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def defaults_scope(**kwargs): """Creates a scope for the defaults that are used in a `with` block. Note: `defaults_scope` supports nesting where later defaults can be overridden. Also, an explicitly given keyword argument on a method always takes precedence. In addition to setting defaults for some methods,...
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def extract_all(self, directory=".", members=None): """Extract all member from the archive to the specified working directory. """ if self.handle: self.handle.extractall(path=directory, members=members)
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def merged_pex(cls, path, pex_info, interpreter, pexes, interpeter_constraints=None): """Yields a pex builder at path with the given pexes already merged. :rtype: :class:`pex.pex_builder.PEXBuilder` """ pex_paths = [pex.path() for pex in pexes if pex] if pex_paths: pex_info = pex_info.copy() ...
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def module_broadcast(m, broadcast_fn, *args, **kwargs): """ Call given function in all submodules with given parameters """ apply_leaf(m, lambda x: module_apply_broadcast(x, broadcast_fn, args, kwargs))
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def trackjobs(func, results, spacer): """ Blocks and prints progress for just the func being requested from a list of submitted engine jobs. Returns whether any of the jobs failed. func = str results = dict of asyncs """ ## TODO: try to insert a better way to break on KBD here. LOGGER....
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def create(gandi, fqdn, name, type, value, ttl): """Create new record entry for a domain. multiple value parameters can be provided. """ domains = gandi.dns.list() domains = [domain['fqdn'] for domain in domains] if fqdn not in domains: gandi.echo('Sorry domain %s does not exist' % fqdn...
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def shape_list(x): """Return list of dims, statically where possible.""" x = tf.convert_to_tensor(x) # If unknown rank, return dynamic shape if x.get_shape().dims is None: return tf.shape(x) static = x.get_shape().as_list() shape = tf.shape(x) ret = [] for i, dim in enumerate(static): if dim ...
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def render(source, target, context, owner='root', group='root', perms=0o444, templates_dir=None, encoding='UTF-8', template_loader=None, config_template=None): """ Render a template. The `source` path, if not absolute, is relative to the `templates_dir`. The `target` path should ...
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def square(left, top, length, filled=False, thickness=1): """Returns a generator that produces (x, y) tuples for a square. This function is an alias for the rectangle() function, with `length` passed for both the `width` and `height` parameters. The `left` and `top` arguments are the x and y coordinate...
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def dashboard(request): """Shows the latest results for each source""" sources = (models.Source.objects.all().prefetch_related('metric_set') .order_by('name')) metrics = SortedDict([(src, src.metric_set.all()) for src in sources]) no_source_metrics = models.Metr...
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def diffusion_stencil_2d(epsilon=1.0, theta=0.0, type='FE'): """Rotated Anisotropic diffusion in 2d of the form. -div Q A Q^T grad u Q = [cos(theta) -sin(theta)] [sin(theta) cos(theta)] A = [1 0 ] [0 eps ] Parameters ---------- epsilon : fl...
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def view_rest_retry(self, url=None): """ View current rest retry settings in the `requests.Session()` object **Parameters:** - **url:** URL to use to determine retry methods for. Defaults to 'https://' **Returns:** Dict, Key header, value is header value. """ ...
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def _get_options(ret=None): ''' Get the redis options from salt. ''' attrs = {'host': 'host', 'port': 'port', 'unix_socket_path': 'unix_socket_path', 'db': 'db', 'password': 'password', 'cluster_mode': 'cluster_mode', 'startup...
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def remove(image): """Remove an image to the GUI img library.""" path = os.path.join(IMG_DIR, image) if os.path.isfile(path): os.remove(path)
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def traceplot(trace: sample_types, labels: List[Union[str, Tuple[str, str]]] = None, ax: Any = None, x0: int = 0) -> Any: """ Plot samples values. :param trace: result of MCMC run :param labels: labels of vertices to be plotted. if None, all vertices are plotted. :param ax: Matplotli...
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def redraw_tiles(self, surface): """ redraw the visible portion of the buffer -- it is slow. """ # TODO/BUG: Redraw animated tiles correctly. They are getting reset here logger.warning('pyscroll buffer redraw') self._clear_surface(self._buffer) self._tile_queue = self.da...
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def TableArgsMeta(table_args): '''Declarative metaclass automatically adding (merging) __table_args__ to mapped classes. Example: Meta = TableArgsMeta({ 'mysql_engine': 'InnoDB', 'mysql_default charset': 'utf8', } Base = declarative_base(name='Base', metaclass=M...
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def import_(module_name, name): """Imports an object by a relative module path:: Profiler = import_('profiling.profiler', 'Profiler') """ module = importlib.import_module(module_name, __package__) return getattr(module, name)
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def get_listing_calendar(self, listing_id, starting_date=datetime.datetime.now(), calendar_months=6): """ Get host availability calendar for a given listing """ params = { '_format': 'host_calendar_detailed' } starting_date_str = starting_date.strftime("%Y-%m...
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def compact_name(self, hashsize=6): """Compact representation of all simulation parameters """ # this can be made more robust for ID > 9 (double digit) s = self.compact_name_core(hashsize, t_max=True) s += "_ID%d-%d" % (self.ID, self.EID) return s
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def random_model(ctx, model_class_name): """ Get a random model identifier by class name. For example:: # db/fixtures/Category.yml {% for i in range(0, 10) %} category{{ i }}: name: {{ faker.name() }} {% endfor %} # db/fixtures/Post.yml a_blog_post: ...
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def get(self, media_id): """ 获取永久素材 详情请参考 http://mp.weixin.qq.com/wiki/4/b3546879f07623cb30df9ca0e420a5d0.html :param media_id: 素材的 media_id :return: 图文素材返回图文列表,其它类型为素材的内容 """ def _processor(res): if isinstance(res, dict): if '...
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def construct_operation_validators(api_path, path_definition, operation_definition, context): """ - consumes (did the request conform to the content types this api consumes) - produces (did the response conform to the content types this endpoint produces) - parameters (did the parameters of this request...
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def get_function_help(function: str, bel_spec: BELSpec): """Get function_help given function name This will get the function summary template (argument summary in signature) and the argument help listing. """ function_long = bel_spec["functions"]["to_long"].get(function) function_help = [] ...
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def index_open(self, index): ''' Opens the speicified index. http://www.elasticsearch.org/guide/reference/api/admin-indices-open-close.html > ElasticSearch().index_open('my_index') ''' request = self.session url = 'http://%s:%s/%s/_open' % (self.host, self.port, ...
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def write_file(self, molecule, inpfile): """ Write an ADF input file. Parameters ---------- molecule : Molecule The molecule for this task. inpfile : str The name where the input file will be saved. """ mol_blocks = [] at...
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def parseExtensionArgs(self, ax_args): """Given attribute exchange arguments, populate this FetchRequest. @param ax_args: Attribute Exchange arguments from the request. As returned from L{Message.getArgs<openid.message.Message.getArgs>}. @type ax_args: dict @raises KeyError...
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def delete(self, obj): """ Returns object: full copy of new obj """ full = deepcopy(obj) frag = full parts, last = self.parts[:-1], self.parts[-1] for part in parts: if isinstance(frag, dict): frag = frag[part] e...
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def solve( solver, mzn, *dzn_files, data=None, include=None, stdlib_dir=None, globals_dir=None, allow_multiple_assignments=False, output_mode='item', timeout=None, two_pass=None, pre_passes=None, output_objective=False, non_unique=False, all_solutions=False, num_solutions=None, free_search=False, pa...
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def interactive(renderer): """ Parse user input, dump to stdout, rinse and repeat. Python REPL style. """ _import_readline() _print_heading(renderer) contents = [] more = False while True: try: prompt, more = ('... ', True) if more else ('>>> ', True) ...
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def _check_for_duplicates(xs, attr, check_fn=None): """Identify and raise errors on duplicate items. """ dups = [] for key, vals in itertools.groupby(x[attr] for x in xs): if len(list(vals)) > 1: dups.append(key) if len(dups) > 0: psamples = [] for x in xs: ...
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def verify(institute_id, case_name, variant_id, variant_category, order): """Start procedure to validate variant using other techniques.""" institute_obj, case_obj = institute_and_case(store, institute_id, case_name) variant_obj = store.variant(variant_id) user_obj = store.user(current_user.email) ...
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def download_url(job, url, work_dir='.', name=None, s3_key_path=None, cghub_key_path=None): """ Downloads URL, can pass in file://, http://, s3://, or ftp://, gnos://cghub/analysisID, or gnos:///analysisID If downloading S3 URLs, the S3AM binary must be on the PATH :param toil.job.Job job: Toil job tha...
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def set(self, field, clusters, value, add_to_stack=True): """Set the value of one of several clusters.""" # Add the field if it doesn't exist. if field not in self._fields: self.add_field(field) assert field in self._fields clusters = _as_list(clusters) for c...
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def hue(p): """ Returns the saturation of a pixel. Gray pixels have saturation 0. :param p: A tuple of (R,G,B) values :return: A saturation value between 0 and 360 """ min_c = min(p) max_c = max(p) d = float(max_c - min_c) if d == 0: return 0 if max_c == p[0]: ...
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def set_query_on_table_metaclass(model: object, session: Session): """ Ensures that the given database model (`DeclarativeMeta`) has a `query` property through which the user can easily query the corresponding database table. Database object models derived from Flask-SQLAlchemy's `...
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def rename_fmapm(bids_base, basename): ''' Rename magnitude fieldmap file to BIDS specification ''' files = dict() for ext in ['nii.gz', 'json']: for echo in [1, 2]: fname = '{0}_e{1}.{2}'.format(basename, echo, ext) src = os.path.join(bids_base, 'fmap', fname) ...
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def do_execute_direct(self, code: str, silent: bool = False) -> [str, dict]: """ This is the main method that takes code from the Jupyter cell and submits it to the SAS server :param code: code from the cell :param silent: :return: str with either the log or list """ ...
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def t_fold_end(self, t): r'\n+\ *' column = find_column(t) indent = self.indent_stack[-1] if column < indent: rollback_lexpos(t) if column <= indent: t.lexer.pop_state() t.type = 'B_FOLD_END' if column > indent: t.type = 'SC...
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def role_assignment_path(cls, project, incident, role_assignment): """Return a fully-qualified role_assignment string.""" return google.api_core.path_template.expand( "projects/{project}/incidents/{incident}/roleAssignments/{role_assignment}", project=project, inciden...
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def parse_info(wininfo_name, egginfo_name): """Extract metadata from filenames. Extracts the 4 metadataitems needed (name, version, pyversion, arch) from the installer filename and the name of the egg-info directory embedded in the zipfile (if any). The egginfo filename has the format:: ...
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def remote_file_size(self, remote_cmd="", remote_file=None): """Get the file size of the remote file.""" if remote_file is None: if self.direction == "put": remote_file = self.dest_file elif self.direction == "get": remote_file = self.source_file ...
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def shift_right(self, times=1): """ Finds Location shifted right by 1 :rtype: Location """ try: return Location(self._rank, self._file + times) except IndexError as e: raise IndexError(e)
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def set_user_name(self, uid, name): """Set user name :param uid: user number [1:16] :param name: username (limit of 16bytes) """ data = [uid] if len(name) > 16: raise Exception('name must be less than or = 16 chars') name = name.ljust(16, "\x00") ...
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def _ParsePathSpecification( self, knowledge_base, searcher, file_system, path_specification, path_separator): """Parses a file system for a preprocessing attribute. Args: knowledge_base (KnowledgeBase): to fill with preprocessing information. searcher (dfvfs.FileSystemSearcher): file s...
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def original(self): """(:class:`Image`) The original image. It could be :const:`None` if there are no stored images yet. """ images = self.query._original_images(**self.identity_map) if images: return images[0]
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def get_xyz(self, list_of_names=None): """Get xyz coordinates for these electrodes Parameters ---------- list_of_names : list of str list of electrode names to use Returns ------- list of tuples of 3 floats (x, y, z) list of xyz coordinat...
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def save_state(self): """Store the options into the user's stored session info. .. versionadded: 4.3.0 """ settings = QtCore.QSettings() settings.setValue( 'inasafe/useDefaultTemplates', self.default_template_radio.isChecked()) settings.setValue( ...
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def get_part_filenames(num_parts=None, start_num=0): """Get numbered PART.html filenames.""" if num_parts is None: num_parts = get_num_part_files() return ['PART{0}.html'.format(i) for i in range(start_num+1, num_parts+1)]
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def from_xx(cls, xx): """ Create a new Language instance from a ISO639 string :param xx: ISO639 as string :return: Language instance with instance.xx() == xx if xx is valid else instance of UnknownLanguage """ xx = str(xx).lower() if xx is 'unknown': r...
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def from_lab(l, a, b, alpha=1.0, wref=_DEFAULT_WREF): """Create a new instance based on the specifed CIE-LAB values. Parameters: :l: The L component [0...100] :a: The a component [-1...1] :b: The a component [-1...1] :alpha: The color transparency [0...1]...
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def is_filter_selected(self, selection_id, value): """ Compares whether the 'selection_id' parameter value saved in the cookie is the same value as the "value" parameter. :param selection_id: a string as a dashboard_cookie key. :param value: The value to compare against the valu...
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def sonify_clicks(audio, clicks, out_file, fs, offset=0): """Sonifies the estimated times into the output file. Parameters ---------- audio: np.array Audio samples of the input track. clicks: np.array Click positions in seconds. out_file: str Path to the output file. ...
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def stop(name, call=None): ''' Stop a node ''' if call != 'action': raise SaltCloudSystemExit( 'The stop action must be called with -a or --action.' ) log.info('Stopping node %s', name) instance_id = _get_node(name)['instanceId'] __utils__['cloud.fire_event']( ...
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def apply_T6(word): '''If a VVV-sequence contains a long vowel, there is a syllable boundary between it and the third vowel, e.g. [kor.ke.aa], [yh.ti.öön], [ruu.an], [mää.yt.te].''' WORD = word offset = 0 for vvv in vvv_sequences(WORD): seq = vvv.group(2) j = 2 if is_long(seq[:2...
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def get_anki_phrases_english(limit=None): """ Return all the English phrases in the Anki translation flashcards >>> len(get_anki_phrases_english(limit=100)) > 700 True """ texts = set() for lang in ANKI_LANGUAGES: df = get_data(lang) phrases = df.eng.str.strip().values ...
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def diff(args): """ %prog diff afasta bfasta print out whether the records in two fasta files are the same """ from jcvi.utils.table import banner p = OptionParser(diff.__doc__) p.add_option("--ignore_case", default=False, action="store_true", help="ignore case when comparing s...
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def check_pointers(parser, codedir=None, mfilter=None, recursive=False): """Checks the modules in the specified code parser to see if they have common, but subtle, pointer bugs in: 1. subroutines with a parameter of intent(out) and user-derived type must* set *all* members of that parameter or they w...
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def parse_url_or_log(url, encoding='utf-8'): '''Parse and return a URLInfo. This function logs a warning if the URL cannot be parsed and returns None. ''' try: url_info = URLInfo.parse(url, encoding=encoding) except ValueError as error: _logger.warning(__( _('Unable ...
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def deleteICM(uuid: str): """ Deletes an ICM""" _metadata = ICMMetadata.query.filter_by(id=uuid).first() db.session.delete(_metadata) db.session.commit() return ("", 204)
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def get_effective_course_roles_in_account(self, account_id): """ List all course roles available to an account, for the passed Canvas account ID, including course roles inherited from parent accounts. """ course_roles = [] params = {"show_inherited": "1"} for role...
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def _extract_image(self, raw_image): """ Extract unequally-sized image bands. Parameters ---------- raw_image : reference to openjpeg ImageType instance The image structure initialized with image characteristics. Returns ------- list or ndarr...
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def pods(namespace='default', **kwargs): ''' Return a list of kubernetes pods defined in the namespace CLI Examples:: salt '*' kubernetes.pods salt '*' kubernetes.pods namespace=default ''' cfg = _setup_conn(**kwargs) try: api_instance = kubernetes.client.CoreV1Api() ...
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def somethingFound(self,data,mode="phonefy"): ''' Verifying if something was found. Note that this method needed to be rewritten as in Spoj we need to look for a text which APPEARS instead of looking for a text that does NOT appear. :param data: Data where the self.notFo...
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def is_profile_in_legacy_format(profile): """ Is a given profile JSON object in legacy format? """ if isinstance(profile, dict): pass elif isinstance(profile, (str, unicode)): try: profile = json.loads(profile) except ValueError: return False else:...
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def flatpages_link_list(request): """ Returns a HttpResponse whose content is a Javascript file representing a list of links to flatpages. """ from django.contrib.flatpages.models import FlatPage link_list = [(page.title, page.url) for page in FlatPage.objects.all()] return render_to_link_li...
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def set_effect(self, effect_name: str): """Sets the color change program of the light.""" try: effect_index = self._light_effect_list.index(effect_name) except ValueError: LOG.error("Trying to set unknown light effect") return False return self.setVal...
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def _get_genesplicer(data): """ This is a plugin for the Ensembl Variant Effect Predictor (VEP) that runs GeneSplicer (https://ccb.jhu.edu/software/genesplicer/) to get splice site predictions. https://github.com/Ensembl/VEP_plugins/blob/master/GeneSplicer.pm """ genesplicer_exec = os.path.real...
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def get_service(name): """ Get the service descriptor for the given service name. @see: L{start_service}, L{stop_service}, L{pause_service}, L{resume_service} @type name: str @param name: Service unique name. You can get this value from the C{ServiceNam...
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def stored_messages_archive(context, num_elements=10): """ Renders a list of archived messages for the current user """ if "user" in context: user = context["user"] if user.is_authenticated(): qs = MessageArchive.objects.select_related("message").filter(user=user) ...
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def _do_analysis_cross_validation(self): """ Find the best model (fit) based on cross-valiation (leave one out) """ assert len(self.df) < 15, "Cross-validation is not implemented if your sample contains more than 15 datapoints" # initialization: first model is the mean, but com...
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def scrape_all_files(self): """ Generator that yields one by one the return value for self.read_dcm for each file within this set """ try: for dcmf in self.items: yield self.read_dcm(dcmf) except IOError as ioe: raise IOError('Error...
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def eparOptionFactory(master, statusBar, param, defaultParam, doScroll, fieldWidths, plugIn=None, editedCallbackObj=None, helpCallbackObj=None, mainGuiObj=None, defaultsVerb="Default", bg=None, indent=False, fl...
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def ReleaseProcessedFlow(self, flow_obj, cursor=None): """Releases a flow that the worker was processing to the database.""" update_query = """ UPDATE flows LEFT OUTER JOIN ( SELECT client_id, flow_id, needs_processing FROM flow_requests WHERE client_id = %(client_id)s AND ...
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def _ensure_authed(self, ptype, message): """ Checks message type against current auth state. If server mode, and auth has not succeeded, and the message is of a post-auth type (channel open or global request) an appropriate error response Message is crafted and returned to call...
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def get_default_env(self): """ Vanilla Ansible local commands execute with an environment inherited from WorkerProcess, we must emulate that. """ return dict_diff( old=ansible_mitogen.process.MuxProcess.original_env, new=os.environ, )
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def _get_path_to_jar(cls, coursier_cache_path, pants_jar_path_base, jar_path): """ Create the path to the jar that will live in .pants.d :param coursier_cache_path: coursier cache location :param pants_jar_path_base: location under pants workdir to store the hardlink to the coursier cache :para...
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def convertVectorColumnsToML(dataset, *cols): """ Converts vector columns in an input DataFrame from the :py:class:`pyspark.mllib.linalg.Vector` type to the new :py:class:`pyspark.ml.linalg.Vector` type under the `spark.ml` package. :param dataset: input datase...
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def function_call_action(self, text, loc, fun): """Code executed after recognising the whole function call""" exshared.setpos(loc, text) if DEBUG > 0: print("FUN_CALL:",fun) if DEBUG == 2: self.symtab.display() if DEBUG > 2: return #check number...
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def get_cluster_config( cluster_type, cluster_name=None, kafka_topology_base_path=None, ): """Return the cluster configuration. Use the local cluster if cluster_name is not specified. :param cluster_type: the type of the cluster :type cluster_type: string :param cluster_name: the name o...
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def fetch_sender_txs(self): """ Fetch all sender txs via JSON-RPC, and merge them into our block data. Try backing off (up to 5 times) if we fail to fetch transactions via JSONRPC Return True on success Raise on error """ # fetch remaini...
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def field2pattern(self, field, **kwargs): """Return the dictionary of OpenAPI field attributes for a set of :class:`Range <marshmallow.validators.Regexp>` validators. :param Field field: A marshmallow field. :rtype: dict """ regex_validators = ( v ...
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def get_operations(self, indices: Sequence[LogicalIndex], qubits: Sequence[ops.Qid] ) -> ops.OP_TREE: """Gets the logical operations to apply to qubits."""
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def find_loader(self, fullname): """Try to find a loader for the specified module, or the namespace package portions. Returns (loader, list-of-portions). This method is deprecated. Use find_spec() instead. """ spec = self.find_spec(fullname) if spec is None: ...
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def _make_tensor_fixed(name, data_type, dims, vals, raw=False): ''' Make a TensorProto with specified arguments. If raw is False, this function will choose the corresponding proto field to store the values based on data_type. If raw is True, use "raw_data" proto field to store the values, and value...
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def add_text_content_type(application, content_type, default_encoding, dumps, loads): """ Add handler for a text content type. :param tornado.web.Application application: the application to modify :param str content_type: the content type to add :param str default_encoding...
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def reverse_lookup(self, state, path): """ Returns a chrome URL for a given path, given the current package depth in an error bundle. State may either be an error bundle or the actual package stack. """ # Make sure the path starts with a forward slash. if not pa...
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def order_delete(backend, kitchen, order_id): """ Delete one order or all orders in a kitchen """ use_kitchen = Backend.get_kitchen_name_soft(kitchen) print use_kitchen if use_kitchen is None and order_id is None: raise click.ClickException('You must specify either a kitchen or an order_...
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def get_im(self, force_update=False): """Get the influence map for the model, generating it if necessary. Parameters ---------- force_update : bool Whether to generate the influence map when the function is called. If False, returns the previously generated influ...
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def update_ticket(self, tid, tickets=None): """If the customer should be granted an electronic ticket as a result of a successful payment, the merchant may (at any time) PUT ticket information to this endpoint. There is an ordered list of tickets; the merchant may PUT several times to up...
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def search(query='', keywords=[], registry=None): ''' generator of objects returned by the search endpoint (both modules and targets). Query is a full-text search (description, name, keywords), keywords search only the module/target description keywords lists. If both parameters ar...
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def _connect(self): """ Returns an aggregator connection. """ with self._lock: if self._aggregator: try: return self._pool_connect(self._aggregator) except PoolConnectionException: self._aggregator = None if...
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def num_columns(self): """Number of columns displayed.""" if self.term.is_a_tty: return self.term.width // self.hint_width return 1
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def create(self, username, **kwargs): """ Create a user in Keycloak http://www.keycloak.org/docs-api/3.4/rest-api/index.html#_users_resource :param str username: :param object credentials: (optional) :param str first_name: (optional) :param str last_name: (optio...
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def storage_accounts(self): """Instance depends on the API version: * 2015-06-15: :class:`StorageAccountsOperations<azure.mgmt.storage.v2015_06_15.operations.StorageAccountsOperations>` * 2016-01-01: :class:`StorageAccountsOperations<azure.mgmt.storage.v2016_01_01.operations.StorageAccoun...
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def new_config_event(self): """Called by the event loop when new config is available. """ try: self.on_set_config() except Exception as ex: self.logger.exception(ex) raise StopIteration()
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def visit_DictComp(self, node: ast.DictComp) -> Any: """Compile the dictionary comprehension as a function and call it.""" result = self._execute_comprehension(node=node) for generator in node.generators: self.visit(generator.iter) self.recomputed_values[node] = result ...
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def json_2_company(json_obj): """ transform JSON obj coming from Ariane to ariane_clip3 object :param json_obj: the JSON obj coming from Ariane :return: ariane_clip3 Company object """ LOGGER.debug("Company.json_2_company") return Company(cmpid=json_obj['companyID...
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def validate_properties(self): """Validates that the required properties for this Resource have been populated, and that all properties have valid values. :returns: True if all properties are valid :rtype: bool :raises TypeError: if any properties are invalid """ ...
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def execute(self): """ Execute all of the saved commands and return results. """ try: for key, value in self._watched_keys.items(): if self.mock_redis.redis.get(self.mock_redis._encode(key)) != value: raise WatchError("Watched variable chan...
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