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mosdef-hub/mbuild
mbuild/coordinate_transform.py
https://github.com/mosdef-hub/mbuild/blob/dcb80a2becd5d0e6a7e3e7bcb1b59793c46a2dd3/mbuild/coordinate_transform.py#L308-L348
def equivalence_transform(compound, from_positions, to_positions, add_bond=True): """Computes an affine transformation that maps the from_positions to the respective to_positions, and applies this transformation to the compound. Parameters ---------- compound : mb.Compound The Compound to b...
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Computes an affine transformation that maps the from_positions to the respective to_positions, and applies this transformation to the compound. Parameters ---------- compound : mb.Compound The Compound to be transformed. from_positions : np.ndarray, shape=(n, 3), dtype=float Origina...
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python
train
44.731707
materialsproject/pymatgen
pymatgen/core/structure.py
https://github.com/materialsproject/pymatgen/blob/4ca558cf72f8d5f8a1f21dfdfc0181a971c186da/pymatgen/core/structure.py#L1228-L1272
def copy(self, site_properties=None, sanitize=False): """ Convenience method to get a copy of the structure, with options to add site properties. Args: site_properties (dict): Properties to add or override. The properties are specified in the same way as the ...
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python
train
48.111111
edx/completion
completion/utilities.py
https://github.com/edx/completion/blob/5c23806f6db69ce6be3fd068fc5b5fdf4d66bd60/completion/utilities.py#L13-L29
def get_key_to_last_completed_course_block(user, course_key): """ Returns the last block a "user" completed in a course (stated as "course_key"). raises UnavailableCompletionData when the user has not completed blocks in the course. raises UnavailableCompletionData when the visual progress waffle ...
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python
train
32.882353
Jajcus/pyxmpp2
pyxmpp2/stanzaprocessor.py
https://github.com/Jajcus/pyxmpp2/blob/14a40a3950910a9cd008b55f0d8905aa0186ce18/pyxmpp2/stanzaprocessor.py#L302-L312
def process_presence(self, stanza): """Process presence stanza. Pass it to a handler of the stanza's type and payload namespace. :Parameters: - `stanza`: presence stanza to be handled """ stanza_type = stanza.stanza_type return self.__try_handlers(self._pre...
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Process presence stanza. Pass it to a handler of the stanza's type and payload namespace. :Parameters: - `stanza`: presence stanza to be handled
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python
valid
31.454545
jasonrollins/shareplum
shareplum/ListDict.py
https://github.com/jasonrollins/shareplum/blob/404f320808912619920e2d787f2c4387225a14e0/shareplum/ListDict.py#L4-L33
def changes(new_cmp_dict, old_cmp_dict, id_column, columns): """Return a list dict of the changes of the rows that exist in both dictionaries User must provide an ID column for old_cmp_dict """ update_ldict = [] same_keys = set(new_cmp_dict).intersection(set(old_cmp_dict)) for same_ke...
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Return a list dict of the changes of the rows that exist in both dictionaries User must provide an ID column for old_cmp_dict
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python
train
39.233333
Alveo/pyalveo
pyalveo/objects.py
https://github.com/Alveo/pyalveo/blob/1e9eec22bc031bc9a08066f9966565a546e6242e/pyalveo/objects.py#L361-L377
def append(self, items): """ Add some items to this ItemList and save the changes to the server :param items: the items to add, either as a List of Item objects, an ItemList, a List of item URLs as Strings, a single item URL as a String, or a single Item object :rtype: ...
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Add some items to this ItemList and save the changes to the server :param items: the items to add, either as a List of Item objects, an ItemList, a List of item URLs as Strings, a single item URL as a String, or a single Item object :rtype: String :returns: the server s...
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python
train
31.705882
peri-source/peri
peri/comp/exactpsf.py
https://github.com/peri-source/peri/blob/61beed5deaaf978ab31ed716e8470d86ba639867/peri/comp/exactpsf.py#L661-L667
def psffunc(self, *args, **kwargs): """Calculates a linescan psf""" if self.polychromatic: func = psfcalc.calculate_polychrome_linescan_psf else: func = psfcalc.calculate_linescan_psf return func(*args, **kwargs)
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python
valid
37.428571
brocade/pynos
pynos/versions/ver_6/ver_6_0_1/yang/brocade_interface_ext.py
https://github.com/brocade/pynos/blob/bd8a34e98f322de3fc06750827d8bbc3a0c00380/pynos/versions/ver_6/ver_6_0_1/yang/brocade_interface_ext.py#L326-L342
def get_interface_switchport_output_switchport_fcoe_port_enabled(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") get_interface_switchport = ET.Element("get_interface_switchport") config = get_interface_switchport output = ET.SubElement(get_interf...
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python
train
52.294118
numenta/htmresearch
htmresearch/algorithms/TM.py
https://github.com/numenta/htmresearch/blob/70c096b09a577ea0432c3f3bfff4442d4871b7aa/htmresearch/algorithms/TM.py#L1808-L1844
def getBestMatchingCell(self, c, activeState): """Find weakly activated cell in column. Returns index and segment of most activated segment above minThreshold. """ # Collect all cells in column c that have at least minThreshold in the most # activated segment bestActivityInCol = self.minThreshol...
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Find weakly activated cell in column. Returns index and segment of most activated segment above minThreshold.
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python
train
31.594595
radzak/rtv-downloader
rtv/extractors/common.py
https://github.com/radzak/rtv-downloader/blob/b9114b7f4c35fabe6ec9ad1764a65858667a866e/rtv/extractors/common.py#L48-L52
def update_entries(entries: Entries, data: dict) -> None: """Update each entry in the list with some data.""" # TODO: Is mutating the list okay, making copies is such a pain in the ass for entry in entries: entry.update(data)
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Update each entry in the list with some data.
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python
train
51.4
pydata/xarray
xarray/core/ops.py
https://github.com/pydata/xarray/blob/6d93a95d05bdbfc33fff24064f67d29dd891ab58/xarray/core/ops.py#L135-L165
def fillna(data, other, join="left", dataset_join="left"): """Fill missing values in this object with data from the other object. Follows normal broadcasting and alignment rules. Parameters ---------- join : {'outer', 'inner', 'left', 'right'}, optional Method for joining the indexes of the...
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Fill missing values in this object with data from the other object. Follows normal broadcasting and alignment rules. Parameters ---------- join : {'outer', 'inner', 'left', 'right'}, optional Method for joining the indexes of the passed objects along each dimension - 'outer': us...
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python
train
45.451613
MagicStack/asyncpg
asyncpg/connection.py
https://github.com/MagicStack/asyncpg/blob/92c2d81256a1efd8cab12c0118d74ccd1c18131b/asyncpg/connection.py#L532-L592
async def copy_from_query(self, query, *args, output, timeout=None, format=None, oids=None, delimiter=None, null=None, header=None, quote=None, escape=None, force_quote=None, encoding=None): "...
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Copy the results of a query to a file or file-like object. :param str query: The query to copy the results of. :param args: Query arguments. :param output: A :term:`path-like object <python:path-like object>`, or a :term:`file-like object <pytho...
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python
train
35.672131
bhmm/bhmm
bhmm/hidden/api.py
https://github.com/bhmm/bhmm/blob/9804d18c2ddb684fb4d90b544cc209617a89ca9a/bhmm/hidden/api.py#L277-L302
def sample_path(alpha, A, pobs, T=None): """ Sample the hidden pathway S from the conditional distribution P ( S | Parameters, Observations ) Parameters ---------- alpha : ndarray((T,N), dtype = float), optional, default = None alpha[t,i] is the ith forward coefficient of time t. A : ndarra...
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Sample the hidden pathway S from the conditional distribution P ( S | Parameters, Observations ) Parameters ---------- alpha : ndarray((T,N), dtype = float), optional, default = None alpha[t,i] is the ith forward coefficient of time t. A : ndarray((N,N), dtype = float) transition matrix...
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python
train
36.5
zalando/patroni
patroni/postgresql.py
https://github.com/zalando/patroni/blob/f6d29081c90af52064b981cdd877a07338d86038/patroni/postgresql.py#L1699-L1712
def clone(self, clone_member): """ - initialize the replica from an existing member (master or replica) - initialize the replica using the replica creation method that works without the replication connection (i.e. restore from on-disk base backup) ...
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- initialize the replica from an existing member (master or replica) - initialize the replica using the replica creation method that works without the replication connection (i.e. restore from on-disk base backup)
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python
train
38
econ-ark/HARK
HARK/ConsumptionSaving/ConsMarkovModel.py
https://github.com/econ-ark/HARK/blob/3d184153a189e618a87c9540df1cd12044039cc5/HARK/ConsumptionSaving/ConsMarkovModel.py#L820-L869
def getShocks(self): ''' Gets new Markov states and permanent and transitory income shocks for this period. Samples from IncomeDstn for each period-state in the cycle. Parameters ---------- None Returns ------- None ''' # Get new...
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Gets new Markov states and permanent and transitory income shocks for this period. Samples from IncomeDstn for each period-state in the cycle. Parameters ---------- None Returns ------- None
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python
train
50.66
flyte/xbee-helper
xbee_helper/device.py
https://github.com/flyte/xbee-helper/blob/8b47675ad44d8a57defea459682d129379af348d/xbee_helper/device.py#L73-L82
def convert_adc(value, output_type, max_volts): """ Converts the output from the ADC into the desired type. """ return { const.ADC_RAW: lambda x: x, const.ADC_PERCENTAGE: adc_to_percentage, const.ADC_VOLTS: adc_to_volts, const.ADC_MILLIVOLTS: adc_to_millivolts }[outpu...
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Converts the output from the ADC into the desired type.
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python
train
33.6
yahoo/TensorFlowOnSpark
tensorflowonspark/TFNode.py
https://github.com/yahoo/TensorFlowOnSpark/blob/5e4b6c185ab722fd0104ede0377e1149ea8d6f7c/tensorflowonspark/TFNode.py#L271-L284
def batch_results(self, results): """Push a batch of output results to the Spark output RDD of ``TFCluster.inference()``. Note: this currently expects a one-to-one mapping of input to output data, so the length of the ``results`` array should match the length of the previously retrieved batch of input data...
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Push a batch of output results to the Spark output RDD of ``TFCluster.inference()``. Note: this currently expects a one-to-one mapping of input to output data, so the length of the ``results`` array should match the length of the previously retrieved batch of input data. Args: :results: array of out...
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python
train
43.357143
DistrictDataLabs/yellowbrick
yellowbrick/features/importances.py
https://github.com/DistrictDataLabs/yellowbrick/blob/59b67236a3862c73363e8edad7cd86da5b69e3b2/yellowbrick/features/importances.py#L239-L256
def finalize(self, **kwargs): """ Finalize the drawing setting labels and title. """ # Set the title self.set_title('Feature Importances of {} Features using {}'.format( len(self.features_), self.name)) # Set the xlabel self.ax.set_xlabel(self._ge...
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Finalize the drawing setting labels and title.
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python
train
29.888889
vhf/confusable_homoglyphs
confusable_homoglyphs/confusables.py
https://github.com/vhf/confusable_homoglyphs/blob/14f43ddd74099520ddcda29fac557c27a28190e6/confusable_homoglyphs/confusables.py#L13-L38
def is_mixed_script(string, allowed_aliases=['COMMON']): """Checks if ``string`` contains mixed-scripts content, excluding script blocks aliases in ``allowed_aliases``. E.g. ``B. C`` is not considered mixed-scripts by default: it contains characters from **Latin** and **Common**, but **Common** is excl...
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Checks if ``string`` contains mixed-scripts content, excluding script blocks aliases in ``allowed_aliases``. E.g. ``B. C`` is not considered mixed-scripts by default: it contains characters from **Latin** and **Common**, but **Common** is excluded by default. >>> confusables.is_mixed_script('Abç') ...
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python
train
36.269231
annoviko/pyclustering
pyclustering/cluster/optics.py
https://github.com/annoviko/pyclustering/blob/98aa0dd89fd36f701668fb1eb29c8fb5662bf7d0/pyclustering/cluster/optics.py#L143-L182
def calculate_connvectivity_radius(self, amount_clusters, maximum_iterations = 100): """! @brief Calculates connectivity radius of allocation specified amount of clusters using ordering diagram and marks borders of clusters using indexes of values of ordering diagram. @details Parameter 'maxi...
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! @brief Calculates connectivity radius of allocation specified amount of clusters using ordering diagram and marks borders of clusters using indexes of values of ordering diagram. @details Parameter 'maximum_iterations' is used to protect from hanging when it is impossible to allocate specified numbe...
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python
valid
49.525
marteinn/genres
genres/db.py
https://github.com/marteinn/genres/blob/4bbc90f7c2c527631380c08b4d99a4e40abed955/genres/db.py#L38-L86
def parse(self, data): """ Split and iterate through the datafile to extract genres, tags and points. """ categories = data.split("\n\n") reference = {} reference_points = {} genre_index = [] tag_index = [] for category in categories: ...
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Split and iterate through the datafile to extract genres, tags and points.
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python
train
29.489796
tensorflow/probability
tensorflow_probability/python/optimizer/nelder_mead.py
https://github.com/tensorflow/probability/blob/e87fe34111d68c35db0f9eeb4935f1ece9e1a8f5/tensorflow_probability/python/optimizer/nelder_mead.py#L765-L789
def _prepare_args_with_initial_simplex(objective_function, initial_simplex, objective_at_initial_simplex, batch_evaluate_objective): """Evaluates the objective function at the specified initial simplex...
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Evaluates the objective function at the specified initial simplex.
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python
test
44.8
thebigmunch/gmusicapi-wrapper
gmusicapi_wrapper/decorators.py
https://github.com/thebigmunch/gmusicapi-wrapper/blob/8708683cd33955def1378fc28319ef37805b851d/gmusicapi_wrapper/decorators.py#L12-L24
def cast_to_list(position): """Cast the positional argument at given position into a list if not already a list.""" @wrapt.decorator def wrapper(function, instance, args, kwargs): if not isinstance(args[position], list): args = list(args) args[position] = [args[position]] args = tuple(args) return fun...
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Cast the positional argument at given position into a list if not already a list.
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python
valid
26.692308
sqlboy/fileseq
src/fileseq/filesequence.py
https://github.com/sqlboy/fileseq/blob/f26c3c3c383134ce27d5dfe37793e1ebe88e69ad/src/fileseq/filesequence.py#L636-L690
def findSequenceOnDisk(cls, pattern, strictPadding=False): """ Search for a specific sequence on disk. The padding characters used in the `pattern` are used to filter the frame values of the files on disk (if `strictPadding` is True). Examples: Find sequence matchin...
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Search for a specific sequence on disk. The padding characters used in the `pattern` are used to filter the frame values of the files on disk (if `strictPadding` is True). Examples: Find sequence matching basename and extension, and a wildcard for any frame. ...
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python
train
33.727273
JosuaKrause/quick_server
quick_server/quick_server.py
https://github.com/JosuaKrause/quick_server/blob/55dc7c5fe726a341f8476f749fe0f9da156fc1cb/quick_server/quick_server.py#L1040-L1060
def do_GET(self): """Handles a GET request.""" thread_local.clock_start = get_time() thread_local.status_code = 200 thread_local.message = None thread_local.headers = [] thread_local.end_headers = [] thread_local.size = -1 thread_local.method = 'GET' ...
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Handles a GET request.
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python
train
34.047619
apache/incubator-mxnet
cpp-package/scripts/lint.py
https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/cpp-package/scripts/lint.py#L123-L144
def get_header_guard_dmlc(filename): """Get Header Guard Convention for DMLC Projects. For headers in include, directly use the path For headers in src, use project name plus path Examples: with project-name = dmlc include/dmlc/timer.h -> DMLC_TIMTER_H_ src/io/libsvm_parser.h -> DMLC_IO_...
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Get Header Guard Convention for DMLC Projects. For headers in include, directly use the path For headers in src, use project name plus path Examples: with project-name = dmlc include/dmlc/timer.h -> DMLC_TIMTER_H_ src/io/libsvm_parser.h -> DMLC_IO_LIBSVM_PARSER_H_
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python
train
44.818182
mattupstate/flask-security
flask_security/views.py
https://github.com/mattupstate/flask-security/blob/a401fb47018fbbbe0b899ea55afadfd0e3cd847a/flask_security/views.py#L67-L89
def login(): """View function for login view""" form_class = _security.login_form if request.is_json: form = form_class(MultiDict(request.get_json())) else: form = form_class(request.form) if form.validate_on_submit(): login_user(form.user, remember=form.remember.data) ...
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View function for login view
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python
train
30.608696
Bogdanp/dramatiq
dramatiq/brokers/stub.py
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/brokers/stub.py#L66-L81
def declare_queue(self, queue_name): """Declare a queue. Has no effect if a queue with the given name has already been declared. Parameters: queue_name(str): The name of the new queue. """ if queue_name not in self.queues: self.emit_before("declare_queue",...
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Declare a queue. Has no effect if a queue with the given name has already been declared. Parameters: queue_name(str): The name of the new queue.
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python
train
39.3125
aarongarrett/inspyred
inspyred/ec/variators/mutators.py
https://github.com/aarongarrett/inspyred/blob/d5976ab503cc9d51c6f586cbb7bb601a38c01128/inspyred/ec/variators/mutators.py#L141-L171
def scramble_mutation(random, candidate, args): """Return the mutants created by scramble mutation on the candidates. This function performs scramble mutation. It randomly chooses two locations along the candidate and scrambles the values within that slice. .. Arguments: random -- the rand...
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python
train
33.806452
opencobra/memote
memote/support/biomass.py
https://github.com/opencobra/memote/blob/276630fcd4449fb7b914186edfd38c239e7052df/memote/support/biomass.py#L129-L163
def find_blocked_biomass_precursors(reaction, model): """ Return a list of all biomass precursors that cannot be produced. Parameters ---------- reaction : cobra.core.reaction.Reaction The biomass reaction of the model under investigation. model : cobra.Model The metabolic model...
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Return a list of all biomass precursors that cannot be produced. Parameters ---------- reaction : cobra.core.reaction.Reaction The biomass reaction of the model under investigation. model : cobra.Model The metabolic model under investigation. Returns ------- list Me...
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python
train
32.771429
libtcod/python-tcod
tcod/libtcodpy.py
https://github.com/libtcod/python-tcod/blob/8ba10c5cfb813eaf3e834de971ba2d6acb7838e4/tcod/libtcodpy.py#L1389-L1408
def console_print_rect( con: tcod.console.Console, x: int, y: int, w: int, h: int, fmt: str ) -> int: """Print a string constrained to a rectangle. If h > 0 and the bottom of the rectangle is reached, the string is truncated. If h = 0, the string is only truncated if it reaches the bottom of the co...
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Print a string constrained to a rectangle. If h > 0 and the bottom of the rectangle is reached, the string is truncated. If h = 0, the string is only truncated if it reaches the bottom of the console. Returns: int: The number of lines of text once word-wrapped. .. deprecated:: 8.5 ...
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python
train
28
aquatix/ns-api
ns_api.py
https://github.com/aquatix/ns-api/blob/9b3379f8df6217132f457c4363457c16321c2448/ns_api.py#L81-L88
def list_to_json(source_list): """ Serialise all the items in source_list to json """ result = [] for item in source_list: result.append(item.to_json()) return result
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Serialise all the items in source_list to json
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python
train
23.875
chriso/timeseries
timeseries/data_frame.py
https://github.com/chriso/timeseries/blob/8b81e6cfd955a7cf75a421dfdb71b3f9e53be64d/timeseries/data_frame.py#L32-L52
def plot(self, overlay=True, **labels): # pragma: no cover '''Plot all time series in the group.''' pylab = LazyImport.pylab() colours = list('rgbymc') colours_len = len(colours) colours_pos = 0 plots = len(self.groups) for name, series in self.groups.iteritems():...
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Plot all time series in the group.
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python
train
37.714286
rainwoodman/kdcount
kdcount/correlate.py
https://github.com/rainwoodman/kdcount/blob/483548f6d27a4f245cd5d98880b5f4edd6cc8dc1/kdcount/correlate.py#L317-L326
def _update_mean_coords(self, dig, N, centers_sum, **paircoords): """ Update the mean coordinate sums """ if N is None or centers_sum is None: return N.flat[:] += utils.bincount(dig, 1., minlength=N.size) for i, dim in enumerate(self.dims): size = centers_sum...
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Update the mean coordinate sums
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python
train
41
echinopsii/net.echinopsii.ariane.community.cli.python3
ariane_clip3/natsd/driver.py
https://github.com/echinopsii/net.echinopsii.ariane.community.cli.python3/blob/0a7feddebf66fee4bef38d64f456d93a7e9fcd68/ariane_clip3/natsd/driver.py#L156-L202
def on_stop(self): """ stop requester """ LOGGER.debug("natsd.Requester.on_stop") self.is_started = False try: LOGGER.debug("natsd.Requester.on_stop - unsubscribe from " + str(self.responseQS)) next(self.nc.unsubscribe(self.responseQS)) exc...
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stop requester
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python
train
50.021277
aksas/pypo4sel
core/pypo4sel/core/waiter.py
https://github.com/aksas/pypo4sel/blob/935b5f9bfa6682aefdef8a43ebcbcf274dec752c/core/pypo4sel/core/waiter.py#L73-L83
def wait_displayed(element, timeout=None, fail_on_timeout=None): """ Wait until element becomes visible or time out. Returns true is element became visible, otherwise false. If timeout is not specified or 0, then uses specific element wait timeout. :param element: :param timeout: :param fail...
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Wait until element becomes visible or time out. Returns true is element became visible, otherwise false. If timeout is not specified or 0, then uses specific element wait timeout. :param element: :param timeout: :param fail_on_timeout: :return:
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python
train
40.090909
pybluez/pybluez
examples/advanced/write-inquiry-scan.py
https://github.com/pybluez/pybluez/blob/e0dc4093dcbaa3ecb3fa24f8ccf22bbfe6b57fc9/examples/advanced/write-inquiry-scan.py#L6-L36
def read_inquiry_scan_activity(sock): """returns the current inquiry scan interval and window, or -1 on failure""" # save current filter old_filter = sock.getsockopt( bluez.SOL_HCI, bluez.HCI_FILTER, 14) # Setup socket filter to receive only events related to the # read_inquiry_mode command ...
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returns the current inquiry scan interval and window, or -1 on failure
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python
train
37.645161
apriha/lineage
src/lineage/__init__.py
https://github.com/apriha/lineage/blob/13106a62a959a80ac26c68d1566422de08aa877b/src/lineage/__init__.py#L104-L265
def remap_snps(self, individual, target_assembly, complement_bases=True): """ Remap the SNP coordinates of an individual from one assembly to another. This method uses the assembly map endpoint of the Ensembl REST API service (via ``Resources``'s ``EnsemblRestClient``) to convert SNP coordinate...
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Remap the SNP coordinates of an individual from one assembly to another. This method uses the assembly map endpoint of the Ensembl REST API service (via ``Resources``'s ``EnsemblRestClient``) to convert SNP coordinates / positions from one assembly to another. After remapping, the coordinates /...
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python
train
38.407407
sfstpala/pcr
pcr/maths.py
https://github.com/sfstpala/pcr/blob/313ec17585565a0b9740f7b3f47d7a93bf37a7fc/pcr/maths.py#L24-L31
def check_candidate(a, d, n, s): """Part of the Miller-Rabin primality test in is_prime().""" if pow(a, d, n) == 1: return False for i in range(s): if pow(a, 2 ** i * d, n) == n - 1: return False return True
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Part of the Miller-Rabin primality test in is_prime().
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python
train
30.5
nerdvegas/rez
src/rez/vendor/sortedcontainers/sorteddict.py
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/vendor/sortedcontainers/sorteddict.py#L676-L689
def index(self, key, start=None, stop=None): """ Return the smallest *k* such that `itemssview[k] == key` and `start <= k < end`. Raises `KeyError` if *key* is not present. *stop* defaults to the end of the set. *start* defaults to the beginning. Negative indexes are supporte...
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Return the smallest *k* such that `itemssview[k] == key` and `start <= k < end`. Raises `KeyError` if *key* is not present. *stop* defaults to the end of the set. *start* defaults to the beginning. Negative indexes are supported, as for slice indices.
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python
train
43
ghukill/pyfc4
pyfc4/models.py
https://github.com/ghukill/pyfc4/blob/59011df592f08978c4a901a908862d112a5dcf02/pyfc4/models.py#L357-L387
def keep_alive(self): ''' Keep current transaction alive, updates self.expires Args: None Return: None: sets new self.expires ''' # keep transaction alive txn_response = self.api.http_request('POST','%sfcr:tx' % self.root, data=None, headers=None) # if 204, transaction kept alive if txn_res...
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Keep current transaction alive, updates self.expires Args: None Return: None: sets new self.expires
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python
train
24.806452
StackStorm/pybind
pybind/nos/v6_0_2f/__init__.py
https://github.com/StackStorm/pybind/blob/44c467e71b2b425be63867aba6e6fa28b2cfe7fb/pybind/nos/v6_0_2f/__init__.py#L7434-L7457
def _set_openflow_controller(self, v, load=False): """ Setter method for openflow_controller, mapped from YANG variable /openflow_controller (list) If this variable is read-only (config: false) in the source YANG file, then _set_openflow_controller is considered as a private method. Backends looking...
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Setter method for openflow_controller, mapped from YANG variable /openflow_controller (list) If this variable is read-only (config: false) in the source YANG file, then _set_openflow_controller is considered as a private method. Backends looking to populate this variable should do so via calling thisObj...
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python
train
130.541667
avalente/appmetrics
appmetrics/meter.py
https://github.com/avalente/appmetrics/blob/366fc7e1ca897e49a2227cbfa43bfa02a47f1acc/appmetrics/meter.py#L112-L125
def notify(self, value): """Add a new observation to the metric""" with self.lock: #TODO: this could slow down slow-rate incoming updates # since the number of ticks depends on the actual time # passed since the latest notification. Consider using # a rea...
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Add a new observation to the metric
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python
train
34.785714
ajyoon/blur
examples/waves/amplitude.py
https://github.com/ajyoon/blur/blob/25fcf083af112bb003956a7a7e1c6ff7d8fef279/examples/waves/amplitude.py#L90-L101
def step_amp(self): """ Change the amplitude according to the change rate and drift target. Returns: None """ difference = self.drift_target - self._raw_value if abs(difference) < self.change_rate: self.value = self.drift_target else: delt...
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Change the amplitude according to the change rate and drift target. Returns: None
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python
train
33.583333
hmartiniano/faz
faz/task.py
https://github.com/hmartiniano/faz/blob/36a58c45e8c0718d38cb3c533542c8743e7e7a65/faz/task.py#L82-L101
def expand_variables(self): """ Expand variables in the task code. Only variables who use the $[<variable name>] format are expanded. Variables using the $<variable name> and ${<variable name>} formats are expanded by the shell (in the cases where bash is the interpreter. ...
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Expand variables in the task code. Only variables who use the $[<variable name>] format are expanded. Variables using the $<variable name> and ${<variable name>} formats are expanded by the shell (in the cases where bash is the interpreter.
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python
train
50.95
clalancette/pycdlib
pycdlib/pycdlib.py
https://github.com/clalancette/pycdlib/blob/1e7b77a809e905d67dc71e12d70e850be26b6233/pycdlib/pycdlib.py#L4065-L4119
def get_file_from_iso(self, local_path, **kwargs): # type: (str, Any) -> None ''' A method to fetch a single file from the ISO and write it out to a local file. Parameters: local_path - The local file to write to. blocksize - The number of bytes in each transfe...
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A method to fetch a single file from the ISO and write it out to a local file. Parameters: local_path - The local file to write to. blocksize - The number of bytes in each transfer. iso_path - The absolute ISO9660 path to lookup on the ISO (exclusive with ...
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python
train
44.290909
ioos/compliance-checker
compliance_checker/util.py
https://github.com/ioos/compliance-checker/blob/ee89c27b0daade58812489a2da3aa3b6859eafd9/compliance_checker/util.py#L16-L25
def datetime_is_iso(date_str): """Attempts to parse a date formatted in ISO 8601 format""" try: if len(date_str) > 10: dt = isodate.parse_datetime(date_str) else: dt = isodate.parse_date(date_str) return True, [] except: # Any error qualifies as not ISO forma...
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Attempts to parse a date formatted in ISO 8601 format
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python
train
39
caseyjlaw/rtpipe
rtpipe/interactive.py
https://github.com/caseyjlaw/rtpipe/blob/ac33e4332cf215091a63afbb3137850876d73ec0/rtpipe/interactive.py#L575-L588
def calcontime(data, inds=None): """ Given indices of good times, calculate total time per scan with indices. """ if not inds: inds = range(len(data['time'])) logger.info('No indices provided. Assuming all are valid.') scans = set([data['scan'][i] for i in inds]) total = 0. for sca...
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Given indices of good times, calculate total time per scan with indices.
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python
train
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StackStorm/pybind
pybind/slxos/v17s_1_02/mpls_config/router/mpls/mpls_cmds_holder/mpls_interface/rsvp/interface_refresh_reduction/__init__.py
https://github.com/StackStorm/pybind/blob/44c467e71b2b425be63867aba6e6fa28b2cfe7fb/pybind/slxos/v17s_1_02/mpls_config/router/mpls/mpls_cmds_holder/mpls_interface/rsvp/interface_refresh_reduction/__init__.py#L161-L182
def _set_bundle_message(self, v, load=False): """ Setter method for bundle_message, mapped from YANG variable /mpls_config/router/mpls/mpls_cmds_holder/mpls_interface/rsvp/interface_refresh_reduction/bundle_message (container) If this variable is read-only (config: false) in the source YANG file, then _...
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Setter method for bundle_message, mapped from YANG variable /mpls_config/router/mpls/mpls_cmds_holder/mpls_interface/rsvp/interface_refresh_reduction/bundle_message (container) If this variable is read-only (config: false) in the source YANG file, then _set_bundle_message is considered as a private method. ...
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python
train
82.772727
Ouranosinc/xclim
xclim/indices.py
https://github.com/Ouranosinc/xclim/blob/2080d139188bd8de2aeca097a025c2d89d6e0e09/xclim/indices.py#L2088-L2109
def warm_night_frequency(tasmin, thresh='22 degC', freq='YS'): r"""Frequency of extreme warm nights Return the number of days with tasmin > thresh per period Parameters ---------- tasmin : xarray.DataArray Minimum daily temperature [℃] or [K] thresh : str Threshold temperature on w...
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r"""Frequency of extreme warm nights Return the number of days with tasmin > thresh per period Parameters ---------- tasmin : xarray.DataArray Minimum daily temperature [℃] or [K] thresh : str Threshold temperature on which to base evaluation [℃] or [K]. Default : '22 degC' freq : ...
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python
train
30
pixelogik/NearPy
nearpy/storage/storage_mongo.py
https://github.com/pixelogik/NearPy/blob/1b534b864d320d875508e95cd2b76b6d8c07a90b/nearpy/storage/storage_mongo.py#L172-L180
def store_hash_configuration(self, lshash): """ Stores hash configuration """ self.mongo_object.insert_one( {'hash_conf_name': lshash.hash_name+'_conf', 'hash_configuration': pickle.dumps(lshash.get_config()) } )
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Stores hash configuration
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python
train
31.333333
CloverHealth/temple
temple/cli.py
https://github.com/CloverHealth/temple/blob/d7b75da2459f72ba74d6f3b6e1ab95c3d1b92ccd/temple/cli.py#L114-L118
def switch(template, version): """ Switch a project's template to a different template. """ temple.update.update(new_template=template, new_version=version)
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Switch a project's template to a different template.
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python
valid
33.6
chaoss/grimoirelab-sirmordred
sirmordred/eclipse_projects_lib.py
https://github.com/chaoss/grimoirelab-sirmordred/blob/d6ac94d28d707fae23170064d078f1edf937d13e/sirmordred/eclipse_projects_lib.py#L186-L200
def compose_projects_json(projects, data): """ Compose projects.json with all data sources :param projects: projects.json :param data: eclipse JSON :return: projects.json with all data sources """ projects = compose_git(projects, data) projects = compose_mailing_lists(projects, data) pr...
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Compose projects.json with all data sources :param projects: projects.json :param data: eclipse JSON :return: projects.json with all data sources
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python
valid
32.8
googleapis/google-cloud-python
logging/google/cloud/logging/client.py
https://github.com/googleapis/google-cloud-python/blob/85e80125a59cb10f8cb105f25ecc099e4b940b50/logging/google/cloud/logging/client.py#L222-L243
def sink(self, name, filter_=None, destination=None): """Creates a sink bound to the current client. :type name: str :param name: the name of the sink to be constructed. :type filter_: str :param filter_: (optional) the advanced logs filter expression de...
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python
train
43.409091
googleapis/google-cloud-python
spanner/google/cloud/spanner_v1/pool.py
https://github.com/googleapis/google-cloud-python/blob/85e80125a59cb10f8cb105f25ecc099e4b940b50/spanner/google/cloud/spanner_v1/pool.py#L162-L174
def bind(self, database): """Associate the pool with a database. :type database: :class:`~google.cloud.spanner_v1.database.Database` :param database: database used by the pool: used to create sessions when needed. """ self._database = database ...
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Associate the pool with a database. :type database: :class:`~google.cloud.spanner_v1.database.Database` :param database: database used by the pool: used to create sessions when needed.
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python
train
34.692308
alexhayes/django-toolkit
django_toolkit/db/models.py
https://github.com/alexhayes/django-toolkit/blob/b64106392fad596defc915b8235fe6e1d0013b5b/django_toolkit/db/models.py#L77-L85
def unlock(self): """ Unlock the table(s) """ cursor = connection.cursor() cursor.execute("UNLOCK TABLES") logger.debug('Unlocked tables') row = cursor.fetchone() return row
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Unlock the table(s)
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python
train
25.444444
bachiraoun/pyrep
Repository.py
https://github.com/bachiraoun/pyrep/blob/0449bf2fad3e3e8dda855d4686a8869efeefd433/Repository.py#L2124-L2297
def dump_file(self, value, relativePath, description=None, dump=None, pull=None, replace=False, raiseError=True, ntrials=3): """ Dump a file using its value to the system and creates its attribute in the Repository with utc ...
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Dump a file using its value to the system and creates its attribute in the Repository with utc timestamp. :Parameters: #. value (object): The value of a file to dump and add to the repository. It is any python object or file. #. relativePath (str): The relative to...
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python
valid
53.051724
ryukinix/decorating
decorating/animation.py
https://github.com/ryukinix/decorating/blob/df78c3f87800205701704c0bc0fb9b6bb908ba7e/decorating/animation.py#L359-L364
def stop(cls): """Change back the normal stdout after the end""" if any(cls.streams): sys.stdout = cls.streams.pop(-1) else: sys.stdout = sys.__stdout__
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Change back the normal stdout after the end
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python
train
32.5
lreis2415/PyGeoC
pygeoc/TauDEM.py
https://github.com/lreis2415/PyGeoC/blob/9a92d1a229bb74298e3c57f27c97079980b5f729/pygeoc/TauDEM.py#L449-L465
def connectdown(np, p, acc, outlet, wtsd=None, workingdir=None, mpiexedir=None, exedir=None, log_file=None, runtime_file=None, hostfile=None): """Reads an ad8 contributing area file, identifies the location of the largest ad8 value as the outlet of the largest watershed""" # ...
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Reads an ad8 contributing area file, identifies the location of the largest ad8 value as the outlet of the largest watershed
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python
train
63.058824
gwpy/gwpy
gwpy/detector/channel.py
https://github.com/gwpy/gwpy/blob/7a92b917e7dd2d99b15895293a1fa1d66cdb210a/gwpy/detector/channel.py#L444-L479
def query_nds2(cls, name, host=None, port=None, connection=None, type=None): """Query an NDS server for channel information Parameters ---------- name : `str` name of requested channel host : `str`, optional name of NDS2 server. ...
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Query an NDS server for channel information Parameters ---------- name : `str` name of requested channel host : `str`, optional name of NDS2 server. port : `int`, optional port number for NDS2 connection connection : `nds2.connection` ...
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python
train
30.027778
tkarabela/pysubs2
pysubs2/ssaevent.py
https://github.com/tkarabela/pysubs2/blob/6439eb5159e6aa6b47e0f8e1d950e8bdd7c5341f/pysubs2/ssaevent.py#L105-L114
def shift(self, h=0, m=0, s=0, ms=0, frames=None, fps=None): """ Shift start and end times. See :meth:`SSAFile.shift()` for full description. """ delta = make_time(h=h, m=m, s=s, ms=ms, frames=frames, fps=fps) self.start += delta self.end += delta
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Shift start and end times. See :meth:`SSAFile.shift()` for full description.
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python
train
29.6
fastai/fastai
fastai/callbacks/tensorboard.py
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/callbacks/tensorboard.py#L63-L65
def _write_weight_histograms(self, iteration:int)->None: "Writes model weight histograms to Tensorboard." self.hist_writer.write(model=self.learn.model, iteration=iteration, tbwriter=self.tbwriter)
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Writes model weight histograms to Tensorboard.
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python
train
70.333333
PolyJIT/benchbuild
benchbuild/utils/run.py
https://github.com/PolyJIT/benchbuild/blob/9ad2ec54d96e97b642b1f06eddcbad9ba7aeaf58/benchbuild/utils/run.py#L260-L282
def exit_code_from_run_infos(run_infos: t.List[RunInfo]) -> int: """Generate a single exit code from a list of RunInfo objects. Takes a list of RunInfos and returns the exit code that is furthest away from 0. Args: run_infos (t.List[RunInfo]): [description] Returns: int: [descript...
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Generate a single exit code from a list of RunInfo objects. Takes a list of RunInfos and returns the exit code that is furthest away from 0. Args: run_infos (t.List[RunInfo]): [description] Returns: int: [description]
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python
train
24.695652
capitalone/giraffez
giraffez/cmd.py
https://github.com/capitalone/giraffez/blob/6b4d27eb1a1eaf188c6885c7364ef27e92b1b957/giraffez/cmd.py#L343-L385
def insert(self, table_name, rows, fields=None, delimiter=None, null='NULL', parse_dates=False, quotechar='"'): """ Load a text file into the specified :code:`table_name` or Insert Python :code:`list` rows into the specified :code:`table_name` :param str table_name: The name of the destination ...
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Load a text file into the specified :code:`table_name` or Insert Python :code:`list` rows into the specified :code:`table_name` :param str table_name: The name of the destination table :param list/str rows: A list of rows **or** the name of an input file. Each row must be a :code:`list` of ...
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python
test
60.534884
pantsbuild/pants
src/python/pants/pantsd/process_manager.py
https://github.com/pantsbuild/pants/blob/b72e650da0df685824ffdcc71988b8c282d0962d/src/python/pants/pantsd/process_manager.py#L397-L407
def purge_metadata(self, force=False): """Instance-based version of ProcessMetadataManager.purge_metadata_by_name() that checks for process liveness before purging metadata. :param bool force: If True, skip process liveness check before purging metadata. :raises: `ProcessManager.MetadataError` when OSE...
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Instance-based version of ProcessMetadataManager.purge_metadata_by_name() that checks for process liveness before purging metadata. :param bool force: If True, skip process liveness check before purging metadata. :raises: `ProcessManager.MetadataError` when OSError is encountered on metadata dir removal.
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python
train
51.363636
bwohlberg/sporco
sporco/admm/tvl2.py
https://github.com/bwohlberg/sporco/blob/8946a04331106f4e39904fbdf2dc7351900baa04/sporco/admm/tvl2.py#L219-L236
def xstep(self): r"""Minimise Augmented Lagrangian with respect to :math:`\mathbf{x}`. """ ngsit = 0 gsrrs = np.inf while gsrrs > self.opt['GSTol'] and ngsit < self.opt['MaxGSIter']: self.X = self.GaussSeidelStep(self.S, self.X, ...
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r"""Minimise Augmented Lagrangian with respect to :math:`\mathbf{x}`.
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python
train
37.277778
kenjoe41/ghostpaste
ghostpaste/ghostpaste.py
https://github.com/kenjoe41/ghostpaste/blob/7811878fb06c661eb0e7fe2cf5601a87aa858d30/ghostpaste/ghostpaste.py#L84-L92
def detect_lang(path): """Detect the language used in the given file.""" blob = FileBlob(path, os.getcwd()) if blob.is_text: print('Programming language of the file detected: {0}'.format(blob.language.name)) return blob.language.name else:#images, binary and what-have-you won't be pasted print('File not a tex...
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Detect the language used in the given file.
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python
train
38.333333
rstoneback/pysatMagVect
pysatMagVect/_core.py
https://github.com/rstoneback/pysatMagVect/blob/3fdc87ffbe05be58123f80f880d1237c2f34c7be/pysatMagVect/_core.py#L82-L110
def geodetic_to_ecef(latitude, longitude, altitude): """Convert WGS84 geodetic coordinates into ECEF Parameters ---------- latitude : float or array_like Geodetic latitude (degrees) longitude : float or array_like Geodetic longitude (degrees) altitude : float or array_like ...
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Convert WGS84 geodetic coordinates into ECEF Parameters ---------- latitude : float or array_like Geodetic latitude (degrees) longitude : float or array_like Geodetic longitude (degrees) altitude : float or array_like Geodetic Height (km) above WGS84 reference ellipsoid....
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python
train
31.241379
bibanon/BASC-py4chan
basc_py4chan/util.py
https://github.com/bibanon/BASC-py4chan/blob/88e4866d73853e1025e549fbbe9744e750522359/basc_py4chan/util.py#L16-L26
def clean_comment_body(body): """Returns given comment HTML as plaintext. Converts all HTML tags and entities within 4chan comments into human-readable text equivalents. """ body = _parser.unescape(body) body = re.sub(r'<a [^>]+>(.+?)</a>', r'\1', body) body = body.replace('<br>', '\n') ...
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Returns given comment HTML as plaintext. Converts all HTML tags and entities within 4chan comments into human-readable text equivalents.
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python
train
32.727273
sander76/aio-powerview-api
aiopvapi/helpers/powerview_util.py
https://github.com/sander76/aio-powerview-api/blob/08b6ac747aba9de19842359a981a7ff1292f5a6c/aiopvapi/helpers/powerview_util.py#L95-L103
async def activate_scene(self, scene_id: int): """Activate a scene :param scene_id: Scene id. :return: """ _scene = await self.get_scene(scene_id) await _scene.activate()
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Activate a scene :param scene_id: Scene id. :return:
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python
train
23.555556
ManiacalLabs/PixelWeb
pixelweb/bottle.py
https://github.com/ManiacalLabs/PixelWeb/blob/9eacbfd40a1d35011c2dcea15c303da9636c6b9e/pixelweb/bottle.py#L769-L774
def add_route(self, route): ''' Add a route object, but do not change the :data:`Route.app` attribute.''' self.routes.append(route) self.router.add(route.rule, route.method, route, name=route.name) if DEBUG: route.prepare()
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Add a route object, but do not change the :data:`Route.app` attribute.
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python
train
43.666667
intel-analytics/BigDL
pyspark/bigdl/optim/optimizer.py
https://github.com/intel-analytics/BigDL/blob/e9c19788285986ab789a2e2998f9a85d7524779f/pyspark/bigdl/optim/optimizer.py#L914-L923
def set_traindata(self, training_rdd, batch_size): """ Set new training dataset, for optimizer reuse :param training_rdd: the training dataset :param batch_size: training batch size :return: """ callBigDlFunc(self.bigdl_type, "setTrainData", self.value, ...
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Set new training dataset, for optimizer reuse :param training_rdd: the training dataset :param batch_size: training batch size :return:
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python
test
34.8
aws/aws-encryption-sdk-python
src/aws_encryption_sdk/internal/formatting/deserialize.py
https://github.com/aws/aws-encryption-sdk-python/blob/d182155d5fb1ef176d9e7d0647679737d5146495/src/aws_encryption_sdk/internal/formatting/deserialize.py#L127-L152
def _deserialize_encrypted_data_keys(stream): # type: (IO) -> Set[EncryptedDataKey] """Deserialize some encrypted data keys from a stream. :param stream: Stream from which to read encrypted data keys :return: Loaded encrypted data keys :rtype: set of :class:`EncryptedDataKey` """ (encrypted...
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Deserialize some encrypted data keys from a stream. :param stream: Stream from which to read encrypted data keys :return: Loaded encrypted data keys :rtype: set of :class:`EncryptedDataKey`
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python
train
47.269231
serge-sans-paille/pythran
pythran/analyses/aliases.py
https://github.com/serge-sans-paille/pythran/blob/7e1b5af2dddfabc50bd2a977f0178be269b349b5/pythran/analyses/aliases.py#L127-L145
def visit_BoolOp(self, node): ''' Resulting node may alias to either operands: >>> from pythran import passmanager >>> pm = passmanager.PassManager('demo') >>> module = ast.parse('def foo(a, b): return a or b') >>> result = pm.gather(Aliases, module) >>> Aliases....
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Resulting node may alias to either operands: >>> from pythran import passmanager >>> pm = passmanager.PassManager('demo') >>> module = ast.parse('def foo(a, b): return a or b') >>> result = pm.gather(Aliases, module) >>> Aliases.dump(result, filter=ast.BoolOp) (a or b) =...
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python
train
37.894737
raamana/mrivis
mrivis/workflow.py
https://github.com/raamana/mrivis/blob/199ad096b8a1d825f69109e7218a81b2f1cec756/mrivis/workflow.py#L22-L107
def checkerboard(img_spec1=None, img_spec2=None, patch_size=10, view_set=(0, 1, 2), num_slices=(10,), num_rows=2, rescale_method='global', background_threshold=0.05, annot=None, ...
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Checkerboard mixer. Parameters ---------- img_spec1 : str or nibabel image-like object MR image (or path to one) to be visualized img_spec2 : str or nibabel image-like object MR image (or path to one) to be visualized patch_size : int or list or (int, int) or None size of ...
[ "Checkerboard", "mixer", "." ]
python
train
36.511628
pydanny/django-tagging-ext
tagging_ext/views.py
https://github.com/pydanny/django-tagging-ext/blob/a25a79ddcd760c5ab272713178f40fedd9146b41/tagging_ext/views.py#L37-L82
def index(request, template_name="tagging_ext/index.html", min_size=0,limit=10): """ min_size: Smallest size count accepted for a tag order_by: asc or desc by count limit: maximum number of tags to display TODO: convert the hand-written query to an ORM call. Right now I kno...
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min_size: Smallest size count accepted for a tag order_by: asc or desc by count limit: maximum number of tags to display TODO: convert the hand-written query to an ORM call. Right now I know this works with Sqlite3 and PostGreSQL.
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python
train
26.347826
fuzeman/trakt.py
trakt/objects/show.py
https://github.com/fuzeman/trakt.py/blob/14c6b72e3c13ea2975007aeac0c01ad2222b67f3/trakt/objects/show.py#L138-L148
def episodes(self): """Return a flat episode iterator. :returns: Iterator :code:`((season_num, episode_num), Episode)` :rtype: iterator """ for sk, season in iteritems(self.seasons): # Yield each episode in season for ek, episode in iteritems(season.epis...
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Return a flat episode iterator. :returns: Iterator :code:`((season_num, episode_num), Episode)` :rtype: iterator
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python
train
32.363636
bunq/sdk_python
bunq/sdk/model/generated/endpoint.py
https://github.com/bunq/sdk_python/blob/da6c9b83e6d83ee8062617f53c6eb7293c0d863d/bunq/sdk/model/generated/endpoint.py#L1494-L1516
def get(cls, attachment_public_uuid, custom_headers=None): """ Get a specific attachment's metadata through its UUID. The Content-Type header of the response will describe the MIME type of the attachment file. :type api_context: context.ApiContext :type attachment_public...
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Get a specific attachment's metadata through its UUID. The Content-Type header of the response will describe the MIME type of the attachment file. :type api_context: context.ApiContext :type attachment_public_uuid: str :type custom_headers: dict[str, str]|None :rtype: B...
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python
train
36.478261
OCHA-DAP/hdx-python-api
src/hdx/data/hdxobject.py
https://github.com/OCHA-DAP/hdx-python-api/blob/212440f54f73805826a16db77dbcb6033b18a313/src/hdx/data/hdxobject.py#L365-L383
def _addupdate_hdxobject(self, hdxobjects, id_field, new_hdxobject): # type: (List[HDXObjectUpperBound], str, HDXObjectUpperBound) -> HDXObjectUpperBound """Helper function to add a new HDX object to a supplied list of HDX objects or update existing metadata if the object already exists in the l...
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Helper function to add a new HDX object to a supplied list of HDX objects or update existing metadata if the object already exists in the list Args: hdxobjects (List[T <= HDXObject]): list of HDX objects to which to add new objects or update existing ones id_field (str): Field o...
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python
train
51.789474
sublee/zeronimo
zeronimo/helpers.py
https://github.com/sublee/zeronimo/blob/b216638232932718d2cbc5eabd870c8f5b5e83fb/zeronimo/helpers.py#L42-L71
def make_repr(obj, params=None, keywords=None, data=None, name=None, reprs=None): """Generates a string of object initialization code style. It is useful for custom __repr__ methods:: class Example(object): def __init__(self, param, keyword=None): self.param = p...
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Generates a string of object initialization code style. It is useful for custom __repr__ methods:: class Example(object): def __init__(self, param, keyword=None): self.param = param self.keyword = keyword def __repr__(self): return make_r...
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python
test
32.266667
aiven/pghoard
pghoard/transfer.py
https://github.com/aiven/pghoard/blob/2994165d4ef3ff7a5669a2527346bcbfb5b3bd8a/pghoard/transfer.py#L80-L101
def transmit_metrics(self): """ Keep metrics updated about how long time ago each filetype was successfully uploaded. Transmits max once per ten seconds, regardless of how many threads are running. """ global _last_stats_transmit_time # pylint: disable=global-statement w...
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Keep metrics updated about how long time ago each filetype was successfully uploaded. Transmits max once per ten seconds, regardless of how many threads are running.
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python
train
46.045455
AguaClara/aguaclara
aguaclara/research/floc_model.py
https://github.com/AguaClara/aguaclara/blob/8dd4e734768b166a7fc2b60388a24df2f93783fc/aguaclara/research/floc_model.py#L505-L513
def dens_floc(ConcAl, ConcClay, DIM_FRACTAL, DiamTarget, coag, material, Temp): """Calculate floc density as a function of size.""" WaterDensity = pc.density_water(Temp).magnitude return ((dens_floc_init(ConcAl, ConcClay, coag, material).magnitude - WaterDensity ) * (ma...
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Calculate floc density as a function of size.
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python
train
44.555556
clalancette/pycdlib
pycdlib/eltorito.py
https://github.com/clalancette/pycdlib/blob/1e7b77a809e905d67dc71e12d70e850be26b6233/pycdlib/eltorito.py#L218-L235
def new(self, platform_id): # type: (int) -> None ''' A method to create a new El Torito Validation Entry. Parameters: platform_id - The platform ID to set for this validation entry. Returns: Nothing. ''' if self._initialized: raise ...
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A method to create a new El Torito Validation Entry. Parameters: platform_id - The platform ID to set for this validation entry. Returns: Nothing.
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python
train
35.333333
OpenGov/python_data_wrap
datawrap/listwrap.py
https://github.com/OpenGov/python_data_wrap/blob/7de38bb30d7a500adc336a4a7999528d753e5600/datawrap/listwrap.py#L463-L476
def compress_ranges_to_lists(self): ''' Converts the internal dimension ranges on lists into list of the restricted size. Thus all dimension rules are applied to all dimensions of the list wrapper and returned as a list (of lists). ''' clist = [] for elem ...
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Converts the internal dimension ranges on lists into list of the restricted size. Thus all dimension rules are applied to all dimensions of the list wrapper and returned as a list (of lists).
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python
train
35.785714
cocaine/cocaine-tools
cocaine/tools/dispatch.py
https://github.com/cocaine/cocaine-tools/blob/d8834f8e04ca42817d5f4e368d471484d4b3419f/cocaine/tools/dispatch.py#L425-L451
def info(name, m, p, b, w, **kwargs): """ Show information about cocaine runtime. Return json-like string with information about cocaine-runtime. If the name option is not specified, shows information about all applications. Flags can be specified for fine-grained control of the output verbosity. ...
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Show information about cocaine runtime. Return json-like string with information about cocaine-runtime. If the name option is not specified, shows information about all applications. Flags can be specified for fine-grained control of the output verbosity.
[ "Show", "information", "about", "cocaine", "runtime", "." ]
python
train
26.962963
wbond/asn1crypto
asn1crypto/util.py
https://github.com/wbond/asn1crypto/blob/ecda20176f55d37021cbca1f6da9083a8e491197/asn1crypto/util.py#L295-L320
def replace(self, year=None, month=None, day=None): """ Returns a new datetime.date or asn1crypto.util.extended_date object with the specified components replaced :return: A datetime.date or asn1crypto.util.extended_date object """ if year is None: ...
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Returns a new datetime.date or asn1crypto.util.extended_date object with the specified components replaced :return: A datetime.date or asn1crypto.util.extended_date object
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python
train
22.961538
elyase/masstable
masstable/masstable.py
https://github.com/elyase/masstable/blob/3eb72b22cd3337bc5c6bb95bb7bb73fdbe6ae9e2/masstable/masstable.py#L500-L507
def ds2p(self): """Calculates the derivative of the neutron separation energies: ds2n(Z,A) = s2n(Z,A) - s2n(Z,A+2) """ idx = [(x[0] + 2, x[1]) for x in self.df.index] values = self.s2p.values - self.s2p.loc[idx].values return Table(df=pd.Series(values, index=self.df.inde...
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Calculates the derivative of the neutron separation energies: ds2n(Z,A) = s2n(Z,A) - s2n(Z,A+2)
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python
test
44.125
googleapis/google-cloud-python
core/google/cloud/_http.py
https://github.com/googleapis/google-cloud-python/blob/85e80125a59cb10f8cb105f25ecc099e4b940b50/core/google/cloud/_http.py#L194-L221
def _do_request( self, method, url, headers, data, target_object ): # pylint: disable=unused-argument """Low-level helper: perform the actual API request over HTTP. Allows batch context managers to override and defer a request. :type method: str :param method: The HTTP me...
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Low-level helper: perform the actual API request over HTTP. Allows batch context managers to override and defer a request. :type method: str :param method: The HTTP method to use in the request. :type url: str :param url: The URL to send the request to. :type headers...
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python
train
33.5
alvinwan/TexSoup
TexSoup/data.py
https://github.com/alvinwan/TexSoup/blob/63323ed71510fd2351102b8c36660a3b7703cead/TexSoup/data.py#L366-L384
def count(self, name=None, **attrs): r"""Number of descendants matching criteria. :param Union[None,str] name: name of LaTeX expression :param attrs: LaTeX expression attributes, such as item text. :return: number of matching expressions :rtype: int >>> from TexSoup imp...
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r"""Number of descendants matching criteria. :param Union[None,str] name: name of LaTeX expression :param attrs: LaTeX expression attributes, such as item text. :return: number of matching expressions :rtype: int >>> from TexSoup import TexSoup >>> soup = TexSoup(r''' ...
[ "r", "Number", "of", "descendants", "matching", "criteria", "." ]
python
train
30.684211
joealcorn/laboratory
laboratory/experiment.py
https://github.com/joealcorn/laboratory/blob/e7af560c69d9dbb8f8cf4ca93c3c03523f8fb83d/laboratory/experiment.py#L40-L65
def decorator(cls, candidate, *exp_args, **exp_kwargs): ''' Decorate a control function in order to conduct an experiment when called. :param callable candidate: your candidate function :param iterable exp_args: positional arguments passed to :class:`Experiment` :param dict exp_...
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Decorate a control function in order to conduct an experiment when called. :param callable candidate: your candidate function :param iterable exp_args: positional arguments passed to :class:`Experiment` :param dict exp_kwargs: keyword arguments passed to :class:`Experiment` Usage:: ...
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python
train
35.615385
ktbyers/netmiko
netmiko/paloalto/paloalto_panos.py
https://github.com/ktbyers/netmiko/blob/54e6116c0b4664de2123081937e0a9a27bdfdfea/netmiko/paloalto/paloalto_panos.py#L164-L167
def send_command(self, *args, **kwargs): """Palo Alto requires an extra delay""" kwargs["delay_factor"] = kwargs.get("delay_factor", 2.5) return super(PaloAltoPanosBase, self).send_command(*args, **kwargs)
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Palo Alto requires an extra delay
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python
train
56.5
SpriteLink/NIPAP
nipap-www/nipapwww/controllers/pool.py
https://github.com/SpriteLink/NIPAP/blob/f96069f11ab952d80b13cab06e0528f2d24b3de9/nipap-www/nipapwww/controllers/pool.py#L52-L79
def edit(self, id): """ Edit a pool. """ c.pool = Pool.get(int(id)) c.prefix_list = Prefix.list({ 'pool_id': c.pool.id }) c.prefix = '' # save changes to NIPAP if request.method == 'POST': c.pool.name = request.params['name'] c.pool.descr...
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Edit a pool.
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python
train
39.107143
atlassian-api/atlassian-python-api
atlassian/service_desk.py
https://github.com/atlassian-api/atlassian-python-api/blob/540d269905c3e7547b666fe30c647b2d512cf358/atlassian/service_desk.py#L395-L413
def add_attachment(self, issue_id_or_key, temp_attachment_id, public=True, comment=None): """ Adds temporary attachment that were created using attach_temporary_file function to a customer request :param issue_id_or_key: str :param temp_attachment_id: str, ID from result attach_temporar...
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Adds temporary attachment that were created using attach_temporary_file function to a customer request :param issue_id_or_key: str :param temp_attachment_id: str, ID from result attach_temporary_file function :param public: bool (default is True) :param comment: str (default is None) ...
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python
train
42.421053
tensorflow/tensor2tensor
tensor2tensor/utils/expert_utils.py
https://github.com/tensorflow/tensor2tensor/blob/272500b6efe353aeb638d2745ed56e519462ca31/tensor2tensor/utils/expert_utils.py#L810-L833
def combine(self, expert_out, multiply_by_gates=True): """Sum together the expert output, weighted by the gates. The slice corresponding to a particular batch element `b` is computed as the sum over all experts `i` of the expert output, weighted by the corresponding gate values. If `multiply_by_gates`...
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Sum together the expert output, weighted by the gates. The slice corresponding to a particular batch element `b` is computed as the sum over all experts `i` of the expert output, weighted by the corresponding gate values. If `multiply_by_gates` is set to False, the gate values are ignored. Args: ...
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python
train
40.791667
lvieirajr/mongorest
mongorest/collection.py
https://github.com/lvieirajr/mongorest/blob/00f4487ded33254434bc51ff09d48c7a936bd465/mongorest/collection.py#L307-L312
def update_one(cls, filter, update, upsert=False): """ Updates a document that passes the filter with the update value Will upsert a new document if upsert=True and no document is filtered """ return cls.collection.update_one(filter, update, upsert).raw_result
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Updates a document that passes the filter with the update value Will upsert a new document if upsert=True and no document is filtered
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python
train
49.166667
mlperf/training
reinforcement/tensorflow/minigo/oneoffs/heatmap.py
https://github.com/mlperf/training/blob/1c6ae725a81d15437a2b2df05cac0673fde5c3a4/reinforcement/tensorflow/minigo/oneoffs/heatmap.py#L45-L85
def eval_policy(eval_positions): """Evaluate all positions with all models save the policy heatmaps as CSVs CSV name is "heatmap-<position_name>-<model-index>.csv" CSV format is: model number, value network output, policy network outputs position_name is taken from the SGF file Policy network outp...
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python
train
37.097561
gmr/rejected
rejected/mcp.py
https://github.com/gmr/rejected/blob/610a3e1401122ecb98d891b6795cca0255e5b044/rejected/mcp.py#L616-L626
def setup_consumers(self): """Iterate through each consumer in the configuration and kick off the minimal amount of processes, setting up the runtime data as well. """ if not self.consumer_cfg: LOGGER.warning('No consumers are configured') for name in self.consumer_c...
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Iterate through each consumer in the configuration and kick off the minimal amount of processes, setting up the runtime data as well.
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python
train
44.181818
CLARIAH/grlc
src/gquery.py
https://github.com/CLARIAH/grlc/blob/f5664e34f039010c00ef8ebb69917c05e8ce75d7/src/gquery.py#L196-L209
def get_enumeration(rq, v, endpoint, metadata={}, auth=None): """ Returns a list of enumerated values for variable 'v' in query 'rq' """ # glogger.debug("Metadata before processing enums: {}".format(metadata)) # We only fire the enum filling queries if indicated by the query metadata if 'enumera...
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Returns a list of enumerated values for variable 'v' in query 'rq'
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python
train
40
uploadcare/pyuploadcare
pyuploadcare/api_resources.py
https://github.com/uploadcare/pyuploadcare/blob/cefddc0306133a71e37b18e8700df5948ef49b37/pyuploadcare/api_resources.py#L361-L391
def upload(cls, file_obj, store=None): """Uploads a file and returns ``File`` instance. Args: - file_obj: file object to upload to - store (Optional[bool]): Should the file be automatically stored upon upload. Defaults to None. - False - do not st...
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Uploads a file and returns ``File`` instance. Args: - file_obj: file object to upload to - store (Optional[bool]): Should the file be automatically stored upon upload. Defaults to None. - False - do not store file - True - store file (can ...
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python
test
29.419355
appknox/google-chartwrapper
GChartWrapper/GChart.py
https://github.com/appknox/google-chartwrapper/blob/3769aecbef6c83b6cd93ee72ece478ffe433ac57/GChartWrapper/GChart.py#L331-L341
def line(self, *args): """ Called one at a time for each dataset args are of the form:: <data set n line thickness>, <length of line segment>, <length of blank segment> APIPARAM: chls """ self.lines.append(','.join(['%.1f'%x for x in ma...
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Called one at a time for each dataset args are of the form:: <data set n line thickness>, <length of line segment>, <length of blank segment> APIPARAM: chls
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python
test
31.454545