kejian/codesearchnet-python-pep8-full · Datasets at Hugging Face

text stringlengths 75 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 0.18
def get_fastq_dir(fc_dir): """Retrieve the fastq directory within Solexa flowcell output. """ full_goat_bc = glob.glob(os.path.join(fc_dir, "Data", "Firecrest", "Bustard")) bustard_bc = glob.glob(os.path.join(fc_dir, "Data", "Intensities", "Bustard*")) machine_bc = os.path.join(fc_dir, "Data", "...	[ "def", "get_fastq_dir", "(", "fc_dir", ")", ":", "full_goat_bc", "=", "glob", ".", "glob", "(", "os", ".", "path", ".", "join", "(", "fc_dir", ",", "\"Data\"", ",", "\"Firecrest\"", ",", "\"Bustard*\"", ")", ")", "bustard_bc", "=", "glob", ".", "glob",...	45	0.004082
def _NewMatchSection(self, val): """Create a new configuration section for each match clause. Each match clause is added to the main config, and the criterion that will trigger the match is recorded, as is the configuration. Args: val: The value following the 'match' keyword. """ section...	[ "def", "_NewMatchSection", "(", "self", ",", "val", ")", ":", "section", "=", "{", "\"criterion\"", ":", "val", ",", "\"config\"", ":", "{", "}", "}", "self", ".", "matches", ".", "append", "(", "section", ")", "# Now add configuration items to config section ...	39.266667	0.001658
def _inline_activate_venv(): """Built-in venv doesn't have activate_this.py, but doesn't need it anyway. As long as we find the correct executable, built-in venv sets up the environment automatically. See: https://bugs.python.org/issue21496#msg218455 """ components = [] for name in ("bin",...	[ "def", "_inline_activate_venv", "(", ")", ":", "components", "=", "[", "]", "for", "name", "in", "(", "\"bin\"", ",", "\"Scripts\"", ")", ":", "bindir", "=", "os", ".", "path", ".", "join", "(", "project", ".", "virtualenv_location", ",", "name", ")", ...	36.4375	0.001672
def setupQuery(self, query, op, editor): """ Returns the value from the editor. :param op \| <str> editor \| <QWidget> \|\| None :return <bool> \| success """ try: registry = self._operatorMap[natives...	[ "def", "setupQuery", "(", "self", ",", "query", ",", "op", ",", "editor", ")", ":", "try", ":", "registry", "=", "self", ".", "_operatorMap", "[", "nativestring", "(", "op", ")", "]", "except", "KeyError", ":", "return", "False", "op", "=", "registry",...	26.038462	0.011396
def update_subnet(subnet, name, profile=None): ''' Updates a subnet CLI Example: .. code-block:: bash salt '*' neutron.update_subnet subnet-name new-subnet-name :param subnet: ID or name of subnet to update :param name: Name of this subnet :param profile: Profile to build on (Opt...	[ "def", "update_subnet", "(", "subnet", ",", "name", ",", "profile", "=", "None", ")", ":", "conn", "=", "_auth", "(", "profile", ")", "return", "conn", ".", "update_subnet", "(", "subnet", ",", "name", ")" ]	25.705882	0.002208
def create_transcripts_xml(video_id, video_el, resource_fs, static_dir): """ Creates xml for transcripts. For each transcript element, an associated transcript file is also created in course OLX. Arguments: video_id (str): Video id of the video. video_el (Element): lxml Element object ...	[ "def", "create_transcripts_xml", "(", "video_id", ",", "video_el", ",", "resource_fs", ",", "static_dir", ")", ":", "video_transcripts", "=", "VideoTranscript", ".", "objects", ".", "filter", "(", "video__edx_video_id", "=", "video_id", ")", ".", "order_by", "(", ...	40.897959	0.002924
def doGetAttrib(self, attribId): """get an attribute attribId: Identifier for the attribute to get return: response are the attribute byte array """ CardConnection.doGetAttrib(self, attribId) hresult, response = SCardGetAttrib(self.hcard, attribId) if hresult ...	[ "def", "doGetAttrib", "(", "self", ",", "attribId", ")", ":", "CardConnection", ".", "doGetAttrib", "(", "self", ",", "attribId", ")", "hresult", ",", "response", "=", "SCardGetAttrib", "(", "self", ".", "hcard", ",", "attribId", ")", "if", "hresult", "!="...	34.384615	0.004357
def isIdentity(M, tol=1e-06): """Check if vtkMatrix4x4 is Identity.""" for i in [0, 1, 2, 3]: for j in [0, 1, 2, 3]: e = M.GetElement(i, j) if i == j: if np.abs(e - 1) > tol: return False elif np.abs(e) > tol: return...	[ "def", "isIdentity", "(", "M", ",", "tol", "=", "1e-06", ")", ":", "for", "i", "in", "[", "0", ",", "1", ",", "2", ",", "3", "]", ":", "for", "j", "in", "[", "0", ",", "1", ",", "2", ",", "3", "]", ":", "e", "=", "M", ".", "GetElement",...	30.181818	0.002924
def _init_journal(self, permissive=True): """Add the initialization lines to the journal. By default adds JrnObj variable and timestamp to the journal contents. Args: permissive (bool): if True most errors in journal will not cause Revit to stop journ...	[ "def", "_init_journal", "(", "self", ",", "permissive", "=", "True", ")", ":", "nowstamp", "=", "datetime", ".", "now", "(", ")", ".", "strftime", "(", "\"%d-%b-%Y %H:%M:%S.%f\"", ")", "[", ":", "-", "3", "]", "self", ".", "_add_entry", "(", "templates",...	41.6	0.003135
def _configure_buffer_sizes(): """Set up module globals controlling buffer sizes""" global PIPE_BUF_BYTES global OS_PIPE_SZ PIPE_BUF_BYTES = 65536 OS_PIPE_SZ = None # Teach the 'fcntl' module about 'F_SETPIPE_SZ', which is a Linux-ism, # but a good one that can drastically reduce the numbe...	[ "def", "_configure_buffer_sizes", "(", ")", ":", "global", "PIPE_BUF_BYTES", "global", "OS_PIPE_SZ", "PIPE_BUF_BYTES", "=", "65536", "OS_PIPE_SZ", "=", "None", "# Teach the 'fcntl' module about 'F_SETPIPE_SZ', which is a Linux-ism,", "# but a good one that can drastically reduce the ...	36.296296	0.000994
def sdiv(a, b): """Safe division: if a == b == 0, sdiv(a, b) == 1""" if len(a) != len(b): raise ValueError('Argument a and b does not have the same length') idx = 0 ret = matrix(0, (len(a), 1), 'd') for m, n in zip(a, b): try: ret[idx] = m / n except ZeroDivisionE...	[ "def", "sdiv", "(", "a", ",", "b", ")", ":", "if", "len", "(", "a", ")", "!=", "len", "(", "b", ")", ":", "raise", "ValueError", "(", "'Argument a and b does not have the same length'", ")", "idx", "=", "0", "ret", "=", "matrix", "(", "0", ",", "(", ...	27.857143	0.002481
def _is_potential_multi_index(columns): """ Check whether or not the `columns` parameter could be converted into a MultiIndex. Parameters ---------- columns : array-like Object which may or may not be convertible into a MultiIndex Returns ------- boolean : Whether or not co...	[ "def", "_is_potential_multi_index", "(", "columns", ")", ":", "return", "(", "len", "(", "columns", ")", "and", "not", "isinstance", "(", "columns", ",", "MultiIndex", ")", "and", "all", "(", "isinstance", "(", "c", ",", "tuple", ")", "for", "c", "in", ...	29.3125	0.002066
def feed(self, data): """ Add new incoming data to buffer and try to process """ self.buffer += data while len(self.buffer) >= 6: self.next_packet()	[ "def", "feed", "(", "self", ",", "data", ")", ":", "self", ".", "buffer", "+=", "data", "while", "len", "(", "self", ".", "buffer", ")", ">=", "6", ":", "self", ".", "next_packet", "(", ")" ]	27.714286	0.01
def get_activity_ids_by_objective_bank(self, objective_bank_id): """Gets the list of ``Activity`` ``Ids`` associated with an ``ObjectiveBank``. arg: objective_bank_id (osid.id.Id): ``Id`` of the ``ObjectiveBank`` return: (osid.id.IdList) - list of related activity ``Ids`` ...	[ "def", "get_activity_ids_by_objective_bank", "(", "self", ",", "objective_bank_id", ")", ":", "# Implemented from template for", "# osid.resource.ResourceBinSession.get_resource_ids_by_bin", "id_list", "=", "[", "]", "for", "activity", "in", "self", ".", "get_activities_by_obje...	48	0.004301
def removeLastRow(self): """Removes the last track""" lastrow = self._segments.pop(len(self._segments)-1) if len(lastrow) > 0: raise Exception("Attempt to remove non-empty stimulus track")	[ "def", "removeLastRow", "(", "self", ")", ":", "lastrow", "=", "self", ".", "_segments", ".", "pop", "(", "len", "(", "self", ".", "_segments", ")", "-", "1", ")", "if", "len", "(", "lastrow", ")", ">", "0", ":", "raise", "Exception", "(", "\"Attem...	44	0.008929
def runOnExecutor(self, *commands, oper=ACCEPT, defer_shell_expansion=False): """ This runs in the executor of the current scope. You cannot magically back out since there are no gurantees that ssh keys will be in place (they shouldn't be). """ return self.makeOutput(EXE, command...	[ "def", "runOnExecutor", "(", "self", ",", "*", "commands", ",", "oper", "=", "ACCEPT", ",", "defer_shell_expansion", "=", "False", ")", ":", "return", "self", ".", "makeOutput", "(", "EXE", ",", "commands", ",", "oper", "=", "oper", ",", "defer_shell_expan...	74.8	0.007937
def saveAsPickleFile(self, path, batchSize=10): """ Save this RDD as a SequenceFile of serialized objects. The serializer used is L{pyspark.serializers.PickleSerializer}, default batch size is 10. >>> tmpFile = NamedTemporaryFile(delete=True) >>> tmpFile.close() ...	[ "def", "saveAsPickleFile", "(", "self", ",", "path", ",", "batchSize", "=", "10", ")", ":", "if", "batchSize", "==", "0", ":", "ser", "=", "AutoBatchedSerializer", "(", "PickleSerializer", "(", ")", ")", "else", ":", "ser", "=", "BatchedSerializer", "(", ...	42.647059	0.004049
def main(args=None): """The entry point of the application.""" if args is None: args = sys.argv[1:] # Parse command-line args = docopt(__doc__, argv=args) # Parse arguments path, address = resolve(args['<path>'], args['<address>']) host, port = split_address(address) # Validat...	[ "def", "main", "(", "args", "=", "None", ")", ":", "if", "args", "is", "None", ":", "args", "=", "sys", ".", "argv", "[", "1", ":", "]", "# Parse command-line", "args", "=", "docopt", "(", "__doc__", ",", "argv", "=", "args", ")", "# Parse arguments"...	23.925926	0.001488
def register_all_shape_checker(shape_checker_function, arg_types, exclude=(), ignore_existing=False): """Register a gradient adder for all combinations of given types. This is a convenience shorthand for calling register_a...	[ "def", "register_all_shape_checker", "(", "shape_checker_function", ",", "arg_types", ",", "exclude", "=", "(", ")", ",", "ignore_existing", "=", "False", ")", ":", "for", "t1", "in", "arg_types", ":", "for", "t2", "in", "arg_types", ":", "if", "(", "t1", ...	40.32	0.006783
def generate_kmers(seq, k=4): """Return a generator of all the unique substrings (k-mer or q-gram strings) within a sequence/string Not effiicent for large k and long strings. Doesn't form substrings that are shorter than k, only exactly k-mers Used for algorithms like UniqTag for genome unique identi...	[ "def", "generate_kmers", "(", "seq", ",", "k", "=", "4", ")", ":", "if", "isinstance", "(", "seq", ",", "basestring", ")", ":", "for", "i", "in", "range", "(", "len", "(", "seq", ")", "-", "k", "+", "1", ")", ":", "yield", "seq", "[", "i", ":...	41.714286	0.005021
def make_exception_message(exc): """ An exception is passed in and this function returns the proper string depending on the result so it is readable enough. """ if str(exc): return '%s: %s\n' % (exc.__class__.__name__, exc) else: return '%s\n' % (exc.__class__.__name__)	[ "def", "make_exception_message", "(", "exc", ")", ":", "if", "str", "(", "exc", ")", ":", "return", "'%s: %s\\n'", "%", "(", "exc", ".", "__class__", ".", "__name__", ",", "exc", ")", "else", ":", "return", "'%s\\n'", "%", "(", "exc", ".", "__class__",...	30.5	0.003185
def _observers_for_notification(self, ntype, sender): """Find all registered observers that should recieve notification""" keys = ( (ntype,sender), (ntype, None), (None, sender), (None,None) ) obs = set(...	[ "def", "_observers_for_notification", "(", "self", ",", "ntype", ",", "sender", ")", ":", "keys", "=", "(", "(", "ntype", ",", "sender", ")", ",", "(", "ntype", ",", "None", ")", ",", "(", "None", ",", "sender", ")", ",", "(", "None", ",", "None", ...	26.866667	0.009592
def clip_datetime(dt, tz=DEFAULT_TZ, is_dst=None): """Limit a datetime to a valid range for datetime, datetime64, and Timestamp objects >>> from datetime import timedelta >>> clip_datetime(MAX_DATETIME + timedelta(100)) == pd.Timestamp(MAX_DATETIME, tz='utc') == MAX_TIMESTAMP True >>> MAX_TIMESTAMP ...	[ "def", "clip_datetime", "(", "dt", ",", "tz", "=", "DEFAULT_TZ", ",", "is_dst", "=", "None", ")", ":", "if", "isinstance", "(", "dt", ",", "datetime", ".", "datetime", ")", ":", "# TODO: this gives up a day of datetime range due to assumptions about timezone", "# ...	40.956522	0.005187
def default(): """Default configuration for PPO.""" # General algorithm = algorithms.PPO num_agents = 30 eval_episodes = 30 use_gpu = False # Environment normalize_ranges = True # Network network = networks.feed_forward_gaussian weight_summaries = dict( all=r'.', policy=r'./policy/.*', val...	[ "def", "default", "(", ")", ":", "# General", "algorithm", "=", "algorithms", ".", "PPO", "num_agents", "=", "30", "eval_episodes", "=", "30", "use_gpu", "=", "False", "# Environment", "normalize_ranges", "=", "True", "# Network", "network", "=", "networks", "...	22.827586	0.04058
def inject_scheme(self, b16_scheme): """Inject string $b16_scheme into self.content.""" # correctly formatted start and end of block should have already been # ascertained by _get_temp content_lines = self.content.splitlines() b16_scheme_lines = b16_scheme.splitlines() st...	[ "def", "inject_scheme", "(", "self", ",", "b16_scheme", ")", ":", "# correctly formatted start and end of block should have already been", "# ascertained by _get_temp", "content_lines", "=", "self", ".", "content", ".", "splitlines", "(", ")", "b16_scheme_lines", "=", "b16_...	40.5	0.002193
def as_representer(resource, content_type): """ Adapts the given resource and content type to a representer. :param resource: resource to adapt. :param str content_type: content (MIME) type to obtain a representer for. """ reg = get_current_registry() rpr_reg = reg.queryUtility(IRepresenter...	[ "def", "as_representer", "(", "resource", ",", "content_type", ")", ":", "reg", "=", "get_current_registry", "(", ")", "rpr_reg", "=", "reg", ".", "queryUtility", "(", "IRepresenterRegistry", ")", "return", "rpr_reg", ".", "create", "(", "type", "(", "resource...	37.6	0.002597
def decimate_mean(self, a, maxpoints, *kwargs): """Return data a* mean-decimated on maxpoints. Histograms each column into maxpoints bins and calculates the weighted average in each bin as the decimated data, using :func:`numkit.timeseries.mean_histogrammed_function`. The coarse g...	[ "def", "decimate_mean", "(", "self", ",", "a", ",", "maxpoints", ",", "", "", "kwargs", ")", ":", "return", "self", ".", "_decimate", "(", "numkit", ".", "timeseries", ".", "mean_histogrammed_function", ",", "a", ",", "maxpoints", ",", "", "", "kwarg...	40.421053	0.005089
def _btc_script_serialize_unit(unit): """ Encode one item of a BTC script Return the encoded item (as a string) Based on code from pybitcointools (https://github.com/vbuterin/pybitcointools) by Vitalik Buterin """ if isinstance(unit, int): # cannot be less than -1, since btc_sc...	[ "def", "_btc_script_serialize_unit", "(", "unit", ")", ":", "if", "isinstance", "(", "unit", ",", "int", ")", ":", "# cannot be less than -1, since btc_script_deserialize() never returns such numbers", "if", "unit", "<", "-", "1", ":", "raise", "ValueError", "(", "'In...	37.727273	0.00411
def _fill_naked_singles(self): """Look for naked singles, i.e. cells with ony one possible value. :return: If any Naked Single has been found. :rtype: bool """ simple_found = False for i in utils.range_(self.side): for j in utils.range_(self.side): ...	[ "def", "_fill_naked_singles", "(", "self", ")", ":", "simple_found", "=", "False", "for", "i", "in", "utils", ".", "range_", "(", "self", ".", "side", ")", ":", "for", "j", "in", "utils", ".", "range_", "(", "self", ".", "side", ")", ":", "if", "se...	38	0.00489
def detect(self): """Detect all currently known devices. Returns the root device.""" root = self._actions.detect() prune_empty_node(root, set()) return root	[ "def", "detect", "(", "self", ")", ":", "root", "=", "self", ".", "_actions", ".", "detect", "(", ")", "prune_empty_node", "(", "root", ",", "set", "(", ")", ")", "return", "root" ]	36.8	0.010638
def export_diagram_plane_elements(root, diagram_attributes, plane_attributes): """ Creates 'diagram' and 'plane' elements for exported BPMN XML file. Returns a tuple (diagram, plane). :param root: object of Element class, representing a BPMN XML root element ('definitions'), :pa...	[ "def", "export_diagram_plane_elements", "(", "root", ",", "diagram_attributes", ",", "plane_attributes", ")", ":", "diagram", "=", "eTree", ".", "SubElement", "(", "root", ",", "BpmnDiagramGraphExport", ".", "bpmndi_namespace", "+", "\"BPMNDiagram\"", ")", "diagram", ...	59.222222	0.007387
def random_draw(self, size=None): """Draw random samples of the hyperparameters. Parameters ---------- size : None, int or array-like, optional The number/shape of samples to draw. If None, only one sample is returned. Default is None. """ ...	[ "def", "random_draw", "(", "self", ",", "size", "=", "None", ")", ":", "return", "scipy", ".", "asarray", "(", "[", "scipy", ".", "stats", ".", "gamma", ".", "rvs", "(", "a", ",", "loc", "=", "0", ",", "scale", "=", "1.0", "/", "b", ",", "size"...	42.5	0.009217
def orientation(self): """ The angle in radians between the ``x`` axis and the major axis of the 2D Gaussian function that has the same second-order moments as the source. The angle increases in the counter-clockwise direction. """ a, b, b, c = self.covariance.f...	[ "def", "orientation", "(", "self", ")", ":", "a", ",", "b", ",", "b", ",", "c", "=", "self", ".", "covariance", ".", "flat", "if", "a", "<", "0", "or", "c", "<", "0", ":", "# negative variance", "return", "np", ".", "nan", "*", "u", ".", "rad",...	38.75	0.004202
def _ewp_iccarm_set(self, ewp_dic, project_dic): """ C/C++ options (ICCARM) """ index_iccarm = self._get_option(ewp_dic, 'ICCARM') index_option = self._get_option(ewp_dic[index_iccarm]['data']['option'], 'CCDefines') self._set_multiple_option(ewp_dic[index_iccarm]['data']['option'][index...	[ "def", "_ewp_iccarm_set", "(", "self", ",", "ewp_dic", ",", "project_dic", ")", ":", "index_iccarm", "=", "self", ".", "_get_option", "(", "ewp_dic", ",", "'ICCARM'", ")", "index_option", "=", "self", ".", "_get_option", "(", "ewp_dic", "[", "index_iccarm", ...	73.818182	0.009732
def set(self, key, value): """Set a value in the `Bison` configuration. Args: key (str): The configuration key to set a new value for. value: The value to set. """ # the configuration changes, so we invalidate the cached config self._full_config = None ...	[ "def", "set", "(", "self", ",", "key", ",", "value", ")", ":", "# the configuration changes, so we invalidate the cached config", "self", ".", "_full_config", "=", "None", "self", ".", "_override", "[", "key", "]", "=", "value" ]	34.4	0.005666
def check_dict(self, opt, value): '''Take json as dictionary parameter''' try: return json.loads(value) except: raise optparse.OptionValueError("Option %s: invalid dict value: %r" % (opt, value))	[ "def", "check_dict", "(", "self", ",", "opt", ",", "value", ")", ":", "try", ":", "return", "json", ".", "loads", "(", "value", ")", "except", ":", "raise", "optparse", ".", "OptionValueError", "(", "\"Option %s: invalid dict value: %r\"", "%", "(", "opt", ...	35.666667	0.022831
def run(module_name, args=None, env_vars=None, wait=True, capture_error=False): # type: (str, list, dict, bool, bool) -> subprocess.Popen """Run Python module as a script. Search sys.path for the named module and execute its contents as the __main__ module. Since the argument is a module name, you mus...	[ "def", "run", "(", "module_name", ",", "args", "=", "None", ",", "env_vars", "=", "None", ",", "wait", "=", "True", ",", "capture_error", "=", "False", ")", ":", "# type: (str, list, dict, bool, bool) -> subprocess.Popen", "args", "=", "args", "or", "[", "]", ...	50.328125	0.006699
def crown(self, depth=2): """ Returns a list of leaves, nodes connected to leaves, etc. """ nodes = [] for node in self.leaves: nodes += node.flatten(depth-1) return cluster.unique(nodes)	[ "def", "crown", "(", "self", ",", "depth", "=", "2", ")", ":", "nodes", "=", "[", "]", "for", "node", "in", "self", ".", "leaves", ":", "nodes", "+=", "node", ".", "flatten", "(", "depth", "-", "1", ")", "return", "cluster", ".", "unique", "(", ...	37	0.013216
def format(self, indent_level, indent_size=4): """Format this verifier Returns: string: A formatted string """ desc = self.format_name('String') return self.wrap_lines(desc, indent_level, indent_size=indent_size)	[ "def", "format", "(", "self", ",", "indent_level", ",", "indent_size", "=", "4", ")", ":", "desc", "=", "self", ".", "format_name", "(", "'String'", ")", "return", "self", ".", "wrap_lines", "(", "desc", ",", "indent_level", ",", "indent_size", "=", "ind...	28.666667	0.007519
def in_book_search(request): """Full text, in-book search.""" results = {} args = request.matchdict ident_hash = args['ident_hash'] args['search_term'] = request.params.get('q', '') query_type = request.params.get('query_type', '') combiner = '' if query_type: if query_type.low...	[ "def", "in_book_search", "(", "request", ")", ":", "results", "=", "{", "}", "args", "=", "request", ".", "matchdict", "ident_hash", "=", "args", "[", "'ident_hash'", "]", "args", "[", "'search_term'", "]", "=", "request", ".", "params", ".", "get", "(",...	33.627451	0.000567
def assign_highest_value(exposure, hazard): """Assign the highest hazard value to an indivisible feature. For indivisible polygon exposure layers such as buildings, we need to assigned the greatest hazard that each polygon touches and use that as the effective hazard class. Issue https://github.co...	[ "def", "assign_highest_value", "(", "exposure", ",", "hazard", ")", ":", "output_layer_name", "=", "assign_highest_value_steps", "[", "'output_layer_name'", "]", "hazard_inasafe_fields", "=", "hazard", ".", "keywords", "[", "'inasafe_fields'", "]", "if", "not", "hazar...	36.481818	0.000243
def __threshold(self, ymx_i): """ Calculates the difference threshold for a given difference local maximum. Parameters ----------- ymx_i : float The normalized y value of a local maximum. """ return ymx_i - (self.S * np.diff(self.xsn).mean())	[ "def", "__threshold", "(", "self", ",", "ymx_i", ")", ":", "return", "ymx_i", "-", "(", "self", ".", "S", "*", "np", ".", "diff", "(", "self", ".", "xsn", ")", ".", "mean", "(", ")", ")" ]	28.090909	0.009404
def load_gifti(filename, to='auto'): ''' load_gifti(filename) yields the nibabel gifti data structure loaded by nibabel from the given filename. Currently, this load method is not particlarly sophisticated and simply returns this data. The optional argument to may be used to coerce the resu...	[ "def", "load_gifti", "(", "filename", ",", "to", "=", "'auto'", ")", ":", "dat", "=", "nib", ".", "load", "(", "filename", ")", "to", "=", "'raw'", "if", "to", "is", "None", "else", "to", ".", "lower", "(", ")", "if", "to", "in", "[", "'raw'", ...	50.596774	0.007505
def ge(self, value): """Construct a greater than or equal to (``>=``) filter. :param value: Filter value :return: :class:`filters.Field <filters.Field>` object :rtype: filters.Field """ self.op = '>=' self.negate_op = '<' self.value = self._value(value) ...	[ "def", "ge", "(", "self", ",", "value", ")", ":", "self", ".", "op", "=", "'>='", "self", ".", "negate_op", "=", "'<'", "self", ".", "value", "=", "self", ".", "_value", "(", "value", ")", "return", "self" ]	29.818182	0.005917
def reduce(self, mapped_props, aggregated, value_type, visitor): """This reduction is called to combine the mapped slot and collection item values into a single value for return. The default implementation tries to behave naturally; you'll almost always get a dict back when mapping over...	[ "def", "reduce", "(", "self", ",", "mapped_props", ",", "aggregated", ",", "value_type", ",", "visitor", ")", ":", "reduced", "=", "None", "if", "mapped_props", ":", "reduced", "=", "dict", "(", "(", "k", ".", "name", ",", "v", ")", "for", "k", ",", ...	41.291667	0.002957
def sum(self, axis=None, dtype=None, out=None, keepdims=False): """Return the sum of ``self``. See Also -------- numpy.sum prod """ return self.elem.__array_ufunc__( np.add, 'reduce', self.elem, axis=axis, dtype=dtype, out=(out,), keepdims...	[ "def", "sum", "(", "self", ",", "axis", "=", "None", ",", "dtype", "=", "None", ",", "out", "=", "None", ",", "keepdims", "=", "False", ")", ":", "return", "self", ".", "elem", ".", "__array_ufunc__", "(", "np", ".", "add", ",", "'reduce'", ",", ...	29.090909	0.006061
def google_analytics(parser, token): """ Google Analytics tracking template tag. Renders Javascript code to track page visits. You must supply your website property ID (as a string) in the ``GOOGLE_ANALYTICS_PROPERTY_ID`` setting. """ bits = token.split_contents() if len(bits) > 1: ...	[ "def", "google_analytics", "(", "parser", ",", "token", ")", ":", "bits", "=", "token", ".", "split_contents", "(", ")", "if", "len", "(", "bits", ")", ">", "1", ":", "raise", "TemplateSyntaxError", "(", "\"'%s' takes no arguments\"", "%", "bits", "[", "0"...	34.083333	0.002381
def minValue(self, value): """gets/sets the min value""" if isinstance(value, [int, float, long]): self._rangeMin = value	[ "def", "minValue", "(", "self", ",", "value", ")", ":", "if", "isinstance", "(", "value", ",", "[", "int", ",", "float", ",", "long", "]", ")", ":", "self", ".", "_rangeMin", "=", "value" ]	36.5	0.013423
def nearest_roads(client, points): """Find the closest road segments for each point Takes up to 100 independent coordinates, and returns the closest road segment for each point. The points passed do not need to be part of a continuous path. :param points: The points for which the nearest road segm...	[ "def", "nearest_roads", "(", "client", ",", "points", ")", ":", "params", "=", "{", "\"points\"", ":", "convert", ".", "location_list", "(", "points", ")", "}", "return", "client", ".", "_request", "(", "\"/v1/nearestRoads\"", ",", "params", ",", "base_url",...	37.285714	0.004981
def has_previous_assessment_section(self, assessment_section_id): """Tests if there is a previous assessment section in the assessment following the given assessment section ``Id``. arg: assessment_section_id (osid.id.Id): ``Id`` of the ``AssessmentSection`` return: (boolean)...	[ "def", "has_previous_assessment_section", "(", "self", ",", "assessment_section_id", ")", ":", "try", ":", "self", ".", "get_previous_assessment_section", "(", "assessment_section_id", ")", "except", "errors", ".", "IllegalState", ":", "return", "False", "else", ":", ...	47.047619	0.002976
def daemon(self): """ Return whether process is a daemon :return: """ if self._process: return self._process.daemon else: return self._pargs.get('daemonic', False)	[ "def", "daemon", "(", "self", ")", ":", "if", "self", ".", "_process", ":", "return", "self", ".", "_process", ".", "daemon", "else", ":", "return", "self", ".", "_pargs", ".", "get", "(", "'daemonic'", ",", "False", ")" ]	25.222222	0.008511
def unselect(self, rows, status=True, progress=True): "Unselect given rows. Don't show progress if progress=False; don't show status if status=False." before = len(self._selectedRows) for r in (Progress(rows, 'unselecting') if progress else rows): self.unselectRow(r) if statu...	[ "def", "unselect", "(", "self", ",", "rows", ",", "status", "=", "True", ",", "progress", "=", "True", ")", ":", "before", "=", "len", "(", "self", ".", "_selectedRows", ")", "for", "r", "in", "(", "Progress", "(", "rows", ",", "'unselecting'", ")", ...	60	0.00939
def accept_default_labels(self, other): """Applies labels for default meta labels from other onto self. Parameters ---------- other : Meta Meta object to take default labels from Returns ------- Meta """ self...	[ "def", "accept_default_labels", "(", "self", ",", "other", ")", ":", "self", ".", "units_label", "=", "other", ".", "units_label", "self", ".", "name_label", "=", "other", ".", "name_label", "self", ".", "notes_label", "=", "other", ".", "notes_label", "self...	29.2	0.006631
def get_html(self): """Method to convert the repository list to a search results page.""" here = path.abspath(path.dirname(__file__)) env = Environment(loader=FileSystemLoader(path.join(here, "res/"))) suggest = env.get_template("suggest.htm.j2") return suggest.render( ...	[ "def", "get_html", "(", "self", ")", ":", "here", "=", "path", ".", "abspath", "(", "path", ".", "dirname", "(", "__file__", ")", ")", "env", "=", "Environment", "(", "loader", "=", "FileSystemLoader", "(", "path", ".", "join", "(", "here", ",", "\"r...	35.333333	0.004598
def laplacian_pca(self, coordinates, num_dims=None, beta=0.5): '''Graph-Laplacian PCA (CVPR 2013). coordinates : (n,d) array-like, assumed to be mean-centered. beta : float in [0,1], scales how much PCA/LapEig contributes. Returns an approximation of input coordinates, ala PCA.''' X = np.atleast_2d(...	[ "def", "laplacian_pca", "(", "self", ",", "coordinates", ",", "num_dims", "=", "None", ",", "beta", "=", "0.5", ")", ":", "X", "=", "np", ".", "atleast_2d", "(", "coordinates", ")", "L", "=", "self", ".", "laplacian", "(", "normed", "=", "True", ")",...	47.375	0.003881
def query_walkers(): """Return query walker instances.""" return [ import_string(walker)() if isinstance(walker, six.string_types) else walker() for walker in current_app.config[ 'COLLECTIONS_QUERY_WALKERS'] ]	[ "def", "query_walkers", "(", ")", ":", "return", "[", "import_string", "(", "walker", ")", "(", ")", "if", "isinstance", "(", "walker", ",", "six", ".", "string_types", ")", "else", "walker", "(", ")", "for", "walker", "in", "current_app", ".", "config",...	34.714286	0.004016
def do_raw(self, subcmd, opts, message): """${cmd_name}: dump the complete raw message ${cmd_usage} """ client = MdClient(self.maildir) client.getraw(message, self.stdout)	[ "def", "do_raw", "(", "self", ",", "subcmd", ",", "opts", ",", "message", ")", ":", "client", "=", "MdClient", "(", "self", ".", "maildir", ")", "client", ".", "getraw", "(", "message", ",", "self", ".", "stdout", ")" ]	29.428571	0.009434
def adjacent(self, other): """ Returns True if ranges are directly next to each other but does not overlap. >>> intrange(1, 5).adjacent(intrange(5, 10)) True >>> intrange(1, 5).adjacent(intrange(10, 15)) False The empty set is not adjacen...	[ "def", "adjacent", "(", "self", ",", "other", ")", ":", "if", "not", "self", ".", "is_valid_range", "(", "other", ")", ":", "raise", "TypeError", "(", "\"Unsupported type to test for inclusion '{0.__class__.__name__}'\"", ".", "format", "(", "other", ")", ")", "...	36.433333	0.003565
def get_queryset(self, request): ''' Restrict the listed assignments for the current user.''' qs = super(AssignmentAdmin, self).get_queryset(request) if not request.user.is_superuser: qs = qs.filter(course__active=True).filter(Q(course__tutors__pk=request.user.pk) \| Q(course__owner=r...	[ "def", "get_queryset", "(", "self", ",", "request", ")", ":", "qs", "=", "super", "(", "AssignmentAdmin", ",", "self", ")", ".", "get_queryset", "(", "request", ")", "if", "not", "request", ".", "user", ".", "is_superuser", ":", "qs", "=", "qs", ".", ...	62.5	0.007895
def convert_units(self, desired, guess=False): """ Convert the units of the mesh into a specified unit. Parameters ---------- desired : string Units to convert to (eg 'inches') guess : boolean If self.units are not defined should we guess th...	[ "def", "convert_units", "(", "self", ",", "desired", ",", "guess", "=", "False", ")", ":", "units", ".", "_convert_units", "(", "self", ",", "desired", ",", "guess", ")", "return", "self" ]	31.357143	0.004425
def organize_models(self, outdir, force_rerun=False): """Organize and rename SWISS-MODEL models to a single folder with a name containing template information. Args: outdir (str): New directory to copy renamed models to force_rerun (bool): If models should be copied again even i...	[ "def", "organize_models", "(", "self", ",", "outdir", ",", "force_rerun", "=", "False", ")", ":", "uniprot_to_swissmodel", "=", "defaultdict", "(", "list", ")", "for", "u", ",", "models", "in", "self", ".", "all_models", ".", "items", "(", ")", ":", "for...	50.461538	0.005984
def editfile(fpath): """ Runs gvim. Can also accept a module / class / function """ if not isinstance(fpath, six.string_types): from six import types print('Rectify to module fpath = %r' % (fpath,)) if isinstance(fpath, types.ModuleType): fpath = fpath.__file__ else: ...	[ "def", "editfile", "(", "fpath", ")", ":", "if", "not", "isinstance", "(", "fpath", ",", "six", ".", "string_types", ")", ":", "from", "six", "import", "types", "print", "(", "'Rectify to module fpath = %r'", "%", "(", "fpath", ",", ")", ")", "if", "isin...	35.466667	0.002745
def register(linter): """required method to auto register this checker""" linter.register_checker(EncodingChecker(linter)) linter.register_checker(ByIdManagedMessagesChecker(linter))	[ "def", "register", "(", "linter", ")", ":", "linter", ".", "register_checker", "(", "EncodingChecker", "(", "linter", ")", ")", "linter", ".", "register_checker", "(", "ByIdManagedMessagesChecker", "(", "linter", ")", ")" ]	47.75	0.005155
def get_service_by_name(self, name): """ Implementation of :meth:`twitcher.api.IRegistry.get_service_by_name`. """ try: service = self.store.fetch_by_name(name=name) except Exception: LOGGER.error('Could not get service with name %s', name) ret...	[ "def", "get_service_by_name", "(", "self", ",", "name", ")", ":", "try", ":", "service", "=", "self", ".", "store", ".", "fetch_by_name", "(", "name", "=", "name", ")", "except", "Exception", ":", "LOGGER", ".", "error", "(", "'Could not get service with nam...	33.090909	0.005348
def neg(self): """ Unary operation: neg :return: 0 - self """ si = StridedInterval(bits=self.bits, stride=0, lower_bound=0, upper_bound=0).sub(self) si.uninitialized = self.uninitialized return si	[ "def", "neg", "(", "self", ")", ":", "si", "=", "StridedInterval", "(", "bits", "=", "self", ".", "bits", ",", "stride", "=", "0", ",", "lower_bound", "=", "0", ",", "upper_bound", "=", "0", ")", ".", "sub", "(", "self", ")", "si", ".", "uninitia...	24.5	0.011811
def loadMsbwt(self, dirName, logger): ''' This functions loads a BWT file and constructs total counts, indexes start positions, and constructs an FM index in memory @param dirName - the directory to load, inside should be '<DIR>/comp_msbwt.npy' or it will fail ''' #open the file ...	[ "def", "loadMsbwt", "(", "self", ",", "dirName", ",", "logger", ")", ":", "#open the file with our BWT in it", "self", ".", "dirName", "=", "dirName", "self", ".", "bwt", "=", "np", ".", "load", "(", "self", ".", "dirName", "+", "'/comp_msbwt.npy'", ",", "...	44.538462	0.011844
def blobs(shape: List[int], porosity: float = 0.5, blobiness: int = 1): """ Generates an image containing amorphous blobs Parameters ---------- shape : list The size of the image to generate in [Nx, Ny, Nz] where N is the number of voxels porosity : float If specified, ...	[ "def", "blobs", "(", "shape", ":", "List", "[", "int", "]", ",", "porosity", ":", "float", "=", "0.5", ",", "blobiness", ":", "int", "=", "1", ")", ":", "blobiness", "=", "sp", ".", "array", "(", "blobiness", ")", "shape", "=", "sp", ".", "array"...	30	0.000769
def auto_slug_after_insert(mapper, connection, target): """Generate a slug from entity_type and id, unless slug is already set.""" if target.slug is None: target.slug = "{name}{sep}{id}".format( name=target.entity_class.lower(), sep=target.SLUG_SEPARATOR, id=target.id )	[ "def", "auto_slug_after_insert", "(", "mapper", ",", "connection", ",", "target", ")", ":", "if", "target", ".", "slug", "is", "None", ":", "target", ".", "slug", "=", "\"{name}{sep}{id}\"", ".", "format", "(", "name", "=", "target", ".", "entity_class", "...	50.166667	0.006536
def append(self, obj): """Append an object to end. If the object is a string, appends a :class:`Word <Word>` object. """ if isinstance(obj, basestring): return self._collection.append(Word(obj)) else: return self._collection.append(obj)	[ "def", "append", "(", "self", ",", "obj", ")", ":", "if", "isinstance", "(", "obj", ",", "basestring", ")", ":", "return", "self", ".", "_collection", ".", "append", "(", "Word", "(", "obj", ")", ")", "else", ":", "return", "self", ".", "_collection"...	33.125	0.003676
def _prt_line_detail(self, prt, values, lnum=""): """Print header and field values in a readable format.""" #### data = zip(self.req_str, self.ntgafobj._fields, values) data = zip(self.req_str, self.flds, values) txt = ["{:2}) {:3} {:20} {}".format(i, req, hdr, val) for i, (req, hdr, val...	[ "def", "_prt_line_detail", "(", "self", ",", "prt", ",", "values", ",", "lnum", "=", "\"\"", ")", ":", "#### data = zip(self.req_str, self.ntgafobj._fields, values)", "data", "=", "zip", "(", "self", ".", "req_str", ",", "self", ".", "flds", ",", "values", ")"...	68.5	0.009615
def first(self) -> Signature: """ Retrieve the first Signature ordered by mangling descendant """ k = sorted(self._hsig.keys()) return self._hsig[k[0]]	[ "def", "first", "(", "self", ")", "->", "Signature", ":", "k", "=", "sorted", "(", "self", ".", "_hsig", ".", "keys", "(", ")", ")", "return", "self", ".", "_hsig", "[", "k", "[", "0", "]", "]" ]	43	0.011429
def main(): """Program entry point""" parser = argparse.ArgumentParser() parser.add_argument("path", help="Path to the CAPTCHA image file") parser.add_argument("--prefix", help="Checkpoint prefix [Default 'ocr']", default='ocr') parser.add_argument("--epoch", help="Checkpoint epoch [Default 100]", t...	[ "def", "main", "(", ")", ":", "parser", "=", "argparse", ".", "ArgumentParser", "(", ")", "parser", ".", "add_argument", "(", "\"path\"", ",", "help", "=", "\"Path to the CAPTCHA image file\"", ")", "parser", ".", "add_argument", "(", "\"--prefix\"", ",", "hel...	40.791667	0.00499
async def read(self): """ Read from the box in a blocking manner. :returns: An item from the box. """ result = await self._queue.get() self._can_write.set() if self._queue.empty(): self._can_read.clear() return result	[ "async", "def", "read", "(", "self", ")", ":", "result", "=", "await", "self", ".", "_queue", ".", "get", "(", ")", "self", ".", "_can_write", ".", "set", "(", ")", "if", "self", ".", "_queue", ".", "empty", "(", ")", ":", "self", ".", "_can_read...	20.285714	0.006734
def run_wfunc(self): ''' Execute a wrapper function Returns tuple of (json_data, '') ''' # Ensure that opts/grains are up to date # Execute routine data_cache = False data = None cdir = os.path.join(self.opts['cachedir'], 'minions', self.id) ...	[ "def", "run_wfunc", "(", "self", ")", ":", "# Ensure that opts/grains are up to date", "# Execute routine", "data_cache", "=", "False", "data", "=", "None", "cdir", "=", "os", ".", "path", ".", "join", "(", "self", ".", "opts", "[", "'cachedir'", "]", ",", "...	41.282723	0.001486
def process_kwargs(self, kwargs, prefix='default_', delete=True): """ set self attributes based on kwargs, optionally deleting kwargs that are processed """ processed = [] for k in kwargs: if hasattr(self, prefix + k): processed += [k] ...	[ "def", "process_kwargs", "(", "self", ",", "kwargs", ",", "prefix", "=", "'default_'", ",", "delete", "=", "True", ")", ":", "processed", "=", "[", "]", "for", "k", "in", "kwargs", ":", "if", "hasattr", "(", "self", ",", "prefix", "+", "k", ")", ":...	35.166667	0.006928
def _make_names_unique(animations): """ Given a list of animations, some of which might have duplicate names, rename the first one to be <duplicate>_0, the second <duplicate>_1, <duplicate>_2, etc.""" counts = {} for a in animations: c = counts.get(a['name'], 0) + 1 counts[a['nam...	[ "def", "_make_names_unique", "(", "animations", ")", ":", "counts", "=", "{", "}", "for", "a", "in", "animations", ":", "c", "=", "counts", ".", "get", "(", "a", "[", "'name'", "]", ",", "0", ")", "+", "1", "counts", "[", "a", "[", "'name'", "]",...	32.1875	0.003774
def _create_intermediate_target(self, address, suffix): """ :param string address: A target address. :param string suffix: A string used as a suffix of the intermediate target name. :returns: The address of a synthetic intermediary target. """ if not isinstance(address, string_types): rais...	[ "def", "_create_intermediate_target", "(", "self", ",", "address", ",", "suffix", ")", ":", "if", "not", "isinstance", "(", "address", ",", "string_types", ")", ":", "raise", "self", ".", "ExpectedAddressError", "(", "\"Expected string address argument, got type {type...	40.166667	0.005673
def mdprint(values, plain=None, options): """ Convert HTML to VTML and then print it. Follows same semantics as vtmlprint. """ print([mdrender(x, plain=plain) for x in values], **options)	[ "def", "mdprint", "(", "", "values", ",", "plain", "=", "None", ",", "", "", "options", ")", ":", "print", "(", "", "[", "mdrender", "(", "x", ",", "plain", "=", "plain", ")", "for", "x", "in", "values", "]", ",", "", "", "options", ")" ]	50	0.004926
def update_assembly(data): """ Create a new Assembly() and convert as many of our old params to the new version as we can. Also report out any parameters that are removed and what their values are. """ print("##############################################################") print("Updating...	[ "def", "update_assembly", "(", "data", ")", ":", "print", "(", "\"##############################################################\"", ")", "print", "(", "\"Updating assembly to current version\"", ")", "## New assembly object to update pdate from.", "new_assembly", "=", "ip", ".",...	42.395833	0.009606
def _set_params(self, p): """ change parameters in OrderedDict to list with or without uncertainties :param p: parameters in OrderedDict :return: parameters in list :note: internal function """ if self.force_norm: params = [value.n for key, value in p...	[ "def", "_set_params", "(", "self", ",", "p", ")", ":", "if", "self", ".", "force_norm", ":", "params", "=", "[", "value", ".", "n", "for", "key", ",", "value", "in", "p", ".", "items", "(", ")", "]", "else", ":", "params", "=", "[", "value", "f...	31.538462	0.004739
def tas53(msg): """Aircraft true airspeed, BDS 5,3 message Args: msg (String): 28 bytes hexadecimal message Returns: float: true airspeed in knots """ d = hex2bin(data(msg)) if d[33] == '0': return None tas = bin2int(d[34:46]) * 0.5 # kts return round(tas, 1...	[ "def", "tas53", "(", "msg", ")", ":", "d", "=", "hex2bin", "(", "data", "(", "msg", ")", ")", "if", "d", "[", "33", "]", "==", "'0'", ":", "return", "None", "tas", "=", "bin2int", "(", "d", "[", "34", ":", "46", "]", ")", "*", "0.5", "# kts...	19.125	0.003115
def codec_desc(self): """string or None""" info = self.decSpecificInfo desc = None if info is not None: desc = info.description return desc	[ "def", "codec_desc", "(", "self", ")", ":", "info", "=", "self", ".", "decSpecificInfo", "desc", "=", "None", "if", "info", "is", "not", "None", ":", "desc", "=", "info", ".", "description", "return", "desc" ]	23.125	0.010417
def cal_frame_according_boundaries(left, right, top, bottom, parent_size, gaphas_editor=True, group=True): """ Generate margin and relative position and size handed boundary parameter and parent size """ # print("parent_size ->", parent_size) margin = cal_margin(parent_size) # Add margin and ensure that...	[ "def", "cal_frame_according_boundaries", "(", "left", ",", "right", ",", "top", ",", "bottom", ",", "parent_size", ",", "gaphas_editor", "=", "True", ",", "group", "=", "True", ")", ":", "# print(\"parent_size ->\", parent_size)", "margin", "=", "cal_margin", "(",...	49.166667	0.003326
def _chi_squared(self, proportions, margin, observed): """return ndarray of chi-squared measures for proportions' columns. proportions (ndarray): The basis of chi-squared calcualations margin (ndarray): Column margin for proportions (See `def _margin`) observed (ndarray): Row marg...	[ "def", "_chi_squared", "(", "self", ",", "proportions", ",", "margin", ",", "observed", ")", ":", "n", "=", "self", ".", "_element_count", "chi_squared", "=", "np", ".", "zeros", "(", "[", "n", ",", "n", "]", ")", "for", "i", "in", "xrange", "(", "...	45.764706	0.003778
def root_and_children_to_graph(self,root): """Take a root node and its children and make them into graphs""" g = Graph() g.add_node(root) edges = [] edges += self.get_node_edges(root,"outgoing") for c in self.get_children(root): g.add_node(c) edges += self.get_node_ed...	[ "def", "root_and_children_to_graph", "(", "self", ",", "root", ")", ":", "g", "=", "Graph", "(", ")", "g", ".", "add_node", "(", "root", ")", "edges", "=", "[", "]", "edges", "+=", "self", ".", "get_node_edges", "(", "root", ",", "\"outgoing\"", ")", ...	34.181818	0.044041
def sys_writev(self, fd, iov, count): """ Works just like C{sys_write} except that multiple buffers are written out. :rtype: int :param fd: the file descriptor of the file to write. :param iov: the buffer where the the bytes to write are taken. :param count: amount of C{...	[ "def", "sys_writev", "(", "self", ",", "fd", ",", "iov", ",", "count", ")", ":", "cpu", "=", "self", ".", "current", "ptrsize", "=", "cpu", ".", "address_bit_size", "sizeof_iovec", "=", "2", "*", "(", "ptrsize", "//", "8", ")", "total", "=", "0", "...	38.7	0.004202
def _set_service(self, v, load=False): """ Setter method for service, mapped from YANG variable /service (container) If this variable is read-only (config: false) in the source YANG file, then _set_service is considered as a private method. Backends looking to populate this variable should do so...	[ "def", "_set_service", "(", "self", ",", "v", ",", "load", "=", "False", ")", ":", "if", "hasattr", "(", "v", ",", "\"_utype\"", ")", ":", "v", "=", "v", ".", "_utype", "(", "v", ")", "try", ":", "t", "=", "YANGDynClass", "(", "v", ",", "base",...	70.863636	0.005696
def cli(sequencepath, report, refseq_database): """ Pass command line arguments to, and run the feature extraction functions """ main(sequencepath, report, refseq_database, num_threads=multiprocessing.cpu_count())	[ "def", "cli", "(", "sequencepath", ",", "report", ",", "refseq_database", ")", ":", "main", "(", "sequencepath", ",", "report", ",", "refseq_database", ",", "num_threads", "=", "multiprocessing", ".", "cpu_count", "(", ")", ")" ]	45	0.008734
def changes_since(self, domain, date_or_datetime): """ Gets the changes for a domain since the specified date/datetime. The date can be one of: - a Python datetime object - a Python date object - a string in the format 'YYYY-MM-YY HH:MM:SS' - a str...	[ "def", "changes_since", "(", "self", ",", "domain", ",", "date_or_datetime", ")", ":", "domain_id", "=", "utils", ".", "get_id", "(", "domain", ")", "dt", "=", "utils", ".", "iso_time_string", "(", "date_or_datetime", ",", "show_tzinfo", "=", "True", ")", ...	42.724138	0.001579
def pretty_dump(fn): """ Decorator used to output prettified JSON. ``response.content_type`` is set to ``application/json; charset=utf-8``. Args: fn (fn pointer): Function returning any basic python data structure. Returns: str: Data converted to prettified JSON. """ @wrap...	[ "def", "pretty_dump", "(", "fn", ")", ":", "@", "wraps", "(", "fn", ")", "def", "pretty_dump_wrapper", "(", "", "args", ",", "", "*", "kwargs", ")", ":", "response", ".", "content_type", "=", "\"application/json; charset=utf-8\"", "return", "json", ".", ...	24.16	0.001592
def parse_conf(self, keys=[]): """Parse configuration values from the database. The extension must have been previously initialized. If a key is not found in the database, it will be created with the default value specified. Arguments: keys (list[str]): list of key...	[ "def", "parse_conf", "(", "self", ",", "keys", "=", "[", "]", ")", ":", "confs", "=", "self", ".", "app", ".", "config", ".", "get", "(", "'WAFFLE_CONFS'", ",", "{", "}", ")", "if", "not", "keys", ":", "keys", "=", "confs", ".", "keys", "(", ")...	29.511111	0.001458
def to_file(file_): """Serializes file to id string :param file_: object to serialize :return: string id """ from sevenbridges.models.file import File if not file_: raise SbgError('File is required!') elif isinstance(file_, File): return fi...	[ "def", "to_file", "(", "file_", ")", ":", "from", "sevenbridges", ".", "models", ".", "file", "import", "File", "if", "not", "file_", ":", "raise", "SbgError", "(", "'File is required!'", ")", "elif", "isinstance", "(", "file_", ",", "File", ")", ":", "r...	32.571429	0.004264
def inasafe_field_header(field, feature, parent): """Retrieve a header name of the field name from definitions. For instance: inasafe_field_header('minimum_needs__clean_water') -> 'Clean water' """ _ = feature, parent # NOQA age_fields = [under_5_displaced_count_field, over_60_displaced_count_...	[ "def", "inasafe_field_header", "(", "field", ",", "feature", ",", "parent", ")", ":", "_", "=", "feature", ",", "parent", "# NOQA", "age_fields", "=", "[", "under_5_displaced_count_field", ",", "over_60_displaced_count_field", "]", "symbol_mapping", "=", "{", "'ov...	35.294118	0.000811
def create_customer_request(self, fields=None, prefetch=True, **fieldargs): """Create a new customer request and return an issue Resource for it. Each keyword argument (other than the predefined ones) is treated as a field name and the argument's value is treated as the intended value for that ...	[ "def", "create_customer_request", "(", "self", ",", "fields", "=", "None", ",", "prefetch", "=", "True", ",", "", "", "fieldargs", ")", ":", "data", "=", "fields", "p", "=", "data", "[", "'serviceDeskId'", "]", "service_desk", "=", "None", "if", "isins...	46.442308	0.004461
def info(self, **kwargs): """ Get the primary information about a TV season by its season number. Args: language: (optional) ISO 639 code. append_to_response: (optional) Comma separated, any TV series method. Returns: ...	[ "def", "info", "(", "self", ",", "", "", "kwargs", ")", ":", "path", "=", "self", ".", "_get_series_id_season_number_path", "(", "'info'", ")", "response", "=", "self", ".", "_GET", "(", "path", ",", "kwargs", ")", "self", ".", "_set_attrs_to_values", ...	32.176471	0.003552
def section_end_info(template, tag_key, state, index): """ Given the tag key of an opening section tag, find the corresponding closing tag (if it exists) and return information about that match. """ state.section.push(tag_key) match = None matchinfo = None search_index = index whil...	[ "def", "section_end_info", "(", "template", ",", "tag_key", ",", "state", ",", "index", ")", ":", "state", ".", "section", ".", "push", "(", "tag_key", ")", "match", "=", "None", "matchinfo", "=", "None", "search_index", "=", "index", "while", "state", "...	35.848485	0.000823
def _on_stream_disconnect(self, stream): """ Respond to disconnection of a local stream by propagating DEL_ROUTE for any contexts we know were attached to it. """ # During a stream crash it is possible for disconnect signal to fire # twice, in which case ignore the second...	[ "def", "_on_stream_disconnect", "(", "self", ",", "stream", ")", ":", "# During a stream crash it is possible for disconnect signal to fire", "# twice, in which case ignore the second instance.", "routes", "=", "self", ".", "_routes_by_stream", ".", "pop", "(", "stream", ",", ...	42.285714	0.002203
def axes(self, axes): '''Set the angular axis of rotation for this joint. Parameters ---------- axes : list containing one 3-tuple of floats A list of the axes for this joint. For a hinge joint, which has one degree of freedom, this must contain one 3-tuple speci...	[ "def", "axes", "(", "self", ",", "axes", ")", ":", "self", ".", "amotor", ".", "axes", "=", "[", "axes", "[", "0", "]", "]", "self", ".", "ode_obj", ".", "setAxis", "(", "tuple", "(", "axes", "[", "0", "]", ")", ")" ]	38	0.004283
def cancel(self, mark_completed_as_cancelled=False): """ Cancel the future. If the future has not been started yet, it will never start running. If the future is already running, it will run until the worker function exists. The worker function can check if the future has been cancelled using the :m...	[ "def", "cancel", "(", "self", ",", "mark_completed_as_cancelled", "=", "False", ")", ":", "with", "self", ".", "_lock", ":", "if", "not", "self", ".", "_completed", "or", "mark_completed_as_cancelled", ":", "self", ".", "_cancelled", "=", "True", "callbacks", ...	42.631579	0.003623
def folderitem(self, obj, item, index): """Service triggered each time an item is iterated in folderitems. The use of this service prevents the extra-loops in child objects. :obj: the instance of the class to be foldered :item: dict containing the properties of the object to be used by...	[ "def", "folderitem", "(", "self", ",", "obj", ",", "item", ",", "index", ")", ":", "item", "=", "super", "(", "ReferenceSamplesView", ",", "self", ")", ".", "folderitem", "(", "obj", ",", "item", ",", "index", ")", "# ensure we have an object and not a brain...	35.8	0.001813

def get_fastq_dir(fc_dir): """Retrieve the fastq directory within Solexa flowcell output. """ full_goat_bc = glob.glob(os.path.join(fc_dir, "Data", "*Firecrest*", "Bustard*")) bustard_bc = glob.glob(os.path.join(fc_dir, "Data", "Intensities", "*Bustard*")) machine_bc = os.path.join(fc_dir, "Data", "...

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def _NewMatchSection(self, val): """Create a new configuration section for each match clause. Each match clause is added to the main config, and the criterion that will trigger the match is recorded, as is the configuration. Args: val: The value following the 'match' keyword. """ section...

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def _inline_activate_venv(): """Built-in venv doesn't have activate_this.py, but doesn't need it anyway. As long as we find the correct executable, built-in venv sets up the environment automatically. See: https://bugs.python.org/issue21496#msg218455 """ components = [] for name in ("bin",...

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def setupQuery(self, query, op, editor): """ Returns the value from the editor. :param op | <str> editor | <QWidget> || None :return <bool> | success """ try: registry = self._operatorMap[natives...

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def update_subnet(subnet, name, profile=None): ''' Updates a subnet CLI Example: .. code-block:: bash salt '*' neutron.update_subnet subnet-name new-subnet-name :param subnet: ID or name of subnet to update :param name: Name of this subnet :param profile: Profile to build on (Opt...

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def create_transcripts_xml(video_id, video_el, resource_fs, static_dir): """ Creates xml for transcripts. For each transcript element, an associated transcript file is also created in course OLX. Arguments: video_id (str): Video id of the video. video_el (Element): lxml Element object ...

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def doGetAttrib(self, attribId): """get an attribute attribId: Identifier for the attribute to get return: response are the attribute byte array """ CardConnection.doGetAttrib(self, attribId) hresult, response = SCardGetAttrib(self.hcard, attribId) if hresult ...

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def isIdentity(M, tol=1e-06): """Check if vtkMatrix4x4 is Identity.""" for i in [0, 1, 2, 3]: for j in [0, 1, 2, 3]: e = M.GetElement(i, j) if i == j: if np.abs(e - 1) > tol: return False elif np.abs(e) > tol: return...

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def _init_journal(self, permissive=True): """Add the initialization lines to the journal. By default adds JrnObj variable and timestamp to the journal contents. Args: permissive (bool): if True most errors in journal will not cause Revit to stop journ...

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def _configure_buffer_sizes(): """Set up module globals controlling buffer sizes""" global PIPE_BUF_BYTES global OS_PIPE_SZ PIPE_BUF_BYTES = 65536 OS_PIPE_SZ = None # Teach the 'fcntl' module about 'F_SETPIPE_SZ', which is a Linux-ism, # but a good one that can drastically reduce the numbe...

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def sdiv(a, b): """Safe division: if a == b == 0, sdiv(a, b) == 1""" if len(a) != len(b): raise ValueError('Argument a and b does not have the same length') idx = 0 ret = matrix(0, (len(a), 1), 'd') for m, n in zip(a, b): try: ret[idx] = m / n except ZeroDivisionE...

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def _is_potential_multi_index(columns): """ Check whether or not the `columns` parameter could be converted into a MultiIndex. Parameters ---------- columns : array-like Object which may or may not be convertible into a MultiIndex Returns ------- boolean : Whether or not co...

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def feed(self, data): """ Add new incoming data to buffer and try to process """ self.buffer += data while len(self.buffer) >= 6: self.next_packet()

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def get_activity_ids_by_objective_bank(self, objective_bank_id): """Gets the list of ``Activity`` ``Ids`` associated with an ``ObjectiveBank``. arg: objective_bank_id (osid.id.Id): ``Id`` of the ``ObjectiveBank`` return: (osid.id.IdList) - list of related activity ``Ids`` ...

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def removeLastRow(self): """Removes the last track""" lastrow = self._segments.pop(len(self._segments)-1) if len(lastrow) > 0: raise Exception("Attempt to remove non-empty stimulus track")

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def runOnExecutor(self, *commands, oper=ACCEPT, defer_shell_expansion=False): """ This runs in the executor of the current scope. You cannot magically back out since there are no gurantees that ssh keys will be in place (they shouldn't be). """ return self.makeOutput(EXE, command...

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def saveAsPickleFile(self, path, batchSize=10): """ Save this RDD as a SequenceFile of serialized objects. The serializer used is L{pyspark.serializers.PickleSerializer}, default batch size is 10. >>> tmpFile = NamedTemporaryFile(delete=True) >>> tmpFile.close() ...

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def main(args=None): """The entry point of the application.""" if args is None: args = sys.argv[1:] # Parse command-line args = docopt(__doc__, argv=args) # Parse arguments path, address = resolve(args['<path>'], args['<address>']) host, port = split_address(address) # Validat...

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def register_all_shape_checker(shape_checker_function, arg_types, exclude=(), ignore_existing=False): """Register a gradient adder for all combinations of given types. This is a convenience shorthand for calling register_a...

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def generate_kmers(seq, k=4): """Return a generator of all the unique substrings (k-mer or q-gram strings) within a sequence/string Not effiicent for large k and long strings. Doesn't form substrings that are shorter than k, only exactly k-mers Used for algorithms like UniqTag for genome unique identi...

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def make_exception_message(exc): """ An exception is passed in and this function returns the proper string depending on the result so it is readable enough. """ if str(exc): return '%s: %s\n' % (exc.__class__.__name__, exc) else: return '%s\n' % (exc.__class__.__name__)

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def _observers_for_notification(self, ntype, sender): """Find all registered observers that should recieve notification""" keys = ( (ntype,sender), (ntype, None), (None, sender), (None,None) ) obs = set(...

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def clip_datetime(dt, tz=DEFAULT_TZ, is_dst=None): """Limit a datetime to a valid range for datetime, datetime64, and Timestamp objects >>> from datetime import timedelta >>> clip_datetime(MAX_DATETIME + timedelta(100)) == pd.Timestamp(MAX_DATETIME, tz='utc') == MAX_TIMESTAMP True >>> MAX_TIMESTAMP ...

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def default(): """Default configuration for PPO.""" # General algorithm = algorithms.PPO num_agents = 30 eval_episodes = 30 use_gpu = False # Environment normalize_ranges = True # Network network = networks.feed_forward_gaussian weight_summaries = dict( all=r'.*', policy=r'.*/policy/.*', val...

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def inject_scheme(self, b16_scheme): """Inject string $b16_scheme into self.content.""" # correctly formatted start and end of block should have already been # ascertained by _get_temp content_lines = self.content.splitlines() b16_scheme_lines = b16_scheme.splitlines() st...

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def as_representer(resource, content_type): """ Adapts the given resource and content type to a representer. :param resource: resource to adapt. :param str content_type: content (MIME) type to obtain a representer for. """ reg = get_current_registry() rpr_reg = reg.queryUtility(IRepresenter...

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def decimate_mean(self, a, maxpoints, **kwargs): """Return data *a* mean-decimated on *maxpoints*. Histograms each column into *maxpoints* bins and calculates the weighted average in each bin as the decimated data, using :func:`numkit.timeseries.mean_histogrammed_function`. The coarse g...

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def _btc_script_serialize_unit(unit): """ Encode one item of a BTC script Return the encoded item (as a string) Based on code from pybitcointools (https://github.com/vbuterin/pybitcointools) by Vitalik Buterin """ if isinstance(unit, int): # cannot be less than -1, since btc_sc...

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def _fill_naked_singles(self): """Look for naked singles, i.e. cells with ony one possible value. :return: If any Naked Single has been found. :rtype: bool """ simple_found = False for i in utils.range_(self.side): for j in utils.range_(self.side): ...

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def detect(self): """Detect all currently known devices. Returns the root device.""" root = self._actions.detect() prune_empty_node(root, set()) return root

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def export_diagram_plane_elements(root, diagram_attributes, plane_attributes): """ Creates 'diagram' and 'plane' elements for exported BPMN XML file. Returns a tuple (diagram, plane). :param root: object of Element class, representing a BPMN XML root element ('definitions'), :pa...

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def random_draw(self, size=None): """Draw random samples of the hyperparameters. Parameters ---------- size : None, int or array-like, optional The number/shape of samples to draw. If None, only one sample is returned. Default is None. """ ...

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def orientation(self): """ The angle in radians between the ``x`` axis and the major axis of the 2D Gaussian function that has the same second-order moments as the source. The angle increases in the counter-clockwise direction. """ a, b, b, c = self.covariance.f...

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def _ewp_iccarm_set(self, ewp_dic, project_dic): """ C/C++ options (ICCARM) """ index_iccarm = self._get_option(ewp_dic, 'ICCARM') index_option = self._get_option(ewp_dic[index_iccarm]['data']['option'], 'CCDefines') self._set_multiple_option(ewp_dic[index_iccarm]['data']['option'][index...

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def set(self, key, value): """Set a value in the `Bison` configuration. Args: key (str): The configuration key to set a new value for. value: The value to set. """ # the configuration changes, so we invalidate the cached config self._full_config = None ...

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def check_dict(self, opt, value): '''Take json as dictionary parameter''' try: return json.loads(value) except: raise optparse.OptionValueError("Option %s: invalid dict value: %r" % (opt, value))

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def run(module_name, args=None, env_vars=None, wait=True, capture_error=False): # type: (str, list, dict, bool, bool) -> subprocess.Popen """Run Python module as a script. Search sys.path for the named module and execute its contents as the __main__ module. Since the argument is a module name, you mus...

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def crown(self, depth=2): """ Returns a list of leaves, nodes connected to leaves, etc. """ nodes = [] for node in self.leaves: nodes += node.flatten(depth-1) return cluster.unique(nodes)

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def format(self, indent_level, indent_size=4): """Format this verifier Returns: string: A formatted string """ desc = self.format_name('String') return self.wrap_lines(desc, indent_level, indent_size=indent_size)

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def in_book_search(request): """Full text, in-book search.""" results = {} args = request.matchdict ident_hash = args['ident_hash'] args['search_term'] = request.params.get('q', '') query_type = request.params.get('query_type', '') combiner = '' if query_type: if query_type.low...

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def assign_highest_value(exposure, hazard): """Assign the highest hazard value to an indivisible feature. For indivisible polygon exposure layers such as buildings, we need to assigned the greatest hazard that each polygon touches and use that as the effective hazard class. Issue https://github.co...

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def __threshold(self, ymx_i): """ Calculates the difference threshold for a given difference local maximum. Parameters ----------- ymx_i : float The normalized y value of a local maximum. """ return ymx_i - (self.S * np.diff(self.xsn).mean())

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def load_gifti(filename, to='auto'): ''' load_gifti(filename) yields the nibabel gifti data structure loaded by nibabel from the given filename. Currently, this load method is not particlarly sophisticated and simply returns this data. The optional argument to may be used to coerce the resu...

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def ge(self, value): """Construct a greater than or equal to (``>=``) filter. :param value: Filter value :return: :class:`filters.Field <filters.Field>` object :rtype: filters.Field """ self.op = '>=' self.negate_op = '<' self.value = self._value(value) ...

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def reduce(self, mapped_props, aggregated, value_type, visitor): """This reduction is called to combine the mapped slot and collection item values into a single value for return. The default implementation tries to behave naturally; you'll almost always get a dict back when mapping over...

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def sum(self, axis=None, dtype=None, out=None, keepdims=False): """Return the sum of ``self``. See Also -------- numpy.sum prod """ return self.elem.__array_ufunc__( np.add, 'reduce', self.elem, axis=axis, dtype=dtype, out=(out,), keepdims...

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def google_analytics(parser, token): """ Google Analytics tracking template tag. Renders Javascript code to track page visits. You must supply your website property ID (as a string) in the ``GOOGLE_ANALYTICS_PROPERTY_ID`` setting. """ bits = token.split_contents() if len(bits) > 1: ...

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def minValue(self, value): """gets/sets the min value""" if isinstance(value, [int, float, long]): self._rangeMin = value

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def nearest_roads(client, points): """Find the closest road segments for each point Takes up to 100 independent coordinates, and returns the closest road segment for each point. The points passed do not need to be part of a continuous path. :param points: The points for which the nearest road segm...

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def has_previous_assessment_section(self, assessment_section_id): """Tests if there is a previous assessment section in the assessment following the given assessment section ``Id``. arg: assessment_section_id (osid.id.Id): ``Id`` of the ``AssessmentSection`` return: (boolean)...

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def daemon(self): """ Return whether process is a daemon :return: """ if self._process: return self._process.daemon else: return self._pargs.get('daemonic', False)

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def unselect(self, rows, status=True, progress=True): "Unselect given rows. Don't show progress if progress=False; don't show status if status=False." before = len(self._selectedRows) for r in (Progress(rows, 'unselecting') if progress else rows): self.unselectRow(r) if statu...

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def accept_default_labels(self, other): """Applies labels for default meta labels from other onto self. Parameters ---------- other : Meta Meta object to take default labels from Returns ------- Meta """ self...

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def get_html(self): """Method to convert the repository list to a search results page.""" here = path.abspath(path.dirname(__file__)) env = Environment(loader=FileSystemLoader(path.join(here, "res/"))) suggest = env.get_template("suggest.htm.j2") return suggest.render( ...

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def laplacian_pca(self, coordinates, num_dims=None, beta=0.5): '''Graph-Laplacian PCA (CVPR 2013). coordinates : (n,d) array-like, assumed to be mean-centered. beta : float in [0,1], scales how much PCA/LapEig contributes. Returns an approximation of input coordinates, ala PCA.''' X = np.atleast_2d(...

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def query_walkers(): """Return query walker instances.""" return [ import_string(walker)() if isinstance(walker, six.string_types) else walker() for walker in current_app.config[ 'COLLECTIONS_QUERY_WALKERS'] ]

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def do_raw(self, subcmd, opts, message): """${cmd_name}: dump the complete raw message ${cmd_usage} """ client = MdClient(self.maildir) client.getraw(message, self.stdout)

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def adjacent(self, other): """ Returns True if ranges are directly next to each other but does not overlap. >>> intrange(1, 5).adjacent(intrange(5, 10)) True >>> intrange(1, 5).adjacent(intrange(10, 15)) False The empty set is not adjacen...

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def get_queryset(self, request): ''' Restrict the listed assignments for the current user.''' qs = super(AssignmentAdmin, self).get_queryset(request) if not request.user.is_superuser: qs = qs.filter(course__active=True).filter(Q(course__tutors__pk=request.user.pk) | Q(course__owner=r...

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def convert_units(self, desired, guess=False): """ Convert the units of the mesh into a specified unit. Parameters ---------- desired : string Units to convert to (eg 'inches') guess : boolean If self.units are not defined should we guess th...

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def organize_models(self, outdir, force_rerun=False): """Organize and rename SWISS-MODEL models to a single folder with a name containing template information. Args: outdir (str): New directory to copy renamed models to force_rerun (bool): If models should be copied again even i...

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def editfile(fpath): """ Runs gvim. Can also accept a module / class / function """ if not isinstance(fpath, six.string_types): from six import types print('Rectify to module fpath = %r' % (fpath,)) if isinstance(fpath, types.ModuleType): fpath = fpath.__file__ else: ...

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def register(linter): """required method to auto register this checker""" linter.register_checker(EncodingChecker(linter)) linter.register_checker(ByIdManagedMessagesChecker(linter))

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def get_service_by_name(self, name): """ Implementation of :meth:`twitcher.api.IRegistry.get_service_by_name`. """ try: service = self.store.fetch_by_name(name=name) except Exception: LOGGER.error('Could not get service with name %s', name) ret...

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def neg(self): """ Unary operation: neg :return: 0 - self """ si = StridedInterval(bits=self.bits, stride=0, lower_bound=0, upper_bound=0).sub(self) si.uninitialized = self.uninitialized return si

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def loadMsbwt(self, dirName, logger): ''' This functions loads a BWT file and constructs total counts, indexes start positions, and constructs an FM index in memory @param dirName - the directory to load, inside should be '<DIR>/comp_msbwt.npy' or it will fail ''' #open the file ...

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def blobs(shape: List[int], porosity: float = 0.5, blobiness: int = 1): """ Generates an image containing amorphous blobs Parameters ---------- shape : list The size of the image to generate in [Nx, Ny, Nz] where N is the number of voxels porosity : float If specified, ...

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def auto_slug_after_insert(mapper, connection, target): """Generate a slug from entity_type and id, unless slug is already set.""" if target.slug is None: target.slug = "{name}{sep}{id}".format( name=target.entity_class.lower(), sep=target.SLUG_SEPARATOR, id=target.id )

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def append(self, obj): """Append an object to end. If the object is a string, appends a :class:`Word <Word>` object. """ if isinstance(obj, basestring): return self._collection.append(Word(obj)) else: return self._collection.append(obj)

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def _prt_line_detail(self, prt, values, lnum=""): """Print header and field values in a readable format.""" #### data = zip(self.req_str, self.ntgafobj._fields, values) data = zip(self.req_str, self.flds, values) txt = ["{:2}) {:3} {:20} {}".format(i, req, hdr, val) for i, (req, hdr, val...

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def first(self) -> Signature: """ Retrieve the first Signature ordered by mangling descendant """ k = sorted(self._hsig.keys()) return self._hsig[k[0]]

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def main(): """Program entry point""" parser = argparse.ArgumentParser() parser.add_argument("path", help="Path to the CAPTCHA image file") parser.add_argument("--prefix", help="Checkpoint prefix [Default 'ocr']", default='ocr') parser.add_argument("--epoch", help="Checkpoint epoch [Default 100]", t...

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async def read(self): """ Read from the box in a blocking manner. :returns: An item from the box. """ result = await self._queue.get() self._can_write.set() if self._queue.empty(): self._can_read.clear() return result

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def run_wfunc(self): ''' Execute a wrapper function Returns tuple of (json_data, '') ''' # Ensure that opts/grains are up to date # Execute routine data_cache = False data = None cdir = os.path.join(self.opts['cachedir'], 'minions', self.id) ...

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def process_kwargs(self, kwargs, prefix='default_', delete=True): """ set self attributes based on kwargs, optionally deleting kwargs that are processed """ processed = [] for k in kwargs: if hasattr(self, prefix + k): processed += [k] ...

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def _make_names_unique(animations): """ Given a list of animations, some of which might have duplicate names, rename the first one to be <duplicate>_0, the second <duplicate>_1, <duplicate>_2, etc.""" counts = {} for a in animations: c = counts.get(a['name'], 0) + 1 counts[a['nam...

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def _create_intermediate_target(self, address, suffix): """ :param string address: A target address. :param string suffix: A string used as a suffix of the intermediate target name. :returns: The address of a synthetic intermediary target. """ if not isinstance(address, string_types): rais...

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def mdprint(*values, plain=None, **options): """ Convert HTML to VTML and then print it. Follows same semantics as vtmlprint. """ print(*[mdrender(x, plain=plain) for x in values], **options)

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def update_assembly(data): """ Create a new Assembly() and convert as many of our old params to the new version as we can. Also report out any parameters that are removed and what their values are. """ print("##############################################################") print("Updating...

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def _set_params(self, p): """ change parameters in OrderedDict to list with or without uncertainties :param p: parameters in OrderedDict :return: parameters in list :note: internal function """ if self.force_norm: params = [value.n for key, value in p...

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def tas53(msg): """Aircraft true airspeed, BDS 5,3 message Args: msg (String): 28 bytes hexadecimal message Returns: float: true airspeed in knots """ d = hex2bin(data(msg)) if d[33] == '0': return None tas = bin2int(d[34:46]) * 0.5 # kts return round(tas, 1...

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def codec_desc(self): """string or None""" info = self.decSpecificInfo desc = None if info is not None: desc = info.description return desc

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def cal_frame_according_boundaries(left, right, top, bottom, parent_size, gaphas_editor=True, group=True): """ Generate margin and relative position and size handed boundary parameter and parent size """ # print("parent_size ->", parent_size) margin = cal_margin(parent_size) # Add margin and ensure that...

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def _chi_squared(self, proportions, margin, observed): """return ndarray of chi-squared measures for proportions' columns. *proportions* (ndarray): The basis of chi-squared calcualations *margin* (ndarray): Column margin for proportions (See `def _margin`) *observed* (ndarray): Row marg...

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def root_and_children_to_graph(self,root): """Take a root node and its children and make them into graphs""" g = Graph() g.add_node(root) edges = [] edges += self.get_node_edges(root,"outgoing") for c in self.get_children(root): g.add_node(c) edges += self.get_node_ed...

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def sys_writev(self, fd, iov, count): """ Works just like C{sys_write} except that multiple buffers are written out. :rtype: int :param fd: the file descriptor of the file to write. :param iov: the buffer where the the bytes to write are taken. :param count: amount of C{...

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38.7

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def _set_service(self, v, load=False): """ Setter method for service, mapped from YANG variable /service (container) If this variable is read-only (config: false) in the source YANG file, then _set_service is considered as a private method. Backends looking to populate this variable should do so...

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70.863636

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def cli(sequencepath, report, refseq_database): """ Pass command line arguments to, and run the feature extraction functions """ main(sequencepath, report, refseq_database, num_threads=multiprocessing.cpu_count())

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45

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def changes_since(self, domain, date_or_datetime): """ Gets the changes for a domain since the specified date/datetime. The date can be one of: - a Python datetime object - a Python date object - a string in the format 'YYYY-MM-YY HH:MM:SS' - a str...

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def pretty_dump(fn): """ Decorator used to output prettified JSON. ``response.content_type`` is set to ``application/json; charset=utf-8``. Args: fn (fn pointer): Function returning any basic python data structure. Returns: str: Data converted to prettified JSON. """ @wrap...

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def parse_conf(self, keys=[]): """Parse configuration values from the database. The extension must have been previously initialized. If a key is not found in the database, it will be created with the default value specified. Arguments: keys (list[str]): list of key...

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def to_file(file_): """Serializes file to id string :param file_: object to serialize :return: string id """ from sevenbridges.models.file import File if not file_: raise SbgError('File is required!') elif isinstance(file_, File): return fi...

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32.571429

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def inasafe_field_header(field, feature, parent): """Retrieve a header name of the field name from definitions. For instance: inasafe_field_header('minimum_needs__clean_water') -> 'Clean water' """ _ = feature, parent # NOQA age_fields = [under_5_displaced_count_field, over_60_displaced_count_...

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35.294118

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def create_customer_request(self, fields=None, prefetch=True, **fieldargs): """Create a new customer request and return an issue Resource for it. Each keyword argument (other than the predefined ones) is treated as a field name and the argument's value is treated as the intended value for that ...

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def info(self, **kwargs): """ Get the primary information about a TV season by its season number. Args: language: (optional) ISO 639 code. append_to_response: (optional) Comma separated, any TV series method. Returns: ...

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def section_end_info(template, tag_key, state, index): """ Given the tag key of an opening section tag, find the corresponding closing tag (if it exists) and return information about that match. """ state.section.push(tag_key) match = None matchinfo = None search_index = index whil...

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35.848485

0.000823

def _on_stream_disconnect(self, stream): """ Respond to disconnection of a local stream by propagating DEL_ROUTE for any contexts we know were attached to it. """ # During a stream crash it is possible for disconnect signal to fire # twice, in which case ignore the second...

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42.285714

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def axes(self, axes): '''Set the angular axis of rotation for this joint. Parameters ---------- axes : list containing one 3-tuple of floats A list of the axes for this joint. For a hinge joint, which has one degree of freedom, this must contain one 3-tuple speci...

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38

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def cancel(self, mark_completed_as_cancelled=False): """ Cancel the future. If the future has not been started yet, it will never start running. If the future is already running, it will run until the worker function exists. The worker function can check if the future has been cancelled using the :m...

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42.631579

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def folderitem(self, obj, item, index): """Service triggered each time an item is iterated in folderitems. The use of this service prevents the extra-loops in child objects. :obj: the instance of the class to be foldered :item: dict containing the properties of the object to be used by...

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35.8

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