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def read_length_and_key(fp): """ Helper to read descriptor key. """ length = read_fmt('I', fp)[0] key = fp.read(length or 4) if length == 0 and key not in _TERMS: logger.debug('Unknown term: %r' % (key)) _TERMS.add(key) return key
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def diff_to_new_interesting_lines(unified_diff_lines: List[str] ) -> Dict[int, str]: """ Extracts a set of 'interesting' lines out of a GNU unified diff format. Format: gnu.org/software/diffutils/manual/html_node/Detailed-Unified.html @@ from-line-numbers to-l...
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def to_ipv4(self): """ Convert (an IPv6) IP address to an IPv4 address, if possible. Only works for IPv4-compat (::/96), IPv4-mapped (::ffff/96), and 6-to-4 (2002::/16) addresses. >>> ip = IP('2002:c000:022a::') >>> print(ip.to_ipv4()) 192.0.2.42 """ ...
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def _parse_ip_stats_link_show(raw_result): """ Parse the 'ip -s link show dev <dev>' command raw output. :param str raw_result: vtysh raw result string. :rtype: dict :return: The parsed result of the show interface command in a \ dictionary of the form: :: { 'rx_b...
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def _get_configured_module(option_name, known_modules=None): """Get the module specified by the value of option_name. The value of the configuration option will be used to load the module by name from the known module list or treated as a path if not found in known_modules. Args: option_name: na...
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def dig(host): ''' Performs a DNS lookup with dig CLI Example: .. code-block:: bash salt '*' network.dig archlinux.org ''' cmd = 'dig {0}'.format(salt.utils.network.sanitize_host(host)) return __salt__['cmd.run'](cmd)
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def define(cls, start, step, num, dtype=None): """Define a new `Index`. The output is basically:: start + numpy.arange(num) * step Parameters ---------- start : `Number` The starting value of the index. step : `Number` The step size...
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def get_name(self, label_type): """ returns the most preferred label name if there isn't any correct name in the list it will return newest label name """ if label_type in self._label_values: return self._label_values[label_type][0] else: r...
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def integral_scale(u, t, tau1=0.0, tau2=1.0): """Calculate the integral scale of a time series by integrating up to the first zero crossing. """ tau, rho = autocorr_coeff(u, t, tau1, tau2) zero_cross_ind = np.where(np.diff(np.sign(rho)))[0][0] int_scale = np.trapz(rho[:zero_cross_ind], tau...
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def gaussian_prior_model_for_arguments(self, arguments): """ Parameters ---------- arguments: {Prior: float} A dictionary of arguments Returns ------- prior_models: [PriorModel] A new list of prior models with gaussian priors """ ...
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def _fsync_files(filenames): """Call fsync() a list of file names The filenames should be absolute paths already. """ touched_directories = set() mode = os.O_RDONLY # Windows if hasattr(os, 'O_BINARY'): mode |= os.O_BINARY for filename in filenames: fd = os.open(file...
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def transform_grid_from_reference_frame(self, grid): """Transform a grid of (y,x) coordinates from the reference frame of the profile to the original observer \ reference frame, including a translation from the profile's centre. Parameters ---------- grid : TransformedGrid(ndarr...
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def load_repo(client, path=None, index='git'): """ Parse a git repository with all it's commits and load it into elasticsearch using `client`. If the index doesn't exist it will be created. """ path = dirname(dirname(abspath(__file__))) if path is None else path repo_name = basename(path) re...
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def get_field_type(f): """Obtain the type name of a GRPC Message field.""" types = (t[5:] for t in dir(f) if t[:4] == 'TYPE' and getattr(f, t) == f.type) return next(types)
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def pop_group(self): """Terminates the redirection begun by a call to :meth:`push_group` or :meth:`push_group_with_content` and returns a new pattern containing the results of all drawing operations performed to the group. The :meth:`pop_group` method calls :meth:`restore`, ...
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def posterior_to_xarray(self): """Convert the posterior to an xarray dataset.""" # Do not make pyro a requirement from pyro.infer import EmpiricalMarginal try: # Try pyro>=0.3 release syntax data = { name: np.expand_dims(samples.enumerate_support().squeeze()...
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def new(self, bytes_to_skip): # type: (int) -> None ''' Create a new Rock Ridge Sharing Protocol record. Parameters: bytes_to_skip - The number of bytes to skip. Returns: Nothing. ''' if self._initialized: raise pycdlibexception.PyCdl...
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def fetch_all(self, R, depth=1, **kwargs): "Request multiple objects from API" d, e = self._fetcher.fetch_all(R, depth, kwargs) if e: raise e return d
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def on_data(self, data): """ The function called when new data has arrived. :param data: The list of data records received. """ for d in data: self._populate_sub_entity(d, 'Device') self._populate_sub_entity(d, 'Rule') date = dates.localize_da...
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def get_edu_text(text_subtree): """return the text of the given EDU subtree""" assert text_subtree.label() == SubtreeType.text return u' '.join(word.decode('utf-8') for word in text_subtree.leaves())
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def get_bbox(self, primitive): """Get the bounding box for the mesh""" accessor = primitive.attributes.get('POSITION') return accessor.min, accessor.max
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def _ConvertAttributeValueToDict(cls, attribute_value): """Converts an attribute value into a JSON dictionary. Args: attribute_value (object): an attribute value. Returns: dict|list: The JSON serialized object which can be a dictionary or a list. """ if isinstance(attribute_value, py2t...
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def sum_2_dictionaries(dicta, dictb): """Given two dictionaries of totals, where each total refers to a key in the dictionary, add the totals. E.g.: dicta = { 'a' : 3, 'b' : 1 } dictb = { 'a' : 1, 'c' : 5 } dicta + dictb = { 'a' : 4, 'b' : 1, 'c' : 5 } @param dicta:...
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def is_notifying(cls, user_or_email, instance): """Check if the watch created by notify exists.""" return super(InstanceEvent, cls).is_notifying(user_or_email, object_id=instance.pk)
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def set_scale(self, xscale=None, yscale=None, zscale=None, reset_camera=True): """ Scale all the datasets in the scene. Scaling in performed independently on the X, Y and Z axis. A scale of zero is illegal and will be replaced with one. """ if xscale is None: ...
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def _generate_payload(author_icon, title, report): ''' Prepare the payload for Slack :param author_icon: The url for the thumbnail to be displayed :param title: The title of the message :param report: A dictionary with the report of the Salt function :return: The payload ready for Slack ''' ...
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def persist(self, name): """ clear any expiration TTL set on the object :param name: str the name of the redis key :return: Future() """ with self.pipe as pipe: return pipe.persist(self.redis_key(name))
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def drop(n, it, constructor=list): """ >>> first(10,drop(10,xrange(sys.maxint),iter)) [10, 11, 12, 13, 14, 15, 16, 17, 18, 19] """ return constructor(itertools.islice(it,n,None))
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def kube_node_status_condition(self, metric, scraper_config): """ The ready status of a cluster node. v1.0+""" base_check_name = scraper_config['namespace'] + '.node' metric_name = scraper_config['namespace'] + '.nodes.by_condition' by_condition_counter = Counter() for sample in...
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def _ppf(self, uloc, left, right, cache): """ Point percentile function. Example: >>> print(chaospy.Uniform().inv([0.1, 0.2, 0.9])) [0.1 0.2 0.9] >>> print(chaospy.Add(chaospy.Uniform(), 2).inv([0.1, 0.2, 0.9])) [2.1 2.2 2.9] >>> print...
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def _build(value, property_path=None): """ The generic schema definition build method. :param value: The value to build a schema definition for :param List[str] property_path: The property path of the current type, defaults to None, optional :return: The built schema definition :rtype: Dict...
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def _init_fncsortnt(flds): """Return a sort function for sorting header GO IDs found in sections.""" if 'tinfo' in flds: if 'D1' in flds: return lambda ntgo: [ntgo.NS, -1*ntgo.tinfo, ntgo.depth, ntgo.D1, ntgo.alt] else: return lambda ntgo: [ntgo.NS...
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def raw(self): # type: () -> ClientRawResponse """Get current page as ClientRawResponse. :rtype: ClientRawResponse """ raw = ClientRawResponse(self.current_page, self._response) if self._raw_headers: raw.add_headers(self._raw_headers) return raw
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def coverage(self): """ Get the fraction of this title sequence that is matched by its reads. @return: The C{float} fraction of the title sequence matched by its reads. """ intervals = ReadIntervals(self.subjectLength) for hsp in self.hsps(): inte...
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def _get_correct_module(mod): """returns imported module check if is ``leonardo_module_conf`` specified and then import them """ module_location = getattr( mod, 'leonardo_module_conf', getattr(mod, "LEONARDO_MODULE_CONF", None)) if module_location: mod = import_module(module...
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def all_solidity_variables_used_as_args(self): """ Return the Soldiity variables directly used in a call Use of the IR to filter index access Used to catch check(msg.sender) """ if self._all_solidity_variables_used_as_args is None: self._all_solid...
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def compile(pattern, flags=0, auto_compile=None, **kwargs): # noqa A001 """Compile both the search or search and replace into one object.""" if isinstance(pattern, Bregex): if auto_compile is not None: raise ValueError("Cannot compile Bregex with a different auto_compile!") elif fl...
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def create_config_tree(config, modules, prefix=''): '''Cause every possible configuration sub-dictionary to exist. This is intended to be called very early in the configuration sequence. For each module, it checks that the corresponding configuration item exists in `config` and creates it as an empty ...
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def get_public_ip_validator(): """ Retrieves a validator for public IP address. Accepting all defaults will perform a check for an existing name or ID with no ARM-required -type parameter. """ from msrestazure.tools import is_valid_resource_id, resource_id def simple_validator(cmd, namespace): ...
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def get_node_name_from_id(node_id, nodes): """ Get the name of a node when given the node_id :param int node_id: The ID of a node :param list nodes: list of nodes from :py:meth:`generate_nodes` :return: node name :rtype: str """ node_name = '' for...
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def to_phonetics(self): """Transcribe phonetics.""" tr = Transcriber() self.transcribed_phonetics = [tr.transcribe(line) for line in self.text]
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def _deserialize(x, elementType, compress, relicReadBinFunc): """ Deserializes a bytearray @x, into an @element of the correct type, using the a relic read_bin function and the specified @compressed flag. This is the underlying implementation for deserialize G1, G2, and Gt. """ # Convert the byt...
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def hasProp(self, name): """Search an attribute associated to a node This function also looks in DTD attribute declaration for #FIXED or default declaration values unless DTD use has been turned off. """ ret = libxml2mod.xmlHasProp(self._o, name) if ret is None:return None ...
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def get_method(self, name, arg_types=()): """ searches for the method matching the name and having argument type descriptors matching those in arg_types. Parameters ========== arg_types : sequence of strings each string is a parameter type, in the non-pretty fo...
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def custom_getter_scope(custom_getter): """ Args: custom_getter: the same as in :func:`tf.get_variable` Returns: The current variable scope with a custom_getter. """ scope = tf.get_variable_scope() if get_tf_version_tuple() >= (1, 5): with tf.variable_scope( ...
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def _add_seg_to_output(out, data, enumerate_chroms=False): """Export outputs to 'seg' format compatible with IGV and GenePattern. """ out_file = "%s.seg" % os.path.splitext(out["cns"])[0] if not utils.file_exists(out_file): with file_transaction(data, out_file) as tx_out_file: cmd = ...
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def eigvec_to_eigdispl(v, q, frac_coords, mass): """ Converts a single eigenvector to an eigendisplacement in the primitive cell according to the formula:: exp(2*pi*i*(frac_coords \\dot q) / sqrt(mass) * v Compared to the modulation option in phonopy, here all the additional mu...
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def miscellaneous_menu(self, value): """ Setter for **self.__miscellaneous_menu** attribute. :param value: Attribute value. :type value: QMenu """ if value is not None: assert type(value) is QMenu, "'{0}' attribute: '{1}' type is not 'QMenu'!".format( ...
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def configure_sessionmaker(graph): """ Create the SQLAlchemy session class. """ engine_routing_strategy = getattr(graph, graph.config.sessionmaker.engine_routing_strategy) if engine_routing_strategy.supports_multiple_binds: ScopedFactory.infect(graph, "postgres") class RoutingSession(...
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def to_file(self, destination, format='csv', csv_delimiter=',', csv_header=True): """Save the results to a local file in CSV format. Args: destination: path on the local filesystem for the saved results. format: the format to use for the exported data; currently only 'csv' is supported. csv_d...
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def list(cls, datacenter=None): """List virtual machine vlan (in the future it should also handle PaaS vlan).""" options = {} if datacenter: datacenter_id = int(Datacenter.usable_id(datacenter)) options['datacenter_id'] = datacenter_id return cls.call('h...
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def get_task_signature(cls, instance, serialized_instance, **kwargs): """ Delete each resource using specific executor. Convert executors to task and combine all deletion task into single sequential task. """ cleanup_tasks = [ ProjectResourceCleanupTask().si( ...
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def predict(self, features): """ Make prediction with feature matrix :param features: feature matrix with dimension (numSamples, numInputs) :return: predictions with dimension (numSamples, numOutputs) """ H = self.calculateHiddenLayerActivation(features) prediction = np.dot(H, self.beta) ...
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def sinus_values_by_hz(framerate, hz, max_value): """ Create sinus values with the given framerate and Hz. Note: We skip the first zero-crossing, so the values can be used directy in a loop. >>> values = sinus_values_by_hz(22050, 1200, 255) >>> len(values) # 22050 / 1200Hz = 18,375 18 >...
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def experiments_predictions_attachments_download(self, experiment_id, run_id, resource_id): """Download a data file that has been attached with a successful model run. Parameters ---------- experiment_id : string Unique experiment identifier model_id : string...
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def submit(self, txn, timeout=None): """ Submit a transaction. Processes multiple requests in a single transaction. A transaction increments the revision of the key-value store and generates events with the same revision for every completed request. It is not al...
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def utctimetuple(self): "Return UTC time tuple compatible with time.gmtime()." offset = self.utcoffset() if offset: self -= offset y, m, d = self.year, self.month, self.day hh, mm, ss = self.hour, self.minute, self.second return _build_struct_time(y, m, d, hh,...
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def _format_job_instance(job): ''' Format the job instance correctly ''' ret = {'Function': job.get('fun', 'unknown-function'), 'Arguments': salt.utils.json.loads(job.get('arg', '[]')), # unlikely but safeguard from invalid returns 'Target': job.get('tgt', 'unknown-targe...
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def clear_children(self): """Clears the children. raise: NoAccess - ``Metadata.isRequired()`` or ``Metadata.isReadOnly()`` is ``true`` *compliance: mandatory -- This method must be implemented.* """ if (self.get_children_metadata().is_read_only() or ...
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def generate_headerlet(outwcs,template,wcsname,outname=None): """ Create a headerlet based on the updated HSTWCS object This function uses 'template' as the basis for the headerlet. This file can either be the original wcspars['refimage'] or wcspars['coeffsfile'], in this order of preferenc...
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def get_event(self, client, check): """ Returns an event for a given client & check name. """ data = self._request('GET', '/events/{}/{}'.format(client, check)) return data.json()
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def show_options(self, key=""): """Returns a copy the options :class:`~pandas.DataFrame`. Called on jupyter notebook, it will print them in pretty :class:`~pandas.DataFrame` format. :param str key: First identifier of the option. If not provided, all options are returned. ...
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def organization(self, login): """Returns a Organization object for the login name :param str login: (required), login name of the org :returns: :class:`Organization <github3.orgs.Organization>` """ url = self._build_url('orgs', login) json = self._json(self._get(url), 2...
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def _decompose_pattern(self, pattern): """ Given a path pattern with format declaration, generates a four-tuple (glob_pattern, regexp pattern, fields, type map) """ sep = '~lancet~sep~' float_codes = ['e','E','f', 'F','g', 'G', 'n'] typecodes = dict([(k,float) for...
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def export_roles(path_prefix='/', region=None, key=None, keyid=None, profile=None): ''' Get all IAM role details. Produces results that can be used to create an sls file. CLI Example: salt-call boto_iam.export_roles --out=txt | sed "s/local: //" > iam_roles.sls ''' conn = _get_conn(reg...
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def __assert_false(returned): ''' Test if an boolean is False ''' result = "Pass" if isinstance(returned, str): try: returned = bool(returned) except ValueError: raise try: assert (returned is False), "{0...
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def _discover_mac(self): """ Discovers MAC address of device. Discovery is done by sending a UDP broadcast. All configured devices reply. The response contains the MAC address in both needed formats. Discovery of multiple switches must be done synchronously. :returns: ...
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def from_nuniq_interval_set(cls, nuniq_is): """ Convert an IntervalSet containing NUNIQ intervals to an IntervalSet representing HEALPix cells following the NESTED numbering scheme. Parameters ---------- nuniq_is : `IntervalSet` IntervalSet object storing HEA...
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def get_output_cache_key(self, placeholder_name, instance): """ .. versionadded:: 0.9 Return the default cache key which is used to store a rendered item. By default, this function generates the cache key using :func:`get_output_cache_base_key`. """ cachekey = self....
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def getScript(self, scriptname): ''' return the specified script if one exists (possibly inherited from a base target) ''' for t in self.hierarchy: s = t.getScript(scriptname) if s: return s return None
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def configure_sbi(self, sbi_config: dict, schema_path: str = None): """Add a new SBI to the database associated with this subarray. Args: sbi_config (dict): SBI configuration. schema_path (str, optional): Path to the SBI config schema. """ if not self.active: ...
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def helioZ(self,*args,**kwargs): """ NAME: helioZ PURPOSE: return Heliocentric Galactic rectangular z-coordinate (aka "Z") INPUT: t - (optional) time at which to get Z (can be Quantity) obs=[X,Y,Z] - (optional) position of observer ...
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def embed_code_links(app, exception): """Embed hyperlinks to documentation into example code""" if exception is not None: return # No need to waste time embedding hyperlinks when not running the examples # XXX: also at the time of writing this fixes make html-noplot # for some reason I don'...
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def reraise(self, cause_cls_finder=None): """Re-raise captured exception (possibly trying to recreate).""" if self._exc_info: six.reraise(*self._exc_info) else: # Attempt to regenerate the full chain (and then raise # from the root); without a traceback, oh we...
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def convert_text_to_rouge_format(text, title="dummy title"): """ Convert a text to a format ROUGE understands. The text is assumed to contain one sentence per line. text: The text to convert, containg one sentence per line. title: Optional title for the text. The titl...
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def load_fixture(fixture_file): """ Populate the database from a JSON file. Reads the JSON file FIXTURE_FILE and uses it to populate the database. Fuxture files should consist of a dictionary mapping database names to arrays of objects to store in those databases. """ utils.check_for_local_s...
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def get_variable_days(self, year): """ Add Late Summer holiday (First Monday of September) """ days = super(LateSummer, self).get_variable_days(year) days.append(( self.get_nth_weekday_in_month(year, 9, MON), "Late Summer Holiday" )) return...
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def get_layer(self): """ retrieve layer from DB """ if self.layer: return try: self.layer = Layer.objects.get(slug=self.kwargs['slug']) except Layer.DoesNotExist: raise Http404(_('Layer not found'))
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def from_total_moment_rate(cls, min_mag, b_val, char_mag, total_moment_rate, bin_width): """ Define Youngs and Coppersmith 1985 MFD by constraing cumulative a value and characteristic rate from total moment rate. The cumulative a value and characteristic ra...
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def _mean_prediction(self, lmda, Y, scores, h, t_params): """ Creates an h-step ahead mean prediction Parameters ---------- lmda : np.array The past predicted values Y : np.array The past data scores : np.array ...
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def wrap_method( func, default_retry=None, default_timeout=None, client_info=client_info.DEFAULT_CLIENT_INFO, ): """Wrap an RPC method with common behavior. This applies common error wrapping, retry, and timeout behavior a function. The wrapped function will take optional ``retry`` and ``ti...
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def _init_map(self, record_types=None, **kwargs): """Initialize form map""" osid_objects.OsidObjectForm._init_map(self, record_types=record_types) self._my_map['assignedObjectiveBankIds'] = [str(kwargs['objective_bank_id'])] self._my_map['courseIds'] = self._courses_default self....
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def compute_coeffs_discrete(xyz, mass, nmax, lmax, r_s, skip_odd=False, skip_even=False, skip_m=False, compute_var=False): """ Compute the expansion coefficients for representing the density distribution of input points as a basis function expansion. T...
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def _update_console(self, value=None): """ Update the progress bar to the given value (out of the total given to the constructor). """ if self._total == 0: frac = 1.0 else: frac = float(value) / float(self._total) file = self._file ...
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def setitem(self, key, value): # type: (Any, Any, Any) -> Any '''Takes an object, a key, and a value and produces a new object that is a copy of the original but with ``value`` as the new value of ``key``. The following equality should hold for your definition: .. code-block:: python ...
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def lowest(self, rtol=1.e-5, atol=1.e-8): """Return a sample set containing the lowest-energy samples. A sample is included if its energy is within tolerance of the lowest energy in the sample set. The following equation is used to determine if two values are equivalent: absolu...
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def _set_ldp_fec_vcs(self, v, load=False): """ Setter method for ldp_fec_vcs, mapped from YANG variable /mpls_state/ldp/fec/ldp_fec_vcs (container) If this variable is read-only (config: false) in the source YANG file, then _set_ldp_fec_vcs is considered as a private method. Backends looking to popu...
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def int(self, var, default=NOTSET): """ :rtype: int """ return self.get_value(var, cast=int, default=default)
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def add_iri_thermal_plasma(inst, glat_label='glat', glong_label='glong', alt_label='alt'): """ Uses IRI (International Reference Ionosphere) model to simulate an ionosphere. Uses pyglow module to run IRI. Configured to use actual solar parameters to run model. ...
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def init_app(self, app): """Initialize a :class:`~flask.Flask` application for use with this extension. """ self._jobs = [] if not hasattr(app, 'extensions'): app.extensions = {} app.extensions['restpoints'] = self app.restpoints_instance = self ...
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def resource_get(name): """used to fetch the resource path of the given name. <name> must match a name of defined resource in metadata.yaml returns either a path or False if resource not available """ if not name: return False cmd = ['resource-get', name] try: return subpr...
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def get_and_check_project(valid_vcs_rules, source_url): """Given vcs rules and a source_url, return the project. The project is in the path, but is the repo name. `releases/mozilla-beta` is the path; `mozilla-beta` is the project. Args: valid_vcs_rules (tuple of frozendicts): the valid vcs rul...
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def safe_input(prompt): """ Prompts user for input. Correctly handles prompt message encoding. """ if sys.version_info < (3,0): if isinstance(prompt, compat.text_type): # Python 2.x: unicode → bytes encoding = locale.getpreferredencoding() or 'utf-8' prompt ...
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def ws025(self, value=None): """ Corresponds to IDD Field `ws025` Wind speed corresponding to 2.5% annual cumulative frequency of occurrence Args: value (float): value for IDD Field `ws025` Unit: m/s if `value` is None it will not be checked against ...
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def num_samples(input_filepath): ''' Show number of samples (0 if unavailable). Parameters ---------- input_filepath : str Path to audio file. Returns ------- n_samples : int total number of samples in audio file. Returns 0 if empty or unavailable ''' va...
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def selectisnot(table, field, value, complement=False): """Select rows where the given field `is not` the given value.""" return selectop(table, field, value, operator.is_not, complement=complement)
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def _get_catalysts_in_reaction(reaction: Reaction) -> Set[BaseAbundance]: """Return nodes that are both in reactants and reactions in a reaction.""" return { reactant for reactant in reaction.reactants if reactant in reaction.products }
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def _to_fields(self, *values): """ Take a list of values, which must be primary keys of the model linked to the related collection, and return a list of related fields. """ result = [] for related_instance in values: if not isinstance(related_instance, model.R...
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def generate_basic(self): """RFC 2617.""" from base64 import b64encode if not self.basic_auth: creds = self.username + ':' + self.password self.basic_auth = 'Basic ' self.basic_auth += b64encode(creds.encode('UTF-8')).decode('UTF-8') return self.basic_...
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def create_payload(self): """Create the payload doc. Returns: str """ doc = etree.fromstring(self.message) self.payload = etree.tostring(doc, encoding="utf-8") self.payload = urlsafe_b64encode(self.payload).decode("ascii") return self.payload
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