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kgori/treeCl
treeCl/bootstrap.py
https://github.com/kgori/treeCl/blob/fed624b3db1c19cc07175ca04e3eda6905a8d305/treeCl/bootstrap.py#L316-L322
def levenberg_marquardt(self, start_x=None, damping=1.0e-3, tolerance=1.0e-6): """ Optimise value of x using levenberg marquardt """ if start_x is None: start_x = self._analytical_fitter.fit(self._c) return optimise_levenberg_marquardt(start_x, self._a, self._c, toler...
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Optimise value of x using levenberg marquardt
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python
train
45.571429
svinota/mdns
mdns/zeroconf.py
https://github.com/svinota/mdns/blob/295f6407132616a0ff7401124b9057d89555f91d/mdns/zeroconf.py#L968-L992
def write_name(self, name): """Writes a domain name to the packet""" try: # Find existing instance of this name in packet # index = self.names[name] except KeyError: # No record of this name already, so write it # out as normal, record...
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Writes a domain name to the packet
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python
train
31.32
elliterate/capybara.py
capybara/node/actions.py
https://github.com/elliterate/capybara.py/blob/0c6ae449cc37e4445ec3cd6af95674533beedc6c/capybara/node/actions.py#L197-L234
def _check_with_label(self, selector, checked, locator=None, allow_label_click=None, visible=None, wait=None, **kwargs): """ Args: selector (str): The selector for the type of element that should be checked/unchecked. checked (bool): Whether the element ...
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Args: selector (str): The selector for the type of element that should be checked/unchecked. checked (bool): Whether the element should be checked. locator (str, optional): Which element to check. allow_label_click (bool, optional): Attempt to click the label to toggle st...
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python
test
48.526316
ricequant/rqalpha
rqalpha/model/tick.py
https://github.com/ricequant/rqalpha/blob/ac40a62d4e7eca9494b4d0a14f46facf5616820c/rqalpha/model/tick.py#L44-L58
def datetime(self): """ [datetime.datetime] 当前快照数据的时间戳 """ try: dt = self._tick_dict['datetime'] except (KeyError, ValueError): return datetime.datetime.min else: if not isinstance(dt, datetime.datetime): if dt > 1000000...
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[datetime.datetime] 当前快照数据的时间戳
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python
train
32
palantir/typedjsonrpc
typedjsonrpc/registry.py
https://github.com/palantir/typedjsonrpc/blob/274218fcd236ff9643506caa629029c9ba25a0fb/typedjsonrpc/registry.py#L95-L118
def dispatch(self, request): """Takes a request and dispatches its data to a jsonrpc method. :param request: a werkzeug request with json data :type request: werkzeug.wrappers.Request :return: json output of the corresponding method :rtype: str .. versionadded:: 0.1.0 ...
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Takes a request and dispatches its data to a jsonrpc method. :param request: a werkzeug request with json data :type request: werkzeug.wrappers.Request :return: json output of the corresponding method :rtype: str .. versionadded:: 0.1.0
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python
train
38.833333
SheffieldML/GPy
GPy/util/univariate_Gaussian.py
https://github.com/SheffieldML/GPy/blob/54c32d79d289d622fb18b898aee65a2a431d90cf/GPy/util/univariate_Gaussian.py#L14-L24
def inv_std_norm_cdf(x): """ Inverse cumulative standard Gaussian distribution Based on Winitzki, S. (2008) """ z = 2*x -1 ln1z2 = np.log(1-z**2) a = 8*(np.pi -3)/(3*np.pi*(4-np.pi)) b = 2/(np.pi * a) + ln1z2/2 inv_erf = np.sign(z) * np.sqrt( np.sqrt(b**2 - ln1z2/a) - b ) return ...
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Inverse cumulative standard Gaussian distribution Based on Winitzki, S. (2008)
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python
train
30
Alignak-monitoring/alignak
alignak/http/arbiter_interface.py
https://github.com/Alignak-monitoring/alignak/blob/f3c145207e83159b799d3714e4241399c7740a64/alignak/http/arbiter_interface.py#L1629-L1638
def _wait_new_conf(self): """Ask the daemon to drop its configuration and wait for a new one This overrides the default method from GenericInterface :return: None """ with self.app.conf_lock: logger.warning("My master Arbiter wants me to wait for a new configuration...
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python
train
34.9
timothydmorton/VESPA
vespa/fpp.py
https://github.com/timothydmorton/VESPA/blob/0446b54d48009f3655cfd1a3957ceea21d3adcaa/vespa/fpp.py#L406-L433
def plotsignal(self,fig=None,saveplot=True,folder=None,figformat='png',**kwargs): """ Plots TransitSignal Calls :func:`TransitSignal.plot`, saves to provided folder. :param fig: (optional) Argument for :func:`plotutils.setfig`. :param saveplot: (optional) ...
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Plots TransitSignal Calls :func:`TransitSignal.plot`, saves to provided folder. :param fig: (optional) Argument for :func:`plotutils.setfig`. :param saveplot: (optional) Whether to save figure. :param folder: (optional) Folder to which to save plot...
[ "Plots", "TransitSignal" ]
python
train
29.035714
rande/python-simple-ioc
ioc/extra/tornado/router.py
https://github.com/rande/python-simple-ioc/blob/36ddf667c1213a07a53cd4cdd708d02494e5190b/ioc/extra/tornado/router.py#L32-L42
def generate_static(self, path): """ This method generates a valid path to the public folder of the running project """ if not path: return "" if path[0] == '/': return "%s?v=%s" % (path, self.version) return "%s/%s?v=%s" % (self.static, path, se...
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This method generates a valid path to the public folder of the running project
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python
train
29.181818
bcbio/bcbio-nextgen
bcbio/structural/hydra.py
https://github.com/bcbio/bcbio-nextgen/blob/6a9348c0054ccd5baffd22f1bb7d0422f6978b20/bcbio/structural/hydra.py#L148-L162
def detect_sv(align_bam, genome_build, dirs, config): """Detect structural variation from discordant aligned pairs. """ work_dir = utils.safe_makedir(os.path.join(dirs["work"], "structural")) pair_stats = shared.calc_paired_insert_stats(align_bam) fix_bam = remove_nopairs(align_bam, work_dir, config...
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Detect structural variation from discordant aligned pairs.
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python
train
53.866667
azogue/dataweb
dataweb/mergedataweb.py
https://github.com/azogue/dataweb/blob/085035855df7cef0fe7725bbe9a706832344d946/dataweb/mergedataweb.py#L39-L91
def merge_data(lista_dfs_o_dict, keys_merge=None): """ Realiza y devuelve el merge de una lista de pandas DataFrame's (o bien de un diccionario de {key:pd.Dataframe}). Coge la primera y en ella va añadiendo el resto, de una en una. Seguramente no sea la mejor opción para realizar la fusión de los datos ...
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Realiza y devuelve el merge de una lista de pandas DataFrame's (o bien de un diccionario de {key:pd.Dataframe}). Coge la primera y en ella va añadiendo el resto, de una en una. Seguramente no sea la mejor opción para realizar la fusión de los datos de distintos días, pero aguanta bien la superposición de mu...
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python
train
50.471698
StanfordVL/robosuite
robosuite/devices/keyboard.py
https://github.com/StanfordVL/robosuite/blob/65cd16810e2ed647e3ec88746af3412065b7f278/robosuite/devices/keyboard.py#L26-L45
def _display_controls(self): """ Method to pretty print controls. """ def print_command(char, info): char += " " * (10 - len(char)) print("{}\t{}".format(char, info)) print("") print_command("Keys", "Command") print_command("q", "reset si...
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Method to pretty print controls.
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python
train
36.1
saltstack/salt
salt/modules/mac_power.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/mac_power.py#L379-L404
def set_restart_power_failure(enabled): ''' Set whether or not the computer will automatically restart after a power failure. :param bool enabled: True to enable, False to disable. "On" and "Off" are also acceptable values. Additionally you can pass 1 and 0 to represent True and False r...
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Set whether or not the computer will automatically restart after a power failure. :param bool enabled: True to enable, False to disable. "On" and "Off" are also acceptable values. Additionally you can pass 1 and 0 to represent True and False respectively :return: True if successful, False ...
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python
train
29.269231
xtrementl/focus
focus/task.py
https://github.com/xtrementl/focus/blob/cbbbc0b49a7409f9e0dc899de5b7e057f50838e4/focus/task.py#L285-L300
def remove(self, task_name): """ Removes an existing task directory. `task_name` Task name. Returns ``True`` if removal successful. """ try: task_dir = self._get_task_dir(task_name) shutil.rmtree(task_dir) return ...
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Removes an existing task directory. `task_name` Task name. Returns ``True`` if removal successful.
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python
train
22.4375
erikvw/django-collect-offline-files
django_collect_offline_files/transaction/transaction_importer.py
https://github.com/erikvw/django-collect-offline-files/blob/78f61c823ea3926eb88206b019b5dca3c36017da/django_collect_offline_files/transaction/transaction_importer.py#L160-L179
def populate(self, deserialized_txs=None, filename=None, retry=None): """Populates the batch with unsaved model instances from a generator of deserialized objects. """ if not deserialized_txs: raise BatchError("Failed to populate batch. There are no objects to add.") ...
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Populates the batch with unsaved model instances from a generator of deserialized objects.
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python
train
45.15
ethereum/pyethereum
ethereum/tools/_solidity.py
https://github.com/ethereum/pyethereum/blob/b704a5c6577863edc539a1ec3d2620a443b950fb/ethereum/tools/_solidity.py#L124-L130
def compiler_version(): """ Return the version of the installed solc. """ version_info = subprocess.check_output(['solc', '--version']) match = re.search(b'^Version: ([0-9a-z.-]+)/', version_info, re.MULTILINE) if match: return match.group(1)
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Return the version of the installed solc.
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python
train
37.285714
ThreatConnect-Inc/tcex
tcex/tcex_playbook.py
https://github.com/ThreatConnect-Inc/tcex/blob/dd4d7a1ef723af1561687120191886b9a2fd4b47/tcex/tcex_playbook.py#L72-L134
def add_output(self, key, value, variable_type): """Dynamically add output to output_data dictionary to be written to DB later. This method provides an alternative and more dynamic way to create output variables in an App. Instead of storing the output data manually and writing all at once the ...
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python
train
37.793651
gwpy/gwpy
gwpy/utils/decorators.py
https://github.com/gwpy/gwpy/blob/7a92b917e7dd2d99b15895293a1fa1d66cdb210a/gwpy/utils/decorators.py#L64-L90
def deprecated_function(func, warning=DEPRECATED_FUNCTION_WARNING): """Adds a `DeprecationWarning` to a function Parameters ---------- func : `callable` the function to decorate with a `DeprecationWarning` warning : `str`, optional the warning to present Notes ----- Th...
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Adds a `DeprecationWarning` to a function Parameters ---------- func : `callable` the function to decorate with a `DeprecationWarning` warning : `str`, optional the warning to present Notes ----- The final warning message is formatted as ``warning.format(func)`` so you...
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python
train
27.592593
Stewori/pytypes
pytypes/__init__.py
https://github.com/Stewori/pytypes/blob/b814d38709e84c0e0825caf8b721c20eb5a8ab3b/pytypes/__init__.py#L425-L438
def enable_global_annotations_decorator(flag = True, retrospective = True): """Enables or disables global annotation mode via decorators. See flag global_annotations_decorator. In contrast to setting the flag directly, this function provides a retrospective option. If retrospective is true, this will al...
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Enables or disables global annotation mode via decorators. See flag global_annotations_decorator. In contrast to setting the flag directly, this function provides a retrospective option. If retrospective is true, this will also affect already imported modules, not only future imports.
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python
train
47.285714
libChEBI/libChEBIpy
libchebipy/_chebi_entity.py
https://github.com/libChEBI/libChEBIpy/blob/89f223a91f518619d5e3910070d283adcac1626e/libchebipy/_chebi_entity.py#L215-L230
def get_mol_filename(self): '''Returns mol filename''' mol_filename = parsers.get_mol_filename(self.__chebi_id) if mol_filename is None: mol_filename = parsers.get_mol_filename(self.get_parent_id()) if mol_filename is None: for parent_or_child_id in self.__get_a...
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Returns mol filename
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python
train
32.0625
oauthlib/oauthlib
oauthlib/oauth2/rfc6749/endpoints/metadata.py
https://github.com/oauthlib/oauthlib/blob/30321dd3c0ca784d3508a1970cf90d9f76835c79/oauthlib/oauth2/rfc6749/endpoints/metadata.py#L57-L64
def create_metadata_response(self, uri, http_method='GET', body=None, headers=None): """Create metadata response """ headers = { 'Content-Type': 'application/json' } return headers, json.dumps(self.claims), 200
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Create metadata response
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python
train
36
timeyyy/apptools
peasoup/uploadlogs.py
https://github.com/timeyyy/apptools/blob/d3c0f324b0c2689c35f5601348276f4efd6cb240/peasoup/uploadlogs.py#L31-L43
def logexception(self, logger=None): ''' calls exception method on a loger and prints the log to stdout logger is set in the cfg #Todo more details here on the cfg etc :param logger: :return: ''' traceback.print_exc() if logger: logger...
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calls exception method on a loger and prints the log to stdout logger is set in the cfg #Todo more details here on the cfg etc :param logger: :return:
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python
train
32.923077
threema-ch/ocspresponder
ocspresponder/__init__.py
https://github.com/threema-ch/ocspresponder/blob/b9486af68dd02b84e01bedabe4f6843a6ff0f698/ocspresponder/__init__.py#L120-L127
def _handle_post(self): """ An OCSP POST request contains the DER encoded OCSP request in the HTTP request body. """ der = request.body.read() ocsp_request = self._parse_ocsp_request(der) return self._build_http_response(ocsp_request)
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An OCSP POST request contains the DER encoded OCSP request in the HTTP request body.
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python
train
35.375
wesleybeckner/salty
salty/core.py
https://github.com/wesleybeckner/salty/blob/ef17a97aea3e4f81fcd0359ce85b3438c0e6499b/salty/core.py#L210-L302
def aggregate_data(data, T=[0, inf], P=[0, inf], data_ranges=None, merge="overlap", feature_type=None, impute=False, scale_center=True): """ Aggregates molecular data for model training Parameters ---------- data: list density, cpt, and/or viscosity ...
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Aggregates molecular data for model training Parameters ---------- data: list density, cpt, and/or viscosity T: array desired min and max of temperature distribution P: array desired min and max of pressure distribution data_ranges: array desired min and max of p...
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python
train
43.462366
brocade/pynos
pynos/versions/ver_7/ver_7_1_0/yang/brocade_vswitch.py
https://github.com/brocade/pynos/blob/bd8a34e98f322de3fc06750827d8bbc3a0c00380/pynos/versions/ver_7/ver_7_1_0/yang/brocade_vswitch.py#L349-L360
def get_vnetwork_dvpgs_input_vcenter(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") get_vnetwork_dvpgs = ET.Element("get_vnetwork_dvpgs") config = get_vnetwork_dvpgs input = ET.SubElement(get_vnetwork_dvpgs, "input") vcenter = ET.SubElem...
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Auto Generated Code
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python
train
38.833333
greenelab/PathCORE-T
pathcore/network.py
https://github.com/greenelab/PathCORE-T/blob/9d079d5ebffea2fe9fb9ab557588d51ad67d2c9c/pathcore/network.py#L512-L520
def _augment_network(self, edge_dict): """Given a dictionary of edges (edge id -> feature list), add all of these to the CoNetwork object """ for (vertex0, vertex1), feature_list in edge_dict.items(): edge_obj = Edge(vertex0, vertex1, feature_list) self.edges[(ver...
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python
train
50
maweigert/gputools
gputools/convolve/convolve.py
https://github.com/maweigert/gputools/blob/6ab26efeb05dceef74cf13aadeeeb9b009b529dd/gputools/convolve/convolve.py#L18-L54
def convolve(data, h, res_g=None, sub_blocks=None): """ convolves 1d-3d data with kernel h data and h can either be numpy arrays or gpu buffer objects (OCLArray, which must be float32 then) boundary conditions are clamping to zero at edge. """ if not len(data.shape) in [1, 2, 3]: ...
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convolves 1d-3d data with kernel h data and h can either be numpy arrays or gpu buffer objects (OCLArray, which must be float32 then) boundary conditions are clamping to zero at edge.
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python
train
41.837838
wesyoung/pyzyre
czmq/_czmq_ctypes.py
https://github.com/wesyoung/pyzyre/blob/22d4c757acefcfdb700d3802adaf30b402bb9eea/czmq/_czmq_ctypes.py#L1214-L1220
def append(self, data, size): """ Append user-supplied data to chunk, return resulting chunk size. If the data would exceeded the available space, it is truncated. If you want to grow the chunk to accommodate new data, use the zchunk_extend method. """ return lib.zchunk_append(self._as_p...
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Append user-supplied data to chunk, return resulting chunk size. If the data would exceeded the available space, it is truncated. If you want to grow the chunk to accommodate new data, use the zchunk_extend method.
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python
train
48
rcbops/flake8-filename
flake8_filename/__init__.py
https://github.com/rcbops/flake8-filename/blob/5718d4af394c318d376de7434193543e0da45651/flake8_filename/__init__.py#L68-L86
def run(self): """Required by flake8 Will be called after add_options and parse_options. Yields: tuple: (int, int, str, type) the tuple used by flake8 to construct a violation """ if len(self.filename_checks) == 0: message = "N401 no configuration found ...
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python
train
38.684211
mattjj/pyslds
pyslds/states.py
https://github.com/mattjj/pyslds/blob/c505c2bd05a5549d450b518f02493b68ed12e590/pyslds/states.py#L730-L748
def mf_aBl(self): """ These are the expected log likelihoods (node potentials) as seen from the discrete states. """ mf_aBl = self._mf_aBl = np.zeros((self.T, self.num_states)) ids, dds, eds = self.init_dynamics_distns, self.dynamics_distns, \ self.emission_di...
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These are the expected log likelihoods (node potentials) as seen from the discrete states.
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python
train
39.052632
Clinical-Genomics/scout
scout/adapter/mongo/panel.py
https://github.com/Clinical-Genomics/scout/blob/90a551e2e1653a319e654c2405c2866f93d0ebb9/scout/adapter/mongo/panel.py#L189-L200
def delete_panel(self, panel_obj): """Delete a panel by '_id'. Args: panel_obj(dict) Returns: res(pymongo.DeleteResult) """ res = self.panel_collection.delete_one({'_id': panel_obj['_id']}) LOG.warning("Deleting panel %s, version %s" % (panel_obj...
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Delete a panel by '_id'. Args: panel_obj(dict) Returns: res(pymongo.DeleteResult)
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python
test
30.5
sprockets/sprockets.mixins.mediatype
sprockets/mixins/mediatype/content.py
https://github.com/sprockets/sprockets.mixins.mediatype/blob/c034e04f674201487a8d6ce9f8ce36f3f5de07d8/sprockets/mixins/mediatype/content.py#L287-L307
def get_response_content_type(self): """Figure out what content type will be used in the response.""" if self._best_response_match is None: settings = get_settings(self.application, force_instance=True) acceptable = headers.parse_accept( self.request.headers.get( ...
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Figure out what content type will be used in the response.
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python
train
50.380952
mikedh/trimesh
trimesh/base.py
https://github.com/mikedh/trimesh/blob/25e059bf6d4caa74f62ffd58ce4f61a90ee4e518/trimesh/base.py#L1387-L1402
def is_winding_consistent(self): """ Does the mesh have consistent winding or not. A mesh with consistent winding has each shared edge going in an opposite direction from the other in the pair. Returns -------- consistent : bool Is winding is consistent...
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Does the mesh have consistent winding or not. A mesh with consistent winding has each shared edge going in an opposite direction from the other in the pair. Returns -------- consistent : bool Is winding is consistent or not
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python
train
34.0625
bunq/sdk_python
bunq/sdk/model/generated/endpoint.py
https://github.com/bunq/sdk_python/blob/da6c9b83e6d83ee8062617f53c6eb7293c0d863d/bunq/sdk/model/generated/endpoint.py#L13047-L13098
def update(cls, request_response_id, monetary_account_id=None, amount_responded=None, status=None, address_shipping=None, address_billing=None, custom_headers=None): """ Update the status to accept or reject the RequestResponse. :type user_id: int :type mon...
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python
train
45.75
INM-6/hybridLFPy
examples/Hagen_et_al_2016_cercor/plot_methods.py
https://github.com/INM-6/hybridLFPy/blob/c38bdf38982c4624c2f70caeb50c40f1d5980abd/examples/Hagen_et_al_2016_cercor/plot_methods.py#L43-L382
def network_sketch(ax, highlight=None, labels=True, yscaling=1.): ''' highlight : None or string if string, then only the label of this population is set and the box is highlighted ''' name_to_id_mapping={'L6E':(0,0), 'L6I':(0,1), 'L5E':(1,0)...
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python
train
52.041176
mikedh/trimesh
trimesh/scene/transforms.py
https://github.com/mikedh/trimesh/blob/25e059bf6d4caa74f62ffd58ce4f61a90ee4e518/trimesh/scene/transforms.py#L76-L86
def md5(self): """ "Hash" of transforms Returns ----------- md5 : str Approximate hash of transforms """ result = str(self._updated) + str(self.base_frame) return result
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"Hash" of transforms Returns ----------- md5 : str Approximate hash of transforms
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python
train
21.272727
jxtech/wechatpy
wechatpy/pay/api/coupon.py
https://github.com/jxtech/wechatpy/blob/4df0da795618c0895a10f1c2cde9e9d5c0a93aaa/wechatpy/pay/api/coupon.py#L11-L41
def send(self, user_id, stock_id, op_user_id=None, device_info=None, out_trade_no=None): """ 发放代金券 :param user_id: 用户在公众号下的 openid :param stock_id: 代金券批次 ID :param op_user_id: 可选,操作员账号,默认为商户号 :param device_info: 可选,微信支付分配的终端设备号 :param out_trade_no: 可...
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发放代金券 :param user_id: 用户在公众号下的 openid :param stock_id: 代金券批次 ID :param op_user_id: 可选,操作员账号,默认为商户号 :param device_info: 可选,微信支付分配的终端设备号 :param out_trade_no: 可选,商户订单号,需保持唯一性,默认自动生成 :return: 返回的结果信息
[ "发放代金券" ]
python
train
32.387097
adafruit/Adafruit_Python_GPIO
Adafruit_GPIO/FT232H.py
https://github.com/adafruit/Adafruit_Python_GPIO/blob/a92a23d6b5869663b2bc1ccf78bb11585076a9c4/Adafruit_GPIO/FT232H.py#L861-L866
def readS8(self, register): """Read a signed byte from the specified register.""" result = self.readU8(register) if result > 127: result -= 256 return result
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Read a signed byte from the specified register.
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python
valid
32.666667
IdentityPython/SATOSA
src/satosa/deprecated.py
https://github.com/IdentityPython/SATOSA/blob/49da5d4c0ac1a5ebf1a71b4f7aaf04f0e52d8fdb/src/satosa/deprecated.py#L122-L132
def save_state(internal_request, state): """ Saves all necessary information needed by the UserIdHasher :type internal_request: satosa.internal_data.InternalRequest :param internal_request: The request :param state: The current state """ state_data = {"hash_type...
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Saves all necessary information needed by the UserIdHasher :type internal_request: satosa.internal_data.InternalRequest :param internal_request: The request :param state: The current state
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python
train
36.272727
inveniosoftware-attic/invenio-comments
invenio_comments/api.py
https://github.com/inveniosoftware-attic/invenio-comments/blob/62bb6e07c146baf75bf8de80b5896ab2a01a8423/invenio_comments/api.py#L945-L951
def get_reply_order_cache_data(comid): """ Prepare a representation of the comment ID given as parameter so that it is suitable for byte ordering in MySQL. """ return "%s%s%s%s" % (chr((comid >> 24) % 256), chr((comid >> 16) % 256), chr((comid >> 8) % 256), chr(comid % 256))
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Prepare a representation of the comment ID given as parameter so that it is suitable for byte ordering in MySQL.
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python
train
44.857143
wummel/linkchecker
third_party/dnspython/dns/ipv6.py
https://github.com/wummel/linkchecker/blob/c2ce810c3fb00b895a841a7be6b2e78c64e7b042/third_party/dnspython/dns/ipv6.py#L96-L163
def inet_aton(text): """Convert a text format IPv6 address into network format. @param text: the textual address @type text: string @rtype: string @raises dns.exception.SyntaxError: the text was not properly formatted """ # # Our aim here is not something fast; we just want something t...
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Convert a text format IPv6 address into network format. @param text: the textual address @type text: string @rtype: string @raises dns.exception.SyntaxError: the text was not properly formatted
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python
train
27.352941
OLC-LOC-Bioinformatics/GenomeQAML
genomeqaml/extract_features.py
https://github.com/OLC-LOC-Bioinformatics/GenomeQAML/blob/2953e574c185afab23075641da4ce5392bc003e9/genomeqaml/extract_features.py#L54-L63
def find_files(sequencepath): """ Use glob to find all FASTA files in the provided sequence path. NOTE: FASTA files must have an extension such as .fasta, .fa, or .fas. Extensions of .fsa, .tfa, ect. are not currently supported :param sequencepath: path of folder containing FASTA genomes :return: li...
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Use glob to find all FASTA files in the provided sequence path. NOTE: FASTA files must have an extension such as .fasta, .fa, or .fas. Extensions of .fsa, .tfa, ect. are not currently supported :param sequencepath: path of folder containing FASTA genomes :return: list of FASTA files
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python
train
48.6
Dapid/tmscoring
tmscoring/tmscore.py
https://github.com/Dapid/tmscoring/blob/353c567e201ee9835c8209f6130b80b1cfb5b10f/tmscoring/tmscore.py#L45-L81
def get_default_values(self): """ Make a crude estimation of the alignment using the center of mass and general C->N orientation. """ out = dict(dx=0, dy=0, dz=0, theta=0, phi=0, psi=0) dx, dy, dz, _ = np.mean(self.coord1 - self.coord2, axis=1) out['dx'] = dx ...
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Make a crude estimation of the alignment using the center of mass and general C->N orientation.
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python
train
39.459459
dead-beef/markovchain
markovchain/text/scanner.py
https://github.com/dead-beef/markovchain/blob/9bd10b2f01089341c4a875a0fa569d50caba22c7/markovchain/text/scanner.py#L282-L293
def save(self): """Convert the scanner to JSON. Returns ------- `dict` JSON data. """ data = super().save() data['expr'] = self.expr.pattern data['default_end'] = self.default_end return data
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Convert the scanner to JSON. Returns ------- `dict` JSON data.
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python
train
22.083333
daviddrysdale/python-phonenumbers
python/phonenumbers/phonenumberutil.py
https://github.com/daviddrysdale/python-phonenumbers/blob/9cc5bb4ab5e661e70789b4c64bf7a9383c7bdc20/python/phonenumbers/phonenumberutil.py#L1915-L1948
def _number_type_helper(national_number, metadata): """Return the type of the given number against the metadata""" if not _is_number_matching_desc(national_number, metadata.general_desc): return PhoneNumberType.UNKNOWN if _is_number_matching_desc(national_number, metadata.premium_rate): retu...
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Return the type of the given number against the metadata
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python
train
52.470588
textbook/atmdb
atmdb/client.py
https://github.com/textbook/atmdb/blob/cab14547d2e777a1e26c2560266365c484855789/atmdb/client.py#L246-L261
def _calculate_page_index(index, data): """Determine the location of a given index in paged data. Arguments: index (:py:class:`int`): The overall index. data: (:py:class:`dict`) The first page of data. Returns: :py:class:`tuple`: The location of that index, in the...
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Determine the location of a given index in paged data. Arguments: index (:py:class:`int`): The overall index. data: (:py:class:`dict`) The first page of data. Returns: :py:class:`tuple`: The location of that index, in the format ``(page, index_in_page)``.
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python
train
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kstaniek/condoor
condoor/hopinfo.py
https://github.com/kstaniek/condoor/blob/77c054b29d4e286c1d7aca2c74dff86b805e1fae/condoor/hopinfo.py#L16-L63
def make_hop_info_from_url(url, verify_reachability=None): """Build HopInfo object from url. It allows only telnet and ssh as a valid protocols. Args: url (str): The url string describing the node. i.e. telnet://username@1.1.1.1. The protocol, username and address portion o...
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Build HopInfo object from url. It allows only telnet and ssh as a valid protocols. Args: url (str): The url string describing the node. i.e. telnet://username@1.1.1.1. The protocol, username and address portion of url is mandatory. Port and password is optional. If ...
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python
train
38.25
log2timeline/plaso
plaso/parsers/sqlite_plugins/hangouts_messages.py
https://github.com/log2timeline/plaso/blob/9c564698d2da3ffbe23607a3c54c0582ea18a6cc/plaso/parsers/sqlite_plugins/hangouts_messages.py#L265-L290
def ParseMessagesRow(self, parser_mediator, query, row, **unused_kwargs): """Parses an Messages row. Args: parser_mediator (ParserMediator): mediates interactions between parsers and other components, such as storage and dfvfs. query (str): query that created the row. row (sqlite3.R...
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Parses an Messages row. Args: parser_mediator (ParserMediator): mediates interactions between parsers and other components, such as storage and dfvfs. query (str): query that created the row. row (sqlite3.Row): row.
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python
train
41.884615
mikedh/trimesh
trimesh/parent.py
https://github.com/mikedh/trimesh/blob/25e059bf6d4caa74f62ffd58ce4f61a90ee4e518/trimesh/parent.py#L168-L185
def bounding_primitive(self): """ The minimum volume primitive (box, sphere, or cylinder) that bounds the mesh. Returns --------- bounding_primitive : trimesh.primitives.Sphere trimesh.primitives.Box trimesh.primi...
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The minimum volume primitive (box, sphere, or cylinder) that bounds the mesh. Returns --------- bounding_primitive : trimesh.primitives.Sphere trimesh.primitives.Box trimesh.primitives.Cylinder Primitive which bounds th...
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python
train
37.222222
scott-griffiths/bitstring
bitstring.py
https://github.com/scott-griffiths/bitstring/blob/ab40ae7f0b43fe223a39b63cbc0529b09f3ef653/bitstring.py#L1679-L1685
def _setse(self, i): """Initialise bitstring with signed exponential-Golomb code for integer i.""" if i > 0: u = (i * 2) - 1 else: u = -2 * i self._setue(u)
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Initialise bitstring with signed exponential-Golomb code for integer i.
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python
train
29.428571
wavycloud/pyboto3
pyboto3/swf.py
https://github.com/wavycloud/pyboto3/blob/924957ccf994303713a4eed90b775ff2ab95b2e5/pyboto3/swf.py#L1483-L1693
def list_closed_workflow_executions(domain=None, startTimeFilter=None, closeTimeFilter=None, executionFilter=None, closeStatusFilter=None, typeFilter=None, tagFilter=None, nextPageToken=None, maximumPageSize=None, reverseOrder=None): """ Returns a list of closed workflow executions in the specified domain that ...
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Returns a list of closed workflow executions in the specified domain that meet the filtering criteria. The results may be split into multiple pages. To retrieve subsequent pages, make the call again using the nextPageToken returned by the initial call. Access Control You can use IAM policies to control this act...
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python
train
53.085308
LPgenerator/django-db-mailer
dbmail/providers/slack/push.py
https://github.com/LPgenerator/django-db-mailer/blob/217a73c21ba5c6b68738f74b2c55a6dd2c1afe35/dbmail/providers/slack/push.py#L23-L65
def send(channel, message, **kwargs): """ Site: https://slack.com API: https://api.slack.com Desc: real-time messaging """ headers = { "Content-type": "application/x-www-form-urlencoded", "User-Agent": "DBMail/%s" % get_version(), } username = from_unicode(kwargs.pop("us...
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Site: https://slack.com API: https://api.slack.com Desc: real-time messaging
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python
train
26.883721
Erotemic/utool
utool/util_path.py
https://github.com/Erotemic/utool/blob/3b27e1f4e6e6fb23cd8744af7b7195b57d99e03a/utool/util_path.py#L140-L142
def tail(fpath, n=2, trailing=True): """ Alias for path_ndir_split """ return path_ndir_split(fpath, n=n, trailing=trailing)
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python
train
43.333333
gpoulter/python-ngram
ngram.py
https://github.com/gpoulter/python-ngram/blob/f8543bdc84a4d24ac60a48b36c4034f881664491/ngram.py#L310-L339
def search(self, query, threshold=None): """Search the index for items whose key exceeds threshold similarity to the query string. :param query: returned items will have at least `threshold` \ similarity to the query string. :return: list of pairs of (item, similarity) by decre...
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Search the index for items whose key exceeds threshold similarity to the query string. :param query: returned items will have at least `threshold` \ similarity to the query string. :return: list of pairs of (item, similarity) by decreasing similarity. >>> from ngram import NGr...
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python
train
42.066667
rbit/pydtls
dtls/sslconnection.py
https://github.com/rbit/pydtls/blob/41a71fccd990347d0de5f42418fea1e4e733359c/dtls/sslconnection.py#L699-L715
def connect(self, peer_address): """Client-side UDP connection establishment This method connects this object's underlying socket. It subsequently performs a handshake if do_handshake_on_connect was set during initialization. Arguments: peer_address - address tuple of s...
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Client-side UDP connection establishment This method connects this object's underlying socket. It subsequently performs a handshake if do_handshake_on_connect was set during initialization. Arguments: peer_address - address tuple of server peer
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python
train
36.647059
jmcgeheeiv/pyfakefs
pyfakefs/fake_filesystem.py
https://github.com/jmcgeheeiv/pyfakefs/blob/6c36fb8987108107fc861fc3013620d46c7d2f9c/pyfakefs/fake_filesystem.py#L2800-L2843
def makedirs(self, dir_name, mode=PERM_DEF, exist_ok=False): """Create a leaf Fake directory and create any non-existent parent dirs. Args: dir_name: (str) Name of directory to create. mode: (int) Mode to create directory (and any necessary parent directo...
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Create a leaf Fake directory and create any non-existent parent dirs. Args: dir_name: (str) Name of directory to create. mode: (int) Mode to create directory (and any necessary parent directories) with. This argument defaults to 0o777. The umask i...
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python
train
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psychok7/django-celery-inspect
celery_inspect/api/viewsets.py
https://github.com/psychok7/django-celery-inspect/blob/26302cd71a0bb6bed8caf922b8cf15ea95aef699/celery_inspect/api/viewsets.py#L29-L52
def active_status(self, request): """ This will only work if you have django-celery installed (for now). In case you only need to work with status codes to find out if the workers are up or not. This will only work if we assume our db only contains "active workers". To us...
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This will only work if you have django-celery installed (for now). In case you only need to work with status codes to find out if the workers are up or not. This will only work if we assume our db only contains "active workers". To use this feature, you must ensure you use only named wor...
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python
train
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pmorissette/bt
bt/core.py
https://github.com/pmorissette/bt/blob/0363e6fa100d9392dd18e32e3d8379d5e83c28fa/bt/core.py#L184-L190
def weight(self): """ Current weight of the Node (with respect to the parent). """ if self.root.stale: self.root.update(self.root.now, None) return self._weight
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Current weight of the Node (with respect to the parent).
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python
train
29.428571
geometalab/pyGeoTile
pygeotile/tile.py
https://github.com/geometalab/pyGeoTile/blob/b1f44271698f5fc4d18c2add935797ed43254aa6/pygeotile/tile.py#L43-L46
def for_point(cls, point, zoom): """Creates a tile for given point""" latitude, longitude = point.latitude_longitude return cls.for_latitude_longitude(latitude=latitude, longitude=longitude, zoom=zoom)
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Creates a tile for given point
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python
train
55.5
atlassian-api/atlassian-python-api
atlassian/confluence.py
https://github.com/atlassian-api/atlassian-python-api/blob/540d269905c3e7547b666fe30c647b2d512cf358/atlassian/confluence.py#L696-L704
def get_page_as_pdf(self, page_id): """ Export page as standard pdf exporter :param page_id: Page ID :return: PDF File """ headers = self.form_token_headers url = 'spaces/flyingpdf/pdfpageexport.action?pageId={pageId}'.format(pageId=page_id) return self.ge...
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python
train
39.888889
ludeeus/GHLocalApi
ghlocalapi/utils/convert.py
https://github.com/ludeeus/GHLocalApi/blob/93abdee299c4a4b65aa9dd03c77ec34e174e3c56/ghlocalapi/utils/convert.py#L9-L21
def get_device_type(device_type=0): """Return the device type from a device_type list.""" device_types = { 0: "Unknown", 1: "Classic - BR/EDR devices", 2: "Low Energy - LE-only", 3: "Dual Mode - BR/EDR/LE" } if device_type in [0, 1, 2, 3]: return_value = device_ty...
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Return the device type from a device_type list.
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python
train
30.538462
sparklingpandas/sparklingpandas
sparklingpandas/prdd.py
https://github.com/sparklingpandas/sparklingpandas/blob/7d549df4348c979042b683c355aa778fc6d3a768/sparklingpandas/prdd.py#L59-L66
def groupby(self, *args, **kwargs): """Takes the same parameters as groupby on DataFrame. Like with groupby on DataFrame disabling sorting will result in an even larger performance improvement. This returns a Sparkling Pandas L{GroupBy} object which supports many of the same operations a...
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python
train
57.125
williamjameshandley/fgivenx
fgivenx/plot.py
https://github.com/williamjameshandley/fgivenx/blob/a16790652a3cef3cfacd4b97da62786cb66fec13/fgivenx/plot.py#L7-L106
def plot(x, y, z, ax=None, **kwargs): r""" Plot iso-probability mass function, converted to sigmas. Parameters ---------- x, y, z : numpy arrays Same as arguments to :func:`matplotlib.pyplot.contour` ax: axes object, optional :class:`matplotlib.axes._subplots.AxesSubplot` to pl...
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r""" Plot iso-probability mass function, converted to sigmas. Parameters ---------- x, y, z : numpy arrays Same as arguments to :func:`matplotlib.pyplot.contour` ax: axes object, optional :class:`matplotlib.axes._subplots.AxesSubplot` to plot the contours onto. If unsupplie...
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python
train
32.62
Koed00/django-q
django_q/cluster.py
https://github.com/Koed00/django-q/blob/c84fd11a67c9a47d821786dfcdc189bb258c6f54/django_q/cluster.py#L560-L594
def set_cpu_affinity(n, process_ids, actual=not Conf.TESTING): """ Sets the cpu affinity for the supplied processes. Requires the optional psutil module. :param int n: affinity :param list process_ids: a list of pids :param bool actual: Test workaround for Travis not supporting cpu affinity ...
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Sets the cpu affinity for the supplied processes. Requires the optional psutil module. :param int n: affinity :param list process_ids: a list of pids :param bool actual: Test workaround for Travis not supporting cpu affinity
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python
train
39.028571
mozilla/treeherder
treeherder/webapp/api/job_log_url.py
https://github.com/mozilla/treeherder/blob/cc47bdec872e5c668d0f01df89517390a164cda3/treeherder/webapp/api/job_log_url.py#L23-L28
def retrieve(self, request, project, pk=None): """ Returns a job_log_url object given its ID """ log = JobLog.objects.get(id=pk) return Response(self._log_as_dict(log))
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python
train
33.833333
zetaops/zengine
zengine/models/workflow_manager.py
https://github.com/zetaops/zengine/blob/b5bc32d3b37bca799f8985be916f04528ac79e4a/zengine/models/workflow_manager.py#L369-L383
def get_object_query_dict(self): """returns objects keys according to self.object_query_code which can be json encoded queryset filter dict or key=value set in the following format: ```"key=val, key2 = val2 , key3= value with spaces"``` Returns: (dict): Queryset filtering ...
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returns objects keys according to self.object_query_code which can be json encoded queryset filter dict or key=value set in the following format: ```"key=val, key2 = val2 , key3= value with spaces"``` Returns: (dict): Queryset filtering dicqt
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python
train
46.533333
pricingassistant/mrq
mrq/job.py
https://github.com/pricingassistant/mrq/blob/d0a5a34de9cba38afa94fb7c9e17f9b570b79a50/mrq/job.py#L263-L275
def requeue(self, queue=None, retry_count=0): """ Requeues the current job. Doesn't interrupt it """ if not queue: if not self.data or not self.data.get("queue"): self.fetch(full_data={"_id": 0, "queue": 1, "path": 1}) queue = self.data["queue"] self._sa...
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Requeues the current job. Doesn't interrupt it
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python
train
36.076923
jreinhardt/handkerchief
handkerchief/handkerchief.py
https://github.com/jreinhardt/handkerchief/blob/450291314ccbbf557b41a30ce9c523587758fe76/handkerchief/handkerchief.py#L289-L299
def collect_github_config(): """ Try load Github configuration such as usernames from the local or global git config """ github_config = {} for field in ["user", "token"]: try: github_config[field] = subprocess.check_output(["git", "config", "github.{}".format(field)]).decode('utf-8').strip() except (OSErro...
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Try load Github configuration such as usernames from the local or global git config
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python
train
34
mjirik/sed3
sed3/sed3.py
https://github.com/mjirik/sed3/blob/270c12836218fd2fa2fe192c6b6fef882322c173/sed3/sed3.py#L708-L735
def __get_slice(data, slice_number, axis=0, flipH=False, flipV=False): """ :param data: :param slice_number: :param axis: :param flipV: vertical flip :param flipH: horizontal flip :return: """ if axis == 0: data2d = data[slice_number, :, :] elif axis == 1: ...
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:param data: :param slice_number: :param axis: :param flipV: vertical flip :param flipH: horizontal flip :return:
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python
train
25.178571
tgsmith61591/pmdarima
pmdarima/arima/auto.py
https://github.com/tgsmith61591/pmdarima/blob/a133de78ba5bd68da9785b061f519ba28cd514cc/pmdarima/arima/auto.py#L565-L593
def _return_wrapper(fits, return_all, start, trace): """If the user wants to get all of the models back, this will return a list of the ARIMA models, otherwise it will just return the model. If this is called from the end of the function, ``fits`` will already be a list. We *know* that if a functio...
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If the user wants to get all of the models back, this will return a list of the ARIMA models, otherwise it will just return the model. If this is called from the end of the function, ``fits`` will already be a list. We *know* that if a function call makes it here, ``fits`` is NOT None or it would h...
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python
train
30.62069
BD2KGenomics/protect
attic/ProTECT.py
https://github.com/BD2KGenomics/protect/blob/06310682c50dcf8917b912c8e551299ff7ee41ce/attic/ProTECT.py#L1761-L1785
def get_pipeline_inputs(job, input_flag, input_file): """ Get the input file from s3 or disk, untargz if necessary and then write to file job store. :param job: job :param str input_flag: The name of the flag :param str input_file: The value passed in the config file :return: The jobstore ID for...
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python
train
52.84
deepmind/sonnet
sonnet/python/modules/base.py
https://github.com/deepmind/sonnet/blob/00612ca3178964d86b556e062694d808ff81fcca/sonnet/python/modules/base.py#L60-L66
def _get_or_create_stack(name): """Returns a thread local stack uniquified by the given name.""" stack = getattr(_LOCAL_STACKS, name, None) if stack is None: stack = [] setattr(_LOCAL_STACKS, name, stack) return stack
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python
train
32.428571
mardix/Mocha
mocha/utils.py
https://github.com/mardix/Mocha/blob/bce481cb31a0972061dd99bc548701411dcb9de3/mocha/utils.py#L103-L111
def md5(value): """ Create MD5 :param value: :return: """ m = hashlib.md5() m.update(value) return str(m.hexdigest())
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Create MD5 :param value: :return:
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python
train
15.666667
PythonCharmers/python-future
src/future/backports/xmlrpc/server.py
https://github.com/PythonCharmers/python-future/blob/c423752879acc05eebc29b0bb9909327bd5c7308/src/future/backports/xmlrpc/server.py#L177-L211
def register_instance(self, instance, allow_dotted_names=False): """Registers an instance to respond to XML-RPC requests. Only one instance can be installed at a time. If the registered instance has a _dispatch method then that method will be called with the name of the XML-RPC method ...
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Registers an instance to respond to XML-RPC requests. Only one instance can be installed at a time. If the registered instance has a _dispatch method then that method will be called with the name of the XML-RPC method and its parameters as a tuple e.g. instance._dispatch('add',...
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python
train
41.171429
yyuu/botornado
boto/manage/volume.py
https://github.com/yyuu/botornado/blob/fffb056f5ff2324d1d5c1304014cfb1d899f602e/boto/manage/volume.py#L183-L198
def get_snapshots(self): """ Returns a list of all completed snapshots for this volume ID. """ ec2 = self.get_ec2_connection() rs = ec2.get_all_snapshots() all_vols = [self.volume_id] + self.past_volume_ids snaps = [] for snapshot in rs: if sna...
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Returns a list of all completed snapshots for this volume ID.
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python
train
38.6875
quantopian/zipline
zipline/finance/ledger.py
https://github.com/quantopian/zipline/blob/77ad15e6dc4c1cbcdc133653bac8a63fc704f7fe/zipline/finance/ledger.py#L288-L305
def stats(self): """The current status of the positions. Returns ------- stats : PositionStats The current stats position stats. Notes ----- This is cached, repeated access will not recompute the stats until the stats may have changed. ...
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The current status of the positions. Returns ------- stats : PositionStats The current stats position stats. Notes ----- This is cached, repeated access will not recompute the stats until the stats may have changed.
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python
train
26.555556
Unidata/siphon
siphon/radarserver.py
https://github.com/Unidata/siphon/blob/53fb0d84fbce1c18c8e81c9e68bc81620ee0a6ac/siphon/radarserver.py#L217-L220
def parse_station_table(root): """Parse station list XML file.""" stations = [parse_xml_station(elem) for elem in root.findall('station')] return {st.id: st for st in stations}
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Parse station list XML file.
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python
train
46.25
edx/edx-enterprise
consent/migrations/0002_migrate_to_new_data_sharing_consent.py
https://github.com/edx/edx-enterprise/blob/aea91379ab0a87cd3bc798961fce28b60ee49a80/consent/migrations/0002_migrate_to_new_data_sharing_consent.py#L20-L45
def populate_data_sharing_consent(apps, schema_editor): """ Populates the ``DataSharingConsent`` model with the ``enterprise`` application's consent data. Consent data from the ``enterprise`` application come from the ``EnterpriseCourseEnrollment`` model. """ DataSharingConsent = apps.get_model('co...
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Populates the ``DataSharingConsent`` model with the ``enterprise`` application's consent data. Consent data from the ``enterprise`` application come from the ``EnterpriseCourseEnrollment`` model.
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python
valid
52.461538
ecederstrand/exchangelib
exchangelib/items.py
https://github.com/ecederstrand/exchangelib/blob/736347b337c239fcd6d592db5b29e819f753c1ba/exchangelib/items.py#L116-L126
def deregister(cls, attr_name): """ De-register an extended property that has been registered with register() """ try: field = cls.get_field_by_fieldname(attr_name) except InvalidField: raise ValueError("'%s' is not registered" % attr_name) if not ...
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De-register an extended property that has been registered with register()
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python
train
43
python-fedex-devs/python-fedex
fedex/services/track_service.py
https://github.com/python-fedex-devs/python-fedex/blob/7ea2ca80c362f5dbbc8d959ab47648c7a4ab24eb/fedex/services/track_service.py#L92-L108
def _assemble_and_send_request(self): """ Fires off the Fedex request. @warning: NEVER CALL THIS METHOD DIRECTLY. CALL send_request(), WHICH RESIDES ON FedexBaseService AND IS INHERITED. """ client = self.client # Fire off the query. return c...
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Fires off the Fedex request. @warning: NEVER CALL THIS METHOD DIRECTLY. CALL send_request(), WHICH RESIDES ON FedexBaseService AND IS INHERITED.
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python
train
38.470588
peri-source/peri
peri/states.py
https://github.com/peri-source/peri/blob/61beed5deaaf978ab31ed716e8470d86ba639867/peri/states.py#L257-L268
def temp_update(self, params, values): """ Context manager to temporarily perform a parameter update (by using the stack structure). To use: with state.temp_update(params, values): # measure the cost or something state.error """ self.p...
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python
valid
31.25
DomBennett/TaxonNamesResolver
taxon_names_resolver/manip_tools.py
https://github.com/DomBennett/TaxonNamesResolver/blob/a2556cc0f8b7442d83990715c92fdf6f787e1f41/taxon_names_resolver/manip_tools.py#L208-L241
def taxTree(taxdict): """Return taxonomic Newick tree""" # the taxonomic dictionary holds the lineage of each ident in # the same order as the taxonomy # use hierarchy to construct a taxonomic tree for rank in taxdict.taxonomy: current_level = float(taxdict.taxonomy.index(rank)) # g...
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Return taxonomic Newick tree
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python
train
48.705882
FreekingDean/insteon-hub
insteon/insteon.py
https://github.com/FreekingDean/insteon-hub/blob/afd60d0a7fa74752f29d63c9bb6ccccd46d7aa3e/insteon/insteon.py#L102-L110
def query_status(self): '''Query the hub for the status of this command''' try: data = self.api_iface._api_get(self.link) self._update_details(data) except APIError as e: print("API error: ") for key,value in e.data.iteritems: print...
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Query the hub for the status of this command
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python
train
38
mitsei/dlkit
dlkit/json_/hierarchy/sessions.py
https://github.com/mitsei/dlkit/blob/445f968a175d61c8d92c0f617a3c17dc1dc7c584/dlkit/json_/hierarchy/sessions.py#L978-L1001
def can_create_hierarchy_with_record_types(self, hierarchy_record_types): """Tests if this user can create a single ``Hierarchy`` using the desired record types. While ``HierarchyManager.getHierarchyRecordTypes()`` can be used to examine which records are supported, this method tests which ...
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Tests if this user can create a single ``Hierarchy`` using the desired record types. While ``HierarchyManager.getHierarchyRecordTypes()`` can be used to examine which records are supported, this method tests which record(s) are required for creating a specific ``Hierarchy``. Providing a...
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python
train
54.458333
bitesofcode/projexui
projexui/widgets/xganttwidget/xganttdepitem.py
https://github.com/bitesofcode/projexui/blob/f18a73bec84df90b034ca69b9deea118dbedfc4d/projexui/widgets/xganttwidget/xganttdepitem.py#L42-L58
def paint( self, painter, option, widget ): """ Overloads the paint method from QGraphicsPathItem to \ handle custom drawing of the path using this items \ pens and polygons. :param painter <QPainter> :param option <QGraphicsItemStyleOption> ...
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python
train
38.705882
briancappello/flask-unchained
flask_unchained/bundles/controller/templates.py
https://github.com/briancappello/flask-unchained/blob/4d536cb90e2cc4829c1c05f2c74d3e22901a1399/flask_unchained/bundles/controller/templates.py#L89-L148
def explain_template_loading_attempts(app, template, attempts): """ This should help developers understand what failed. Mostly the same as :func:`flask.debughelpers.explain_template_loading_attempts`, except here we've extended it to support showing what :class:`UnchainedJinjaLoader` is doing. """ ...
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python
train
37.783333
bhmm/bhmm
bhmm/hmm/generic_sampled_hmm.py
https://github.com/bhmm/bhmm/blob/9804d18c2ddb684fb4d90b544cc209617a89ca9a/bhmm/hmm/generic_sampled_hmm.py#L162-L167
def eigenvectors_left_samples(self): r""" Samples of the left eigenvectors of the hidden transition matrix """ res = np.empty((self.nsamples, self.nstates, self.nstates), dtype=config.dtype) for i in range(self.nsamples): res[i, :, :] = self._sampled_hmms[i].eigenvectors_left ...
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r""" Samples of the left eigenvectors of the hidden transition matrix
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python
train
54.333333
mitodl/pylti
pylti/common.py
https://github.com/mitodl/pylti/blob/18a608282e0d5bc941beb2eaaeea3b7ad484b399/pylti/common.py#L473-L485
def name(self): # pylint: disable=no-self-use """ Name returns user's name or user's email or user_id :return: best guess of name to use to greet user """ if 'lis_person_sourcedid' in self.session: return self.session['lis_person_sourcedid'] elif 'lis_person_...
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Name returns user's name or user's email or user_id :return: best guess of name to use to greet user
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python
train
41.076923
johnnoone/facts
facts/grafts/system_grafts.py
https://github.com/johnnoone/facts/blob/82d38a46c15d9c01200445526f4c0d1825fc1e51/facts/grafts/system_grafts.py#L26-L33
def os_info(): """Returns os data. """ return { 'uname': dict(platform.uname()._asdict()), 'path': os.environ.get('PATH', '').split(':'), 'shell': os.environ.get('SHELL', '/bin/sh'), }
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Returns os data.
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python
train
27.125
xav-b/pyconsul
pyconsul/utils.py
https://github.com/xav-b/pyconsul/blob/06ce3b921d01010c19643424486bea4b22196076/pyconsul/utils.py#L25-L43
def safe_request(fct): ''' Return json messages instead of raising errors ''' def inner(*args, **kwargs): ''' decorator ''' try: _data = fct(*args, **kwargs) except requests.exceptions.ConnectionError as error: return {'error': str(error), 'status': 404} ...
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python
train
30.684211
shoyer/h5netcdf
h5netcdf/core.py
https://github.com/shoyer/h5netcdf/blob/3ae35cd58297281a1dc69c46fb0b315a0007ac2b/h5netcdf/core.py#L550-L575
def resize_dimension(self, dimension, size): """ Resize a dimension to a certain size. It will pad with the underlying HDF5 data sets' fill values (usually zero) where necessary. """ if self.dimensions[dimension] is not None: raise ValueError("Dimension '%s' ...
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Resize a dimension to a certain size. It will pad with the underlying HDF5 data sets' fill values (usually zero) where necessary.
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python
train
37.346154
hobson/pug-dj
pug/dj/miner/views.py
https://github.com/hobson/pug-dj/blob/55678b08755a55366ce18e7d3b8ea8fa4491ab04/pug/dj/miner/views.py#L126-L128
def render_to_response(self, context, indent=None): "Returns a JSON response containing 'context' as payload" return self.get_json_response(self.convert_context_to_json(context, indent=indent))
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Returns a JSON response containing 'context' as payload
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python
train
69
chrislit/abydos
abydos/stemmer/_snowball_dutch.py
https://github.com/chrislit/abydos/blob/165466b3ff6afd8024a4c8660421b0c4e7773db9/abydos/stemmer/_snowball_dutch.py#L52-L72
def _undouble(self, word): """Undouble endings -kk, -dd, and -tt. Parameters ---------- word : str The word to stem Returns ------- str The word with doubled endings undoubled """ if ( len(word) > 1 ...
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Undouble endings -kk, -dd, and -tt. Parameters ---------- word : str The word to stem Returns ------- str The word with doubled endings undoubled
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python
valid
20.380952
SheffieldML/GPy
GPy/likelihoods/gaussian.py
https://github.com/SheffieldML/GPy/blob/54c32d79d289d622fb18b898aee65a2a431d90cf/GPy/likelihoods/gaussian.py#L316-L327
def samples(self, gp, Y_metadata=None): """ Returns a set of samples of observations based on a given value of the latent variable. :param gp: latent variable """ orig_shape = gp.shape gp = gp.flatten() #orig_shape = gp.shape gp = gp.flatten() Ysi...
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Returns a set of samples of observations based on a given value of the latent variable. :param gp: latent variable
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python
train
38.25
ask/redish
redish/types.py
https://github.com/ask/redish/blob/4845f8d5e12fd953ecad624b4e1e89f79a082a3e/redish/types.py#L322-L326
def range_by_score(self, min, max, num=None, withscores=False): """Return all the elements with score >= min and score <= max (a range query) from the sorted set.""" return self.client.zrangebyscore(self.name, min, max, num=num, withscores=withscores)
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Return all the elements with score >= min and score <= max (a range query) from the sorted set.
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python
train
62.4
push-things/wallabag_api
wallabag_api/wallabag.py
https://github.com/push-things/wallabag_api/blob/8d1e10a6ebc03d1ac9af2b38b57eb69f29b4216e/wallabag_api/wallabag.py#L118-L130
def __get_attr(what, type_attr, value_attr, **kwargs): """ get the value of a parm :param what: string parm :param type_attr: type of parm :param value_attr: :param kwargs: :return: value of the parm """ if what in kwargs: value = int(k...
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get the value of a parm :param what: string parm :param type_attr: type of parm :param value_attr: :param kwargs: :return: value of the parm
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python
train
32.692308
endeepak/pungi
pungi/matchers.py
https://github.com/endeepak/pungi/blob/4c90e0959f3498d0be85aa1e8e3ee4348be45593/pungi/matchers.py#L25-L29
def message(self): ''' Override this to provide failure message''' name = self.__class__.__name__ return "{0} {1}".format(humanize(name), pp(*self.expectedArgs, **self.expectedKwArgs))
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Override this to provide failure message
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python
train
47.2
odlgroup/odl
odl/operator/pspace_ops.py
https://github.com/odlgroup/odl/blob/b8443f6aca90e191ba36c91d32253c5a36249a6c/odl/operator/pspace_ops.py#L230-L283
def _convert_to_spmatrix(operators): """Convert an array-like object of operators to a sparse matrix.""" # Lazy import to improve `import odl` time import scipy.sparse # Convert ops to sparse representation. This is not trivial because # operators can be indexable themselves and...
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Convert an array-like object of operators to a sparse matrix.
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python
train
42.907407
Nic30/hwt
hwt/serializer/systemC/statements.py
https://github.com/Nic30/hwt/blob/8cbb399e326da3b22c233b98188a9d08dec057e6/hwt/serializer/systemC/statements.py#L43-L58
def HWProcess(cls, proc, ctx): """ Serialize HWProcess instance :param scope: name scope to prevent name collisions """ body = proc.statements childCtx = ctx.withIndent() statemets = [cls.asHdl(s, childCtx) for s in body] proc.name = ctx.scope.checkedName...
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Serialize HWProcess instance :param scope: name scope to prevent name collisions
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python
test
29.625
knipknap/exscript
Exscript/account.py
https://github.com/knipknap/exscript/blob/72718eee3e87b345d5a5255be9824e867e42927b/Exscript/account.py#L508-L518
def get_account_from_name(self, name): """ Returns the account with the given name. :type name: string :param name: The name of the account. """ for account in self.accounts: if account.get_name() == name: return account return None
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Returns the account with the given name. :type name: string :param name: The name of the account.
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python
train
28