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def add_to(self, parent, additions): "Modify parent to include all elements in additions" for x in additions: if x not in parent: parent.append(x) self.changed()
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def split_tracks(lat,lon,*args): '''assumes eastward motion''' tracks = [] lt,ln = [lat[0]],[lon[0]] zz = [[z[0]] for z in args] for i in range(1,len(lon)): lt.append(lat[i]) for z,a in zip(zz,args): z.append(a[i]) d1 = abs(lon[...
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def get_validation_errors(data, schema=None): """Validation errors for a given record. Args: data (dict): record to validate. schema (Union[dict, str]): schema to validate against. If it is a string, it is intepreted as the name of the schema to load (e.g. ``authors`` or...
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def _call(self, x, out=None): """Return ``self(x[, out])``.""" # TODO: pass reasonable options on to the interpolator def nearest(arg, out=None): """Interpolating function with vectorization.""" if is_valid_input_meshgrid(arg, self.grid.ndim): input_type =...
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def time_correlation_direct_by_mtx_vec_prod(P, mu, obs1, obs2=None, time=1, start_values=None, return_P_k_obs=False): r"""Compute time-correlation of obs1, or time-cross-correlation with obs2. The time-correlation at time=k is computed by the matrix-vector expression: cor(k) = obs1' diag(pi) P^k obs2 ...
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def draw(args): """ %prog draw --input newicktrees [options] Draw phylogenetic trees into single or combined plots. Input trees should be one of the following: 1. single Newick format tree file 2. a dir containing *ONLY* the tree files to be drawn Newick format: http://evolution.gene...
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def _getEventsOnDay(self, request, day): """Return all the events in this site for a given day.""" home = request.site.root_page return getAllEventsByDay(request, day, day, home=home)[0]
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def distances_within(coords_a, coords_b, cutoff, periodic=False, method="simple"): """Calculate distances between the array of coordinates *coord_a* and *coord_b* within a certain cutoff. This function is a wrapper around different routines and data structures for distance sear...
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def color(cls, value): """task value/score color""" index = bisect(cls.breakpoints, value) return colors.fg(cls.colors_[index])
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def simplex_select_entering_arc(self, t, pivot): ''' API: simplex_select_entering_arc(self, t, pivot) Description: Decides and returns entering arc using pivot rule. Input: t: current spanning tree solution pivot: May be one of the followin...
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def create(domain_name, years, **kwargs): ''' Try to register the specified domain name domain_name The domain name to be registered years Number of years to register Returns the following information: - Whether or not the domain was renewed successfully - Whether or not ...
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def run_hooks(self, name, event=None, context=None): """ Runs plugin hooks for each registered plugin. """ hooks = { "pre:setup": lambda p: p.pre_setup(self), "post:setup": lambda p: p.post_setup(self), "pre:invoke": lambda p: p.pre_invoke(event, conte...
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def draw_imf_samples(**kwargs): ''' Draw samples for power-law model Parameters ---------- **kwargs: string Keyword arguments as model parameters and number of samples Returns ------- array The first mass array The second mas...
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def incr(self, name, amount=1): """ Increase the value at key ``name`` by ``amount``. If no key exists, the value will be initialized as ``amount`` . Like **Redis.INCR** :param string name: the key name :param int amount: increments :return: the integer value at...
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def ssh_invite(ctx, code_length, user, **kwargs): """ Add a public-key to a ~/.ssh/authorized_keys file """ for name, value in kwargs.items(): setattr(ctx.obj, name, value) from . import cmd_ssh ctx.obj.code_length = code_length ctx.obj.ssh_user = user return go(cmd_ssh.invite, c...
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def add_path(self, w, h): """Reference to `a:custGeom` descendant or |None| if not present.""" custGeom = self.spPr.custGeom if custGeom is None: raise ValueError('shape must be freeform') pathLst = custGeom.get_or_add_pathLst() return pathLst.add_path(w=w, h=h)
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def _embed(x, order=3, delay=1): """Time-delay embedding. Parameters ---------- x : 1d-array, shape (n_times) Time series order : int Embedding dimension (order) delay : int Delay. Returns ------- embedded : ndarray, shape (n_times - (order - 1) * delay, ord...
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def text_filter_changed(self, text): """ Called to handle changes to the text filter. :param text: The text for the filter. """ text = text.strip() if text else None if text is not None: self.__text_filter = ListModel.TextFilter("text_for_filter", te...
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def __ds(self): """ Get the I{default} service if defined in the I{options}. @return: A L{PortSelector} for the I{default} service. @rtype: L{PortSelector}. """ ds = self.__client.options.service if ds is not None: return self.__find(ds)
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def update_if_absent(self, **kwargs): """Update the settings when the target fields are None. Args: kwargs: The keyword arguments to set corresponding fields. """ for arg in kwargs: if hasattr(self, arg): if getattr(self, arg) is None: ...
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def pitch_tuning(frequencies, resolution=0.01, bins_per_octave=12): '''Given a collection of pitches, estimate its tuning offset (in fractions of a bin) relative to A440=440.0Hz. Parameters ---------- frequencies : array-like, float A collection of frequencies detected in the signal. ...
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def open(self): """Open the subtitle file into an Aeidon project.""" try: self.project.open_main(self.filename) except UnicodeDecodeError: with open(self.filename, 'rb') as openfile: encoding = get_encoding(openfile.read()) try: ...
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def _process_group(input_group, required_group, groupname, append_subgroups=None): """ Process one group from the input yaml. Ensure it has the required entries. If there is a subgroup that should be processed and then appended to the rest of the subgroups in that group, handle it accordingly. :p...
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def service_info(self, name): """Pull descriptive info of a service by name. Information returned includes the service's user friendly name and whether it was preregistered or added dynamically. Returns: dict: A dictionary of service information with the following keys ...
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def DeriveDataRegex(fieldName, db, deriveInput, overwrite, fieldVal, histObj={}, blankIfNoMatch=False): """ Return a new field value based on match (of another field) against regex queried from MongoDB :param string fieldName: Field name to query against :param MongoClient db: M...
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def get_reference_fields(self, exclude_models=None): """ Get all Django model fields which reference the Item model. """ if exclude_models is None: exclude_models = [] result = [] for django_model in django.apps.apps.get_models(): if any([issubclas...
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def upload(name): '''Handle upload on POST if authorized.''' storage = fs.by_name(name) return jsonify(success=True, **handle_upload(storage))
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def move(self, path_list, dest, **kwargs): """ 移动文件或文件夹 :param path_list: 在百度盘上要移动的源文件path :type path_list: list :param dest: 要移动到的目录 :type dest: str """ def __path(path): if path.endswith('/'): return path.split('/')[-2] ...
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def json_2_nic(json_obj): """ transform JSON obj coming from Ariane to ariane_clip3 object :param json_obj: the JSON obj coming from Ariane :return: ariane_clip3 NIC object """ LOGGER.debug("NIC.json_2_nic") return NIC(nic_id=json_obj['nicID'], ...
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def obtain_token(self): """ Try to obtain token from all end-points that were ever used to serve the token. If the request returns 404 NOT FOUND, retry with older version of the URL. """ token_end_points = ('token/obtain', 'obtain-token', ...
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def rate_limits(self): """Returns a list of rate limit details.""" if not self._rate_limits: self._rate_limits = utilities.get_rate_limits(self.response) return self._rate_limits
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def plateid6(self, filetype, **kwargs): """Print plate ID, accounting for 5-6 digit plate IDs. Parameters ---------- filetype : str File type parameter. plateid : int or str Plate ID number. Will be converted to int internally. Returns -...
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def jp_compose(s, base=None): """ append/encode a string to json-pointer """ if s == None: return base ss = [s] if isinstance(s, six.string_types) else s ss = [s.replace('~', '~0').replace('/', '~1') for s in ss] if base: ss.insert(0, base) return '/'.join(ss)
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def is_lop(ch,block_op_pairs_dict=get_block_op_pairs('{}[]()')): ''' # is_lop('{',block_op_pairs_dict) # is_lop('[',block_op_pairs_dict) # is_lop('}',block_op_pairs_dict) # is_lop(']',block_op_pairs_dict) # is_lop('a',block_op_pairs_dict) ''' for i in range(1,block_op_pairs_dict.__len__(...
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def set_modulations(self, dimension, phonon_modes, delta_q=None, derivative_order=None, nac_q_direction=None): """Generate atomic displacements of phonon modes. The design of this fea...
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def version_msg(): """Return the Cookiecutter version, location and Python powering it.""" python_version = sys.version[:3] location = os.path.dirname(os.path.dirname(os.path.abspath(__file__))) message = u'Cookiecutter %(version)s from {} (Python {})' return message.format(location, python_version)
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def to_unit_cell(self, in_place=False): """ Move frac coords to within the unit cell cell. """ frac_coords = np.mod(self.frac_coords, 1) if in_place: self.frac_coords = frac_coords else: return PeriodicSite(self.species, frac_coords, self.lattice, ...
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def add_resource_factory(self, factory_callback: factory_callback_type, types: Union[type, Sequence[Type]], name: str = 'default', context_attr: str = None) -> None: """ Add a resource factory to this context. This will cause a ``resourc...
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def _load(self): """ Execute the logic behind the merging. """ if "PYFUNCEBLE_AUTO_CONFIGURATION" not in PyFunceble.environ: # The auto configuration environment variable is not set. while True: # We infinitly loop until we get a reponse which is...
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def _download_rtd_zip(rtd_version=None, **kwargs): """ Download and extract HTML ZIP from RTD to installed doc data path. Download is skipped if content already exists. Parameters ---------- rtd_version : str or `None` RTD version to download; e.g., "latest", "stable", or "v2.6.0". ...
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def switch(self, time=None): """Obtain switch parameter, ie number of times the stage shifts.""" stag_to_int = {'NREM1': 1, 'NREM2': 2, 'NREM3': 3, 'REM': 5, 'Wake': 0} hypno = [stag_to_int[x['stage']] for x in self.get_epochs(time=time) \ if x['stage'] in stag_to_int.keys()] ...
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def load_file(self, filename): """Load file into treeview""" self.counter.clear() # python2 issues try: etree = ET.parse(filename) except ET.ParseError: parser = ET.XMLParser(encoding='UTF-8') etree = ET.parse(filename, parser) eroot =...
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def cmd_slow_requests(self): """List all requests that took a certain amount of time to be processed. .. warning:: By now hardcoded to 1 second (1000 milliseconds), improve the command line interface to allow to send parameters to each command or globally. ...
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def tf_initialize(self, x_init, b): """ Initialization step preparing the arguments for the first iteration of the loop body: $x_0, 0, p_0, r_0, r_0^2$. Args: x_init: Initial solution guess $x_0$, zero vector if None. b: The right-hand side $b$ of the system of...
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def fmt_sia(sia, ces=True): """Format a |SystemIrreducibilityAnalysis|.""" if ces: body = ( '{ces}' '{partitioned_ces}'.format( ces=fmt_ces( sia.ces, 'Cause-effect structure'), partitioned_ces=fmt_ces( ...
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def from_file(cls, address_book, filename, supported_private_objects, localize_dates): """ Use this if you want to create a new contact from an existing .vcf file. """ return cls(address_book, filename, supported_private_objects, None, localize_dates)
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def lock_input_target_config_target_running_running(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") lock = ET.Element("lock") config = lock input = ET.SubElement(lock, "input") target = ET.SubElement(input, "target") config_target...
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def genderize(name, api_token=None): """Fetch gender from genderize.io""" GENDERIZE_API_URL = "https://api.genderize.io/" TOTAL_RETRIES = 10 MAX_RETRIES = 5 SLEEP_TIME = 0.25 STATUS_FORCELIST = [502] params = { 'name': name } if api_token: params['apikey'] = api_to...
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def update_certificate(self, certificate_id, **kwargs): """Update a certificate. :param str certificate_id: The certificate id (Required) :param str certificate_data: X509.v3 trusted certificate in PEM format. :param str signature: This parameter has been DEPRECATED in the API and does ...
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def list_assigned_licenses(entity, entity_display_name, license_keys=None, service_instance=None): ''' Lists the licenses assigned to an entity entity Dictionary representation of an entity. See ``_get_entity`` docstrings for format. entity_display_name ...
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def raw_read(self): """https://github.com/frictionlessdata/datapackage-py#resource """ contents = b'' with self.raw_iter() as filelike: for chunk in filelike: contents += chunk return contents
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def start_task_type(self, task_type_str, total_task_count): """Call when about to start processing a new type of task, typically just before entering a loop that processes many task of the given type. Args: task_type_str (str): The name of the task, used as a dict ke...
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def convert_ints_to_bytes(in_ints, num): """Convert an integer array into a byte arrays. The number of bytes forming an integer is defined by num :param in_ints: the input integers :param num: the number of bytes per int :return the integer array""" out_bytes= b"" for val in in_ints: ...
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def scaffold(): """Start a new site.""" click.echo("A whole new site? Awesome.") title = click.prompt("What's the title?") url = click.prompt("Great. What's url? http://") # Make sure that title doesn't exist. click.echo("Got it. Creating %s..." % url)
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def plot (data, headers=None, pconfig=None): """ Return HTML for a MultiQC table. :param data: 2D dict, first keys as sample names, then x:y data pairs :param headers: list of optional dicts with column config in key:value pairs. :return: HTML ready to be inserted into the page """ if headers is...
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def recordtype_row_strategy(column_names): """ Recordtype row strategy, rows returned as recordtypes Column names that are not valid Python identifiers will be replaced with col<number>_ """ try: from namedlist import namedlist as recordtype # optional dependency except ImportError: ...
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def process_save(X, y, tokenizer, proc_data_path, max_len=400, train=False, ngrams=None, limit_top_tokens=None): """Process text and save as Dataset """ if train and limit_top_tokens is not None: tokenizer.apply_encoding_options(limit_top_tokens=limit_top_tokens) X_encoded = tokenizer.encode_te...
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def session(self): """A context manager for this client's session. This function closes the current session when this client goes out of scope. """ self._session = requests.session() yield self._session.close() self._session = None
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def get_addresses_from_input_file(input_file_name): """Read addresses from input file into list of tuples. This only supports address and zipcode headers """ mode = 'r' if sys.version_info[0] < 3: mode = 'rb' with io.open(input_file_name, mode) as input_file: reader = csv.read...
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def permute(num): "Permutation for randomizing data order." if permute_data: return np.random.permutation(num) else: logging.warning("Warning not permuting data") return np.arange(num)
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def daemonize(umask=0, work_dir="/", max_fd=1024, redirect="/dev/null"): """ When this function is called, the process is daemonized (by forking + killing its parent). It becomes a background task. It is useful to release the console. """ if not redirect: redirect = "/dev/null" if h...
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def class_error(self, input_data, targets, average=True, cache=None, prediction=False): """ Return the classification error rate """ if cache is not None: activations = cache else: activations = \ self.feed_forward(input_data, pr...
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def cumsum(self, axis=0, *args, **kwargs): """ Cumulative sum of non-NA/null values. When performing the cumulative summation, any non-NA/null values will be skipped. The resulting SparseArray will preserve the locations of NaN values, but the fill value will be `np.nan` regardl...
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def _parse_directory(self): """ Parse the storage directory in the config. Returns: str """ if self._parser.has_option('storage', 'directory'): directory = self._parser.get('storage', 'directory') # Don't allow CUSTOM_APPS_DIR as a storage dir...
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def process_and_show(self): """ Run :meth:`process` and :meth:`show_source` after each other. """ for name, klass in sorted(self.classes.items()): logger.debug('Processing class: %s', name) if not isinstance(klass, DvClass): klass = DvClass(klass, ...
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def __SendMediaBody(self, start, additional_headers=None): """Send the entire media stream in a single request.""" self.EnsureInitialized() if self.total_size is None: raise exceptions.TransferInvalidError( 'Total size must be known for SendMediaBody') body_st...
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def set_end(self,t): """ Override the GPS end time (and set the duration) of this ScienceSegment. @param t: new GPS end time. """ self.__dur -= self.__end - t self.__end = t
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def valueFromString(self, value, context=None): """ Converts the inputted string text to a value that matches the type from this column type. :param value | <str> """ if value == 'now': return datetime.datetime.now().time() elif dateutil_parser: ...
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def show_ntp_input_rbridge_id(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") show_ntp = ET.Element("show_ntp") config = show_ntp input = ET.SubElement(show_ntp, "input") rbridge_id = ET.SubElement(input, "rbridge-id") rbridge_id....
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def kernel(x1, x2, method='gaussian', sigma=1, **kwargs): """Compute kernel matrix""" if method.lower() in ['gaussian', 'gauss', 'rbf']: K = np.exp(-dist(x1, x2) / (2 * sigma**2)) return K
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def getIDsFromFiles(files): """given a path or list of files, return ABF IDs.""" if type(files) is str: files=glob.glob(files+"/*.*") IDs=[] for fname in files: if fname[-4:].lower()=='.abf': ext=fname.split('.')[-1] IDs.append(os.path.basename(fname).replace('.'+...
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def merge_ticket(self, ticket_id, into_id): """ Merge ticket into another (undocumented API feature). :param ticket_id: ID of ticket to be merged :param into: ID of destination ticket :returns: ``True`` Operation was successful ``False`` ...
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def Consultar(self, nro_doc): "Llama a la API pública de AFIP para obtener los datos de una persona" n = 0 while n <= 4: n += 1 # reintentar 3 veces try: if not self.client: if DEBUG: war...
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def main(branch): """Checkout, update and branch from the specified branch.""" try: # Ensure that we're in a git repository. This command is silent unless # you're not actually in a git repository, in which case, you receive a # "Not a git repository" error message. output = subp...
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def isConjNorthNode(self): """ Returns if object is conjunct north node. """ node = self.chart.getObject(const.NORTH_NODE) return aspects.hasAspect(self.obj, node, aspList=[0])
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def _make_request(self, url, parameters, result_key): """Make http/https request to Google API. Method prepares url parameters, drops None values, and gets default values. Finally makes request using protocol assigned to client and returns data. :param url: url part - specifies...
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def outputMode(self, outputMode): """Specifies how data of a streaming DataFrame/Dataset is written to a streaming sink. Options include: * `append`:Only the new rows in the streaming DataFrame/Dataset will be written to the sink * `complete`:All the rows in the streaming Da...
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def read_messages(fobj, magic_table): """Read messages from a file-like object until stream is exhausted.""" messages = [] while True: magic = read_magic(fobj) if not magic: break func = magic_table.get(magic) if func is not None: messages.append(fun...
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def seconds_remaining(self, ttl): """Return number of seconds left before Imgur API needs to be queried for this instance. :param int ttl: Number of seconds before this is considered out of date. :return: Seconds left before this is expired. 0 indicated update needed (no negatives). :r...
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def first(self): """Return the first record or raise an exception if the result doesn't contain any data :return: - Dictionary containing the first item in the response content :raise: - NoResults: If no results were found """ if not self._stream: ...
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def save(self): """ Saves a new rating - authenticated users can update the value if they've previously rated. """ user = self.request.user self.undoing = False rating_value = self.cleaned_data["value"] manager = self.rating_manager if user.is_aut...
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def pack(self): '''pack a FD FDM buffer from current values''' for i in range(len(self.values)): if math.isnan(self.values[i]): self.values[i] = 0 return struct.pack(self.pack_string, *self.values)
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def install_virtualenv_p3(root, python_version): """ Install virtual environment for Python 3.3+; removing the old one if it exists """ import venv builder = venv.EnvBuilder(system_site_packages=False, clear=True, symlinks=False, upgrade=False) builder.create(root) ret_code = subprocess.call([VE_SCR...
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def list_consumer_group(self, project, logstore): """ List consumer group :type project: string :param project: project name :type logstore: string :param logstore: logstore name :return: ListConsumerGroupResponse """ resource = "/logstores...
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def setViewModel(self, model): """Sets the model for the enclosed TableView in this widget. Args: model (DataFrameModel): The model to be displayed by the Table View. """ if isinstance(model, DataFrameModel): self.enableEditing(False) ...
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def get_document(self, id): """ Retrieves a particular document from this project. """ obj_list = self.document_list matches = [i for i in obj_list if str(i.id) == str(id)] if not matches: raise DoesNotExistError("The resource you've requested does not \ exist...
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def on_connect(self, connection): "Called when the socket connects" self._sock = connection._sock self._buffer = SocketBuffer(self._sock, self.socket_read_size) self.encoder = connection.encoder
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def update_video(self, access_token, video_id, title=None, tags=None, category=None, copyright_type=None, public_type=None, watch_password=None, description=None, thumbnail_seq=None): """doc: http://open.youku.com/docs/doc?id=50 """ ...
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def isin(self, values): """ Compute boolean array of whether each index value is found in the passed set of values. Parameters ---------- values : set or sequence of values Returns ------- is_contained : ndarray (boolean dtype) """ ...
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def get_extended_summaryf(self, *args, **kwargs): """Extract the extended summary from a function docstring This function can be used as a decorator to extract the extended summary of a function docstring (similar to :meth:`get_sectionsf`). Parameters ---------- ``*args...
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def of(self, *indented_blocks) -> "CodeBlock": """ By default, marks the block as expecting an indented "body" blocks of which are then supplied as arguments to this method. Unless the block specifies a "closed_by", if no body blocks are supplied or they are all Nones, this will...
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def trigger_methods(instance, args): """" Triggers specific class methods using a simple reflection mechanism based on the given input dictionary params. Arguments: instance (object): target instance to dynamically trigger methods. args (iterable): input arguments to trigger objects to ...
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def get_block_symbol_data(editor, block): """ Gets the list of ParenthesisInfo for specific text block. :param editor: Code editor instance :param block: block to parse """ def list_symbols(editor, block, character): """ Retuns a list of symbols found in the block text ...
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def call(self, method, *args): """ Calls the service method defined with the arguments provided """ try: response = getattr(self.client.service, method)(*args) except (URLError, SSLError) as e: log.exception('Failed to connect to responsys service') raise Conn...
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async def publish(self, subject, payload, ack_handler=None, ack_wait=DEFAULT_ACK_WAIT, ): """ Publishes a payload onto a subject. By default, it will block until the message which has been published has been acked back. A...
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def norm(table): """ fit to normal distribution """ print('# norm dist is broken', file=sys.stderr) exit() from matplotlib.pyplot import hist as hist t = [] for i in table: t.append(np.ndarray.tolist(hist(i, bins = len(i), normed = True)[0])) return t
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def new_cipher(self, key, iv, digest=None): """ @param key: the secret key, a byte string @param iv: the initialization vector, a byte string. Used as the initial nonce in counter mode @param digest: also known as tag or icv. A byte string containing the ...
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def get_external_tools_in_course(self, course_id, params={}): """ Return external tools for the passed canvas course id. https://canvas.instructure.com/doc/api/external_tools.html#method.external_tools.index """ url = COURSES_API.format(course_id) + "/external_tools" ex...
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def add_cell_params(self, params, pos=None): """ Add cell of Python parameters :param params: parameters to add :return: """ self.params = params cell_str = '# Parameters:\n' for k, v in params.items(): cell_str += "{} = {}\n".format(k, repr(v...
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def post_process(self, paths, dry_run=False, **options): """ Overridden to work around https://code.djangoproject.com/ticket/19111 """ with post_process_error_counter(self): with patched_name_fn(self, 'hashed_name', 'hashed name'): with patched_name_fn(self, '...
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