kejian/codesearchnet-python-pep8-full · Datasets at Hugging Face

text stringlengths 75 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 0.18
def retrieve_handle_record(self, handle, handlerecord_json=None): ''' Retrieve a handle record from the Handle server as a dict. If there is several entries of the same type, only the first one is returned. Values of complex types (such as HS_ADMIN) are transformed to strings. ...	[ "def", "retrieve_handle_record", "(", "self", ",", "handle", ",", "handlerecord_json", "=", "None", ")", ":", "LOGGER", ".", "debug", "(", "'retrieve_handle_record...'", ")", "handlerecord_json", "=", "self", ".", "__get_handle_record_if_necessary", "(", "handle", "...	47.107143	0.002972
def conditional_loss_ratio(loss_ratios, poes, probability): """ Return the loss ratio corresponding to the given PoE (Probability of Exceendance). We can have four cases: 1. If `probability` is in `poes` it takes the bigger corresponding loss_ratios. 2. If it is in `(poe1, poe2)` wher...	[ "def", "conditional_loss_ratio", "(", "loss_ratios", ",", "poes", ",", "probability", ")", ":", "assert", "len", "(", "loss_ratios", ")", ">=", "3", ",", "loss_ratios", "rpoes", "=", "poes", "[", ":", ":", "-", "1", "]", "if", "probability", ">", "poes",...	37.916667	0.000536
def find_by_b64id(self, _id, kwargs): """ Pass me a base64-encoded ObjectId """ return self.find_one({"_id": ObjectId(base64.b64decode(_id))}, kwargs)	[ "def", "find_by_b64id", "(", "self", ",", "_id", ",", "", "", "kwargs", ")", ":", "return", "self", ".", "find_one", "(", "{", "\"_id\"", ":", "ObjectId", "(", "base64", ".", "b64decode", "(", "_id", ")", ")", "}", ",", "", "", "kwargs", ")" ]	30.333333	0.016043
def images(cam): """Extract images from input stream to jpg files. Args: cam: Input stream of raw rosbag messages. Returns: File instances for images of input stream. """ # Set output stream title and pull first message yield marv.set_header(title=cam.topic) # Fetch and pr...	[ "def", "images", "(", "cam", ")", ":", "# Set output stream title and pull first message", "yield", "marv", ".", "set_header", "(", "title", "=", "cam", ".", "topic", ")", "# Fetch and process first 20 image messages", "name_template", "=", "'%s-{}.jpg'", "%", "cam", ...	30.533333	0.001058
def manipulate_multiproc_safe(traj): """ Target function that manipulates the trajectory. Stores the current name of the process into the trajectory and overwrites previous settings. :param traj: Trajectory container with multiprocessing safe storage service """ # Manipulate the...	[ "def", "manipulate_multiproc_safe", "(", "traj", ")", ":", "# Manipulate the data in the trajectory", "traj", ".", "last_process_name", "=", "mp", ".", "current_process", "(", ")", ".", "name", "# Store the manipulated data", "traj", ".", "results", ".", "f_store", "(...	28.4375	0.002128
def parse(self, fo): """ Convert MDmodule output to motifs Parameters ---------- fo : file-like File object containing MDmodule output. Returns ------- motifs : list List of Motif instances. """ motifs = []...	[ "def", "parse", "(", "self", ",", "fo", ")", ":", "motifs", "=", "[", "]", "nucs", "=", "{", "\"A\"", ":", "0", ",", "\"C\"", ":", "1", ",", "\"G\"", ":", "2", ",", "\"T\"", ":", "3", "}", "p", "=", "re", ".", "compile", "(", "r'(\\d+)\\s+(\\...	30.142857	0.010327
def diff(a, b, presorted=False, buffersize=None, tempdir=None, cache=True, strict=False): """ Find the difference between rows in two tables. Returns a pair of tables. E.g.:: >>> import petl as etl >>> a = [['foo', 'bar', 'baz'], ... ['A', 1, True], ... ['...	[ "def", "diff", "(", "a", ",", "b", ",", "presorted", "=", "False", ",", "buffersize", "=", "None", ",", "tempdir", "=", "None", ",", "cache", "=", "True", ",", "strict", "=", "False", ")", ":", "if", "not", "presorted", ":", "a", "=", "sort", "("...	33.081967	0.000481
def rm_alias(alias): ''' Remove an entry from the aliases file CLI Example: .. code-block:: bash salt '*' aliases.rm_alias alias ''' if not get_target(alias): return True lines = __parse_aliases() out = [] for (line_alias, line_target, line_comment) in lines: ...	[ "def", "rm_alias", "(", "alias", ")", ":", "if", "not", "get_target", "(", "alias", ")", ":", "return", "True", "lines", "=", "__parse_aliases", "(", ")", "out", "=", "[", "]", "for", "(", "line_alias", ",", "line_target", ",", "line_comment", ")", "in...	20.857143	0.002183
def reload(self): ''' Clear plugin manager state and reload plugins. This method will make use of :meth:`clear` and :meth:`load_plugin`, so all internal state will be cleared, and all plugins defined in :data:`self.app.config['plugin_modules']` will be loaded. ''' ...	[ "def", "reload", "(", "self", ")", ":", "self", ".", "clear", "(", ")", "for", "plugin", "in", "self", ".", "app", ".", "config", ".", "get", "(", "'plugin_modules'", ",", "(", ")", ")", ":", "self", ".", "load_plugin", "(", "plugin", ")" ]	38.727273	0.004587
def sharded_filenames(filename_prefix, num_shards): """Sharded filenames given prefix and number of shards.""" shard_suffix = "%05d-of-%05d" return [ "%s-%s" % (filename_prefix, shard_suffix % (i, num_shards)) for i in range(num_shards) ]	[ "def", "sharded_filenames", "(", "filename_prefix", ",", "num_shards", ")", ":", "shard_suffix", "=", "\"%05d-of-%05d\"", "return", "[", "\"%s-%s\"", "%", "(", "filename_prefix", ",", "shard_suffix", "%", "(", "i", ",", "num_shards", ")", ")", "for", "i", "in"...	36	0.015504
def _git_command(params, cwd): """ Executes a git command, returning the output :param params: A list of the parameters to pass to git :param cwd: The working directory to execute git in :return: A 2-element tuple of (stdout, stderr) """ proc = subprocess.Popen( ...	[ "def", "_git_command", "(", "params", ",", "cwd", ")", ":", "proc", "=", "subprocess", ".", "Popen", "(", "[", "'git'", "]", "+", "params", ",", "stdout", "=", "subprocess", ".", "PIPE", ",", "stderr", "=", "subprocess", ".", "STDOUT", ",", "cwd", "=...	23	0.001546
def _normWidth(self, w, maxw): """ Helper for calculating percentages """ if type(w) == type(""): w = ((maxw / 100.0) * float(w[: - 1])) elif (w is None) or (w == "*"): w = maxw return min(w, maxw)	[ "def", "_normWidth", "(", "self", ",", "w", ",", "maxw", ")", ":", "if", "type", "(", "w", ")", "==", "type", "(", "\"\"", ")", ":", "w", "=", "(", "(", "maxw", "/", "100.0", ")", "*", "float", "(", "w", "[", ":", "-", "1", "]", ")", ")",...	29	0.011152
def tange_grun(v, v0, gamma0, a, b): """ calculate Gruneisen parameter for the Tange equation :param v: unit-cell volume in A^3 :param v0: unit-cell volume in A^3 at 1 bar :param gamma0: Gruneisen parameter at 1 bar :param a: volume-independent adjustable parameters :param b: volume-indepen...	[ "def", "tange_grun", "(", "v", ",", "v0", ",", "gamma0", ",", "a", ",", "b", ")", ":", "x", "=", "v", "/", "v0", "return", "gamma0", "", "(", "1.", "+", "a", "", "(", "np", ".", "power", "(", "x", ",", "b", ")", "-", "1.", ")", ")" ]	34.076923	0.002198
def exchange_delete(self, exchange, if_unused=False, nowait=False, ticket=None): """ delete an exchange This method deletes an exchange. When an exchange is deleted all queue bindings on the exchange are cancelled. PARAMETERS: exchange: shortstr ...	[ "def", "exchange_delete", "(", "self", ",", "exchange", ",", "if_unused", "=", "False", ",", "nowait", "=", "False", ",", "ticket", "=", "None", ")", ":", "args", "=", "AMQPWriter", "(", ")", "if", "ticket", "is", "not", "None", ":", "args", ".", "wr...	30.671642	0.001414
def datetime(self): """ Returns a datetime object of the month, day, year, and time the game was played. """ date_string = '%s %s' % (self._date, self._year) date_string = re.sub(r' \(\d+\)', '', date_string) return datetime.strptime(date_string, '%A, %b %d %Y')	[ "def", "datetime", "(", "self", ")", ":", "date_string", "=", "'%s %s'", "%", "(", "self", ".", "_date", ",", "self", ".", "_year", ")", "date_string", "=", "re", ".", "sub", "(", "r' \\(\\d+\\)'", ",", "''", ",", "date_string", ")", "return", "datetim...	38.875	0.006289
def _convert_timedelta_to_seconds(timedelta): """Returns the total seconds calculated from the supplied timedelta. (Function provided to enable running on Python 2.6 which lacks timedelta.total_seconds()). """ days_in_seconds = timedelta.days * 24 * 3600 return int((timedelta.microseconds + (ti...	[ "def", "_convert_timedelta_to_seconds", "(", "timedelta", ")", ":", "days_in_seconds", "=", "timedelta", ".", "days", "", "24", "", "3600", "return", "int", "(", "(", "timedelta", ".", "microseconds", "+", "(", "timedelta", ".", "seconds", "+", "days_in_seco...	46.125	0.007979
def from_cells(cls, cells): """ Creates a MOC from a numpy array representing the HEALPix cells. Parameters ---------- cells : `numpy.ndarray` Must be a numpy structured array (See https://docs.scipy.org/doc/numpy-1.15.0/user/basics.rec.html). The structu...	[ "def", "from_cells", "(", "cls", ",", "cells", ")", ":", "shift", "=", "(", "AbstractMOC", ".", "HPY_MAX_NORDER", "-", "cells", "[", "\"depth\"", "]", ")", "<<", "1", "p1", "=", "cells", "[", "\"ipix\"", "]", "p2", "=", "cells", "[", "\"ipix\"", "]",...	30.185185	0.003567
def plot_calibration_curve(y_true, probas_list, clf_names=None, n_bins=10, title='Calibration plots (Reliability Curves)', ax=None, figsize=None, cmap='nipy_spectral', title_fontsize="large", text_fontsize="medium"): """Plots calibrati...	[ "def", "plot_calibration_curve", "(", "y_true", ",", "probas_list", ",", "clf_names", "=", "None", ",", "n_bins", "=", "10", ",", "title", "=", "'Calibration plots (Reliability Curves)'", ",", "ax", "=", "None", ",", "figsize", "=", "None", ",", "cmap", "=", ...	42.522727	0.000348
def make_close_message(code=1000, message=b''): """Close the websocket, sending the specified code and message.""" return _make_frame(struct.pack('!H%ds' % len(message), code, message), opcode=OPCODE_CLOSE)	[ "def", "make_close_message", "(", "code", "=", "1000", ",", "message", "=", "b''", ")", ":", "return", "_make_frame", "(", "struct", ".", "pack", "(", "'!H%ds'", "%", "len", "(", "message", ")", ",", "code", ",", "message", ")", ",", "opcode", "=", "...	58.5	0.004219
def read_mda(attribute): """Read HDFEOS metadata and return a dict with all the key/value pairs.""" lines = attribute.split('\n') mda = {} current_dict = mda path = [] prev_line = None for line in lines: if not line: continue ...	[ "def", "read_mda", "(", "attribute", ")", ":", "lines", "=", "attribute", ".", "split", "(", "'\\n'", ")", "mda", "=", "{", "}", "current_dict", "=", "mda", "path", "=", "[", "]", "prev_line", "=", "None", "for", "line", "in", "lines", ":", "if", "...	31.47619	0.002201
def get_manifest(self, repo_name, digest=None, version="v1"): ''' get_manifest should return an image manifest for a particular repo and tag. The image details are extracted when the client is generated. Parameters ========== repo_name: reference to the <username>/<reposi...	[ "def", "get_manifest", "(", "self", ",", "repo_name", ",", "digest", "=", "None", ",", "version", "=", "\"v1\"", ")", ":", "accepts", "=", "{", "'config'", ":", "\"application/vnd.docker.container.image.v1+json\"", ",", "'v1'", ":", "\"application/vnd.docker.distrib...	32.733333	0.003956
def send_highspeed(self, data, progress_callback): """Send a script to a device at highspeed, reporting progress. This method takes a binary blob and downloads it to the device as fast as possible, calling the passed progress_callback periodically with updates on how far it has gotten. ...	[ "def", "send_highspeed", "(", "self", ",", "data", ",", "progress_callback", ")", ":", "if", "not", "self", ".", "connected", ":", "raise", "HardwareError", "(", "\"Cannot send a script if we are not in a connected state\"", ")", "if", "isinstance", "(", "data", ","...	43.607143	0.005609
def _sanity_check_registered_locations_parent_locations(query_metadata_table): """Assert that all registered locations' parent locations are also registered.""" for location, location_info in query_metadata_table.registered_locations: if (location != query_metadata_table.root_location and ...	[ "def", "_sanity_check_registered_locations_parent_locations", "(", "query_metadata_table", ")", ":", "for", "location", ",", "location_info", "in", "query_metadata_table", ".", "registered_locations", ":", "if", "(", "location", "!=", "query_metadata_table", ".", "root_loca...	70.75	0.006975
def use_federated_gradebook_view(self): """Pass through to provider GradeSystemLookupSession.use_federated_gradebook_view""" self._gradebook_view = FEDERATED # self._get_provider_session('grade_system_lookup_session') # To make sure the session is tracked for session in self._get_provide...	[ "def", "use_federated_gradebook_view", "(", "self", ")", ":", "self", ".", "_gradebook_view", "=", "FEDERATED", "# self._get_provider_session('grade_system_lookup_session') # To make sure the session is tracked", "for", "session", "in", "self", ".", "_get_provider_sessions", "(",...	50.333333	0.008677
def rebalance_brokers(self): """Rebalance partition-count across brokers within each replication-group.""" for rg in six.itervalues(self.cluster_topology.rgs): rg.rebalance_brokers()	[ "def", "rebalance_brokers", "(", "self", ")", ":", "for", "rg", "in", "six", ".", "itervalues", "(", "self", ".", "cluster_topology", ".", "rgs", ")", ":", "rg", ".", "rebalance_brokers", "(", ")" ]	51.75	0.014286
def code(self, value): """ Set the code of the message. :type value: Codes :param value: the code :raise AttributeError: if value is not a valid code """ if value not in list(defines.Codes.LIST.keys()) and value is not None: raise AttributeError ...	[ "def", "code", "(", "self", ",", "value", ")", ":", "if", "value", "not", "in", "list", "(", "defines", ".", "Codes", ".", "LIST", ".", "keys", "(", ")", ")", "and", "value", "is", "not", "None", ":", "raise", "AttributeError", "self", ".", "_code"...	30.090909	0.005865
def postinit(self, exc=None, cause=None): """Do some setup after initialisation. :param exc: What is being raised. :type exc: NodeNG or None :param cause: The exception being used to raise this one. :type cause: NodeNG or None """ self.exc = exc self.cau...	[ "def", "postinit", "(", "self", ",", "exc", "=", "None", ",", "cause", "=", "None", ")", ":", "self", ".", "exc", "=", "exc", "self", ".", "cause", "=", "cause" ]	29.090909	0.006061
def clean(outputdir, drivers=None): """Remove driver executables from the specified outputdir. drivers can be a list of drivers to filter which executables to remove. Specify a version using an equal sign i.e.: 'chrome=2.2' """ if drivers: # Generate a list of tuples: [(driver_name, request...	[ "def", "clean", "(", "outputdir", ",", "drivers", "=", "None", ")", ":", "if", "drivers", ":", "# Generate a list of tuples: [(driver_name, requested_version)]", "# If driver string does not contain a version, the second element", "# of the tuple is None.", "# Example:", "# [('driv...	40.365854	0.00059
def build_arg_parser2(): """ Build an argument parser using optparse. Use it when python version is 2.5 or 2.6. """ usage_str = "Smatch calculator -- arguments" parser = optparse.OptionParser(usage=usage_str) parser.add_option("-f", "--files", nargs=2, dest="f", type="string", ...	[ "def", "build_arg_parser2", "(", ")", ":", "usage_str", "=", "\"Smatch calculator -- arguments\"", "parser", "=", "optparse", ".", "OptionParser", "(", "usage", "=", "usage_str", ")", "parser", ".", "add_option", "(", "\"-f\"", ",", "\"--files\"", ",", "nargs", ...	65.965517	0.007213
def tie_break(sorted_list, results, prop_key, ndecoys): """ When finding the best ensemble, using "find_best_ensemble," in the event of a tie, we break it by looking at enrichment factors at successively larger FPF values, beginning with the smallest FPF not trained on. :param sorted_list: :param re...	[ "def", "tie_break", "(", "sorted_list", ",", "results", ",", "prop_key", ",", "ndecoys", ")", ":", "# Generate a list of the number of decoys that correspond to the FPF", "# values at which enrichment factors were determined, not including ndecoys, the training value", "ndecoys_list", ...	53.09375	0.008092
def _reduce(self, op, name, axis=0, skipna=True, numeric_only=None, filter_type=None, **kwds): """ perform the reduction type operation if we can """ func = getattr(self, name, None) if func is None: raise TypeError("{klass} cannot perform the operation {op}".format( ...	[ "def", "_reduce", "(", "self", ",", "op", ",", "name", ",", "axis", "=", "0", ",", "skipna", "=", "True", ",", "numeric_only", "=", "None", ",", "filter_type", "=", "None", ",", "", "", "kwds", ")", ":", "func", "=", "getattr", "(", "self", ","...	53	0.006961
def execute(self, context): """Upload a file to Azure Blob Storage.""" hook = WasbHook(wasb_conn_id=self.wasb_conn_id) self.log.info( 'Uploading %s to wasb://%s ' 'as %s'.format(self.file_path, self.container_name, self.blob_name) ) hook.load_file(self.fil...	[ "def", "execute", "(", "self", ",", "context", ")", ":", "hook", "=", "WasbHook", "(", "wasb_conn_id", "=", "self", ".", "wasb_conn_id", ")", "self", ".", "log", ".", "info", "(", "'Uploading %s to wasb://%s '", "'as %s'", ".", "format", "(", "self", ".", ...	44.444444	0.004902
def _split_line(self,data_list,line_num,text): """Builds list of text lines by splitting text lines at wrap point This function will determine if the input text line needs to be wrapped (split) into separate lines. If so, the first wrap point will be determined and the first line appen...	[ "def", "_split_line", "(", "self", ",", "data_list", ",", "line_num", ",", "text", ")", ":", "# if blank line or context separator, just add it to the output list", "if", "not", "line_num", ":", "data_list", ".", "append", "(", "(", "line_num", ",", "text", ")", "...	35.740741	0.005547
def feed_forward(self, input_data, prediction=False): """Propagate forward through the layer Parameters: input_data : ``GPUArray`` Input data to compute activations for. prediction : bool, optional Whether to use prediction model. Only relevant when using ...	[ "def", "feed_forward", "(", "self", ",", "input_data", ",", "prediction", "=", "False", ")", ":", "if", "input_data", ".", "shape", "[", "1", "]", "!=", "self", ".", "W", ".", "shape", "[", "0", "]", ":", "raise", "ValueError", "(", "'Number of outputs...	33.405405	0.003931
def path(self, name): """ Look for files in subdirectory of MEDIA_ROOT using the tenant's domain_url value as the specifier. """ if name is None: name = '' try: location = safe_join(self.location, connection.tenant.domain_url) except Attrib...	[ "def", "path", "(", "self", ",", "name", ")", ":", "if", "name", "is", "None", ":", "name", "=", "''", "try", ":", "location", "=", "safe_join", "(", "self", ".", "location", ",", "connection", ".", "tenant", ".", "domain_url", ")", "except", "Attrib...	33.588235	0.003407
def set_up_logging(logger, level, should_be_quiet): """ Sets up logging for pepe. :param logger: The logger object to update. :param level: Logging level specified at command line. :param should_be_quiet: Boolean value for the -q option. :return: logging level ``...	[ "def", "set_up_logging", "(", "logger", ",", "level", ",", "should_be_quiet", ")", ":", "LOGGING_LEVELS", "=", "{", "'DEBUG'", ":", "logging", ".", "DEBUG", ",", "'INFO'", ":", "logging", ".", "INFO", ",", "'WARNING'", ":", "logging", ".", "WARNING", ",", ...	28.27027	0.000924
def register_lcformat(formatkey, fileglob, timecols, magcols, errcols, readerfunc_module, readerfunc, readerfunc_kwargs=None, normfunc_module=No...	[ "def", "register_lcformat", "(", "formatkey", ",", "fileglob", ",", "timecols", ",", "magcols", ",", "errcols", ",", "readerfunc_module", ",", "readerfunc", ",", "readerfunc_kwargs", "=", "None", ",", "normfunc_module", "=", "None", ",", "normfunc", "=", "None",...	42.264574	0.002073
def answer(self, c, details): """Answer will provide all necessary feedback for the caller Args: c (int): HTTP Code details (dict): Response payload Returns: dict: Response payload Raises: ErrAtlasBadRequest ...	[ "def", "answer", "(", "self", ",", "c", ",", "details", ")", ":", "if", "c", "in", "[", "Settings", ".", "SUCCESS", ",", "Settings", ".", "CREATED", ",", "Settings", ".", "ACCEPTED", "]", ":", "return", "details", "elif", "c", "==", "Settings", ".", ...	33.324324	0.004728
def get_original_field_value(self, name): """ Returns original field value or None """ name = self.get_real_name(name) try: value = self.__original_data__[name] except KeyError: return None try: return value.export_original_da...	[ "def", "get_original_field_value", "(", "self", ",", "name", ")", ":", "name", "=", "self", ".", "get_real_name", "(", "name", ")", "try", ":", "value", "=", "self", ".", "__original_data__", "[", "name", "]", "except", "KeyError", ":", "return", "None", ...	24.4	0.005263
def _val_pt_xml(self): """ The unicode XML snippet containing the ``<c:pt>`` elements containing the values for this series. """ xml = '' for idx, value in enumerate(self._series.values): if value is None: continue xml += ( ...	[ "def", "_val_pt_xml", "(", "self", ")", ":", "xml", "=", "''", "for", "idx", ",", "value", "in", "enumerate", "(", "self", ".", "_series", ".", "values", ")", ":", "if", "value", "is", "None", ":", "continue", "xml", "+=", "(", "' <c:pt ...	32.277778	0.003344
def T(self, ID, sign): """ Returns the term of an object in a sign. """ lon = self.terms[sign][ID] ID = 'T_%s_%s' % (ID, sign) return self.G(ID, 0, lon)	[ "def", "T", "(", "self", ",", "ID", ",", "sign", ")", ":", "lon", "=", "self", ".", "terms", "[", "sign", "]", "[", "ID", "]", "ID", "=", "'T_%s_%s'", "%", "(", "ID", ",", "sign", ")", "return", "self", ".", "G", "(", "ID", ",", "0", ",", ...	36	0.01087
def volume(self, vol, clim=None, method='mip', threshold=None, cmap='grays'): """Show a 3D volume Parameters ---------- vol : ndarray Volume to render. clim : tuple of two floats \| None The contrast limits. The values in the volume are mapp...	[ "def", "volume", "(", "self", ",", "vol", ",", "clim", "=", "None", ",", "method", "=", "'mip'", ",", "threshold", "=", "None", ",", "cmap", "=", "'grays'", ")", ":", "self", ".", "_configure_3d", "(", ")", "volume", "=", "scene", ".", "Volume", "(...	31.942857	0.002604
def update(self, t_obj): """[update table] Arguments: t_obj {[objs of DeclarativeMeta]} -- [update the table] """ if isinstance(t_obj, Iterable): self._session.add_all(t_obj) else: self._session.add(t_obj)	[ "def", "update", "(", "self", ",", "t_obj", ")", ":", "if", "isinstance", "(", "t_obj", ",", "Iterable", ")", ":", "self", ".", "_session", ".", "add_all", "(", "t_obj", ")", "else", ":", "self", ".", "_session", ".", "add", "(", "t_obj", ")" ]	24.818182	0.007067
def isOnSilicon(self, ra_deg, dec_deg, padding_pix=DEFAULT_PADDING): """Returns True if the given location is observable with a science CCD. Parameters ---------- ra_deg : float Right Ascension (J2000) in decimal degrees. dec_deg : float Declination (J20...	[ "def", "isOnSilicon", "(", "self", ",", "ra_deg", ",", "dec_deg", ",", "padding_pix", "=", "DEFAULT_PADDING", ")", ":", "ch", ",", "col", ",", "row", "=", "self", ".", "getChannelColRow", "(", "ra_deg", ",", "dec_deg", ")", "# Modules 3 and 7 are no longer ope...	39.307692	0.00191
def betacf(a, b, x): """ This function evaluates the continued fraction form of the incomplete Beta function, betai. (Adapted from: Numerical Recipies in C.) Usage: lbetacf(a,b,x) """ ITMAX = 200 EPS = 3.0e-7 bm = az = am = 1.0 qab = a + b qap = a + 1.0 qam = a - 1.0 ...	[ "def", "betacf", "(", "a", ",", "b", ",", "x", ")", ":", "ITMAX", "=", "200", "EPS", "=", "3.0e-7", "bm", "=", "az", "=", "am", "=", "1.0", "qab", "=", "a", "+", "b", "qap", "=", "a", "+", "1.0", "qam", "=", "a", "-", "1.0", "bz", "=", ...	26.5625	0.001135
def click_event(event): """On click, bring the cell under the cursor to Life""" grid_x_coord = int(divmod(event.x, cell_size)[0]) grid_y_coord = int(divmod(event.y, cell_size)[0]) world[grid_x_coord][grid_y_coord].value = True color = world[x][y].color_alive.get_as_hex() canvas.itemconfig(canvas...	[ "def", "click_event", "(", "event", ")", ":", "grid_x_coord", "=", "int", "(", "divmod", "(", "event", ".", "x", ",", "cell_size", ")", "[", "0", "]", ")", "grid_y_coord", "=", "int", "(", "divmod", "(", "event", ".", "y", ",", "cell_size", ")", "[...	51.428571	0.002732
def extract_params(params): """ Extracts the values of a set of parameters, recursing into nested dictionaries. """ values = [] if isinstance(params, dict): for key, value in params.items(): values.extend(extract_params(value)) elif isinstance(params, list): for value...	[ "def", "extract_params", "(", "params", ")", ":", "values", "=", "[", "]", "if", "isinstance", "(", "params", ",", "dict", ")", ":", "for", "key", ",", "value", "in", "params", ".", "items", "(", ")", ":", "values", ".", "extend", "(", "extract_param...	30.357143	0.004566
def out_8(library, session, space, offset, data, extended=False): """Write in an 8-bit value from the specified memory space and offset. Corresponds to viOut8* functions of the VISA library. :param library: the visa library wrapped by ctypes. :param session: Unique logical identifier to a session. ...	[ "def", "out_8", "(", "library", ",", "session", ",", "space", ",", "offset", ",", "data", ",", "extended", "=", "False", ")", ":", "if", "extended", ":", "return", "library", ".", "viOut8Ex", "(", "session", ",", "space", ",", "offset", ",", "data", ...	45.055556	0.002415
def _get_brokerclient(self, node_id): """ Get a broker client. :param int node_id: Broker node ID :raises KeyError: for an unknown node ID :returns: :class:`_KafkaBrokerClient` """ if self._closing: raise ClientError("Cannot get broker client for node...	[ "def", "_get_brokerclient", "(", "self", ",", "node_id", ")", ":", "if", "self", ".", "_closing", ":", "raise", "ClientError", "(", "\"Cannot get broker client for node_id={}: {} has been closed\"", ".", "format", "(", "node_id", ",", "self", ")", ")", "if", "node...	41.666667	0.003911
def dtypes(self): """ Return the dtypes in the DataFrame. This returns a Series with the data type of each column. The result's index is the original DataFrame's columns. Columns with mixed types are stored with the ``object`` dtype. See :ref:`the User Guide <basics.dtyp...	[ "def", "dtypes", "(", "self", ")", ":", "from", "pandas", "import", "Series", "return", "Series", "(", "self", ".", "_data", ".", "get_dtypes", "(", ")", ",", "index", "=", "self", ".", "_info_axis", ",", "dtype", "=", "np", ".", "object_", ")" ]	31.735294	0.001799
def pos(self, element = None): ''' Tries to decide about the part of speech. ''' tags = [] if element: if re.search('[\w\|\s]+ [m\|f]\.', element, re.U): tags.append('NN') if '[VERB]' in element: tags.append('VB') if 'adj.' in element and re.search('([\w\|\s]+, [\w\|\s]+)', element, re.U): tags....	[ "def", "pos", "(", "self", ",", "element", "=", "None", ")", ":", "tags", "=", "[", "]", "if", "element", ":", "if", "re", ".", "search", "(", "'[\\w\|\\s]+ [m\|f]\\.'", ",", "element", ",", "re", ".", "U", ")", ":", "tags", ".", "append", "(", "'N...	28.25	0.053533
def key_from_dict(**kwargs): """ Return a unique string representation of a dict as quickly as possible. Used to generated deduplication keys from a request. """ out = [] stack = [kwargs] while stack: obj = stack.pop() if isinstance(obj, dict): stack.extend(sorted...	[ "def", "key_from_dict", "(", "", "", "kwargs", ")", ":", "out", "=", "[", "]", "stack", "=", "[", "kwargs", "]", "while", "stack", ":", "obj", "=", "stack", ".", "pop", "(", ")", "if", "isinstance", "(", "obj", ",", "dict", ")", ":", "stack", ...	29.0625	0.002083
def mmGetMetricStabilityConfusion(self): """ For each iteration that doesn't follow a reset, looks at every other iteration for the same world that doesn't follow a reset, and computes the number of bits that show up in one or the other set of active cells for that iteration, but not both. This metr...	[ "def", "mmGetMetricStabilityConfusion", "(", "self", ")", ":", "self", ".", "_mmComputeSequenceRepresentationData", "(", ")", "numbers", "=", "self", ".", "_mmData", "[", "\"stabilityConfusion\"", "]", "return", "Metric", "(", "self", ",", "\"stability confusion\"", ...	43.615385	0.001727
def fetch(self): """ Retrieves the remote design document content and populates the locally cached DesignDocument dictionary. View content is stored either as View or QueryIndexView objects which are extensions of the ``dict`` type. All other design document data are stored dir...	[ "def", "fetch", "(", "self", ")", ":", "super", "(", "DesignDocument", ",", "self", ")", ".", "fetch", "(", ")", "if", "self", ".", "views", ":", "for", "view_name", ",", "view_def", "in", "iteritems_", "(", "self", ".", "get", "(", "'views'", ",", ...	43.032258	0.002199
def list_themes(directory=None): """Gets a list of the installed themes.""" repo = require_repo(directory) path = os.path.join(repo, themes_dir) return os.listdir(path) if os.path.isdir(path) else None	[ "def", "list_themes", "(", "directory", "=", "None", ")", ":", "repo", "=", "require_repo", "(", "directory", ")", "path", "=", "os", ".", "path", ".", "join", "(", "repo", ",", "themes_dir", ")", "return", "os", ".", "listdir", "(", "path", ")", "if...	42.6	0.004608
def push(self): """ create a github repo and push the local repo into it """ self.github_repo.create_and_push() self._repo = self.github_repo.repo return self._repo	[ "def", "push", "(", "self", ")", ":", "self", ".", "github_repo", ".", "create_and_push", "(", ")", "self", ".", "_repo", "=", "self", ".", "github_repo", ".", "repo", "return", "self", ".", "_repo" ]	33.166667	0.009804
def merge_section(self, section, filter_func=None): """ Add section.checks to self, if not skipped by self._add_check_callback. order, description, etc. are not updated. """ for check in section.checks: if filter_func and not filter_func(check): continue self.add_check(check)	[ "def", "merge_section", "(", "self", ",", "section", ",", "filter_func", "=", "None", ")", ":", "for", "check", "in", "section", ".", "checks", ":", "if", "filter_func", "and", "not", "filter_func", "(", "check", ")", ":", "continue", "self", ".", "add_c...	34.222222	0.009494
def sync_with_handlers(self, handlers=()): ''' Sync the stored log records to the provided log handlers. ''' if not handlers: return while self.__messages: record = self.__messages.pop(0) for handler in handlers: if handler.lev...	[ "def", "sync_with_handlers", "(", "self", ",", "handlers", "=", "(", ")", ")", ":", "if", "not", "handlers", ":", "return", "while", "self", ".", "__messages", ":", "record", "=", "self", ".", "__messages", ".", "pop", "(", "0", ")", "for", "handler", ...	35.466667	0.003663
def _compare_match(dict1, dict2): ''' Compare two dictionaries and return a boolean value if their values match. ''' for karg, warg in six.iteritems(dict1): if karg in dict2 and dict2[karg] != warg: return False return True	[ "def", "_compare_match", "(", "dict1", ",", "dict2", ")", ":", "for", "karg", ",", "warg", "in", "six", ".", "iteritems", "(", "dict1", ")", ":", "if", "karg", "in", "dict2", "and", "dict2", "[", "karg", "]", "!=", "warg", ":", "return", "False", "...	32	0.003802
def htmlReadDoc(cur, URL, encoding, options): """parse an XML in-memory document and build a tree. """ ret = libxml2mod.htmlReadDoc(cur, URL, encoding, options) if ret is None:raise treeError('htmlReadDoc() failed') return xmlDoc(_obj=ret)	[ "def", "htmlReadDoc", "(", "cur", ",", "URL", ",", "encoding", ",", "options", ")", ":", "ret", "=", "libxml2mod", ".", "htmlReadDoc", "(", "cur", ",", "URL", ",", "encoding", ",", "options", ")", "if", "ret", "is", "None", ":", "raise", "treeError", ...	50.2	0.011765
def register(*paths, methods=None, name=None, handler=None): """Mark Handler.method to aiohttp handler. It uses when registration of the handler with application is postponed. :: class AwesomeHandler(Handler): def get(self, request): return "I'm awesome!" ...	[ "def", "register", "(", "*", "paths", ",", "methods", "=", "None", ",", "name", "=", "None", ",", "handler", "=", "None", ")", ":", "def", "wrapper", "(", "method", ")", ":", "\"\"\"Store route params into method.\"\"\"", "method", "=", "to_coroutine", "(", ...	30.708333	0.001316
def _build_cache_key(self, uri): """ Build sha1 hex cache key to handle key length and whitespace to be compatible with Memcached """ key = uri.clone(ext=None, version=None) if six.PY3: key = key.encode('utf-8') return sha1(key).hexdigest()	[ "def", "_build_cache_key", "(", "self", ",", "uri", ")", ":", "key", "=", "uri", ".", "clone", "(", "ext", "=", "None", ",", "version", "=", "None", ")", "if", "six", ".", "PY3", ":", "key", "=", "key", ".", "encode", "(", "'utf-8'", ")", "return...	29.3	0.009934
def fitNorm_v2(self, specVals): """Fit the normalization given a set of spectral values that define a spectral shape. This version uses `scipy.optimize.fmin`. Parameters ---------- specVals : an array of (nebin values that define a spectral shape xlims : f...	[ "def", "fitNorm_v2", "(", "self", ",", "specVals", ")", ":", "from", "scipy", ".", "optimize", "import", "fmin", "def", "fToMin", "(", "x", ")", ":", "return", "self", ".", "__call__", "(", "specVals", "*", "x", ")", "result", "=", "fmin", "(", "fToM...	28.52381	0.006462
def _set_get_nameserver_detail(self, v, load=False): """ Setter method for get_nameserver_detail, mapped from YANG variable /brocade_nameserver_rpc/get_nameserver_detail (rpc) If this variable is read-only (config: false) in the source YANG file, then _set_get_nameserver_detail is considered as a privat...	[ "def", "_set_get_nameserver_detail", "(", "self", ",", "v", ",", "load", "=", "False", ")", ":", "if", "hasattr", "(", "v", ",", "\"_utype\"", ")", ":", "v", "=", "v", ".", "_utype", "(", "v", ")", "try", ":", "t", "=", "YANGDynClass", "(", "v", ...	78.16	0.005561
def execute(self): """Run selected module generator.""" if self._cli_arguments['cfn']: generate_sample_cfn_module(self.env_root) elif self._cli_arguments['sls']: generate_sample_sls_module(self.env_root) elif self._cli_arguments['sls-tsc']: generate_sa...	[ "def", "execute", "(", "self", ")", ":", "if", "self", ".", "_cli_arguments", "[", "'cfn'", "]", ":", "generate_sample_cfn_module", "(", "self", ".", "env_root", ")", "elif", "self", ".", "_cli_arguments", "[", "'sls'", "]", ":", "generate_sample_sls_module", ...	46.777778	0.002328
def validate(self, columns=None): """ Validates the current record object to make sure it is ok to commit to the database. If the optional override dictionary is passed in, then it will use the given values vs. the one stored with this record object which can be useful to check to see i...	[ "def", "validate", "(", "self", ",", "columns", "=", "None", ")", ":", "schema", "=", "self", ".", "schema", "(", ")", "if", "not", "columns", ":", "ignore_flags", "=", "orb", ".", "Column", ".", "Flags", ".", "Virtual", "\|", "orb", ".", "Column", ...	35.625	0.00427
def save_config(self, cmd="save config", confirm=True, confirm_response="y"): """Saves Config.""" self.enable() if confirm: output = self.send_command_timing(command_string=cmd) if confirm_response: output += self.send_command_timing(confirm_response) ...	[ "def", "save_config", "(", "self", ",", "cmd", "=", "\"save config\"", ",", "confirm", "=", "True", ",", "confirm_response", "=", "\"y\"", ")", ":", "self", ".", "enable", "(", ")", "if", "confirm", ":", "output", "=", "self", ".", "send_command_timing", ...	42.428571	0.003295
def get_tectonic_regionalisation(self, regionalisation, region_type=None): ''' Defines the tectonic region and updates the shear modulus, magnitude scaling relation and displacement to length ratio using the regional values, if not previously defined for the fault :param regiona...	[ "def", "get_tectonic_regionalisation", "(", "self", ",", "regionalisation", ",", "region_type", "=", "None", ")", ":", "if", "region_type", ":", "self", ".", "trt", "=", "region_type", "if", "not", "self", ".", "trt", "in", "regionalisation", ".", "key_list", ...	45.540541	0.001743
def resolve_dep_from_path(self, depname): """ If we can find the dep in the PATH, then we consider it to be a system dependency that we should not bundle in the package """ if is_system_dep(depname): return True for d in self._path: name = os.path.join(d, depname...	[ "def", "resolve_dep_from_path", "(", "self", ",", "depname", ")", ":", "if", "is_system_dep", "(", "depname", ")", ":", "return", "True", "for", "d", "in", "self", ".", "_path", ":", "name", "=", "os", ".", "path", ".", "join", "(", "d", ",", "depnam...	33.083333	0.004902
def detect_components(args, distro): """ Since the package split, now there are various different Ceph components to install like: * ceph * ceph-mon * ceph-mgr * ceph-osd * ceph-mds This helper function should parse the args that may contain specifics about these flags and retu...	[ "def", "detect_components", "(", "args", ",", "distro", ")", ":", "# the flag that prevents all logic here is the `--repo` flag which is used", "# when no packages should be installed, just the repo files, so check for", "# that here and return an empty list (which is equivalent to say 'no", "...	31.854839	0.000491
def _init_kws(self, **kws_usr): """Return a dict containing user-specified plotting options.""" kws_self = {} user_keys = set(kws_usr) for objname, expset in self.exp_keys.items(): usrkeys_curr = user_keys.intersection(expset) kws_self[objname] = get_kwargs(kws_us...	[ "def", "_init_kws", "(", "self", ",", "", "", "kws_usr", ")", ":", "kws_self", "=", "{", "}", "user_keys", "=", "set", "(", "kws_usr", ")", "for", "objname", ",", "expset", "in", "self", ".", "exp_keys", ".", "items", "(", ")", ":", "usrkeys_curr",...	46.7	0.004202
def combine(files: List[str], output_file: str, key: str = None, file_attrs: Dict[str, str] = None, batch_size: int = 1000, convert_attrs: bool = False) -> None: """ Combine two or more loom files and save as a new loom file Args: files (list of str): the list of input files (full paths) output_file (str): ...	[ "def", "combine", "(", "files", ":", "List", "[", "str", "]", ",", "output_file", ":", "str", ",", "key", ":", "str", "=", "None", ",", "file_attrs", ":", "Dict", "[", "str", ",", "str", "]", "=", "None", ",", "batch_size", ":", "int", "=", "1000...	44.045455	0.024735
def wait_for_interrupt(self, check_interval=1.0, max_time=None): """Run the event loop until we receive a ctrl-c interrupt or max_time passes. This method will wake up every 1 second by default to check for any interrupt signals or if the maximum runtime has expired. This can be set lo...	[ "def", "wait_for_interrupt", "(", "self", ",", "check_interval", "=", "1.0", ",", "max_time", "=", "None", ")", ":", "self", ".", "start", "(", ")", "wait", "=", "max", "(", "check_interval", ",", "0.01", ")", "accum", "=", "0", "try", ":", "while", ...	39.121212	0.003023
def smear(idx, factor): """ This function will take as input an array of indexes and return every unique index within the specified factor of the inputs. E.g.: smear([5,7,100],2) = [3,4,5,6,7,8,9,98,99,100,101,102] Parameters ----------- idx : numpy.array of ints The indexes to be ...	[ "def", "smear", "(", "idx", ",", "factor", ")", ":", "s", "=", "[", "idx", "]", "for", "i", "in", "range", "(", "factor", "+", "1", ")", ":", "a", "=", "i", "-", "factor", "/", "2", "s", "+=", "[", "idx", "+", "a", "]", "return", "numpy", ...	24	0.003082
def send_msg(name, recipient, subject, sender=None, profile=None, use_ssl='True', attachments=None): ''' Send a message via SMTP .. code-block:: yaml server-warning-message: smtp.send_msg: - name: '...	[ "def", "send_msg", "(", "name", ",", "recipient", ",", "subject", ",", "sender", "=", "None", ",", "profile", "=", "None", ",", "use_ssl", "=", "'True'", ",", "attachments", "=", "None", ")", ":", "ret", "=", "{", "'name'", ":", "name", ",", "'change...	27.676923	0.002147
def post_notification(self, ntype, sender, args, kwargs): """Post notification to all registered observers. The registered callback will be called as:: callback(ntype, sender, args, **kwargs) Parameters ---------- ntype : hashable The notification t...	[ "def", "post_notification", "(", "self", ",", "ntype", ",", "sender", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "if", "(", "ntype", "==", "None", "or", "sender", "==", "None", ")", ":", "raise", "NotificationError", "(", "\"Notification type a...	34	0.004515
def tree_statistics(tree): """ prints the types and counts of elements present in a SaltDocument tree, e.g.:: layers: 3 sDocument: 1 nodes: 252 labels: 2946 edges: 531 """ all_elements = tree.findall('//') tag_counter = defaultdict(int) for element i...	[ "def", "tree_statistics", "(", "tree", ")", ":", "all_elements", "=", "tree", ".", "findall", "(", "'//'", ")", "tag_counter", "=", "defaultdict", "(", "int", ")", "for", "element", "in", "all_elements", ":", "tag_counter", "[", "element", ".", "tag", "]",...	24.833333	0.002155
def _get_or_convert_magnitude(self, mag_letter): """ Takes input of the magnitude letter and ouputs the magnitude fetched from the catalogue or a converted value :return: """ allowed_mags = "UBVJIHKLMN" catalogue_mags = 'BVIJHK' if mag_letter not in allowed_mags or not l...	[ "def", "_get_or_convert_magnitude", "(", "self", ",", "mag_letter", ")", ":", "allowed_mags", "=", "\"UBVJIHKLMN\"", "catalogue_mags", "=", "'BVIJHK'", "if", "mag_letter", "not", "in", "allowed_mags", "or", "not", "len", "(", "mag_letter", ")", "==", "1", ":", ...	49.827586	0.005431
def value(dtype, arg): """Validates that the given argument is a Value with a particular datatype Parameters ---------- dtype : DataType subclass or DataType instance arg : python literal or an ibis expression If a python literal is given the validator tries to coerce it to an ibis lite...	[ "def", "value", "(", "dtype", ",", "arg", ")", ":", "if", "not", "isinstance", "(", "arg", ",", "ir", ".", "Expr", ")", ":", "# coerce python literal to ibis literal", "arg", "=", "ir", ".", "literal", "(", "arg", ")", "if", "not", "isinstance", "(", "...	33.902439	0.000699
def v_Us_B(self): """ returns the implications {v:Us} based on B This is L=∪ min L_i in [1]_ """ Bg = reduce(lambda x,y:x&y,(B(g,self.width-1) for g in self)) gw = self.width return v_Us_dict(Bg, gw)	[ "def", "v_Us_B", "(", "self", ")", ":", "Bg", "=", "reduce", "(", "lambda", "x", ",", "y", ":", "x", "&", "y", ",", "(", "B", "(", "g", ",", "self", ".", "width", "-", "1", ")", "for", "g", "in", "self", ")", ")", "gw", "=", "self", ".", ...	31	0.027451
def maf_iterator(fn, index_friendly=False, yield_class=MultipleSequenceAlignment, yield_kw_args={}, verbose=False): """ Iterate of MAF format file and yield <yield_class> objects for each block. MAF files are arranged in blocks. Each block is a multiple alignment. Within a blo...	[ "def", "maf_iterator", "(", "fn", ",", "index_friendly", "=", "False", ",", "yield_class", "=", "MultipleSequenceAlignment", ",", "yield_kw_args", "=", "{", "}", ",", "verbose", "=", "False", ")", ":", "try", ":", "fh", "=", "open", "(", "fn", ")", "exce...	40.077922	0.006958
def make_withitem(queue, stack): """ Make an ast.withitem node. """ context_expr = make_expr(stack) # This is a POP_TOP for just "with <expr>:". # This is a STORE_NAME(name) for "with <expr> as <name>:". as_instr = queue.popleft() if isinstance(as_instr, (instrs.STORE_FAST, ...	[ "def", "make_withitem", "(", "queue", ",", "stack", ")", ":", "context_expr", "=", "make_expr", "(", "stack", ")", "# This is a POP_TOP for just \"with <expr>:\".", "# This is a STORE_NAME(name) for \"with <expr> as <name>:\".", "as_instr", "=", "queue", ".", "popleft", "("...	37.454545	0.001183
def rfc3339(self): """Return an RFC 3339-compliant timestamp. Returns: (str): Timestamp string according to RFC 3339 spec. """ if self._nanosecond == 0: return to_rfc3339(self) nanos = str(self._nanosecond).rjust(9, '0').rstrip("0") return "{}.{}Z...	[ "def", "rfc3339", "(", "self", ")", ":", "if", "self", ".", "_nanosecond", "==", "0", ":", "return", "to_rfc3339", "(", "self", ")", "nanos", "=", "str", "(", "self", ".", "_nanosecond", ")", ".", "rjust", "(", "9", ",", "'0'", ")", ".", "rstrip", ...	36.3	0.005376
def from_dict(cls, tx): """Transforms a Python dictionary to a Transaction object. Args: tx_body (dict): The Transaction to be transformed. Returns: :class:`~bigchaindb.common.transaction.Transaction` """ inputs = [Input.from_dict(input_)...	[ "def", "from_dict", "(", "cls", ",", "tx", ")", ":", "inputs", "=", "[", "Input", ".", "from_dict", "(", "input_", ")", "for", "input_", "in", "tx", "[", "'inputs'", "]", "]", "outputs", "=", "[", "Output", ".", "from_dict", "(", "output", ")", "fo...	41.769231	0.003604
def delete_topics(self, topics, timeout_ms=None): """Delete topics from the cluster. :param topics: A list of topic name strings. :param timeout_ms: Milliseconds to wait for topics to be deleted before the broker returns. :return: Appropriate version of DeleteTopicsResponse ...	[ "def", "delete_topics", "(", "self", ",", "topics", ",", "timeout_ms", "=", "None", ")", ":", "version", "=", "self", ".", "_matching_api_version", "(", "DeleteTopicsRequest", ")", "timeout_ms", "=", "self", ".", "_validate_timeout", "(", "timeout_ms", ")", "i...	41.142857	0.003394
def _wait_for_tasks(tasks, service_instance): ''' Wait for tasks created via the VSAN API ''' log.trace('Waiting for vsan tasks: {0}', ', '.join([six.text_type(t) for t in tasks])) try: vsanapiutils.WaitForTasks(tasks, service_instance) except vim.fault.NoPermission as exc:...	[ "def", "_wait_for_tasks", "(", "tasks", ",", "service_instance", ")", ":", "log", ".", "trace", "(", "'Waiting for vsan tasks: {0}'", ",", "', '", ".", "join", "(", "[", "six", ".", "text_type", "(", "t", ")", "for", "t", "in", "tasks", "]", ")", ")", ...	39.1	0.001248
def associate_psds_to_single_ifo_segments(opt, fd_segments, gwstrain, flen, delta_f, flow, ifo, dyn_range_factor=1., precision=None): """ Associate PSDs to segments for a single ifo when using the multi-detector CLI """ ...	[ "def", "associate_psds_to_single_ifo_segments", "(", "opt", ",", "fd_segments", ",", "gwstrain", ",", "flen", ",", "delta_f", ",", "flow", ",", "ifo", ",", "dyn_range_factor", "=", "1.", ",", "precision", "=", "None", ")", ":", "single_det_opt", "=", "copy_opt...	52.181818	0.003425
def extract_feature(self, image, layer): """ Passes image to a deepnet and extracts from the specified layer :param image: opencv image :param layer: network layer name :return: extracted features """ img = image.astype(np.float32) # Substracting...	[ "def", "extract_feature", "(", "self", ",", "image", ",", "layer", ")", ":", "img", "=", "image", ".", "astype", "(", "np", ".", "float32", ")", "# Substracting Image mean value", "img", "-=", "np", ".", "array", "(", "(", "104.00698793", ",", "116.6687676...	30.692308	0.003645
def _index_document(self, identifier, force=False): """ Adds identifier document to the index. """ writer = self.index.writer() all_names = set([x['name'] for x in self.index.searcher().documents()]) if identifier['name'] not in all_names: writer.add_document(**identifier) ...	[ "def", "_index_document", "(", "self", ",", "identifier", ",", "force", "=", "False", ")", ":", "writer", "=", "self", ".", "index", ".", "writer", "(", ")", "all_names", "=", "set", "(", "[", "x", "[", "'name'", "]", "for", "x", "in", "self", ".",...	48.428571	0.005797
def get(ns, dburl=None): ''' Get a default dones object for ns. If no dones object exists for ns yet, a DbDones object will be created, cached, and returned. ''' if dburl is None: dburl = DONES_DB_URL cache_key = (ns, dburl) if ns not in DONES_CACHE: dones_ns = 'dones_{}'.f...	[ "def", "get", "(", "ns", ",", "dburl", "=", "None", ")", ":", "if", "dburl", "is", "None", ":", "dburl", "=", "DONES_DB_URL", "cache_key", "=", "(", "ns", ",", "dburl", ")", "if", "ns", "not", "in", "DONES_CACHE", ":", "dones_ns", "=", "'dones_{}'", ...	29.857143	0.00232
def in_file(string, search_file): """Looks in a file for a string.""" handle = open(search_file, 'r') for line in handle.readlines(): if string in line: return True return False	[ "def", "in_file", "(", "string", ",", "search_file", ")", ":", "handle", "=", "open", "(", "search_file", ",", "'r'", ")", "for", "line", "in", "handle", ".", "readlines", "(", ")", ":", "if", "string", "in", "line", ":", "return", "True", "return", ...	25.875	0.004673
def docs(recreate, gen_index, run_doctests): # type: (bool, bool, bool) -> None """ Build the documentation for the project. Args: recreate (bool): If set to True, the build and output directories will be cleared prior to generating the docs. gen_index (bool): ...	[ "def", "docs", "(", "recreate", ",", "gen_index", ",", "run_doctests", ")", ":", "# type: (bool, bool, bool) -> None", "build_dir", "=", "conf", ".", "get_path", "(", "'build_dir'", ",", "'.build'", ")", "docs_dir", "=", "conf", ".", "get_path", "(", "'docs.path...	36.862069	0.001367
def _destroy(cls, cdata): """Destroy some cdata""" # Leptonica API uses double-pointers for its destroy APIs to prevent # dangling pointers. This means we need to put our single pointer, # cdata, in a temporary CDATA. pp = ffi.new('{} '.format(cls.LEPTONICA_TYPENAME), cdata) ...	[ "def", "_destroy", "(", "cls", ",", "cdata", ")", ":", "# Leptonica API uses double-pointers for its destroy APIs to prevent", "# dangling pointers. This means we need to put our single pointer,", "# cdata, in a temporary CDATA.", "pp", "=", "ffi", ".", "new", "(", "'{} '", "...	49	0.005731
def sync_imports( self, quiet = False ): """Return a context manager to control imports onto all the engines in the underlying cluster. This method is used within a ``with`` statement. Any imports should be done with no experiments running, otherwise the method will block until the clus...	[ "def", "sync_imports", "(", "self", ",", "quiet", "=", "False", ")", ":", "self", ".", "open", "(", ")", "return", "self", ".", "_client", "[", ":", "]", ".", "sync_imports", "(", "quiet", "=", "quiet", ")" ]	50.857143	0.013793
def match(self, abstract_consonant: AbstractConsonant) -> bool: """ A real consonant matches an abstract consonant if and only if the required features of the abstract consonant are also features of the real consonant. :param abstract_consonant: AbstractConsonant :return: bool ...	[ "def", "match", "(", "self", ",", "abstract_consonant", ":", "AbstractConsonant", ")", "->", "bool", ":", "if", "isinstance", "(", "abstract_consonant", ",", "AbstractConsonant", ")", ":", "res", "=", "True", "if", "abstract_consonant", ".", "place", "is", "no...	46.5	0.002874
def space_search(args): """ Search for workspaces matching certain criteria """ r = fapi.list_workspaces() fapi._check_response_code(r, 200) # Parse the JSON for workspace + namespace; then filter by # search terms: each term is treated as a regular expression workspaces = r.json() extra_te...	[ "def", "space_search", "(", "args", ")", ":", "r", "=", "fapi", ".", "list_workspaces", "(", ")", "fapi", ".", "_check_response_code", "(", "r", ",", "200", ")", "# Parse the JSON for workspace + namespace; then filter by", "# search terms: each term is treated as a regul...	35.653846	0.00105
def sectionsPDF(self,walkTrace=tuple(),case=None,element=None,doc=None): """Prepares section for PDF output. """ import pylatex as pl if case == 'sectionmain': if self.settings['clearpage']: doc.append(pl.utils.NoEscape(r'\clearpage')) with doc.create(pl.Section(s...	[ "def", "sectionsPDF", "(", "self", ",", "walkTrace", "=", "tuple", "(", ")", ",", "case", "=", "None", ",", "element", "=", "None", ",", "doc", "=", "None", ")", ":", "import", "pylatex", "as", "pl", "if", "case", "==", "'sectionmain'", ":", "if", ...	50.333333	0.009171
def select_segment(self, segs, segs_tips, segs_undecided) -> Tuple[int, int]: """Out of a list of line segments, choose segment that has the most distant second data point. Assume the distance matrix Ddiff is sorted according to seg_idcs. Compute all the distances. Returns ...	[ "def", "select_segment", "(", "self", ",", "segs", ",", "segs_tips", ",", "segs_undecided", ")", "->", "Tuple", "[", "int", ",", "int", "]", ":", "scores_tips", "=", "np", ".", "zeros", "(", "(", "len", "(", "segs", ")", ",", "4", ")", ")", "allind...	52.052632	0.003721
def csv( self, filepath=None ): """Render the data in CSV format Key Arguments: - ``filepath`` -- path to the file to write the csv content to. Default None Return: - ``renderedData`` -- the data rendered in csv format Usage:...	[ "def", "csv", "(", "self", ",", "filepath", "=", "None", ")", ":", "self", ".", "log", ".", "debug", "(", "'starting the ``csv`` method'", ")", "renderedData", "=", "self", ".", "_list_of_dictionaries_to_csv", "(", "\"machine\"", ")", "if", "filepath", "and", ...	26.571429	0.002963
def list_database(db): """Print credential as a table""" credentials = db.credentials() if credentials: table = Table( db.config['headers'], table_format=db.config['table_format'], colors=db.config['colors'], hidden=db.config['hidden'], hid...	[ "def", "list_database", "(", "db", ")", ":", "credentials", "=", "db", ".", "credentials", "(", ")", "if", "credentials", ":", "table", "=", "Table", "(", "db", ".", "config", "[", "'headers'", "]", ",", "table_format", "=", "db", ".", "config", "[", ...	33.583333	0.002415

def retrieve_handle_record(self, handle, handlerecord_json=None): ''' Retrieve a handle record from the Handle server as a dict. If there is several entries of the same type, only the first one is returned. Values of complex types (such as HS_ADMIN) are transformed to strings. ...

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def conditional_loss_ratio(loss_ratios, poes, probability): """ Return the loss ratio corresponding to the given PoE (Probability of Exceendance). We can have four cases: 1. If `probability` is in `poes` it takes the bigger corresponding loss_ratios. 2. If it is in `(poe1, poe2)` wher...

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def find_by_b64id(self, _id, **kwargs): """ Pass me a base64-encoded ObjectId """ return self.find_one({"_id": ObjectId(base64.b64decode(_id))}, **kwargs)

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def images(cam): """Extract images from input stream to jpg files. Args: cam: Input stream of raw rosbag messages. Returns: File instances for images of input stream. """ # Set output stream title and pull first message yield marv.set_header(title=cam.topic) # Fetch and pr...

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def manipulate_multiproc_safe(traj): """ Target function that manipulates the trajectory. Stores the current name of the process into the trajectory and **overwrites** previous settings. :param traj: Trajectory container with multiprocessing safe storage service """ # Manipulate the...

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def parse(self, fo): """ Convert MDmodule output to motifs Parameters ---------- fo : file-like File object containing MDmodule output. Returns ------- motifs : list List of Motif instances. """ motifs = []...

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def diff(a, b, presorted=False, buffersize=None, tempdir=None, cache=True, strict=False): """ Find the difference between rows in two tables. Returns a pair of tables. E.g.:: >>> import petl as etl >>> a = [['foo', 'bar', 'baz'], ... ['A', 1, True], ... ['...

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def rm_alias(alias): ''' Remove an entry from the aliases file CLI Example: .. code-block:: bash salt '*' aliases.rm_alias alias ''' if not get_target(alias): return True lines = __parse_aliases() out = [] for (line_alias, line_target, line_comment) in lines: ...

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def reload(self): ''' Clear plugin manager state and reload plugins. This method will make use of :meth:`clear` and :meth:`load_plugin`, so all internal state will be cleared, and all plugins defined in :data:`self.app.config['plugin_modules']` will be loaded. ''' ...

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def sharded_filenames(filename_prefix, num_shards): """Sharded filenames given prefix and number of shards.""" shard_suffix = "%05d-of-%05d" return [ "%s-%s" % (filename_prefix, shard_suffix % (i, num_shards)) for i in range(num_shards) ]

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def _git_command(params, cwd): """ Executes a git command, returning the output :param params: A list of the parameters to pass to git :param cwd: The working directory to execute git in :return: A 2-element tuple of (stdout, stderr) """ proc = subprocess.Popen( ...

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def _normWidth(self, w, maxw): """ Helper for calculating percentages """ if type(w) == type(""): w = ((maxw / 100.0) * float(w[: - 1])) elif (w is None) or (w == "*"): w = maxw return min(w, maxw)

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def tange_grun(v, v0, gamma0, a, b): """ calculate Gruneisen parameter for the Tange equation :param v: unit-cell volume in A^3 :param v0: unit-cell volume in A^3 at 1 bar :param gamma0: Gruneisen parameter at 1 bar :param a: volume-independent adjustable parameters :param b: volume-indepen...

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def exchange_delete(self, exchange, if_unused=False, nowait=False, ticket=None): """ delete an exchange This method deletes an exchange. When an exchange is deleted all queue bindings on the exchange are cancelled. PARAMETERS: exchange: shortstr ...

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def datetime(self): """ Returns a datetime object of the month, day, year, and time the game was played. """ date_string = '%s %s' % (self._date, self._year) date_string = re.sub(r' \(\d+\)', '', date_string) return datetime.strptime(date_string, '%A, %b %d %Y')

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def _convert_timedelta_to_seconds(timedelta): """Returns the total seconds calculated from the supplied timedelta. (Function provided to enable running on Python 2.6 which lacks timedelta.total_seconds()). """ days_in_seconds = timedelta.days * 24 * 3600 return int((timedelta.microseconds + (ti...

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def from_cells(cls, cells): """ Creates a MOC from a numpy array representing the HEALPix cells. Parameters ---------- cells : `numpy.ndarray` Must be a numpy structured array (See https://docs.scipy.org/doc/numpy-1.15.0/user/basics.rec.html). The structu...

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def plot_calibration_curve(y_true, probas_list, clf_names=None, n_bins=10, title='Calibration plots (Reliability Curves)', ax=None, figsize=None, cmap='nipy_spectral', title_fontsize="large", text_fontsize="medium"): """Plots calibrati...

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def make_close_message(code=1000, message=b''): """Close the websocket, sending the specified code and message.""" return _make_frame(struct.pack('!H%ds' % len(message), code, message), opcode=OPCODE_CLOSE)

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def read_mda(attribute): """Read HDFEOS metadata and return a dict with all the key/value pairs.""" lines = attribute.split('\n') mda = {} current_dict = mda path = [] prev_line = None for line in lines: if not line: continue ...

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def get_manifest(self, repo_name, digest=None, version="v1"): ''' get_manifest should return an image manifest for a particular repo and tag. The image details are extracted when the client is generated. Parameters ========== repo_name: reference to the <username>/<reposi...

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def send_highspeed(self, data, progress_callback): """Send a script to a device at highspeed, reporting progress. This method takes a binary blob and downloads it to the device as fast as possible, calling the passed progress_callback periodically with updates on how far it has gotten. ...

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def _sanity_check_registered_locations_parent_locations(query_metadata_table): """Assert that all registered locations' parent locations are also registered.""" for location, location_info in query_metadata_table.registered_locations: if (location != query_metadata_table.root_location and ...

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def use_federated_gradebook_view(self): """Pass through to provider GradeSystemLookupSession.use_federated_gradebook_view""" self._gradebook_view = FEDERATED # self._get_provider_session('grade_system_lookup_session') # To make sure the session is tracked for session in self._get_provide...

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def rebalance_brokers(self): """Rebalance partition-count across brokers within each replication-group.""" for rg in six.itervalues(self.cluster_topology.rgs): rg.rebalance_brokers()

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def code(self, value): """ Set the code of the message. :type value: Codes :param value: the code :raise AttributeError: if value is not a valid code """ if value not in list(defines.Codes.LIST.keys()) and value is not None: raise AttributeError ...

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def postinit(self, exc=None, cause=None): """Do some setup after initialisation. :param exc: What is being raised. :type exc: NodeNG or None :param cause: The exception being used to raise this one. :type cause: NodeNG or None """ self.exc = exc self.cau...

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def clean(outputdir, drivers=None): """Remove driver executables from the specified outputdir. drivers can be a list of drivers to filter which executables to remove. Specify a version using an equal sign i.e.: 'chrome=2.2' """ if drivers: # Generate a list of tuples: [(driver_name, request...

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def build_arg_parser2(): """ Build an argument parser using optparse. Use it when python version is 2.5 or 2.6. """ usage_str = "Smatch calculator -- arguments" parser = optparse.OptionParser(usage=usage_str) parser.add_option("-f", "--files", nargs=2, dest="f", type="string", ...

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def tie_break(sorted_list, results, prop_key, ndecoys): """ When finding the best ensemble, using "find_best_ensemble," in the event of a tie, we break it by looking at enrichment factors at successively larger FPF values, beginning with the smallest FPF not trained on. :param sorted_list: :param re...

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def _reduce(self, op, name, axis=0, skipna=True, numeric_only=None, filter_type=None, **kwds): """ perform the reduction type operation if we can """ func = getattr(self, name, None) if func is None: raise TypeError("{klass} cannot perform the operation {op}".format( ...

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def execute(self, context): """Upload a file to Azure Blob Storage.""" hook = WasbHook(wasb_conn_id=self.wasb_conn_id) self.log.info( 'Uploading %s to wasb://%s ' 'as %s'.format(self.file_path, self.container_name, self.blob_name) ) hook.load_file(self.fil...

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def _split_line(self,data_list,line_num,text): """Builds list of text lines by splitting text lines at wrap point This function will determine if the input text line needs to be wrapped (split) into separate lines. If so, the first wrap point will be determined and the first line appen...

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def feed_forward(self, input_data, prediction=False): """Propagate forward through the layer **Parameters:** input_data : ``GPUArray`` Input data to compute activations for. prediction : bool, optional Whether to use prediction model. Only relevant when using ...

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def path(self, name): """ Look for files in subdirectory of MEDIA_ROOT using the tenant's domain_url value as the specifier. """ if name is None: name = '' try: location = safe_join(self.location, connection.tenant.domain_url) except Attrib...

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def set_up_logging(logger, level, should_be_quiet): """ Sets up logging for pepe. :param logger: The logger object to update. :param level: Logging level specified at command line. :param should_be_quiet: Boolean value for the -q option. :return: logging level ``...

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def register_lcformat(formatkey, fileglob, timecols, magcols, errcols, readerfunc_module, readerfunc, readerfunc_kwargs=None, normfunc_module=No...

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def answer(self, c, details): """Answer will provide all necessary feedback for the caller Args: c (int): HTTP Code details (dict): Response payload Returns: dict: Response payload Raises: ErrAtlasBadRequest ...

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def get_original_field_value(self, name): """ Returns original field value or None """ name = self.get_real_name(name) try: value = self.__original_data__[name] except KeyError: return None try: return value.export_original_da...

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def _val_pt_xml(self): """ The unicode XML snippet containing the ``<c:pt>`` elements containing the values for this series. """ xml = '' for idx, value in enumerate(self._series.values): if value is None: continue xml += ( ...

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def T(self, ID, sign): """ Returns the term of an object in a sign. """ lon = self.terms[sign][ID] ID = 'T_%s_%s' % (ID, sign) return self.G(ID, 0, lon)

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def volume(self, vol, clim=None, method='mip', threshold=None, cmap='grays'): """Show a 3D volume Parameters ---------- vol : ndarray Volume to render. clim : tuple of two floats | None The contrast limits. The values in the volume are mapp...

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def update(self, t_obj): """[update table] Arguments: t_obj {[objs of DeclarativeMeta]} -- [update the table] """ if isinstance(t_obj, Iterable): self._session.add_all(t_obj) else: self._session.add(t_obj)

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def isOnSilicon(self, ra_deg, dec_deg, padding_pix=DEFAULT_PADDING): """Returns True if the given location is observable with a science CCD. Parameters ---------- ra_deg : float Right Ascension (J2000) in decimal degrees. dec_deg : float Declination (J20...

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def betacf(a, b, x): """ This function evaluates the continued fraction form of the incomplete Beta function, betai. (Adapted from: Numerical Recipies in C.) Usage: lbetacf(a,b,x) """ ITMAX = 200 EPS = 3.0e-7 bm = az = am = 1.0 qab = a + b qap = a + 1.0 qam = a - 1.0 ...

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def click_event(event): """On click, bring the cell under the cursor to Life""" grid_x_coord = int(divmod(event.x, cell_size)[0]) grid_y_coord = int(divmod(event.y, cell_size)[0]) world[grid_x_coord][grid_y_coord].value = True color = world[x][y].color_alive.get_as_hex() canvas.itemconfig(canvas...

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def extract_params(params): """ Extracts the values of a set of parameters, recursing into nested dictionaries. """ values = [] if isinstance(params, dict): for key, value in params.items(): values.extend(extract_params(value)) elif isinstance(params, list): for value...

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def out_8(library, session, space, offset, data, extended=False): """Write in an 8-bit value from the specified memory space and offset. Corresponds to viOut8* functions of the VISA library. :param library: the visa library wrapped by ctypes. :param session: Unique logical identifier to a session. ...

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def _get_brokerclient(self, node_id): """ Get a broker client. :param int node_id: Broker node ID :raises KeyError: for an unknown node ID :returns: :class:`_KafkaBrokerClient` """ if self._closing: raise ClientError("Cannot get broker client for node...

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def dtypes(self): """ Return the dtypes in the DataFrame. This returns a Series with the data type of each column. The result's index is the original DataFrame's columns. Columns with mixed types are stored with the ``object`` dtype. See :ref:`the User Guide <basics.dtyp...

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def pos(self, element = None): ''' Tries to decide about the part of speech. ''' tags = [] if element: if re.search('[\w|\s]+ [m|f]\.', element, re.U): tags.append('NN') if '[VERB]' in element: tags.append('VB') if 'adj.' in element and re.search('([\w|\s]+, [\w|\s]+)', element, re.U): tags....

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def key_from_dict(**kwargs): """ Return a unique string representation of a dict as quickly as possible. Used to generated deduplication keys from a request. """ out = [] stack = [kwargs] while stack: obj = stack.pop() if isinstance(obj, dict): stack.extend(sorted...

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def mmGetMetricStabilityConfusion(self): """ For each iteration that doesn't follow a reset, looks at every other iteration for the same world that doesn't follow a reset, and computes the number of bits that show up in one or the other set of active cells for that iteration, but not both. This metr...

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def fetch(self): """ Retrieves the remote design document content and populates the locally cached DesignDocument dictionary. View content is stored either as View or QueryIndexView objects which are extensions of the ``dict`` type. All other design document data are stored dir...

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def list_themes(directory=None): """Gets a list of the installed themes.""" repo = require_repo(directory) path = os.path.join(repo, themes_dir) return os.listdir(path) if os.path.isdir(path) else None

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def push(self): """ create a github repo and push the local repo into it """ self.github_repo.create_and_push() self._repo = self.github_repo.repo return self._repo

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def merge_section(self, section, filter_func=None): """ Add section.checks to self, if not skipped by self._add_check_callback. order, description, etc. are not updated. """ for check in section.checks: if filter_func and not filter_func(check): continue self.add_check(check)

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def sync_with_handlers(self, handlers=()): ''' Sync the stored log records to the provided log handlers. ''' if not handlers: return while self.__messages: record = self.__messages.pop(0) for handler in handlers: if handler.lev...

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def _compare_match(dict1, dict2): ''' Compare two dictionaries and return a boolean value if their values match. ''' for karg, warg in six.iteritems(dict1): if karg in dict2 and dict2[karg] != warg: return False return True

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def htmlReadDoc(cur, URL, encoding, options): """parse an XML in-memory document and build a tree. """ ret = libxml2mod.htmlReadDoc(cur, URL, encoding, options) if ret is None:raise treeError('htmlReadDoc() failed') return xmlDoc(_obj=ret)

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def register(*paths, methods=None, name=None, handler=None): """Mark Handler.method to aiohttp handler. It uses when registration of the handler with application is postponed. :: class AwesomeHandler(Handler): def get(self, request): return "I'm awesome!" ...

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def _build_cache_key(self, uri): """ Build sha1 hex cache key to handle key length and whitespace to be compatible with Memcached """ key = uri.clone(ext=None, version=None) if six.PY3: key = key.encode('utf-8') return sha1(key).hexdigest()

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def fitNorm_v2(self, specVals): """Fit the normalization given a set of spectral values that define a spectral shape. This version uses `scipy.optimize.fmin`. Parameters ---------- specVals : an array of (nebin values that define a spectral shape xlims : f...

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def _set_get_nameserver_detail(self, v, load=False): """ Setter method for get_nameserver_detail, mapped from YANG variable /brocade_nameserver_rpc/get_nameserver_detail (rpc) If this variable is read-only (config: false) in the source YANG file, then _set_get_nameserver_detail is considered as a privat...

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def execute(self): """Run selected module generator.""" if self._cli_arguments['cfn']: generate_sample_cfn_module(self.env_root) elif self._cli_arguments['sls']: generate_sample_sls_module(self.env_root) elif self._cli_arguments['sls-tsc']: generate_sa...

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def validate(self, columns=None): """ Validates the current record object to make sure it is ok to commit to the database. If the optional override dictionary is passed in, then it will use the given values vs. the one stored with this record object which can be useful to check to see i...

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def save_config(self, cmd="save config", confirm=True, confirm_response="y"): """Saves Config.""" self.enable() if confirm: output = self.send_command_timing(command_string=cmd) if confirm_response: output += self.send_command_timing(confirm_response) ...

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def get_tectonic_regionalisation(self, regionalisation, region_type=None): ''' Defines the tectonic region and updates the shear modulus, magnitude scaling relation and displacement to length ratio using the regional values, if not previously defined for the fault :param regiona...

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def resolve_dep_from_path(self, depname): """ If we can find the dep in the PATH, then we consider it to be a system dependency that we should not bundle in the package """ if is_system_dep(depname): return True for d in self._path: name = os.path.join(d, depname...

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def detect_components(args, distro): """ Since the package split, now there are various different Ceph components to install like: * ceph * ceph-mon * ceph-mgr * ceph-osd * ceph-mds This helper function should parse the args that may contain specifics about these flags and retu...

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def _init_kws(self, **kws_usr): """Return a dict containing user-specified plotting options.""" kws_self = {} user_keys = set(kws_usr) for objname, expset in self.exp_keys.items(): usrkeys_curr = user_keys.intersection(expset) kws_self[objname] = get_kwargs(kws_us...

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def combine(files: List[str], output_file: str, key: str = None, file_attrs: Dict[str, str] = None, batch_size: int = 1000, convert_attrs: bool = False) -> None: """ Combine two or more loom files and save as a new loom file Args: files (list of str): the list of input files (full paths) output_file (str): ...

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def wait_for_interrupt(self, check_interval=1.0, max_time=None): """Run the event loop until we receive a ctrl-c interrupt or max_time passes. This method will wake up every 1 second by default to check for any interrupt signals or if the maximum runtime has expired. This can be set lo...

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def smear(idx, factor): """ This function will take as input an array of indexes and return every unique index within the specified factor of the inputs. E.g.: smear([5,7,100],2) = [3,4,5,6,7,8,9,98,99,100,101,102] Parameters ----------- idx : numpy.array of ints The indexes to be ...

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def send_msg(name, recipient, subject, sender=None, profile=None, use_ssl='True', attachments=None): ''' Send a message via SMTP .. code-block:: yaml server-warning-message: smtp.send_msg: - name: '...

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def post_notification(self, ntype, sender, *args, **kwargs): """Post notification to all registered observers. The registered callback will be called as:: callback(ntype, sender, *args, **kwargs) Parameters ---------- ntype : hashable The notification t...

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def tree_statistics(tree): """ prints the types and counts of elements present in a SaltDocument tree, e.g.:: layers: 3 sDocument: 1 nodes: 252 labels: 2946 edges: 531 """ all_elements = tree.findall('//') tag_counter = defaultdict(int) for element i...

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def _get_or_convert_magnitude(self, mag_letter): """ Takes input of the magnitude letter and ouputs the magnitude fetched from the catalogue or a converted value :return: """ allowed_mags = "UBVJIHKLMN" catalogue_mags = 'BVIJHK' if mag_letter not in allowed_mags or not l...

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def value(dtype, arg): """Validates that the given argument is a Value with a particular datatype Parameters ---------- dtype : DataType subclass or DataType instance arg : python literal or an ibis expression If a python literal is given the validator tries to coerce it to an ibis lite...

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def v_Us_B(self): """ returns the implications {v:Us} based on B This is L=∪ min L_i in [1]_ """ Bg = reduce(lambda x,y:x&y,(B(g,self.width-1) for g in self)) gw = self.width return v_Us_dict(Bg, gw)

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def maf_iterator(fn, index_friendly=False, yield_class=MultipleSequenceAlignment, yield_kw_args={}, verbose=False): """ Iterate of MAF format file and yield <yield_class> objects for each block. MAF files are arranged in blocks. Each block is a multiple alignment. Within a blo...

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def make_withitem(queue, stack): """ Make an ast.withitem node. """ context_expr = make_expr(stack) # This is a POP_TOP for just "with <expr>:". # This is a STORE_NAME(name) for "with <expr> as <name>:". as_instr = queue.popleft() if isinstance(as_instr, (instrs.STORE_FAST, ...

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def rfc3339(self): """Return an RFC 3339-compliant timestamp. Returns: (str): Timestamp string according to RFC 3339 spec. """ if self._nanosecond == 0: return to_rfc3339(self) nanos = str(self._nanosecond).rjust(9, '0').rstrip("0") return "{}.{}Z...

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def from_dict(cls, tx): """Transforms a Python dictionary to a Transaction object. Args: tx_body (dict): The Transaction to be transformed. Returns: :class:`~bigchaindb.common.transaction.Transaction` """ inputs = [Input.from_dict(input_)...

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def delete_topics(self, topics, timeout_ms=None): """Delete topics from the cluster. :param topics: A list of topic name strings. :param timeout_ms: Milliseconds to wait for topics to be deleted before the broker returns. :return: Appropriate version of DeleteTopicsResponse ...

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def _wait_for_tasks(tasks, service_instance): ''' Wait for tasks created via the VSAN API ''' log.trace('Waiting for vsan tasks: {0}', ', '.join([six.text_type(t) for t in tasks])) try: vsanapiutils.WaitForTasks(tasks, service_instance) except vim.fault.NoPermission as exc:...

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def associate_psds_to_single_ifo_segments(opt, fd_segments, gwstrain, flen, delta_f, flow, ifo, dyn_range_factor=1., precision=None): """ Associate PSDs to segments for a single ifo when using the multi-detector CLI """ ...

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def extract_feature(self, image, layer): """ Passes image to a deepnet and extracts from the specified layer :param image: opencv image :param layer: network layer name :return: extracted features """ img = image.astype(np.float32) # Substracting...

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def _index_document(self, identifier, force=False): """ Adds identifier document to the index. """ writer = self.index.writer() all_names = set([x['name'] for x in self.index.searcher().documents()]) if identifier['name'] not in all_names: writer.add_document(**identifier) ...

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def get(ns, dburl=None): ''' Get a default dones object for ns. If no dones object exists for ns yet, a DbDones object will be created, cached, and returned. ''' if dburl is None: dburl = DONES_DB_URL cache_key = (ns, dburl) if ns not in DONES_CACHE: dones_ns = 'dones_{}'.f...

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def in_file(string, search_file): """Looks in a file for a string.""" handle = open(search_file, 'r') for line in handle.readlines(): if string in line: return True return False

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def docs(recreate, gen_index, run_doctests): # type: (bool, bool, bool) -> None """ Build the documentation for the project. Args: recreate (bool): If set to **True**, the build and output directories will be cleared prior to generating the docs. gen_index (bool): ...

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def _destroy(cls, cdata): """Destroy some cdata""" # Leptonica API uses double-pointers for its destroy APIs to prevent # dangling pointers. This means we need to put our single pointer, # cdata, in a temporary CDATA**. pp = ffi.new('{} **'.format(cls.LEPTONICA_TYPENAME), cdata) ...

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49

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def sync_imports( self, quiet = False ): """Return a context manager to control imports onto all the engines in the underlying cluster. This method is used within a ``with`` statement. Any imports should be done with no experiments running, otherwise the method will block until the clus...

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def match(self, abstract_consonant: AbstractConsonant) -> bool: """ A real consonant matches an abstract consonant if and only if the required features of the abstract consonant are also features of the real consonant. :param abstract_consonant: AbstractConsonant :return: bool ...

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def space_search(args): """ Search for workspaces matching certain criteria """ r = fapi.list_workspaces() fapi._check_response_code(r, 200) # Parse the JSON for workspace + namespace; then filter by # search terms: each term is treated as a regular expression workspaces = r.json() extra_te...

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def sectionsPDF(self,walkTrace=tuple(),case=None,element=None,doc=None): """Prepares section for PDF output. """ import pylatex as pl if case == 'sectionmain': if self.settings['clearpage']: doc.append(pl.utils.NoEscape(r'\clearpage')) with doc.create(pl.Section(s...

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def select_segment(self, segs, segs_tips, segs_undecided) -> Tuple[int, int]: """Out of a list of line segments, choose segment that has the most distant second data point. Assume the distance matrix Ddiff is sorted according to seg_idcs. Compute all the distances. Returns ...

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def csv( self, filepath=None ): """*Render the data in CSV format* **Key Arguments:** - ``filepath`` -- path to the file to write the csv content to. Default *None* **Return:** - ``renderedData`` -- the data rendered in csv format **Usage:**...

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def list_database(db): """Print credential as a table""" credentials = db.credentials() if credentials: table = Table( db.config['headers'], table_format=db.config['table_format'], colors=db.config['colors'], hidden=db.config['hidden'], hid...

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