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jcushman/pdfquery
pdfquery/pdfquery.py
https://github.com/jcushman/pdfquery/blob/f1c05d15e0c1b7c523a0971bc89b5610d8560f79/pdfquery/pdfquery.py#L114-L146
def smart_unicode_decode(encoded_string): """ Given an encoded string of unknown format, detect the format with chardet and return the unicode version. Example input from bug #11: ('\xfe\xff\x00I\x00n\x00s\x00p\x00e\x00c\x00t\x00i\x00o\x00n\x00' '\x00R\x00e\x00p\x00o...
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Given an encoded string of unknown format, detect the format with chardet and return the unicode version. Example input from bug #11: ('\xfe\xff\x00I\x00n\x00s\x00p\x00e\x00c\x00t\x00i\x00o\x00n\x00' '\x00R\x00e\x00p\x00o\x00r\x00t\x00 \x00v\x002\x00.\x002')
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python
train
37.69697
hirmeos/entity-fishing-client-python
nerd/nerd_client.py
https://github.com/hirmeos/entity-fishing-client-python/blob/cd5c6e10c6c4e653669e11d735d5773766986bda/nerd/nerd_client.py#L39-L133
def _process_query(self, query, prepared=False): """ Process query recursively, if the text is too long, it is split and processed bit a bit. Args: query (sdict): Text to be processed. prepared (bool): True when the query is ready to be submitted via POST req...
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Process query recursively, if the text is too long, it is split and processed bit a bit. Args: query (sdict): Text to be processed. prepared (bool): True when the query is ready to be submitted via POST request. Returns: str: Body ready to be subm...
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python
test
32.452632
tnkteja/myhelp
virtualEnvironment/lib/python2.7/site-packages/pip/_vendor/pkg_resources/__init__.py
https://github.com/tnkteja/myhelp/blob/fb3a4809d448ad14d5b2e6ddf2e7e89ad52b71cb/virtualEnvironment/lib/python2.7/site-packages/pip/_vendor/pkg_resources/__init__.py#L1328-L1337
def is_invalid_marker(cls, text): """ Validate text as a PEP 426 environment marker; return an exception if invalid or False otherwise. """ try: cls.evaluate_marker(text) except SyntaxError: return cls.normalize_exception(sys.exc_info()[1]) ...
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Validate text as a PEP 426 environment marker; return an exception if invalid or False otherwise.
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python
test
32.4
xnuinside/clifier
clifier/clifier.py
https://github.com/xnuinside/clifier/blob/3d704a30dc985bea3b876216accc53c19dc8b0df/clifier/clifier.py#L48-L57
def apply_defaults(self, commands): """ apply default settings to commands not static, shadow "self" in eval """ for command in commands: if 'action' in command and "()" in command['action']: command['action'] = eval("self.{}".format(command['action'])) ...
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apply default settings to commands not static, shadow "self" in eval
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python
valid
45.3
readbeyond/aeneas
aeneas/audiofile.py
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/audiofile.py#L607-L630
def write(self, file_path): """ Write the audio data to file. Return ``True`` on success, or ``False`` otherwise. :param string file_path: the path of the output file to be written :raises: :class:`~aeneas.audiofile.AudioFileNotInitializedError`: if the audio file is not initial...
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Write the audio data to file. Return ``True`` on success, or ``False`` otherwise. :param string file_path: the path of the output file to be written :raises: :class:`~aeneas.audiofile.AudioFileNotInitializedError`: if the audio file is not initialized yet .. versionadded:: 1.2.0
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python
train
47.25
dmlc/gluon-nlp
scripts/parsing/common/k_means.py
https://github.com/dmlc/gluon-nlp/blob/4b83eb6bcc8881e5f1081a3675adaa19fac5c0ba/scripts/parsing/common/k_means.py#L147-L155
def _reindex(self): """ Index every sentence into a cluster """ self._len2split_idx = {} last_split = -1 for split_idx, split in enumerate(self._splits): self._len2split_idx.update( dict(list(zip(list(range(last_split + 1, split)), [split_idx] ...
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Index every sentence into a cluster
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python
train
38.222222
iotile/coretools
iotilebuild/iotile/build/config/scons-local-3.0.1/SCons/Tool/FortranCommon.py
https://github.com/iotile/coretools/blob/2d794f5f1346b841b0dcd16c9d284e9bf2f3c6ec/iotilebuild/iotile/build/config/scons-local-3.0.1/SCons/Tool/FortranCommon.py#L218-L232
def add_f95_to_env(env): """Add Builders and construction variables for f95 to an Environment.""" try: F95Suffixes = env['F95FILESUFFIXES'] except KeyError: F95Suffixes = ['.f95'] #print("Adding %s to f95 suffixes" % F95Suffixes) try: F95PPSuffixes = env['F95PPFILESUFFIXES']...
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Add Builders and construction variables for f95 to an Environment.
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python
train
30.333333
log2timeline/dfvfs
dfvfs/helpers/source_scanner.py
https://github.com/log2timeline/dfvfs/blob/2b3ccd115f9901d89f383397d4a1376a873c83c4/dfvfs/helpers/source_scanner.py#L540-L582
def _ScanEncryptedVolumeNode(self, scan_context, scan_node): """Scans an encrypted volume node for supported formats. Args: scan_context (SourceScannerContext): source scanner context. scan_node (SourceScanNode): source scan node. Raises: BackEndError: if the scan node cannot be unlocked...
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Scans an encrypted volume node for supported formats. Args: scan_context (SourceScannerContext): source scanner context. scan_node (SourceScanNode): source scan node. Raises: BackEndError: if the scan node cannot be unlocked. ValueError: if the scan context or scan node is invalid.
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python
train
44.27907
Bogdanp/anom-py
anom/query.py
https://github.com/Bogdanp/anom-py/blob/519078b6d1570fa63c5f17cf98817c7bb5588136/anom/query.py#L46-L54
def batch_size(self): """int: The number of results to fetch per batch. Clamped to limit if limit is set and is smaller than the given batch size. """ batch_size = self.get("batch_size", DEFAULT_BATCH_SIZE) if self.limit is not None: return min(self.limit, ba...
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int: The number of results to fetch per batch. Clamped to limit if limit is set and is smaller than the given batch size.
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python
train
38.555556
markokr/rarfile
dumprar.py
https://github.com/markokr/rarfile/blob/2704344e8d7a1658c96c8ed8f449d7ba01bedea3/dumprar.py#L358-L366
def check_crc(f, inf, desc): """Compare result crc to expected value. """ exp = inf._md_expect if exp is None: return ucrc = f._md_context.digest() if ucrc != exp: print('crc error - %s - exp=%r got=%r' % (desc, exp, ucrc))
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Compare result crc to expected value.
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python
train
28.333333
bio2bel/bio2bel
src/bio2bel/cli.py
https://github.com/bio2bel/bio2bel/blob/d80762d891fa18b248709ff0b0f97ebb65ec64c2/src/bio2bel/cli.py#L236-L255
def write(connection, skip, directory, force): """Write all as BEL.""" os.makedirs(directory, exist_ok=True) from .manager.bel_manager import BELManagerMixin import pybel for idx, name, manager in _iterate_managers(connection, skip): if not isinstance(manager, BELManagerMixin): c...
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Write all as BEL.
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python
valid
39.25
gmichaeljaison/cv-utils
cv_utils/bbox.py
https://github.com/gmichaeljaison/cv-utils/blob/a8251c870165a7428d8c468a6436aa41d0cf7c09/cv_utils/bbox.py#L121-L131
def overlaps(self, box, th=0.0001): """ Check whether this box and given box overlaps at least by given threshold. :param box: Box to compare with :param th: Threshold above which overlapping should be considered :returns: True if overlaps """ int_box = Box.inter...
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Check whether this box and given box overlaps at least by given threshold. :param box: Box to compare with :param th: Threshold above which overlapping should be considered :returns: True if overlaps
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python
train
41.909091
lk-geimfari/mimesis
mimesis/providers/date.py
https://github.com/lk-geimfari/mimesis/blob/4b16ee7a8dba6281a904654a88dbb4b052869fc5/mimesis/providers/date.py#L161-L172
def time(self) -> Time: """Generate a random time object. :return: ``datetime.time`` object. """ random_time = time( self.random.randint(0, 23), self.random.randint(0, 59), self.random.randint(0, 59), self.random.randint(0, 999999), ...
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Generate a random time object. :return: ``datetime.time`` object.
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python
train
28.25
bigchaindb/bigchaindb
bigchaindb/utils.py
https://github.com/bigchaindb/bigchaindb/blob/835fdfcf598918f76139e3b88ee33dd157acaaa7/bigchaindb/utils.py#L107-L133
def condition_details_has_owner(condition_details, owner): """Check if the public_key of owner is in the condition details as an Ed25519Fulfillment.public_key Args: condition_details (dict): dict with condition details owner (str): base58 public key of owner Returns: bool: True...
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Check if the public_key of owner is in the condition details as an Ed25519Fulfillment.public_key Args: condition_details (dict): dict with condition details owner (str): base58 public key of owner Returns: bool: True if the public key is found in the condition details, False otherw...
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python
train
34.185185
saltstack/salt
salt/modules/azurearm_network.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/azurearm_network.py#L853-L877
def virtual_networks_list_all(**kwargs): ''' .. versionadded:: 2019.2.0 List all virtual networks within a subscription. CLI Example: .. code-block:: bash salt-call azurearm_network.virtual_networks_list_all ''' result = {} netconn = __utils__['azurearm.get_client']('network...
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.. versionadded:: 2019.2.0 List all virtual networks within a subscription. CLI Example: .. code-block:: bash salt-call azurearm_network.virtual_networks_list_all
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python
train
25.76
gwastro/pycbc
pycbc/events/triggers.py
https://github.com/gwastro/pycbc/blob/7a64cdd104d263f1b6ea0b01e6841837d05a4cb3/pycbc/events/triggers.py#L259-L300
def get_param(par, args, m1, m2, s1z, s2z): """ Helper function Parameters ---------- par : string Name of parameter to calculate args : Namespace object returned from ArgumentParser instance Calling code command line options, used for f_lower value m1 : float or array of fl...
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Helper function Parameters ---------- par : string Name of parameter to calculate args : Namespace object returned from ArgumentParser instance Calling code command line options, used for f_lower value m1 : float or array of floats First binary component mass (etc.) Ret...
[ "Helper", "function" ]
python
train
36.619048
polysquare/jobstamps
jobstamps/jobstamp_cmd_main.py
https://github.com/polysquare/jobstamps/blob/49b4dec93b38c9db55643226a9788c675a53ef25/jobstamps/jobstamp_cmd_main.py#L36-L52
def _run_cmd(cmd): """Run command specified by :cmd: and return stdout, stderr and code.""" if not os.path.exists(cmd[0]): cmd[0] = shutil.which(cmd[0]) assert cmd[0] is not None shebang_parts = parseshebang.parse(cmd[0]) proc = subprocess.Popen(shebang_parts + cmd, ...
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Run command specified by :cmd: and return stdout, stderr and code.
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python
train
31.235294
non-Jedi/gyr
gyr/resources.py
https://github.com/non-Jedi/gyr/blob/9f7bfe033b9d3bbfd3a9e8aea02e35526b53125e/gyr/resources.py#L61-L81
def on_put(self, request, response, txn_id=None): """Responds to PUT request containing events.""" response.body = "{}" # Check whether repeat txn_id if not self._is_new(txn_id): response.status = falcon.HTTP_200 return request.context["body"] = request....
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Responds to PUT request containing events.
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python
train
35.619048
cherrypy/cheroot
cheroot/server.py
https://github.com/cherrypy/cheroot/blob/2af3b1798d66da697957480d3a8b4831a405770b/cheroot/server.py#L541-L582
def readline(self, size=None): """Read a single line from rfile buffer and return it. Args: size (int): minimum amount of data to read Returns: bytes: One line from rfile. """ data = EMPTY if size == 0: return data while Tr...
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Read a single line from rfile buffer and return it. Args: size (int): minimum amount of data to read Returns: bytes: One line from rfile.
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python
train
29.690476
bwhite/hadoopy
hadoopy/thirdparty/pyinstaller/PyInstaller/lib/altgraph/ObjectGraph.py
https://github.com/bwhite/hadoopy/blob/ff39b4e6d4e6efaf1f571cf0f2c0e0d7ab28c2d6/hadoopy/thirdparty/pyinstaller/PyInstaller/lib/altgraph/ObjectGraph.py#L148-L158
def createReference(self, fromnode, tonode, edge_data=None): """ Create a reference from fromnode to tonode """ if fromnode is None: fromnode = self fromident, toident = self.getIdent(fromnode), self.getIdent(tonode) if fromident is None or toident is None: ...
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Create a reference from fromnode to tonode
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python
train
42.090909
OSSOS/MOP
src/jjk/preproc/scrample.py
https://github.com/OSSOS/MOP/blob/94f91d32ad5ec081d5a1ebd67604a838003465af/src/jjk/preproc/scrample.py#L89-L266
def searchTriples(filenames,plant=False): """Given a list of exposure numbers, find all the KBOs in that set of exposures""" print filenames if opt.none : return import MOPfits,os import MOPdbaccess import string import os.path import pyfits if len(filenames)!=3: ...
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Given a list of exposure numbers, find all the KBOs in that set of exposures
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python
train
28.258427
esterhui/pypu
pypu/service_flickr.py
https://github.com/esterhui/pypu/blob/cc3e259d59f024c2c4c0fbb9c8a1547e51de75ec/pypu/service_flickr.py#L574-L608
def _remove_media(self,directory,files=None): """Removes specified files from flickr""" # Connect if we aren't already if not self._connectToFlickr(): logger.error("%s - Couldn't connect to flickr") return False db=self._loadDB(directory) # If no files gi...
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Removes specified files from flickr
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python
train
33.6
JdeRobot/base
src/drivers/MAVLinkServer/MAVProxy/modules/lib/mp_menu.py
https://github.com/JdeRobot/base/blob/303b18992785b2fe802212f2d758a60873007f1f/src/drivers/MAVLinkServer/MAVProxy/modules/lib/mp_menu.py#L201-L205
def _append(self, menu): '''append this menu item to a menu''' from wx_loader import wx menu.AppendMenu(-1, self.name, self.wx_menu())
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append this menu item to a menu
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python
train
31
cjdrake/pyeda
pyeda/boolalg/bfarray.py
https://github.com/cjdrake/pyeda/blob/554ee53aa678f4b61bcd7e07ba2c74ddc749d665/pyeda/boolalg/bfarray.py#L680-L694
def to_uint(self): """Convert vector to an unsigned integer, if possible. This is only useful for arrays filled with zero/one entries. """ num = 0 for i, f in enumerate(self._items): if f.is_zero(): pass elif f.is_one(): nu...
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Convert vector to an unsigned integer, if possible. This is only useful for arrays filled with zero/one entries.
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python
train
31.466667
linkedin/luminol
src/luminol/modules/time_series.py
https://github.com/linkedin/luminol/blob/42e4ab969b774ff98f902d064cb041556017f635/src/luminol/modules/time_series.py#L248-L272
def smooth(self, smoothing_factor): """ return a new time series which is a exponential smoothed version of the original data series. soomth forward once, backward once, and then take the average. :param float smoothing_factor: smoothing factor :return: :class:`TimeSeries` objec...
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return a new time series which is a exponential smoothed version of the original data series. soomth forward once, backward once, and then take the average. :param float smoothing_factor: smoothing factor :return: :class:`TimeSeries` object.
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python
train
40.28
pantsbuild/pants
src/python/pants/pantsd/pailgun_server.py
https://github.com/pantsbuild/pants/blob/b72e650da0df685824ffdcc71988b8c282d0962d/src/python/pants/pantsd/pailgun_server.py#L56-L58
def _run_pants(self, sock, arguments, environment): """Execute a given run with a pants runner.""" self.server.runner_factory(sock, arguments, environment).run()
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Execute a given run with a pants runner.
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python
train
55.666667
ff0000/scarlet
scarlet/cms/actions.py
https://github.com/ff0000/scarlet/blob/6c37befd810916a2d7ffff2cdb2dab57bcb6d12e/scarlet/cms/actions.py#L421-L428
def get_object_url(self): """ Returns the url to link to the object The get_view_url will be called on the current bundle using 'edit` as the view name. """ return self.bundle.get_view_url('edit', self.request.user, {}, self.kwargs)
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Returns the url to link to the object The get_view_url will be called on the current bundle using 'edit` as the view name.
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python
train
39.125
humilis/humilis-lambdautils
lambdautils/state.py
https://github.com/humilis/humilis-lambdautils/blob/58f75eb5ace23523c283708d56a9193181ea7e8e/lambdautils/state.py#L78-L134
def _get_secret_from_vault( key, environment=None, stage=None, namespace=None, wait_exponential_multiplier=50, wait_exponential_max=5000, stop_max_delay=10000): """Retrieves a secret from the secrets vault.""" # Get the encrypted secret from DynamoDB table_name = _secrets_table_name(...
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Retrieves a secret from the secrets vault.
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python
train
31.368421
ga4gh/ga4gh-server
ga4gh/server/datamodel/variants.py
https://github.com/ga4gh/ga4gh-server/blob/1aa18922ef136db8604f6f098cb1732cba6f2a76/ga4gh/server/datamodel/variants.py#L484-L496
def populateFromFile(self, dataUrls, indexFiles): """ Populates this variant set using the specified lists of data files and indexes. These must be in the same order, such that the jth index file corresponds to the jth data file. """ assert len(dataUrls) == len(indexFiles...
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Populates this variant set using the specified lists of data files and indexes. These must be in the same order, such that the jth index file corresponds to the jth data file.
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python
train
45.384615
TriOptima/tri.declarative
lib/tri/declarative/__init__.py
https://github.com/TriOptima/tri.declarative/blob/13d90d4c2a10934e37a4139e63d51a859fb3e303/lib/tri/declarative/__init__.py#L704-L715
def getattr_path(obj, path): """ Get an attribute path, as defined by a string separated by '__'. getattr_path(foo, 'a__b__c') is roughly equivalent to foo.a.b.c but will short circuit to return None if something on the path is None. """ path = path.split('__') for name in path: obj ...
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Get an attribute path, as defined by a string separated by '__'. getattr_path(foo, 'a__b__c') is roughly equivalent to foo.a.b.c but will short circuit to return None if something on the path is None.
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python
train
32.666667
saltstack/salt
salt/modules/boto_iam.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/boto_iam.py#L1123-L1145
def get_role_policy(role_name, policy_name, region=None, key=None, keyid=None, profile=None): ''' Get a role policy. CLI Example: .. code-block:: bash salt myminion boto_iam.get_role_policy myirole mypolicy ''' conn = _get_conn(region=region, key=key, keyid=keyid, ...
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Get a role policy. CLI Example: .. code-block:: bash salt myminion boto_iam.get_role_policy myirole mypolicy
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python
train
32.565217
callowayproject/Calloway
calloway/apps/django_ext/templatetags/listutil.py
https://github.com/callowayproject/Calloway/blob/d22e98d41fbd298ab6393ba7bd84a75528be9f81/calloway/apps/django_ext/templatetags/listutil.py#L77-L103
def partition_horizontal_twice(thelist, numbers): """ numbers is split on a comma to n and n2. Break a list into peices each peice alternating between n and n2 items long ``partition_horizontal_twice(range(14), "3,4")`` gives:: [[0, 1, 2], [3, 4, 5, 6], [7, 8, 9], ...
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numbers is split on a comma to n and n2. Break a list into peices each peice alternating between n and n2 items long ``partition_horizontal_twice(range(14), "3,4")`` gives:: [[0, 1, 2], [3, 4, 5, 6], [7, 8, 9], [10, 11, 12, 13]] Clear as mud?
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python
train
26.37037
Xion/taipan
taipan/objective/modifiers.py
https://github.com/Xion/taipan/blob/f333f0287c8bd0915182c7d5308e5f05ef0cca78/taipan/objective/modifiers.py#L50-L80
def abstract(class_): """Mark the class as _abstract_ base class, forbidding its instantiation. .. note:: Unlike other modifiers, ``@abstract`` can be applied to all Python classes, not just subclasses of :class:`Object`. .. versionadded:: 0.0.3 """ if not inspect.isclass(class_):...
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Mark the class as _abstract_ base class, forbidding its instantiation. .. note:: Unlike other modifiers, ``@abstract`` can be applied to all Python classes, not just subclasses of :class:`Object`. .. versionadded:: 0.0.3
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python
train
37.193548
manns/pyspread
pyspread/src/lib/vlc.py
https://github.com/manns/pyspread/blob/0e2fd44c2e0f06605efc3058c20a43a8c1f9e7e0/pyspread/src/lib/vlc.py#L5619-L5628
def libvlc_video_get_size(p_mi, num): '''Get the pixel dimensions of a video. @param p_mi: media player. @param num: number of the video (starting from, and most commonly 0). @return: px pixel width, py pixel height. ''' f = _Cfunctions.get('libvlc_video_get_size', None) or \ _Cfunction(...
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Get the pixel dimensions of a video. @param p_mi: media player. @param num: number of the video (starting from, and most commonly 0). @return: px pixel width, py pixel height.
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python
train
51.6
kejbaly2/metrique
metrique/utils.py
https://github.com/kejbaly2/metrique/blob/a10b076097441b7dde687949139f702f5c1e1b35/metrique/utils.py#L197-L227
def clear_stale_pids(pids, pid_dir='/tmp', prefix='', multi=False): 'check for and remove any pids which have no corresponding process' if isinstance(pids, (int, float, long)): pids = [pids] pids = str2list(pids, map_=unicode) procs = map(unicode, os.listdir('/proc')) running = [pid for pid ...
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check for and remove any pids which have no corresponding process
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python
train
34.935484
LionelR/pyair
pyair/stats.py
https://github.com/LionelR/pyair/blob/467e8a843ca9f882f8bb2958805b7293591996ad/pyair/stats.py#L31-L36
def mean(a, rep=0.75, **kwargs): """Compute the average along a 1D array like ma.mean, but with a representativity coefficient : if ma.count(a)/ma.size(a)>=rep, then the result is a masked value """ return rfunc(a, ma.mean, rep, **kwargs)
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Compute the average along a 1D array like ma.mean, but with a representativity coefficient : if ma.count(a)/ma.size(a)>=rep, then the result is a masked value
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python
valid
42.166667
ace0/pyrelic
pyrelic/vpopProfile.py
https://github.com/ace0/pyrelic/blob/f23d4e6586674675f72304d5938548267d6413bf/pyrelic/vpopProfile.py#L99-L132
def verifyG1(x, tTilde, y, pi, errorOnFail=True): """ Verifies a zero-knowledge proof where p \in G1. @errorOnFail: Raise an exception if the proof does not hold. """ # Unpack the proof p,c,u = pi # Verify types assertType(x, G1Element) assertType(tTilde, G2Element) assertType(y...
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Verifies a zero-knowledge proof where p \in G1. @errorOnFail: Raise an exception if the proof does not hold.
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python
train
23.117647
PmagPy/PmagPy
pmagpy/pmag.py
https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/pmagpy/pmag.py#L3994-L4047
def fisher_mean(data): """ Calculates the Fisher mean and associated parameter from a di_block Parameters ---------- di_block : a nested list of [dec,inc] or [dec,inc,intensity] Returns ------- fpars : dictionary containing the Fisher mean and statistics dec : mean declination ...
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Calculates the Fisher mean and associated parameter from a di_block Parameters ---------- di_block : a nested list of [dec,inc] or [dec,inc,intensity] Returns ------- fpars : dictionary containing the Fisher mean and statistics dec : mean declination inc : mean inclination ...
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python
train
24.62963
apache/airflow
airflow/hooks/oracle_hook.py
https://github.com/apache/airflow/blob/b69c686ad8a0c89b9136bb4b31767257eb7b2597/airflow/hooks/oracle_hook.py#L184-L231
def bulk_insert_rows(self, table, rows, target_fields=None, commit_every=5000): """ A performant bulk insert for cx_Oracle that uses prepared statements via `executemany()`. For best performance, pass in `rows` as an iterator. :param table: target Oracle table, use dot notation ...
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A performant bulk insert for cx_Oracle that uses prepared statements via `executemany()`. For best performance, pass in `rows` as an iterator. :param table: target Oracle table, use dot notation to target a specific database :type table: str :param rows: the rows to ...
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python
test
43.895833
bcbio/bcbio-nextgen
bcbio/qc/chipseq.py
https://github.com/bcbio/bcbio-nextgen/blob/6a9348c0054ccd5baffd22f1bb7d0422f6978b20/bcbio/qc/chipseq.py#L34-L47
def chipqc(bam_file, sample, out_dir): """Attempt code to run ChIPQC bioconductor packate in one sample""" sample_name = dd.get_sample_name(sample) logger.warning("ChIPQC is unstable right now, if it breaks, turn off the tool.") if utils.file_exists(out_dir): return _get_output(out_dir) with...
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Attempt code to run ChIPQC bioconductor packate in one sample
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python
train
47.357143
vmware/pyvmomi
pyVmomi/SoapAdapter.py
https://github.com/vmware/pyvmomi/blob/3ffcb23bf77d757175c0d5216ba9a25345d824cd/pyVmomi/SoapAdapter.py#L276-L281
def _NSPrefix(self, ns): """ Get xml ns prefix. self.nsMap must be set """ if ns == self.defaultNS: return '' prefix = self.nsMap[ns] return prefix and prefix + ':' or ''
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Get xml ns prefix. self.nsMap must be set
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python
train
33
spyder-ide/spyder
spyder/plugins/editor/widgets/editor.py
https://github.com/spyder-ide/spyder/blob/f76836ce1b924bcc4efd3f74f2960d26a4e528e0/spyder/plugins/editor/widgets/editor.py#L128-L158
def update_queue(self): """Update queue""" started = 0 for parent_id, threadlist in list(self.started_threads.items()): still_running = [] for thread in threadlist: if thread.isFinished(): end_callback = self.end_callbacks.pop(id...
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Update queue
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python
train
46.032258
blockstack/blockstack-core
blockstack/lib/subdomains.py
https://github.com/blockstack/blockstack-core/blob/1dcfdd39b152d29ce13e736a6a1a0981401a0505/blockstack/lib/subdomains.py#L1130-L1150
def get_subdomain_entry(self, fqn, accepted=True, cur=None): """ Given a fully-qualified subdomain, get its (latest) subdomain record. Raises SubdomainNotFound if there is no such subdomain """ get_cmd = "SELECT * FROM {} WHERE fully_qualified_subdomain=? {} ORDER BY sequence DES...
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Given a fully-qualified subdomain, get its (latest) subdomain record. Raises SubdomainNotFound if there is no such subdomain
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python
train
37.333333
bram85/topydo
topydo/lib/Recurrence.py
https://github.com/bram85/topydo/blob/b59fcfca5361869a6b78d4c9808c7c6cd0a18b58/topydo/lib/Recurrence.py#L30-L73
def advance_recurring_todo(p_todo, p_offset=None, p_strict=False): """ Given a Todo item, return a new instance of a Todo item with the dates shifted according to the recurrence rule. Strict means that the real due date is taken as a offset, not today or a future date to determine the offset. ...
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Given a Todo item, return a new instance of a Todo item with the dates shifted according to the recurrence rule. Strict means that the real due date is taken as a offset, not today or a future date to determine the offset. When the todo item has no due date, then the date is used passed by the cal...
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python
train
28.545455
ThreatConnect-Inc/tcex
tcex/tcex_ti_group.py
https://github.com/ThreatConnect-Inc/tcex/blob/dd4d7a1ef723af1561687120191886b9a2fd4b47/tcex/tcex_ti_group.py#L81-L104
def add_key_value(self, key, value): """Add custom field to Group object. .. note:: The key must be the exact name required by the batch schema. Example:: document = tcex.batch.group('Document', 'My Document') document.add_key_value('fileName', 'something.pdf') ...
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Add custom field to Group object. .. note:: The key must be the exact name required by the batch schema. Example:: document = tcex.batch.group('Document', 'My Document') document.add_key_value('fileName', 'something.pdf') Args: key (str): The field key to ...
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python
train
36.583333
tritemio/PyBroMo
pybromo/timestamps.py
https://github.com/tritemio/PyBroMo/blob/b75f82a4551ff37e7c7a7e6954c536451f3e6d06/pybromo/timestamps.py#L244-L266
def run_da(self, rs, overwrite=True, skip_existing=False, path=None, chunksize=None): """Compute timestamps for current populations.""" if path is None: path = str(self.S.store.filepath.parent) kwargs = dict(rs=rs, overwrite=overwrite, path=path, ...
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Compute timestamps for current populations.
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python
valid
43.826087
CygnusNetworks/pypureomapi
pypureomapi.py
https://github.com/CygnusNetworks/pypureomapi/blob/ff4459678ec023fd56e64ce518a86860efec26bf/pypureomapi.py#L224-L233
def consume(self, length): """ >>> OutBuffer().add(b"spam").consume(2).getvalue() == b"am" True @type length: int @returns: self """ self.buff = io.BytesIO(self.getvalue()[length:]) return self
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>>> OutBuffer().add(b"spam").consume(2).getvalue() == b"am" True @type length: int @returns: self
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python
train
20.1
calmjs/calmjs.parse
src/calmjs/parse/unparsers/walker.py
https://github.com/calmjs/calmjs.parse/blob/369f0ee346c5a84c4d5c35a7733a0e63b02eac59/src/calmjs/parse/unparsers/walker.py#L226-L365
def walk(dispatcher, node, definition=None): """ The default, standalone walk function following the standard argument ordering for the unparsing walkers. Arguments: dispatcher a Dispatcher instance, defined earlier in this module. This instance will dispatch out the correct calla...
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The default, standalone walk function following the standard argument ordering for the unparsing walkers. Arguments: dispatcher a Dispatcher instance, defined earlier in this module. This instance will dispatch out the correct callable for the various object types encountered thro...
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python
train
38.135714
rgs1/zk_shell
zk_shell/xclient.py
https://github.com/rgs1/zk_shell/blob/bbf34fdfcf1f81100e2a5816fad8af6afc782a54/zk_shell/xclient.py#L309-L348
def diff(self, path_a, path_b): """ Performs a deep comparison of path_a/ and path_b/ For each child, it yields (rv, child) where rv: -1 if doesn't exist in path_b (destination) 0 if they are different 1 if it doesn't exist in path_a (source) """ ...
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Performs a deep comparison of path_a/ and path_b/ For each child, it yields (rv, child) where rv: -1 if doesn't exist in path_b (destination) 0 if they are different 1 if it doesn't exist in path_a (source)
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python
train
30.7
Peter-Slump/python-keycloak-client
src/keycloak/uma.py
https://github.com/Peter-Slump/python-keycloak-client/blob/379ae58f3c65892327b0c98c06d4982aa83f357e/src/keycloak/uma.py#L123-L140
def resource_create_ticket(self, token, id, scopes, **kwargs): """ Create a ticket form permission to resource. https://www.keycloak.org/docs/latest/authorization_services/index.html#_service_protection_permission_api_papi :param str token: user access token :param str id: reso...
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Create a ticket form permission to resource. https://www.keycloak.org/docs/latest/authorization_services/index.html#_service_protection_permission_api_papi :param str token: user access token :param str id: resource id :param list scopes: scopes access is wanted :param dict cla...
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python
train
38.222222
WalletGuild/desw
desw/server.py
https://github.com/WalletGuild/desw/blob/f966c612e675961d9dbd8268749e349ba10a47c2/desw/server.py#L27-L48
def get_last_nonce(app, key, nonce): """ Get the last_nonce used by the given key from the SQLAlchemy database. Update the last_nonce to nonce at the same time. :param str key: the public key the nonce belongs to :param int nonce: the last nonce used by this key """ uk = ses.query(um.UserKe...
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Get the last_nonce used by the given key from the SQLAlchemy database. Update the last_nonce to nonce at the same time. :param str key: the public key the nonce belongs to :param int nonce: the last nonce used by this key
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python
train
33.090909
Azure/azure-sdk-for-python
azure-mgmt-eventhub/azure/mgmt/eventhub/event_hub_management_client.py
https://github.com/Azure/azure-sdk-for-python/blob/d7306fde32f60a293a7567678692bdad31e4b667/azure-mgmt-eventhub/azure/mgmt/eventhub/event_hub_management_client.py#L128-L138
def clusters(self): """Instance depends on the API version: * 2018-01-01-preview: :class:`ClustersOperations<azure.mgmt.eventhub.v2018_01_01_preview.operations.ClustersOperations>` """ api_version = self._get_api_version('clusters') if api_version == '2018-01-01-preview': ...
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Instance depends on the API version: * 2018-01-01-preview: :class:`ClustersOperations<azure.mgmt.eventhub.v2018_01_01_preview.operations.ClustersOperations>`
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python
test
59.272727
saltstack/salt
salt/pillar/vault.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/pillar/vault.py#L142-L172
def ext_pillar(minion_id, # pylint: disable=W0613 pillar, # pylint: disable=W0613 conf, nesting_key=None): ''' Get pillar data from Vault for the configuration ``conf``. ''' comps = conf.split() paths = [comp for comp in comps if comp.startswith('path=...
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Get pillar data from Vault for the configuration ``conf``.
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python
train
31.387097
hsolbrig/PyShEx
pyshex/shape_expressions_language/p5_4_node_constraints.py
https://github.com/hsolbrig/PyShEx/blob/9d659cc36e808afd66d4a6d60e8ea21cb12eb744/pyshex/shape_expressions_language/p5_4_node_constraints.py#L200-L213
def nodeSatisfiesValues(cntxt: Context, n: Node, nc: ShExJ.NodeConstraint, _c: DebugContext) -> bool: """ `5.4.5 Values Constraint <http://shex.io/shex-semantics/#values>`_ For a node n and constraint value v, nodeSatisfies(n, v) if n matches some valueSetValue vsv in v. """ if nc.values is None: ...
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`5.4.5 Values Constraint <http://shex.io/shex-semantics/#values>`_ For a node n and constraint value v, nodeSatisfies(n, v) if n matches some valueSetValue vsv in v.
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python
train
44.928571
peri-source/peri
peri/states.py
https://github.com/peri-source/peri/blob/61beed5deaaf978ab31ed716e8470d86ba639867/peri/states.py#L569-L594
def set_image(self, image): """ Update the current comparison (real) image """ if isinstance(image, np.ndarray): image = util.Image(image) if isinstance(image, util.NullImage): self.model_as_data = True else: self.model_as_data = False...
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Update the current comparison (real) image
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python
valid
32.653846
stephanepechard/projy
projy/templates/DjangoProjectTemplate.py
https://github.com/stephanepechard/projy/blob/3146b0e3c207b977e1b51fcb33138746dae83c23/projy/templates/DjangoProjectTemplate.py#L23-L30
def directories(self): """ Return the names of directories to be created. """ directories_description = [ self.project_name, self.project_name + '/conf', self.project_name + '/static', ] return directories_description
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Return the names of directories to be created.
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python
train
34.75
inveniosoftware/invenio-migrator
invenio_migrator/legacy/records.py
https://github.com/inveniosoftware/invenio-migrator/blob/6902c6968a39b747d15e32363f43b7dffe2622c2/invenio_migrator/legacy/records.py#L57-L85
def _get_collection_restrictions(collection): """Get all restrictions for a given collection, users and fireroles.""" try: from invenio.dbquery import run_sql from invenio.access_control_firerole import compile_role_definition except ImportError: from invenio.modules.access.firerole ...
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Get all restrictions for a given collection, users and fireroles.
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python
test
36.965517
loli/medpy
medpy/filter/IntensityRangeStandardization.py
https://github.com/loli/medpy/blob/95216b9e22e7ce301f0edf953ee2a2f1b6c6aee5/medpy/filter/IntensityRangeStandardization.py#L497-L506
def is_in_interval(n, l, r, border = 'included'): """ Checks whether a number is inside the interval l, r. """ if 'included' == border: return (n >= l) and (n <= r) elif 'excluded' == border: return (n > l) and (n < r) else: raise Value...
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Checks whether a number is inside the interval l, r.
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python
train
37.1
Netflix-Skunkworks/swag-client
swag_client/backends/file.py
https://github.com/Netflix-Skunkworks/swag-client/blob/e43816a85c4f48011cf497a4eae14f9df71fee0f/swag_client/backends/file.py#L33-L42
def save_file(data_file, data, dry_run=None): """Writes JSON data to data file.""" if dry_run: return with open(data_file, 'w', encoding='utf-8') as f: if sys.version_info > (3, 0): f.write(json.dumps(data)) else: f.write(json.dumps(data).decode('utf-8'))
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Writes JSON data to data file.
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python
train
30.7
sigmaris/python-gssapi
gssapi/names.py
https://github.com/sigmaris/python-gssapi/blob/a8ca577b3ccf9d9fa48f16f4954a1eddd5896236/gssapi/names.py#L198-L225
def export(self): """ Returns a representation of the Mechanism Name which is suitable for direct string comparison against other exported Mechanism Names. Its form is defined in the GSSAPI specification (RFC 2743). It can also be re-imported by constructing a :class:`Name` with ...
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Returns a representation of the Mechanism Name which is suitable for direct string comparison against other exported Mechanism Names. Its form is defined in the GSSAPI specification (RFC 2743). It can also be re-imported by constructing a :class:`Name` with the `name_type` param set to :const:`g...
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python
test
41.464286
Erotemic/utool
utool/Preferences.py
https://github.com/Erotemic/utool/blob/3b27e1f4e6e6fb23cd8744af7b7195b57d99e03a/utool/Preferences.py#L143-L147
def toggle(self, key): """ Toggles a boolean key """ val = self[key] assert isinstance(val, bool), 'key[%r] = %r is not a bool' % (key, val) self.pref_update(key, not val)
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Toggles a boolean key
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python
train
39.8
RRZE-HPC/kerncraft
kerncraft/kernel.py
https://github.com/RRZE-HPC/kerncraft/blob/c60baf8043e4da8d8d66da7575021c2f4c6c78af/kerncraft/kernel.py#L307-L322
def access_to_sympy(self, var_name, access): """ Transform a (multidimensional) variable access to a flattend sympy expression. Also works with flat array accesses. """ base_sizes = self.variables[var_name][1] expr = sympy.Number(0) for dimension, a in enumerat...
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Transform a (multidimensional) variable access to a flattend sympy expression. Also works with flat array accesses.
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python
test
28.625
pydata/xarray
xarray/core/dataset.py
https://github.com/pydata/xarray/blob/6d93a95d05bdbfc33fff24064f67d29dd891ab58/xarray/core/dataset.py#L2150-L2205
def interp_like(self, other, method='linear', assume_sorted=False, kwargs={}): """Interpolate this object onto the coordinates of another object, filling the out of range values with NaN. Parameters ---------- other : Dataset or DataArray Object w...
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Interpolate this object onto the coordinates of another object, filling the out of range values with NaN. Parameters ---------- other : Dataset or DataArray Object with an 'indexes' attribute giving a mapping from dimension names to an 1d array-like, which provid...
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python
train
37.928571
coleifer/peewee
playhouse/sqlite_ext.py
https://github.com/coleifer/peewee/blob/ea9403b01acb039adb3a2472186d795c796b77a0/playhouse/sqlite_ext.py#L615-L640
def search_bm25(cls, term, weights=None, with_score=False, score_alias='score', explicit_ordering=False): """Full-text search using selected `term`.""" if not weights: rank = SQL('rank') elif isinstance(weights, dict): weight_args = [] for ...
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Full-text search using selected `term`.
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python
train
39.115385
saltstack/salt
salt/states/lxd_image.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/states/lxd_image.py#L52-L298
def present(name, source, aliases=None, public=None, auto_update=None, remote_addr=None, cert=None, key=None, verify_cert=True): ''' Ensure an image exists, copy it else from source name : An alias of th...
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Ensure an image exists, copy it else from source name : An alias of the image, this is used to check if the image exists and it will be added as alias to the image on copy/create. source : Source dict. For an LXD to LXD copy: .. code-block: yaml source: ...
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python
train
29.919028
mattsolo1/hmmerclust
hmmerclust/hmmerclust.py
https://github.com/mattsolo1/hmmerclust/blob/471596043a660097ed8b11430d42118a8fd25798/hmmerclust/hmmerclust.py#L209-L259
def add_protein_to_organisms(self, orgprot_list): ''' Protein factory method. Iterates through a list of SearchIO hit objects, matches the accession against SeqRecord features for each organism. If there is a match, the new Protein object is created and stored in the pr...
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Protein factory method. Iterates through a list of SearchIO hit objects, matches the accession against SeqRecord features for each organism. If there is a match, the new Protein object is created and stored in the protein list of that Organism. Args orgprot_list: a ...
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python
train
33
SeattleTestbed/seash
pyreadline/rlmain.py
https://github.com/SeattleTestbed/seash/blob/40f9d2285662ff8b61e0468b4196acee089b273b/pyreadline/rlmain.py#L254-L259
def callback_handler_install(self, prompt, callback): u'''bool readline_callback_handler_install ( string prompt, callback callback) Initializes the readline callback interface and terminal, prints the prompt and returns immediately ''' self.callback = callback self.readline_setu...
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u'''bool readline_callback_handler_install ( string prompt, callback callback) Initializes the readline callback interface and terminal, prints the prompt and returns immediately
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python
train
54
glue-viz/glue-vispy-viewers
glue_vispy_viewers/extern/vispy/gloo/gl/pyopengl2.py
https://github.com/glue-viz/glue-vispy-viewers/blob/54a4351d98c1f90dfb1a557d1b447c1f57470eea/glue_vispy_viewers/extern/vispy/gloo/gl/pyopengl2.py#L82-L88
def _inject(): """ Copy functions from OpenGL.GL into _pyopengl namespace. """ NS = _pyopengl2.__dict__ for glname, ourname in _pyopengl2._functions_to_import: func = _get_function_from_pyopengl(glname) NS[ourname] = func
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Copy functions from OpenGL.GL into _pyopengl namespace.
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python
train
35.285714
brocade/pynos
pynos/versions/ver_6/ver_6_0_1/yang/brocade_system_monitor_ext.py
https://github.com/brocade/pynos/blob/bd8a34e98f322de3fc06750827d8bbc3a0c00380/pynos/versions/ver_6/ver_6_0_1/yang/brocade_system_monitor_ext.py#L81-L93
def show_system_monitor_output_switch_status_switch_state(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") show_system_monitor = ET.Element("show_system_monitor") config = show_system_monitor output = ET.SubElement(show_system_monitor, "output") ...
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Auto Generated Code
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python
train
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saltstack/salt
salt/modules/zabbix.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/zabbix.py#L2143-L2175
def usermacro_updateglobal(globalmacroid, value, **kwargs): ''' Update existing global usermacro. :param globalmacroid: id of the host usermacro :param value: new value of the host usermacro :param _connection_user: Optional - zabbix user (can also be set in opts or pillar, see module's docstring) ...
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python
train
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minhhoit/yacms
yacms/boot/__init__.py
https://github.com/minhhoit/yacms/blob/2921b706b7107c6e8c5f2bbf790ff11f85a2167f/yacms/boot/__init__.py#L55-L74
def parse_extra_model_fields(extra_model_fields): """ Parses the value of EXTRA_MODEL_FIELDS, grouping the entries by model and instantiating the extra fields. Returns a sequence of tuples of the form (model_key, fields) where model_key is a pair of app_label, model_name and fields is a list of (fie...
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python
train
46.4
glitchassassin/lackey
lackey/RegionMatching.py
https://github.com/glitchassassin/lackey/blob/7adadfacd7f45d81186710be992f5668b15399fe/lackey/RegionMatching.py#L331-L343
def offset(self, location, dy=0): """ Returns a new ``Region`` offset from this one by ``location`` Width and height remain the same """ if not isinstance(location, Location): # Assume variables passed were dx,dy location = Location(location, dy) r = Regi...
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Returns a new ``Region`` offset from this one by ``location`` Width and height remain the same
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python
train
40.461538
sangoma/pysensu
pysensu/api.py
https://github.com/sangoma/pysensu/blob/dc6799edbf2635247aec61fcf45b04ddec1beb49/pysensu/api.py#L165-L174
def post_check_request(self, check, subscribers): """ Issues a check execution request. """ data = { 'check': check, 'subscribers': [subscribers] } self._request('POST', '/request', data=json.dumps(data)) return True
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Issues a check execution request.
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python
train
28.7
rossant/ipymd
ipymd/formats/python.py
https://github.com/rossant/ipymd/blob/d87c9ebc59d67fe78b0139ee00e0e5307682e303/ipymd/formats/python.py#L122-L126
def _add_hash(source): """Add a leading hash '#' at the beginning of every line in the source.""" source = '\n'.join('# ' + line.rstrip() for line in source.splitlines()) return source
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python
train
43
proycon/pynlpl
pynlpl/formats/folia.py
https://github.com/proycon/pynlpl/blob/7707f69a91caaa6cde037f0d0379f1d42500a68b/pynlpl/formats/folia.py#L5051-L5070
def text(self, cls = 'current', retaintokenisation=False, previousdelimiter="",strict=False, correctionhandling=CorrectionHandling.CURRENT, normalize_spaces=False): """See :meth:`AbstractElement.text`""" if cls == 'original': correctionhandling = CorrectionHandling.ORIGINAL #backward compatibility ...
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python
train
58.55
saltstack/salt
salt/states/neutron_secgroup_rule.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/states/neutron_secgroup_rule.py#L44-L53
def _rule_compare(rule1, rule2): ''' Compare the common keys between security group rules against eachother ''' commonkeys = set(rule1.keys()).intersection(rule2.keys()) for key in commonkeys: if rule1[key] != rule2[key]: return False return True
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Compare the common keys between security group rules against eachother
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python
train
28.2
sentinel-hub/eo-learn
core/eolearn/core/eoworkflow.py
https://github.com/sentinel-hub/eo-learn/blob/b8c390b9f553c561612fe9eb64e720611633a035/core/eolearn/core/eoworkflow.py#L264-L275
def get_tasks(self): """Returns an ordered dictionary {task_name: task} of all tasks within this workflow. :return: Ordered dictionary with key being task_name (str) and an instance of a corresponding task from this workflow :rtype: OrderedDict """ tasks = collect...
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python
train
36.5
rabitt/pysox
sox/transform.py
https://github.com/rabitt/pysox/blob/eae89bde74567136ec3f723c3e6b369916d9b837/sox/transform.py#L1662-L1699
def loudness(self, gain_db=-10.0, reference_level=65.0): '''Loudness control. Similar to the gain effect, but provides equalisation for the human auditory system. The gain is adjusted by gain_db and the signal is equalised according to ISO 226 w.r.t. reference_level. Parameters...
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python
valid
31.473684
timgabets/bpc8583
bpc8583/transaction.py
https://github.com/timgabets/bpc8583/blob/1b8e95d73ad273ad9d11bff40d1af3f06f0f3503/bpc8583/transaction.py#L244-L253
def set_amount(self, amount): """ Set transaction amount """ if amount: try: self.IsoMessage.FieldData(4, int(amount)) except ValueError: self.IsoMessage.FieldData(4, 0) self.rebuild()
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Set transaction amount
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python
train
27.5
raiden-network/raiden
raiden/transfer/merkle_tree.py
https://github.com/raiden-network/raiden/blob/407ba15c72074e9de88771d6b9661ff4dc36bef5/raiden/transfer/merkle_tree.py#L16-L33
def hash_pair(first: Keccak256, second: Optional[Keccak256]) -> Keccak256: """ Computes the keccak hash of the elements ordered topologically. Since a merkle proof will not include all the elements, but only the path starting from the leaves up to the root, the order of the elements is not known by the...
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Computes the keccak hash of the elements ordered topologically. Since a merkle proof will not include all the elements, but only the path starting from the leaves up to the root, the order of the elements is not known by the proof checker. The topological order is used as a deterministic way of orderin...
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python
train
36.611111
apple/turicreate
src/external/coremltools_wrap/coremltools/coremltools/converters/keras/_layers.py
https://github.com/apple/turicreate/blob/74514c3f99e25b46f22c6e02977fe3da69221c2e/src/external/coremltools_wrap/coremltools/coremltools/converters/keras/_layers.py#L651-L705
def convert_gru(builder, layer, input_names, output_names, keras_layer): """Convert a GRU layer from keras to coreml. Parameters ---------- keras_layer: layer A keras layer object. builder: NeuralNetworkBuilder A neural network builder object. """ hidden_size = keras_layer...
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Convert a GRU layer from keras to coreml. Parameters ---------- keras_layer: layer A keras layer object. builder: NeuralNetworkBuilder A neural network builder object.
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python
train
32.690909
BlueBrain/NeuroM
neurom/fst/_bifurcationfunc.py
https://github.com/BlueBrain/NeuroM/blob/254bb73535b20053d175bc4725bade662177d12b/neurom/fst/_bifurcationfunc.py#L80-L91
def bifurcation_partition(bif_point): '''Calculate the partition at a bifurcation point We first ensure that the input point has only two children. The number of nodes in each child tree is counted. The partition is defined as the ratio of the largest number to the smallest number.''' assert len(b...
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Calculate the partition at a bifurcation point We first ensure that the input point has only two children. The number of nodes in each child tree is counted. The partition is defined as the ratio of the largest number to the smallest number.
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python
train
45.666667
django-cumulus/django-cumulus
cumulus/management/commands/syncfiles.py
https://github.com/django-cumulus/django-cumulus/blob/64feb07b857af28f226be4899e875c29405e261d/cumulus/management/commands/syncfiles.py#L258-L266
def print_tally(self): """ Prints the final tally to stdout. """ self.update_count = self.upload_count - self.create_count if self.test_run: print("Test run complete with the following results:") print("Skipped {0}. Created {1}. Updated {2}. Deleted {3}.".form...
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Prints the final tally to stdout.
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python
train
44.666667
hazelcast/hazelcast-python-client
hazelcast/proxy/replicated_map.py
https://github.com/hazelcast/hazelcast-python-client/blob/3f6639443c23d6d036aa343f8e094f052250d2c1/hazelcast/proxy/replicated_map.py#L99-L107
def contains_value(self, value): """ Determines whether this map contains one or more keys for the specified value. :param value: (object), the specified value. :return: (bool), ``true`` if this map contains an entry for the specified value. """ check_not_none(value, "va...
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python
train
50.111111
jtwhite79/pyemu
pyemu/utils/geostats.py
https://github.com/jtwhite79/pyemu/blob/c504d8e7a4097cec07655a6318d275739bd8148a/pyemu/utils/geostats.py#L1509-L1527
def _h_function(self,h): """ private method for the spherical variogram "h" function Parameters ---------- h : (float or numpy.ndarray) distance(s) Returns ------- h_function : float or numpy.ndarray the value of the "h" function implied ...
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private method for the spherical variogram "h" function Parameters ---------- h : (float or numpy.ndarray) distance(s) Returns ------- h_function : float or numpy.ndarray the value of the "h" function implied by the SphVario
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python
train
24.684211
kensho-technologies/graphql-compiler
graphql_compiler/compiler/expressions.py
https://github.com/kensho-technologies/graphql-compiler/blob/f6079c6d10f64932f6b3af309b79bcea2123ca8f/graphql_compiler/compiler/expressions.py#L769-L779
def validate(self): """Validate that the BinaryComposition is correctly representable.""" _validate_operator_name(self.operator, BinaryComposition.SUPPORTED_OPERATORS) if not isinstance(self.left, Expression): raise TypeError(u'Expected Expression left, got: {} {} {}'.format( ...
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Validate that the BinaryComposition is correctly representable.
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python
train
49.818182
Synerty/peek-plugin-base
peek_plugin_base/storage/StorageUtil.py
https://github.com/Synerty/peek-plugin-base/blob/276101d028e1ee0678af514c761b74cce5a5cda9/peek_plugin_base/storage/StorageUtil.py#L46-L62
def makeCoreValuesSubqueryCondition(engine, column, values: List[Union[int, str]]): """ Make Core Values Subquery :param engine: The database engine, used to determine the dialect :param column: The column, eg TableItem.__table__.c.colName :param values: A list of string or int values """ if i...
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Make Core Values Subquery :param engine: The database engine, used to determine the dialect :param column: The column, eg TableItem.__table__.c.colName :param values: A list of string or int values
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python
train
29.647059
bennylope/django-organizations
organizations/utils.py
https://github.com/bennylope/django-organizations/blob/85f753a8f7a8f0f31636c9209fb69e7030a5c79a/organizations/utils.py#L115-L120
def model_field_attr(model, model_field, attr): """ Returns the specified attribute for the specified field on the model class. """ fields = dict([(field.name, field) for field in model._meta.fields]) return getattr(fields[model_field], attr)
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python
train
42.833333
Karaage-Cluster/python-tldap
tldap/database/helpers.py
https://github.com/Karaage-Cluster/python-tldap/blob/61f1af74a3648cb6491e7eeb1ee2eb395d67bf59/tldap/database/helpers.py#L38-L66
def rdn_to_dn(changes: Changeset, name: str, base_dn: str) -> Changeset: """ Convert the rdn to a fully qualified DN for the specified LDAP connection. :param changes: The changes object to lookup. :param name: rdn to convert. :param base_dn: The base_dn to lookup. :return: fully qualified DN. ...
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Convert the rdn to a fully qualified DN for the specified LDAP connection. :param changes: The changes object to lookup. :param name: rdn to convert. :param base_dn: The base_dn to lookup. :return: fully qualified DN.
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python
train
30.724138
mwouts/jupytext
jupytext/cell_to_text.py
https://github.com/mwouts/jupytext/blob/eb7d6aee889f80ad779cfc53441c648f0db9246d/jupytext/cell_to_text.py#L277-L300
def remove_eoc_marker(self, text, next_text): """Remove end of cell marker when next cell has an explicit start marker""" if self.cell_marker_start: return text if self.is_code() and text[-1] == self.comment + ' -': # remove end of cell marker when redundant with next ex...
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Remove end of cell marker when next cell has an explicit start marker
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python
train
58
google/grr
grr/core/grr_response_core/lib/parsers/linux_service_parser.py
https://github.com/google/grr/blob/5cef4e8e2f0d5df43ea4877e9c798e0bf60bfe74/grr/core/grr_response_core/lib/parsers/linux_service_parser.py#L77-L85
def _LogInvalidRunLevels(states, valid): """Log any invalid run states found.""" invalid = set() for state in states: if state not in valid: invalid.add(state) if invalid: logging.warning("Invalid init runlevel(s) encountered: %s", ", ".join(invalid))
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Log any invalid run states found.
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python
train
31.666667
tdryer/hangups
docs/generate_proto_docs.py
https://github.com/tdryer/hangups/blob/85c0bf0a57698d077461283895707260f9dbf931/docs/generate_proto_docs.py#L202-L229
def main(): """Parse arguments and print generated documentation to stdout.""" parser = argparse.ArgumentParser() parser.add_argument('protofilepath') args = parser.parse_args() out_file = compile_protofile(args.protofilepath) with open(out_file, 'rb') as proto_file: # pylint: disable=n...
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Parse arguments and print generated documentation to stdout.
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python
valid
43.892857
openearth/mmi-python
mmi/runner.py
https://github.com/openearth/mmi-python/blob/a2f4ac96b1e7f2fa903f668b3e05c4e86ad42e8d/mmi/runner.py#L123-L146
def create_bmi_model(self, engine, bmi_class=None, wrapper_kwargs=None): """initialize a bmi mode using an optional class""" if wrapper_kwargs is None: wrapper_kwargs = {} if bmi_class is None: wrapper_class = bmi.wrapper.BMIWrapper else: wrapper_class...
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initialize a bmi mode using an optional class
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python
train
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Julian/jsonschema
jsonschema/validators.py
https://github.com/Julian/jsonschema/blob/a72332004cdc3ba456de7918bc32059822b2f69a/jsonschema/validators.py#L154-L364
def create( meta_schema, validators=(), version=None, default_types=None, type_checker=None, id_of=_id_of, ): """ Create a new validator class. Arguments: meta_schema (collections.Mapping): the meta schema for the new validator class validators (collec...
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Create a new validator class. Arguments: meta_schema (collections.Mapping): the meta schema for the new validator class validators (collections.Mapping): a mapping from names to callables, where each callable will validate the schema property with the given n...
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python
train
32.398104
maas/python-libmaas
maas/client/flesh/__init__.py
https://github.com/maas/python-libmaas/blob/4092c68ef7fb1753efc843569848e2bcc3415002/maas/client/flesh/__init__.py#L409-L437
def print_all_commands(self, *, no_pager=False): """Print help for all commands. Commands are sorted in alphabetical order and wrapping is done based on the width of the terminal. """ formatter = self.parent_parser._get_formatter() command_names = sorted(self.parent_pars...
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Print help for all commands. Commands are sorted in alphabetical order and wrapping is done based on the width of the terminal.
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python
train
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hyperledger/indy-sdk
wrappers/python/indy/anoncreds.py
https://github.com/hyperledger/indy-sdk/blob/55240dc170308d7883c48f03f308130a6d077be6/wrappers/python/indy/anoncreds.py#L252-L332
async def issuer_create_credential(wallet_handle: int, cred_offer_json: str, cred_req_json: str, cred_values_json: str, rev_reg_id: Optional[str], ...
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Check Cred Request for the given Cred Offer and issue Credential for the given Cred Request. Cred Request must match Cred Offer. The credential definition and revocation registry definition referenced in Cred Offer and Cred Request must be already created and stored into the wallet. Information for this c...
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python
train
55.469136
data61/clkhash
clkhash/clk.py
https://github.com/data61/clkhash/blob/ec6398d6708a063de83f7c3d6286587bff8e7121/clkhash/clk.py#L179-L186
def chunks(seq, chunk_size): # type: (Sequence[T], int) -> Iterable[Sequence[T]] """ Split seq into chunk_size-sized chunks. :param seq: A sequence to chunk. :param chunk_size: The size of chunk. """ return (seq[i:i + chunk_size] for i in range(0, len(seq), chunk_size))
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Split seq into chunk_size-sized chunks. :param seq: A sequence to chunk. :param chunk_size: The size of chunk.
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python
train
37
JoshAshby/pyRethinkORM
rethinkORM/rethinkCollection.py
https://github.com/JoshAshby/pyRethinkORM/blob/92158d146dea6cfe9022d7de2537403f5f2c1e02/rethinkORM/rethinkCollection.py#L84-L92
def offset(self, value): """ Allows for skipping a specified number of results in query. Useful for pagination. """ self._query = self._query.skip(value) return self
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Allows for skipping a specified number of results in query. Useful for pagination.
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python
train
23
Opentrons/opentrons
update-server/otupdate/buildroot/update.py
https://github.com/Opentrons/opentrons/blob/a7c15cc2636ecb64ab56c7edc1d8a57163aaeadf/update-server/otupdate/buildroot/update.py#L86-L104
def _begin_write(session: UpdateSession, loop: asyncio.AbstractEventLoop, rootfs_file_path: str): """ Start the write process. """ session.set_progress(0) session.set_stage(Stages.WRITING) write_future = asyncio.ensure_future(loop.run_in_executor( None, file_act...
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Start the write process.
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python
train
34.473684
maximkulkin/lollipop
lollipop/types.py
https://github.com/maximkulkin/lollipop/blob/042e8a24508cc3b28630863253c38ffbfc52c882/lollipop/types.py#L1450-L1532
def load_into(self, obj, data, inplace=True, *args, **kwargs): """Load data and update existing object. :param obj: Object to update with deserialized data. :param data: Raw data to get value to deserialize from. :param bool inplace: If True update data inplace; otherwise - ...
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Load data and update existing object. :param obj: Object to update with deserialized data. :param data: Raw data to get value to deserialize from. :param bool inplace: If True update data inplace; otherwise - create new data. :param kwargs: Same keyword arguments as for :met...
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python
train
37.036145