"""
A generalized form that can return multiple subkeys.
"""
for _ in subpaths_for_path_range(path, hardening_chars="'pH"):
yield self.subkey(_) | [
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def img_src_finder(pipeline_index,
soup,
finder_image_urls=[],
*args, **kwargs):
"""
Find image URL in <img>'s src attribute
"""
now_finder_image_urls = []
for img in soup.find_all('img'):
src = img.get('src', None)
if src:
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def addPolicyURI(self, policy_uri):
"""Add a authentication policy to this response
This method is intended to be used by the provider to add a
policy that the provider conformed to when authenticating the user.
@param policy_uri: The identifier for the preferred type of
au... | [
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def filter_desc(self, graintype=None, group=None, reference=None,
size=None, phase=None):
'''
This routine is to filter for description elements. You can
check what is available in the description by running,
>>> i.header_desc()
where i is the instance you ... | [
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"... | 38.159091 | 0.003289 |
def set_property_filter(filter_proto, name, op, value):
"""Set property filter contraint in the given datastore.Filter proto message.
Args:
filter_proto: datastore.Filter proto message
name: property name
op: datastore.PropertyFilter.Operation
value: property value
Returns:
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def _font_name(self, ufo):
"""Generate a postscript-style font name."""
family_name = (
ufo.info.familyName.replace(" ", "")
if ufo.info.familyName is not None
else "None"
)
style_name = (
ufo.info.styleName.replace(" ", "")
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def wv45(msg):
"""Wake vortex.
Args:
msg (String): 28 bytes hexadecimal message string
Returns:
int: Wake vortex level. 0=NIL, 1=Light, 2=Moderate, 3=Severe
"""
d = hex2bin(data(msg))
if d[12] == '0':
return None
ws = bin2int(d[13:15])
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def fake2db_couchdb_initiator(self, number_of_rows, name=None, custom=None):
'''Main handler for the operation
'''
rows = number_of_rows
db = self.database_caller_creator(name)
if custom:
self.custom_db_creator(rows, db, custom)
sys.exit(0)
... | [
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async def get_all_tracks(self) -> List[PlaylistTrack]:
"""Get all playlist tracks from the playlist.
Returns
-------
tracks : List[PlaylistTrack]
The playlists tracks.
"""
if isinstance(self._tracks, PartialTracks):
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def ekrcec(handle, segno, recno, column, lenout, nelts=_SPICE_EK_EKRCEX_ROOM_DEFAULT):
"""
Read data from a character column in a specified EK record.
http://naif.jpl.nasa.gov/pub/naif/toolkit_docs/C/cspice/ekrcec_c.html
:param handle: Handle attached to EK file.
:type handle: int
:param segno... | [
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def setPageCount( self, pageCount ):
"""
Sets the number of pages that this widget holds.
:param pageCount | <int>
"""
if ( pageCount == self._pageCount ):
return
pageCount = max(1, pageCount)
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def determine_reference_direction_fast(nickname, server,
possible_autonomous_profiles=None,
possible_component_profiles=None):
"""
Determine CIM_ReferenceProfile Antecedent/Dependent direction from
server data and a list of known ... | [
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def summary_permutation(context_counts,
context_to_mut,
seq_context,
gene_seq,
score_dir,
num_permutations=10000,
min_frac=0.0,
min_recur=2,
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def patch_namespaced_pod_template(self, name, namespace, body, **kwargs): # noqa: E501
"""patch_namespaced_pod_template # noqa: E501
partially update the specified PodTemplate # noqa: E501
This method makes a synchronous HTTP request by default. To make an
asynchronous HTTP request, ... | [
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def get_hist(rfile, histname, get_overflow=False):
"""Read a 1D Histogram."""
import root_numpy as rnp
rfile = open_rfile(rfile)
hist = rfile[histname]
xlims = np.array(list(hist.xedges()))
bin_values = rnp.hist2array(hist, include_overflow=get_overflow)
rfile.close()
return bin_values,... | [
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def subcmd_bootstrap_parser(subcmd):
""" bootstrap subcommand """
subcmd.add_argument(
'--broker',
action='store',
dest='broker',
help=u'Route to the Ansible Service Broker'
)
subcmd.add_argument(
'--secure',
action='store_true',
dest='verify',
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def parse_html(html):
""" Create an lxml.html.HtmlElement from a string with html.
XXX: mostly copy-pasted from parsel.selector.create_root_node
"""
body = html.strip().replace('\x00', '').encode('utf8') or b'<html/>'
parser = lxml.html.HTMLParser(recover=True, encoding='utf8')
root = lxml.etree... | [
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def _get_metadata(cls, request, response, head=None):
"""Parses out the head and link properties based on the HTTP Request
from the client, and the Protobuf response from the validator.
"""
head = response.get('head_id', head)
metadata = {'link': cls._build_url(request, head=head... | [
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def make(parser):
"""DEPRECATED
prepare OpenStack basic environment"""
s = parser.add_subparsers(
title='commands',
metavar='COMMAND',
help='description',
)
def gen_pass_f(args):
gen_pass()
gen_pass_parser = s.add_parser('gen-pass', help='generate the passwor... | [
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def update(self, vrfs):
"""
Method to update vrf's
:param vrfs: List containing vrf's desired to updated
:return: None
"""
data = {'vrfs': vrfs}
vrfs_ids = [str(vrf.get('id')) for vrf in vrfs]
return super(ApiVrf, self).put('api/v3/vrf/%s/' %
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def make_log_record_output(category, level, message,
format=None, datefmt=None, **kwargs):
"""
Create the output for a log record, like performed by :mod:`logging` module.
:param category: Name of the logger (as string or None).
:param level: Log level (as number).
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def update_contact(self, um_from_user, um_to_user, message):
""" Get or update a contacts information """
contact, created = self.get_or_create(um_from_user,
um_to_user,
message)
# If the contact already... | [
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def controlprompt_cmd(self, cmd):
"""Perform a "controlpromptentry" command."""
data = tags.string_tag('cmbe', cmd) + tags.uint8_tag('cmcc', 0)
return self.daap.post(_CTRL_PROMPT_CMD, data=data) | [
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def _apply_filters(self, p_todos):
""" Applies the filters to the list of todo items. """
result = p_todos
for _filter in sorted(self._filters, key=lambda f: f.order):
result = _filter.filter(result)
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def uninstall(path, restart=False):
'''
Uninstall a specific KB.
Args:
path (str):
The full path to the msu file to uninstall. This can also be just
the name of the KB to uninstall
restart (bool):
``True`` to force a restart if required by the installat... | [
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def _get_data_bounds(data_bounds, pos=None, length=None):
""""Prepare data bounds, possibly using min/max of the data."""
if data_bounds is None or (isinstance(data_bounds, string_types) and
data_bounds == 'auto'):
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def validate(self):
'''Validate required headers and validate notification headers'''
for header in self._requiredHeaders:
if not self.headers.get(header, False):
raise errors.ParseError('Missing Registration Header: ' + header)
for notice in self.notifications:
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def signed_token_generator(private_pem, **kwargs):
"""
:param private_pem:
"""
def signed_token_generator(request):
request.claims = kwargs
return common.generate_signed_token(private_pem, request)
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def join_right_in(self, *objs):
"""
Create a join condition, connect B and C
"""
if not objs:
return self.table.c[self.fielda]!=self.table.c[self.fielda]
else:
keys = get_objs_columns(objs, self.reference_fieldname)
return (self.table.c[self.fi... | [
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def selectize_tags_media(media_type='css',name=''):
"""
Usage:
------
To include css media:
selectize_tags_media 'css' <theme>
To include Selectize Scripts:
selectize_tags_media 'js'
To include Selectize Scripts and Jquery:
selectize_tags_media 'js' 'jquery'
"""
if media_type=='js':
str_script='<script s... | [
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def get_service_regex(base_url, service_url, sub_service):
"""Get the regex for a given service.
:param base_url: string - Base URI
:param service_url: string - Service URI under the Base URI
:param sub_service: boolean - is the Service URI for a sub-service?
:returns: Python R... | [
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def fasta(self):
"""Generates sequence data for the protein in FASTA format."""
max_line_length = 79
fasta_str = '>{0}:{1}|PDBID|CHAIN|SEQUENCE\n'.format(
self.parent.id.upper(), self.id)
seq = self.sequence
split_seq = [seq[i: i + max_line_length]
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async def run(self):
"""Entrypoint to route messages between plugins."""
logging.info('Starting message router...')
coroutines = set()
while True:
coro = self._poll_channel()
coroutines.add(coro)
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def _terminate_procs(procs):
"""
Terminate all processes in the process dictionary
"""
logging.warn("Stopping all remaining processes")
for proc, g in procs.values():
logging.debug("[%s] SIGTERM", proc.pid)
try:
proc.terminate()
except OSError as e:
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def values(self, predicate=None):
"""
Returns a list clone of the values contained in this map or values of the entries which are filtered with
the predicate if provided.
**Warning:
The list is NOT backed by the map, so changes to the map are NOT reflected in the list, and
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def clear_state(self, activity, agent, registration=None):
"""Clear state(s) with specified activity and agent
:param activity: Activity object of state(s) to be deleted
:type activity: :class:`tincan.activity.Activity`
:param agent: Agent object of state(s) to be deleted
:type ... | [
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def register_rpc(name=None):
"""Decorator. Allows registering a function for RPC.
* http://uwsgi.readthedocs.io/en/latest/RPC.html
Example:
.. code-block:: python
@register_rpc()
def expose_me():
do()
:param str|unicode name: RPC function name to ass... | [
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def find_project(self): # type: () -> List[str]
"""
Get all candidate projects
:return:
"""
folders = [f for f in os.listdir(".") if os.path.isdir(f)]
candidates = []
setup = self.setup_py_source()
for folder in folders:
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def filter(self, query: Query, entity: type) -> Tuple[Query, Any]:
"""Apply the `_method` to all childs of the node.
:param query: The sqlachemy query.
:type query: Query
:param entity: The entity model of the query.
:type entity: type
:return: A tuple with in ... | [
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def get_modified_date(parsed, raw):
'Return best possible guess to post modification timestamp.'
if parsed: return feedparser_ts(parsed)
if not raw: return None
# Parse weird timestamps that feedparser can't handle, e.g.: July 30, 2013
ts, val = None, raw.replace('_', ' ')
if not ts:
# coreutils' "date" parses... | [
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def np(numpy_feval, name=None, allow_extra_outputs=False):
"""Creates a custom evaluation metric that receives its inputs as numpy arrays.
Parameters
----------
numpy_feval : callable(label, pred)
Custom evaluation function that receives labels and predictions for a minibatch
as numpy a... | [
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def _set_hundredgigabitethernet(self, v, load=False):
"""
Setter method for hundredgigabitethernet, mapped from YANG variable /interface/hundredgigabitethernet (list)
If this variable is read-only (config: false) in the
source YANG file, then _set_hundredgigabitethernet is considered as a private
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def tokenize_words(self, text):
"""Tokenize an input string into a list of words (with punctuation removed)."""
return [
self.strip_punctuation(word) for word in text.split(' ')
if self.strip_punctuation(word)
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def get(self):
"""
:return: response stats dict
"""
stats = {}
if self.start_date is not None:
stats["start_date"] = self.start_date
if self.end_date is not None:
stats["end_date"] = self.end_date
if self.aggregated_by is not None:
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def submit_registration_form(self, form):
"""Submit a registration form.
[client only]
:Parameters:
- `form`: the filled-in form. When form is `None` or its type is
"cancel" the registration is to be canceled.
:Types:
- `form`: `pyxmpp.jabber.data... | [
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def sendall(self, s):
"""
Send data to the channel, without allowing partial results. Unlike
`send`, this method continues to send data from the given string until
either all data has been sent or an error occurs. Nothing is returned.
:param str s: data to send.
:rais... | [
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def parse_coach_bsites_inf(infile):
"""Parse the Bsites.inf output file of COACH and return a list of rank-ordered binding site predictions
Bsites.inf contains the summary of COACH clustering results after all other prediction algorithms have finished
For each site (cluster), there are three lines:
... | [
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def SampleSum(dists, n):
"""Draws a sample of sums from a list of distributions.
dists: sequence of Pmf or Cdf objects
n: sample size
returns: new Pmf of sums
"""
pmf = MakePmfFromList(RandomSum(dists) for i in xrange(n))
return pmf | [
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def download_s3(bucket_name, file_key, file_path, force=False):
"""Download a remote file from S3.
"""
file_path = path(file_path)
bucket = open_s3(bucket_name)
file_dir = file_path.dirname()
file_dir.makedirs()
s3_key = bucket.get_key(file_key)
if file_path.exists():
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def quick_url(comment):
"""Return the URL for the comment without fetching its submission."""
def to_id(fullname):
return fullname.split('_', 1)[1]
return ('http://www.reddit.com/r/{}/comments/{}/_/{}?context=3'
.format(comment.subreddit.display_name, to_id(comment.link_id),
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def safe_joinall(greenlets, timeout=None, raise_error=False):
"""
Wrapper for gevent.joinall if the greenlet that waits for the joins is killed, it kills all the greenlets it
joins for.
"""
greenlets = list(greenlets)
try:
gevent.joinall(greenlets, timeout=timeout, raise_error=raise_erro... | [
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def setup_versioneer():
"""
Generate (temporarily) versioneer.py file in project root directory
:return:
"""
try:
# assume versioneer.py was generated using "versioneer install" command
import versioneer
versioneer.get_version()
except ImportError:
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def update(self, dtrain, iteration, fobj=None):
"""
Update for one iteration, with objective function calculated internally.
Parameters
----------
dtrain : DMatrix
Training data.
iteration : int
Current iteration number.
fobj : function
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def _get_encrypted_credentials(self, context):
"""
[MS-CSSP] 3.1.5 Processing Events and Sequencing Rules - Step 5
https://msdn.microsoft.com/en-us/library/cc226791.aspx
After the client has verified the server's authenticity, it encrypts
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def _exponentiate_general_case(pauli_term, param):
"""
Returns a Quil (Program()) object corresponding to the exponential of
the pauli_term object, i.e. exp[-1.0j * param * pauli_term]
:param PauliTerm pauli_term: A PauliTerm to exponentiate
:param float param: scalar, non-complex, value
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def _check_disabled(self):
"""Check if health check is disabled.
It logs a message if health check is disabled and it also adds an item
to the action queue based on 'on_disabled' setting.
Returns:
True if check is disabled otherwise False.
"""
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def set_(key, value, setting=None, conf_file=_DEFAULT_CONF):
'''
Set a new value for a specific configuration line.
:param str key: The command or block to configure.
:param str value: The command value or command of the block specified by the key parameter.
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def sort(self, *args, **kwargs):
"""Sort the MultiMap.
Takes the same arguments as list.sort, and operates on tuples of
(key, value) pairs.
>>> m = MutableMultiMap()
>>> m['c'] = 1
>>> m['b'] = 3
>>> m['a'] = 2
>>> m.sort()
>>> m.... | [
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def uninstall(**kwargs):
"""Uninstall the current pre-commit hook."""
force = kwargs.get('force')
restore_legacy = kwargs.get('restore_legacy')
colorama.init(strip=kwargs.get('no_color'))
git_dir = current_git_dir()
if git_dir is None:
output(NOT_GIT_REPO_MSG)
exit(1)
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".",
"init",
"(",
"strip",
"=",
"kwargs",
".",
"get",... | 32 | 0.001784 |
def main():
"""
The main function of the Andes command-line tool.
This function executes the following workflow:
* Parse the command line inputs
* Show the tool preamble
* Output the requested helps, edit/save configs or remove outputs. Exit
the main program if any of the above is ex... | [
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"# configure stream handler verbose level",
"config_logger",
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"=",
"misc",
".",
"get_... | 29.027778 | 0.000925 |
def _move_here(self):
"""Move the cursor to this item."""
cu = self.scraper.current_item
# Already here?
if self is cu:
return
# A child?
if cu.items and self in cu.items:
self.scraper.move_to(self)
return
# A parent?
if... | [
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"self"... | 31.272727 | 0.002821 |
def do_up(self, arg):
"""Run up migration with name or numeric id matching arg"""
print "running up migration"
self.manager.run(arg, Direction.UP) | [
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] | 41.75 | 0.011765 |
def modified(self, base: pathlib.PurePath = pathlib.PurePath()) \
-> Iterator[str]:
"""
Find the paths of modified files. There is no option to include
intermediate directories, as all files and directories exist in both
the left and right trees.
:param base: The bas... | [
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"# N.B. this method will only ever return files, as directories cannot",
"# be \"modified\"",
"if",
... | 41.8 | 0.00312 |
def get_all(
self, target_resource=None, target_resource_group=None, target_resource_type=None, monitor_service=None, monitor_condition=None, severity=None, smart_group_state=None, time_range=None, page_count=None, sort_by=None, sort_order=None, custom_headers=None, raw=False, **operation_config):
"... | [
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"... | 55.874016 | 0.002354 |
def random_outdir(): # type: () -> Text
""" Return the random directory name chosen to use for tool / workflow output """
# compute this once and store it as a function attribute - each subsequent call will return the same value
if not hasattr(random_outdir, 'outdir'):
random_outdir.outdir = '/' + ... | [
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"'outdir'",
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"outdir",
"=... | 72.666667 | 0.00907 |
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