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saltstack/salt
salt/auth/file.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/auth/file.py#L193-L206
def _htpasswd(username, password, **kwargs): ''' Provide authentication via Apache-style htpasswd files ''' from passlib.apache import HtpasswdFile pwfile = HtpasswdFile(kwargs['filename']) # passlib below version 1.6 uses 'verify' function instead of 'check_password' if salt.utils.versio...
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Provide authentication via Apache-style htpasswd files
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python
train
34
LionelAuroux/pyrser
pyrser/ast/state.py
https://github.com/LionelAuroux/pyrser/blob/f153a97ef2b6bf915a1ed468c0252a9a59b754d5/pyrser/ast/state.py#L92-L99
def to_png_file(self, fname: str): """ write a '.png' file. """ cmd = pipes.Template() cmd.append('dot -Tpng > %s' % fname, '-.') with cmd.open('pipefile', 'w') as f: f.write(self.to_dot())
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write a '.png' file.
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python
test
30.25
webrecorder/pywb
pywb/apps/frontendapp.py
https://github.com/webrecorder/pywb/blob/77f8bb647639dd66f6b92b7a9174c28810e4b1d9/pywb/apps/frontendapp.py#L641-L666
def load(self, coll): """Load and receive the metadata associated with a collection. If the metadata for the collection is not cached yet its metadata file is read in and stored. If the cache has seen the collection before the mtime of the metadata file is checked and if it is more recent ...
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Load and receive the metadata associated with a collection. If the metadata for the collection is not cached yet its metadata file is read in and stored. If the cache has seen the collection before the mtime of the metadata file is checked and if it is more recent than the cached time, the cach...
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python
train
36.038462
svartalf/python-2gis
dgis/__init__.py
https://github.com/svartalf/python-2gis/blob/6eccd6073c99494b7abf20b38a5455cbd55d6420/dgis/__init__.py#L89-L109
def search_in_rubric(self, **kwargs): """Firms search in rubric http://api.2gis.ru/doc/firms/searches/searchinrubric/ """ point = kwargs.pop('point', False) if point: kwargs['point'] = '%s,%s' % point bound = kwargs.pop('bound', False) if bound: ...
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Firms search in rubric http://api.2gis.ru/doc/firms/searches/searchinrubric/
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python
train
28.285714
larsmans/seqlearn
doc/hash-tree.py
https://github.com/larsmans/seqlearn/blob/32d4bfaebdd877733f180ea6072e8fc1266bc559/doc/hash-tree.py#L35-L45
def hash_dir(path): """Write directory at path to Git index, return its SHA1 as a string.""" dir_hash = {} for root, dirs, files in os.walk(path, topdown=False): f_hash = ((f, hash_file(join(root, f))) for f in files) d_hash = ((d, dir_hash[join(root, d)]) for d in dirs) # split+joi...
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Write directory at path to Git index, return its SHA1 as a string.
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python
train
40.727273
blockstack/blockstack-core
blockstack/lib/operations/namespacereveal.py
https://github.com/blockstack/blockstack-core/blob/1dcfdd39b152d29ce13e736a6a1a0981401a0505/blockstack/lib/operations/namespacereveal.py#L66-L107
def namespacereveal_sanity_check( namespace_id, version, lifetime, coeff, base, bucket_exponents, nonalpha_discount, no_vowel_discount ): """ Verify the validity of a namespace reveal. Return True if valid Raise an Exception if not valid. """ # sanity check if not is_b40( namespace_id ) or "+" in ...
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Verify the validity of a namespace reveal. Return True if valid Raise an Exception if not valid.
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python
train
45.309524
sernst/cauldron
cauldron/cli/commands/run/__init__.py
https://github.com/sernst/cauldron/blob/4086aec9c038c402ea212c79fe8bd0d27104f9cf/cauldron/cli/commands/run/__init__.py#L229-L322
def run_local( context: cli.CommandContext, project: projects.Project, project_steps: typing.List[projects.ProjectStep], force: bool, continue_after: bool, single_step: bool, limit: int, print_status: bool, skip_library_reload: bool = False ) -> en...
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Execute the run command locally within this cauldron environment :param context: :param project: :param project_steps: :param force: :param continue_after: :param single_step: :param limit: :param print_status: :param skip_library_reload: Whether or not to skip reloading all...
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python
train
29.542553
IAMconsortium/pyam
pyam/iiasa.py
https://github.com/IAMconsortium/pyam/blob/4077929ca6e7be63a0e3ecf882c5f1da97b287bf/pyam/iiasa.py#L256-L286
def read_iiasa(name, meta=False, **kwargs): """ Query an IIASA database. See Connection.query() for more documentation Parameters ---------- name : str A valid IIASA database name, see pyam.iiasa.valid_connection_names() meta : bool or list of strings If not False, also include ...
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Query an IIASA database. See Connection.query() for more documentation Parameters ---------- name : str A valid IIASA database name, see pyam.iiasa.valid_connection_names() meta : bool or list of strings If not False, also include metadata indicators (or subset if provided). kwargs ...
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python
train
33.870968
henzk/featuremonkey
featuremonkey/composer.py
https://github.com/henzk/featuremonkey/blob/e44414fc68427bcd71ad33ec2d816da0dd78eefa/featuremonkey/composer.py#L275-L320
def select(self, *features): """ selects the features given as string e.g passing 'hello' and 'world' will result in imports of 'hello' and 'world'. Then, if possible 'hello.feature' and 'world.feature' are imported and select is called in each feature module. ...
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selects the features given as string e.g passing 'hello' and 'world' will result in imports of 'hello' and 'world'. Then, if possible 'hello.feature' and 'world.feature' are imported and select is called in each feature module.
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python
train
43.608696
saltstack/salt
salt/modules/zypperpkg.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/zypperpkg.py#L729-L858
def list_pkgs(versions_as_list=False, root=None, includes=None, **kwargs): ''' List the packages currently installed as a dict. By default, the dict contains versions as a comma separated string:: {'<package_name>': '<version>[,<version>...]'} versions_as_list: If set to true, the vers...
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List the packages currently installed as a dict. By default, the dict contains versions as a comma separated string:: {'<package_name>': '<version>[,<version>...]'} versions_as_list: If set to true, the versions are provided as a list {'<package_name>': ['<version>', '<version>']} ...
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python
train
34.361538
log2timeline/plaso
plaso/analysis/viper.py
https://github.com/log2timeline/plaso/blob/9c564698d2da3ffbe23607a3c54c0582ea18a6cc/plaso/analysis/viper.py#L202-L214
def SetProtocol(self, protocol): """Sets the protocol that will be used to query Viper. Args: protocol (str): protocol to use to query Viper. Either 'http' or 'https'. Raises: ValueError: If an invalid protocol is selected. """ protocol = protocol.lower().strip() if protocol not in...
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Sets the protocol that will be used to query Viper. Args: protocol (str): protocol to use to query Viper. Either 'http' or 'https'. Raises: ValueError: If an invalid protocol is selected.
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python
train
33.692308
sorgerlab/indra
indra/tools/assemble_corpus.py
https://github.com/sorgerlab/indra/blob/79a70415832c5702d7a820c7c9ccc8e25010124b/indra/tools/assemble_corpus.py#L122-L201
def merge_groundings(stmts_in): """Gather and merge original grounding information from evidences. Each Statement's evidences are traversed to find original grounding information. These groundings are then merged into an overall consensus grounding dict with as much detail as possible. The current...
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Gather and merge original grounding information from evidences. Each Statement's evidences are traversed to find original grounding information. These groundings are then merged into an overall consensus grounding dict with as much detail as possible. The current implementation is only applicable to S...
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python
train
45.425
jleinonen/pytmatrix
pytmatrix/scatter.py
https://github.com/jleinonen/pytmatrix/blob/8803507fe5332786feab105fa74acf63e7121718/pytmatrix/scatter.py#L100-L133
def ext_xsect(scatterer, h_pol=True): """Extinction cross section for the current setup, with polarization. Args: scatterer: a Scatterer instance. h_pol: If True (default), use horizontal polarization. If False, use vertical polarization. Returns: The extinction cross s...
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Extinction cross section for the current setup, with polarization. Args: scatterer: a Scatterer instance. h_pol: If True (default), use horizontal polarization. If False, use vertical polarization. Returns: The extinction cross section.
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python
train
29.941176
log2timeline/dfvfs
dfvfs/vfs/zip_file_system.py
https://github.com/log2timeline/dfvfs/blob/2b3ccd115f9901d89f383397d4a1376a873c83c4/dfvfs/vfs/zip_file_system.py#L80-L111
def FileEntryExistsByPathSpec(self, path_spec): """Determines if a file entry for a path specification exists. Args: path_spec (PathSpec): path specification of the file entry. Returns: bool: True if the file entry exists. """ location = getattr(path_spec, 'location', None) if (lo...
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Determines if a file entry for a path specification exists. Args: path_spec (PathSpec): path specification of the file entry. Returns: bool: True if the file entry exists.
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python
train
25.4375
saltstack/salt
salt/modules/boto_lambda.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/boto_lambda.py#L761-L785
def describe_alias(FunctionName, Name, region=None, key=None, keyid=None, profile=None): ''' Given a function name and alias name describe the properties of the alias. Returns a dictionary of interesting properties. CLI Example: .. code-block:: bash salt myminion boto_...
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Given a function name and alias name describe the properties of the alias. Returns a dictionary of interesting properties. CLI Example: .. code-block:: bash salt myminion boto_lambda.describe_alias myalias
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python
train
30.88
romansalin/django-seo2
djangoseo/utils.py
https://github.com/romansalin/django-seo2/blob/f788699a88e286ab9a698759d9b42f57852865d8/djangoseo/utils.py#L116-L122
def _get_seo_content_types(seo_models): """Returns a list of content types from the models defined in settings.""" try: return [ContentType.objects.get_for_model(m).id for m in seo_models] except Exception: # previously caught DatabaseError # Return an empty list if this is called too early...
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Returns a list of content types from the models defined in settings.
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python
train
47.428571
mk-fg/python-pulse-control
pulsectl/pulsectl.py
https://github.com/mk-fg/python-pulse-control/blob/902d5e9e5591b89c356e5194a370212e23fb0e93/pulsectl/pulsectl.py#L805-L815
def set_poll_func(self, func, func_err_handler=None): '''Can be used to integrate pulse client into existing eventloop. Function will be passed a list of pollfd structs and timeout value (seconds, float), which it is responsible to use and modify (set poll flags) accordingly, returning int value >= 0 with ...
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Can be used to integrate pulse client into existing eventloop. Function will be passed a list of pollfd structs and timeout value (seconds, float), which it is responsible to use and modify (set poll flags) accordingly, returning int value >= 0 with number of fds that had any new events within timeout. fu...
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python
train
72.272727
QualiSystems/cloudshell-networking-devices
cloudshell/devices/standards/networking/configuration_attributes_structure.py
https://github.com/QualiSystems/cloudshell-networking-devices/blob/009aab33edb30035b52fe10dbb91db61c95ba4d9/cloudshell/devices/standards/networking/configuration_attributes_structure.py#L213-L233
def create_networking_resource_from_context(shell_name, supported_os, context): """ Creates an instance of Networking Resource by given context :param shell_name: Shell Name :type shell_name: str :param supported_os: list of supported OS :type supported_os: list :param context: cloudshell.sh...
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python
train
38.904762
secdev/scapy
scapy/layers/ntp.py
https://github.com/secdev/scapy/blob/3ffe757c184017dd46464593a8f80f85abc1e79a/scapy/layers/ntp.py#L199-L208
def pre_dissect(self, s): """ Check that the payload is long enough to build a NTP packet. """ length = len(s) if length < _NTP_PACKET_MIN_SIZE: err = " ({}".format(length) + " is < _NTP_PACKET_MIN_SIZE " err += "({})).".format(_NTP_PACKET_MIN_SIZE) ...
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Check that the payload is long enough to build a NTP packet.
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python
train
36.9
OpenKMIP/PyKMIP
kmip/core/messages/payloads/query.py
https://github.com/OpenKMIP/PyKMIP/blob/b51c5b044bd05f8c85a1d65d13a583a4d8fc1b0e/kmip/core/messages/payloads/query.py#L694-L882
def read(self, input_buffer, kmip_version=enums.KMIPVersion.KMIP_1_0): """ Read the data encoding the QueryResponsePayload object and decode it into its constituent parts. Args: input_buffer (Stream): A data stream containing encoded object data, supporting a...
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python
test
39.920635
475Cumulus/TBone
tbone/dispatch/signals.py
https://github.com/475Cumulus/TBone/blob/5a6672d8bbac449a0ab9e99560609f671fe84d4d/tbone/dispatch/signals.py#L58-L70
async def send(self, sender, **kwargs): ''' send a signal from the sender to all connected receivers ''' if not self.receivers: return [] responses = [] futures = [] for receiver in self._get_receivers(sender): method = receiver() if callable(m...
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send a signal from the sender to all connected receivers
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python
train
37.538462
sassoo/goldman
goldman/deserializers/comma_sep.py
https://github.com/sassoo/goldman/blob/b72540c9ad06b5c68aadb1b4fa8cb0b716260bf2/goldman/deserializers/comma_sep.py#L51-L73
def _parse_keys(row, line_num): """ Perform some sanity checks on they keys Each key in the row should not be named None cause (that's an overrun). A key named `type` MUST be present on the row & have a string value. :param row: dict :param line_num: int """ ...
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python
train
35.26087
openstack/quark
quark/tools/async_worker.py
https://github.com/openstack/quark/blob/1112e6a66917d3e98e44cb7b33b107fd5a74bb2e/quark/tools/async_worker.py#L99-L113
def serve_rpc(self): """Launches configured # of workers per loaded plugin.""" if cfg.CONF.QUARK_ASYNC.rpc_workers < 1: cfg.CONF.set_override('rpc_workers', 1, "QUARK_ASYNC") try: rpc = service.RpcWorker(self.plugins) launcher = common_service.ProcessLauncher...
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Launches configured # of workers per loaded plugin.
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python
valid
43.133333
cloud9ers/gurumate
environment/lib/python2.7/site-packages/IPython/parallel/apps/baseapp.py
https://github.com/cloud9ers/gurumate/blob/075dc74d1ee62a8c6b7a8bf2b271364f01629d1e/environment/lib/python2.7/site-packages/IPython/parallel/apps/baseapp.py#L202-L218
def write_pid_file(self, overwrite=False): """Create a .pid file in the pid_dir with my pid. This must be called after pre_construct, which sets `self.pid_dir`. This raises :exc:`PIDFileError` if the pid file exists already. """ pid_file = os.path.join(self.profile_dir.pid_dir, ...
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Create a .pid file in the pid_dir with my pid. This must be called after pre_construct, which sets `self.pid_dir`. This raises :exc:`PIDFileError` if the pid file exists already.
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python
test
47
zetaops/zengine
zengine/middlewares.py
https://github.com/zetaops/zengine/blob/b5bc32d3b37bca799f8985be916f04528ac79e4a/zengine/middlewares.py#L26-L45
def process_response(self, request, response, resource): """ Do response processing """ origin = request.get_header('Origin') if not settings.DEBUG: if origin in settings.ALLOWED_ORIGINS or not origin: response.set_header('Access-Control-Allow-Origin',...
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Do response processing
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python
train
51.8
senaite/senaite.core
bika/lims/upgrade/v01_03_000.py
https://github.com/senaite/senaite.core/blob/7602ce2ea2f9e81eb34e20ce17b98a3e70713f85/bika/lims/upgrade/v01_03_000.py#L2213-L2233
def get_workflow_actions_for(brain_or_object): """Returns a list with the actions (transitions) supported by the workflows the object pass in is bound to. Note it returns all actions, not only those allowed for the object based on its current state and permissions. """ portal_type = api.get_portal_t...
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Returns a list with the actions (transitions) supported by the workflows the object pass in is bound to. Note it returns all actions, not only those allowed for the object based on its current state and permissions.
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python
train
41.142857
bcbio/bcbio-nextgen
bcbio/structural/__init__.py
https://github.com/bcbio/bcbio-nextgen/blob/6a9348c0054ccd5baffd22f1bb7d0422f6978b20/bcbio/structural/__init__.py#L174-L187
def run(samples, run_parallel, stage): """Run structural variation detection. The stage indicates which level of structural variant calling to run. - initial, callers that can be used in subsequent structural variation steps (cnvkit -> lumpy) - standard, regular batch calling - ensemble, post...
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Run structural variation detection. The stage indicates which level of structural variant calling to run. - initial, callers that can be used in subsequent structural variation steps (cnvkit -> lumpy) - standard, regular batch calling - ensemble, post-calling, combine other callers or prioritize ...
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python
train
54.642857
bio2bel/bio2bel
src/bio2bel/models.py
https://github.com/bio2bel/bio2bel/blob/d80762d891fa18b248709ff0b0f97ebb65ec64c2/src/bio2bel/models.py#L124-L131
def count(cls, session: Optional[Session] = None) -> int: """Count all actions.""" if session is None: session = _make_session() count = session.query(cls).count() session.close() return count
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Count all actions.
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python
valid
29.75
saltstack/salt
salt/modules/dockermod.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/dockermod.py#L5651-L5684
def restart(name, timeout=10): ''' Restarts a container name Container name or ID timeout : 10 Timeout in seconds after which the container will be killed (if it has not yet gracefully shut down) **RETURN DATA** A dictionary will be returned, containing the following...
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Restarts a container name Container name or ID timeout : 10 Timeout in seconds after which the container will be killed (if it has not yet gracefully shut down) **RETURN DATA** A dictionary will be returned, containing the following keys: - ``status`` - A dictionary sho...
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python
train
26.058824
google/grr
grr/core/grr_response_core/lib/rdfvalues/paths.py
https://github.com/google/grr/blob/5cef4e8e2f0d5df43ea4877e9c798e0bf60bfe74/grr/core/grr_response_core/lib/rdfvalues/paths.py#L110-L123
def Append(self, component=None, **kwarg): """Append a new pathspec component to this pathspec.""" if component is None: component = self.__class__(**kwarg) if self.HasField("pathtype"): self.last.nested_path = component else: for k, v in iteritems(kwarg): setattr(self, k, v) ...
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Append a new pathspec component to this pathspec.
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python
train
26.428571
vecnet/vecnet.openmalaria
vecnet/openmalaria/scenario/interventions.py
https://github.com/vecnet/vecnet.openmalaria/blob/795bc9d1b81a6c664f14879edda7a7c41188e95a/vecnet/openmalaria/scenario/interventions.py#L182-L194
def changeHS(self): """ Change health system interventions https://github.com/SwissTPH/openmalaria/wiki/GeneratedSchema32Doc#change-health-system Returns: list of HealthSystems together with timestep when they are applied """ health_systems = [] change_hs = self.e...
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Change health system interventions https://github.com/SwissTPH/openmalaria/wiki/GeneratedSchema32Doc#change-health-system Returns: list of HealthSystems together with timestep when they are applied
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python
train
44.692308
DeepHorizons/iarm
iarm/arm_instructions/memory.py
https://github.com/DeepHorizons/iarm/blob/b913c9fd577b793a6bbced78b78a5d8d7cd88de4/iarm/arm_instructions/memory.py#L336-L357
def PUSH(self, params): """ PUSH {RPushList} Push to the stack from a list of registers List must contain only low registers or LR """ # TODO what registers are allowed to PUSH to? Low registers and LR # TODO PUSH should reverse the list, not POP RPushLis...
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PUSH {RPushList} Push to the stack from a list of registers List must contain only low registers or LR
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python
train
36.909091
m32/endesive
endesive/pdf/fpdf/fpdf.py
https://github.com/m32/endesive/blob/973091dc69847fe2df594c80ac9235a8d08460ff/endesive/pdf/fpdf/fpdf.py#L248-L306
def add_page(self, orientation=''): "Start a new page" if(self.state==0): self.open() family=self.font_family if self.underline: style = self.font_style + 'U' else: style = self.font_style size=self.font_size_pt lw=self.line_wid...
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Start a new page
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python
train
27.457627
mdavidsaver/p4p
src/p4p/nt/__init__.py
https://github.com/mdavidsaver/p4p/blob/c5e45eac01edfdad9cc2857bc283c7f2695802b8/src/p4p/nt/__init__.py#L220-L238
def unwrap(value): """Iterate an NTTable :returns: An iterator yielding an OrderedDict for each column """ ret = [] # build lists of column names, and value lbl, cols = [], [] for cname, cval in value.value.items(): lbl.append(cname) cols...
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Iterate an NTTable :returns: An iterator yielding an OrderedDict for each column
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python
train
28.105263
yatiml/yatiml
yatiml/helpers.py
https://github.com/yatiml/yatiml/blob/4f55c058b72388350f0af3076ac3ea9bc1c142b0/yatiml/helpers.py#L600-L604
def require_mapping(self) -> None: """Require the node to be a mapping.""" if not isinstance(self.yaml_node, yaml.MappingNode): raise RecognitionError(('{}{}A mapping is required here').format( self.yaml_node.start_mark, os.linesep))
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Require the node to be a mapping.
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python
train
54.6
inasafe/inasafe
safe/report/extractors/analysis_question.py
https://github.com/inasafe/inasafe/blob/831d60abba919f6d481dc94a8d988cc205130724/safe/report/extractors/analysis_question.py#L11-L44
def analysis_question_extractor(impact_report, component_metadata): """Extracting analysis question from the impact layer. :param impact_report: the impact report that acts as a proxy to fetch all the data that extractor needed :type impact_report: safe.report.impact_report.ImpactReport :param...
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Extracting analysis question from the impact layer. :param impact_report: the impact report that acts as a proxy to fetch all the data that extractor needed :type impact_report: safe.report.impact_report.ImpactReport :param component_metadata: the component metadata. Used to obtain informa...
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python
train
34.882353
Kaggle/kaggle-api
kaggle/models/dataset_new_request.py
https://github.com/Kaggle/kaggle-api/blob/65f14b1386470c5784d4753e491478e7537660d9/kaggle/models/dataset_new_request.py#L194-L209
def license_name(self, license_name): """Sets the license_name of this DatasetNewRequest. The license that should be associated with the dataset # noqa: E501 :param license_name: The license_name of this DatasetNewRequest. # noqa: E501 :type: str """ allowed_values = ...
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Sets the license_name of this DatasetNewRequest. The license that should be associated with the dataset # noqa: E501 :param license_name: The license_name of this DatasetNewRequest. # noqa: E501 :type: str
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python
train
47.75
geronimp/graftM
graftm/getaxnseq.py
https://github.com/geronimp/graftM/blob/c82576517290167f605fd0bc4facd009cee29f48/graftm/getaxnseq.py#L106-L203
def write_taxonomy_and_seqinfo_files(self, taxonomies, output_taxonomy_file, output_seqinfo_file): '''Write out taxonomy and seqinfo files as required by taxtastic from known taxonomies Parameters ---------- taxonomies: hash of taxon_id to array of taxonomic ...
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Write out taxonomy and seqinfo files as required by taxtastic from known taxonomies Parameters ---------- taxonomies: hash of taxon_id to array of taxonomic information output_taxonomy_file: write taxtastic-compatible 'taxonomy' file here ...
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python
train
46.265306
bcbio/bcbio-nextgen
bcbio/structural/shared.py
https://github.com/bcbio/bcbio-nextgen/blob/6a9348c0054ccd5baffd22f1bb7d0422f6978b20/bcbio/structural/shared.py#L25-L39
def finalize_sv(orig_vcf, data, items): """Finalize structural variants, adding effects and splitting if needed. """ paired = vcfutils.get_paired(items) # For paired/somatic, attach combined calls to tumor sample if paired: sample_vcf = orig_vcf if paired.tumor_name == dd.get_sample_name(dat...
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Finalize structural variants, adding effects and splitting if needed.
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python
train
46.666667
Jajcus/pyxmpp2
pyxmpp2/roster.py
https://github.com/Jajcus/pyxmpp2/blob/14a40a3950910a9cd008b55f0d8905aa0186ce18/pyxmpp2/roster.py#L856-L884
def update_item(self, jid, name = NO_CHANGE, groups = NO_CHANGE, callback = None, error_callback = None): """Modify a contact in the roster. :Parameters: - `jid`: contact's jid - `name`: a new name for the contact - `groups`: a sequenc...
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Modify a contact in the roster. :Parameters: - `jid`: contact's jid - `name`: a new name for the contact - `groups`: a sequence of group names the contact should belong to - `callback`: function to call when the request succeeds. It should accept a ...
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python
valid
41.586207
ianmiell/shutit
shutit_login_stack.py
https://github.com/ianmiell/shutit/blob/19cd64cdfb23515b106b40213dccff4101617076/shutit_login_stack.py#L85-L99
def has_blocking_background_send(self): """Check whether any blocking background commands are waiting to run. If any are, return True. If none are, return False. """ for background_object in self.background_objects: # If it's running, or not started yet, it should block other tasks. if background_ob...
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Check whether any blocking background commands are waiting to run. If any are, return True. If none are, return False.
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python
train
61.6
facebook/pyre-check
sapp/sapp/base_parser.py
https://github.com/facebook/pyre-check/blob/4a9604d943d28ef20238505a51acfb1f666328d7/sapp/sapp/base_parser.py#L109-L180
def analysis_output_to_dict_entries( self, inputfile: AnalysisOutput, previous_inputfile: Optional[AnalysisOutput], previous_issue_handles: Optional[AnalysisOutput], linemapfile: Optional[str], ) -> DictEntries: """Here we take input generators and return a dict with ...
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Here we take input generators and return a dict with issues, preconditions, and postconditions separated. If there is only a single generator file, it's simple. If we also pass in a generator from a previous inputfile then there are a couple extra steps: 1. If an issue was seen in the p...
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python
train
43.444444
Chyroc/WechatSogou
wechatsogou/tools.py
https://github.com/Chyroc/WechatSogou/blob/2e0e9886f555fd8bcfc7ae9718ced6ce955cd24a/wechatsogou/tools.py#L73-L95
def _replace_str_html(s): """替换html‘&quot;’等转义内容为正常内容 Args: s: 文字内容 Returns: s: 处理反转义后的文字 """ html_str_list = [ ('&#39;', '\''), ('&quot;', '"'), ('&amp;', '&'), ('&yen;', '¥'), ('amp;', ''), ('&lt;', '<'), ('&gt;', '>'), ...
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python
train
18.173913
cga-harvard/Hypermap-Registry
hypermap/aggregator/utils.py
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/utils.py#L335-L349
def service_url_parse(url): """ Function that parses from url the service and folder of services. """ endpoint = get_sanitized_endpoint(url) url_split_list = url.split(endpoint + '/') if len(url_split_list) != 0: url_split_list = url_split_list[1].split('/') else: raise Excep...
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Function that parses from url the service and folder of services.
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python
train
33
saltstack/salt
salt/cloud/clouds/joyent.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/cloud/clouds/joyent.py#L785-L802
def _get_proto(): ''' Checks configuration to see whether the user has SSL turned on. Default is: .. code-block:: yaml use_ssl: True ''' use_ssl = config.get_cloud_config_value( 'use_ssl', get_configured_provider(), __opts__, search_global=False, def...
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Checks configuration to see whether the user has SSL turned on. Default is: .. code-block:: yaml use_ssl: True
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python
train
21.277778
kubernetes-client/python
kubernetes/client/apis/certificates_v1beta1_api.py
https://github.com/kubernetes-client/python/blob/5e512ff564c244c50cab780d821542ed56aa965a/kubernetes/client/apis/certificates_v1beta1_api.py#L1157-L1180
def replace_certificate_signing_request_approval(self, name, body, **kwargs): """ replace approval of the specified CertificateSigningRequest This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True >>> thread = api...
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python
train
70.541667
sibirrer/lenstronomy
lenstronomy/LensModel/single_plane.py
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LensModel/single_plane.py#L84-L109
def alpha(self, x, y, kwargs, k=None): """ deflection angles :param x: x-position (preferentially arcsec) :type x: numpy array :param y: y-position (preferentially arcsec) :type y: numpy array :param kwargs: list of keyword arguments of lens model parameters matc...
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deflection angles :param x: x-position (preferentially arcsec) :type x: numpy array :param y: y-position (preferentially arcsec) :type y: numpy array :param kwargs: list of keyword arguments of lens model parameters matching the lens model classes :param k: only evaluate ...
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python
train
41.076923
inveniosoftware/invenio-pidrelations
invenio_pidrelations/serializers/utils.py
https://github.com/inveniosoftware/invenio-pidrelations/blob/a49f3725cf595b663c5b04814280b231f88bc333/invenio_pidrelations/serializers/utils.py#L47-L54
def dump_relation(api, rel_cfg, pid, data): """Dump a specific relation to a data dict.""" schema_class = rel_cfg.schema if schema_class is not None: schema = schema_class() schema.context['pid'] = pid result, errors = schema.dump(api) data.setdefault(rel_cfg.name, []).append...
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Dump a specific relation to a data dict.
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python
train
40.125
cons3rt/pycons3rt
pycons3rt/pygit.py
https://github.com/cons3rt/pycons3rt/blob/f004ab3a35c5bff2f698131fef3b2a8ed5a7596d/pycons3rt/pygit.py#L152-L191
def encode_character(char): """Returns URL encoding for a single character :param char (str) Single character to encode :returns (str) URL-encoded character """ if char == '!': return '%21' elif char == '"': return '%22' elif char == '#': return '%23' elif char == '$': return '%24' ...
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Returns URL encoding for a single character :param char (str) Single character to encode :returns (str) URL-encoded character
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python
train
32.875
Azure/msrest-for-python
msrest/serialization.py
https://github.com/Azure/msrest-for-python/blob/0732bc90bdb290e5f58c675ffdd7dbfa9acefc93/msrest/serialization.py#L1633-L1642
def deserialize_bytearray(attr): """Deserialize string into bytearray. :param str attr: response string to be deserialized. :rtype: bytearray :raises: TypeError if string format invalid. """ if isinstance(attr, ET.Element): attr = attr.text return byt...
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python
train
33.4
deepmind/sonnet
sonnet/python/modules/relational_memory.py
https://github.com/deepmind/sonnet/blob/00612ca3178964d86b556e062694d808ff81fcca/sonnet/python/modules/relational_memory.py#L184-L210
def _create_gates(self, inputs, memory): """Create input and forget gates for this step using `inputs` and `memory`. Args: inputs: Tensor input. memory: The current state of memory. Returns: input_gate: A LSTM-like insert gate. forget_gate: A LSTM-like forget gate. """ # We...
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python
train
36.185185
Microsoft/malmo
Malmo/samples/Python_examples/tutorial_6.py
https://github.com/Microsoft/malmo/blob/4139cd6f3e52f6e893a931a1d4b70d35f8e70e5a/Malmo/samples/Python_examples/tutorial_6.py#L136-L200
def run(self, agent_host): """run the agent on the world""" total_reward = 0 self.prev_s = None self.prev_a = None is_first_action = True # main loop: world_state = agent_host.getWorldState() while world_state.is_mission_running...
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run the agent on the world
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python
train
41.415385
JasonKessler/scattertext
scattertext/TermDocMatrixWithoutCategories.py
https://github.com/JasonKessler/scattertext/blob/cacf1f687d218ee8cae3fc05cc901db824bb1b81/scattertext/TermDocMatrixWithoutCategories.py#L268-L281
def remove_terms_used_in_less_than_num_docs(self, threshold): ''' Parameters ---------- threshold: int Minimum number of documents term should appear in to be kept Returns ------- TermDocMatrix, new object with terms removed. ''' term_...
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Parameters ---------- threshold: int Minimum number of documents term should appear in to be kept Returns ------- TermDocMatrix, new object with terms removed.
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python
train
34.928571
sacrud/pyramid_sacrud
pyramid_sacrud/routes.py
https://github.com/sacrud/pyramid_sacrud/blob/05c30e219a32166b4e09ec3524767fe4a4d3c788/pyramid_sacrud/routes.py#L27-L37
def resources_preparing_factory(app, wrapper): """ Factory which wrap all resources in settings. """ settings = app.app.registry.settings config = settings.get(CONFIG_RESOURCES, None) if not config: return resources = [(k, [wrapper(r, GroupResource(k, v)) for r in v]) f...
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Factory which wrap all resources in settings.
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python
train
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Robpol86/libnl
libnl/nl.py
https://github.com/Robpol86/libnl/blob/274e9fdaa39822d06ef70b799ed4a95937a4d923/libnl/nl.py#L42-L83
def nl_connect(sk, protocol): """Create file descriptor and bind socket. https://github.com/thom311/libnl/blob/libnl3_2_25/lib/nl.c#L96 Creates a new Netlink socket using `socket.socket()` and binds the socket to the protocol and local port specified in the `sk` socket object (if any). Fails if the so...
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Create file descriptor and bind socket. https://github.com/thom311/libnl/blob/libnl3_2_25/lib/nl.c#L96 Creates a new Netlink socket using `socket.socket()` and binds the socket to the protocol and local port specified in the `sk` socket object (if any). Fails if the socket is already connected. Posit...
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python
train
32.761905
trevisanj/f311
f311/hapi.py
https://github.com/trevisanj/f311/blob/9e502a3d1e1f74d4290a8a0bae9a34ef8d7b29f7/f311/hapi.py#L11816-L11823
def SLIT_GAUSSIAN(x,g): """ Instrumental (slit) function. B(x) = sqrt(ln(2)/pi)/γ*exp(-ln(2)*(x/γ)**2), where γ/2 is a gaussian half-width at half-maximum. """ g /= 2 return sqrt(log(2))/(sqrt(pi)*g)*exp(-log(2)*(x/g)**2)
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python
train
30.25
manns/pyspread
pyspread/src/gui/_main_window.py
https://github.com/manns/pyspread/blob/0e2fd44c2e0f06605efc3058c20a43a8c1f9e7e0/pyspread/src/gui/_main_window.py#L518-L527
def OnSafeModeEntry(self, event): """Safe mode entry event handler""" # Enable menu item for leaving safe mode self.main_window.main_menu.enable_file_approve(True) self.main_window.grid.Refresh() event.Skip()
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Safe mode entry event handler
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python
train
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CityOfZion/neo-python
neo/Core/BlockBase.py
https://github.com/CityOfZion/neo-python/blob/fe90f62e123d720d4281c79af0598d9df9e776fb/neo/Core/BlockBase.py#L205-L226
def ToJson(self): """ Convert object members to a dictionary that can be parsed as JSON. Returns: dict: """ json = {} json["hash"] = self.Hash.To0xString() json["size"] = self.Size() json["version"] = self.Version json["previousblockh...
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Convert object members to a dictionary that can be parsed as JSON. Returns: dict:
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python
train
36.727273
RiotGames/cloud-inquisitor
plugins/public/cinq-auditor-domain-hijacking/cinq_auditor_domain_hijacking/__init__.py
https://github.com/RiotGames/cloud-inquisitor/blob/181dc2566ca59fc855f695b7fcc2c3b934e6ee9f/plugins/public/cinq-auditor-domain-hijacking/cinq_auditor_domain_hijacking/__init__.py#L197-L216
def return_resource_name(self, record, resource_type): """ Removes the trailing AWS domain from a DNS record to return the resource name e.g bucketname.s3.amazonaws.com will return bucketname Args: record (str): DNS record resource_type: AWS Resource typ...
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Removes the trailing AWS domain from a DNS record to return the resource name e.g bucketname.s3.amazonaws.com will return bucketname Args: record (str): DNS record resource_type: AWS Resource type (i.e. S3 Bucket, Elastic Beanstalk, etc..)
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python
train
38.95
Yubico/python-yubico
yubico/yubikey_usb_hid.py
https://github.com/Yubico/python-yubico/blob/a72e8eddb90da6ee96e29f60912ca1f2872c9aea/yubico/yubikey_usb_hid.py#L260-L313
def _waitfor(self, mode, mask, may_block, timeout=2): """ Wait for the YubiKey to either turn ON or OFF certain bits in the status byte. mode is either 'and' or 'nand' timeout is a number of seconds (precision about ~0.5 seconds) """ finished = False sleep = 0.01...
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Wait for the YubiKey to either turn ON or OFF certain bits in the status byte. mode is either 'and' or 'nand' timeout is a number of seconds (precision about ~0.5 seconds)
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python
train
42.37037
IdentityPython/fedoidcmsg
src/fedoidcmsg/entity.py
https://github.com/IdentityPython/fedoidcmsg/blob/d30107be02521fa6cdfe285da3b6b0cdd153c8cc/src/fedoidcmsg/entity.py#L505-L569
def make_federation_entity(config, eid='', httpcli=None, verify_ssl=True): """ Construct a :py:class:`fedoidcmsg.entity.FederationEntity` instance based on given configuration. :param config: Federation entity configuration :param eid: Entity ID :param httpcli: A http client instance to use whe...
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Construct a :py:class:`fedoidcmsg.entity.FederationEntity` instance based on given configuration. :param config: Federation entity configuration :param eid: Entity ID :param httpcli: A http client instance to use when sending HTTP requests :param verify_ssl: Whether TLS/SSL certificates should be v...
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python
test
33.307692
tyiannak/pyAudioAnalysis
pyAudioAnalysis/audioFeatureExtraction.py
https://github.com/tyiannak/pyAudioAnalysis/blob/e3da991e7247492deba50648a4c7c0f41e684af4/pyAudioAnalysis/audioFeatureExtraction.py#L240-L255
def stChromaFeaturesInit(nfft, fs): """ This function initializes the chroma matrices used in the calculation of the chroma features """ freqs = numpy.array([((f + 1) * fs) / (2 * nfft) for f in range(nfft)]) Cp = 27.50 nChroma = numpy.round(12.0 * numpy.log2(freqs / Cp)).astype(int) ...
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This function initializes the chroma matrices used in the calculation of the chroma features
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python
train
34
10gen/mongo-orchestration
mongo_orchestration/sharded_clusters.py
https://github.com/10gen/mongo-orchestration/blob/81fd2224205922ea2178b08190b53a33aec47261/mongo_orchestration/sharded_clusters.py#L360-L400
def member_add(self, member_id=None, params=None): """add new member into existing configuration""" member_id = member_id or str(uuid4()) if self.enable_ipv6: common.enable_ipv6_repl(params) if 'members' in params: # is replica set for member in params...
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add new member into existing configuration
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python
train
51.658537
GustavePate/distarkcli
distarkcli/utils/MyConfiguration.py
https://github.com/GustavePate/distarkcli/blob/44b0e637e94ebb2687a1b7e2f6c5d0658d775238/distarkcli/utils/MyConfiguration.py#L92-L100
def getbroker(): ''' return settings dictionnary ''' if not Configuration.broker_initialized: Configuration._initconf() Configuration.broker_settings = Configuration.settings['broker'] Configuration.broker_initialized = True return Configuratio...
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return settings dictionnary
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python
train
36.555556
puiterwijk/flask-oidc
flask_oidc/__init__.py
https://github.com/puiterwijk/flask-oidc/blob/7f16e27b926fc12953d6b2ae78a9b9cc9b8d1769/flask_oidc/__init__.py#L793-L846
def _validate_token(self, token, scopes_required=None): """The actual implementation of validate_token.""" if scopes_required is None: scopes_required = [] scopes_required = set(scopes_required) token_info = None valid_token = False has_required_scopes = Fals...
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The actual implementation of validate_token.
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python
train
35.518519
biosustain/optlang
optlang/util.py
https://github.com/biosustain/optlang/blob/13673ac26f6b3ba37a2ef392489722c52e3c5ff1/optlang/util.py#L33-L83
def solve_with_glpsol(glp_prob): """Solve glpk problem with glpsol commandline solver. Mainly for testing purposes. # Examples # -------- # >>> problem = glp_create_prob() # ... glp_read_lp(problem, None, "../tests/data/model.lp") # ... solution = solve_with_glpsol(problem) # ... print 'as...
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Solve glpk problem with glpsol commandline solver. Mainly for testing purposes. # Examples # -------- # >>> problem = glp_create_prob() # ... glp_read_lp(problem, None, "../tests/data/model.lp") # ... solution = solve_with_glpsol(problem) # ... print 'asdf' # 'asdf' # >>> print solutio...
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python
train
35.862745
swharden/SWHLab
swhlab/common.py
https://github.com/swharden/SWHLab/blob/a86c3c65323cec809a4bd4f81919644927094bf5/swhlab/common.py#L260-L268
def parent(groups,ID): """given a groups dictionary and an ID, return its actual parent ID.""" if ID in groups.keys(): return ID # already a parent if not ID in groups.keys(): for actualParent in groups.keys(): if ID in groups[actualParent]: return actualParent # ...
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given a groups dictionary and an ID, return its actual parent ID.
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python
valid
39
mapbox/mapbox-cli-py
mapboxcli/scripts/geocoding.py
https://github.com/mapbox/mapbox-cli-py/blob/b75544a2f83a4fda79d78b5673058e16e64a4f6d/mapboxcli/scripts/geocoding.py#L24-L31
def coords_from_query(query): """Transform a query line into a (lng, lat) pair of coordinates.""" try: coords = json.loads(query) except ValueError: vals = re.split(r'[,\s]+', query.strip()) coords = [float(v) for v in vals] return tuple(coords[:2])
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Transform a query line into a (lng, lat) pair of coordinates.
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python
train
35.25
tensorflow/tensor2tensor
tensor2tensor/models/research/glow_ops.py
https://github.com/tensorflow/tensor2tensor/blob/272500b6efe353aeb638d2745ed56e519462ca31/tensor2tensor/models/research/glow_ops.py#L1156-L1193
def revnet_step(name, x, hparams, reverse=True): """One step of glow generative flow. Actnorm + invertible 1X1 conv + affine_coupling. Args: name: used for variable scope. x: input hparams: coupling_width is the only hparam that is being used in this function. reverse: forward or re...
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One step of glow generative flow. Actnorm + invertible 1X1 conv + affine_coupling. Args: name: used for variable scope. x: input hparams: coupling_width is the only hparam that is being used in this function. reverse: forward or reverse pass. Returns: z: Output of one step of re...
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python
train
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liftoff/pyminifier
pyminifier/minification.py
https://github.com/liftoff/pyminifier/blob/087ea7b0c8c964f1f907c3f350f5ce281798db86/pyminifier/minification.py#L163-L234
def reduce_operators(source): """ Remove spaces between operators in *source* and returns the result. Example:: def foo(foo, bar, blah): test = "This is a %s" % foo Will become:: def foo(foo,bar,blah): test="This is a %s"%foo .. note:: Also remov...
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python
train
37.291667
deepmind/sonnet
sonnet/python/modules/conv.py
https://github.com/deepmind/sonnet/blob/00612ca3178964d86b556e062694d808ff81fcca/sonnet/python/modules/conv.py#L713-L719
def output_channels(self): """Returns the number of output channels.""" if callable(self._output_channels): self._output_channels = self._output_channels() # Channel must be integer. self._output_channels = int(self._output_channels) return self._output_channels
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Returns the number of output channels.
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python
train
40.285714
tensorflow/mesh
mesh_tensorflow/simd_mesh_impl.py
https://github.com/tensorflow/mesh/blob/3921196e5e43302e820da0a87329f25d7e2a3016/mesh_tensorflow/simd_mesh_impl.py#L443-L458
def slice(self, tf_tensor, tensor_shape): """"Slice out the corresponding part of tensor given the pnum variable.""" tensor_layout = self.tensor_layout(tensor_shape) if tensor_layout.is_fully_replicated: return self.LaidOutTensor([tf_tensor]) else: slice_shape = self.slice_shape(tensor_shap...
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Slice out the corresponding part of tensor given the pnum variable.
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python
train
42.25
benhoff/pluginmanager
pluginmanager/file_manager.py
https://github.com/benhoff/pluginmanager/blob/a8a184f9ebfbb521703492cb88c1dbda4cd04c06/pluginmanager/file_manager.py#L111-L121
def remove_plugin_filepaths(self, filepaths): """ Removes `filepaths` from `self.plugin_filepaths`. Recommend passing in absolute filepaths. Method will attempt to convert to absolute paths if not passed in. `filepaths` can be a single object or an iterable. """ ...
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Removes `filepaths` from `self.plugin_filepaths`. Recommend passing in absolute filepaths. Method will attempt to convert to absolute paths if not passed in. `filepaths` can be a single object or an iterable.
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python
train
45
reanahub/reana-commons
reana_commons/publisher.py
https://github.com/reanahub/reana-commons/blob/abf31d9f495e0d93171c43fc4a414cd292091b11/reana_commons/publisher.py#L100-L118
def publish_workflow_status(self, workflow_uuid, status, logs='', message=None): """Publish workflow status using the configured. :param workflow_uudid: String which represents the workflow UUID. :param status: Integer which represents the status of the workflow,...
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Publish workflow status using the configured. :param workflow_uudid: String which represents the workflow UUID. :param status: Integer which represents the status of the workflow, this is defined in the `reana-db` `Workflow` models. :param logs: String which represents the logs whic...
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python
train
43.105263
riggsd/davies
davies/compass/__init__.py
https://github.com/riggsd/davies/blob/8566c626202a875947ad01c087300108c68d80b5/davies/compass/__init__.py#L60-L70
def azm(self): """Corrected azimuth, taking into account backsight, declination, and compass corrections.""" azm1 = self.get('BEARING', None) azm2 = self.get('AZM2', None) if azm1 is None and azm2 is None: return None if azm2 is None: return azm1 + self.de...
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Corrected azimuth, taking into account backsight, declination, and compass corrections.
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python
train
42.636364
tensorflow/lucid
lucid/scratch/atlas_pipeline/render_tile.py
https://github.com/tensorflow/lucid/blob/d1a1e2e4fd4be61b89b8cba20dc425a5ae34576e/lucid/scratch/atlas_pipeline/render_tile.py#L11-L51
def render_tile(cells, ti, tj, render, params, metadata, layout, summary): """ Render each cell in the tile and stitch it into a single image """ image_size = params["cell_size"] * params["n_tile"] tile = Image.new("RGB", (image_size, image_size), (255,255,255)) keys = cells.keys() for i,key in enumerat...
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Render each cell in the tile and stitch it into a single image
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python
train
37.146341
pypa/pipenv
pipenv/vendor/jinja2/filters.py
https://github.com/pypa/pipenv/blob/cae8d76c210b9777e90aab76e9c4b0e53bb19cde/pipenv/vendor/jinja2/filters.py#L499-L533
def do_urlize(eval_ctx, value, trim_url_limit=None, nofollow=False, target=None, rel=None): """Converts URLs in plain text into clickable links. If you pass the filter an additional integer it will shorten the urls to that number. Also a third argument exists that makes the urls "nofollow...
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Converts URLs in plain text into clickable links. If you pass the filter an additional integer it will shorten the urls to that number. Also a third argument exists that makes the urls "nofollow": .. sourcecode:: jinja {{ mytext|urlize(40, true) }} links are shortened to 40 chars ...
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python
train
31.428571
koriakin/binflakes
binflakes/types/word.py
https://github.com/koriakin/binflakes/blob/f059cecadf1c605802a713c62375b5bd5606d53f/binflakes/types/word.py#L242-L249
def sext(self, width): """Sign-extends a word to a larger width. It is an error to specify a smaller width (use ``extract`` instead to crop off the extra bits). """ width = operator.index(width) if width < self._width: raise ValueError('sign extending to a smaller wi...
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Sign-extends a word to a larger width. It is an error to specify a smaller width (use ``extract`` instead to crop off the extra bits).
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python
train
47
SuperCowPowers/bat
bat/utils/cache.py
https://github.com/SuperCowPowers/bat/blob/069e6bc52843dc07760969c531cc442ca7da8e0c/bat/utils/cache.py#L77-L86
def _compress(self): """Internal method to compress the cache. This method will expire any old items in the cache, making the cache smaller""" # Don't compress too often now = time.time() if self._last_compression + self._compression_timer < now: self._last_compre...
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Internal method to compress the cache. This method will expire any old items in the cache, making the cache smaller
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python
train
40.1
inasafe/inasafe
safe/utilities/utilities.py
https://github.com/inasafe/inasafe/blob/831d60abba919f6d481dc94a8d988cc205130724/safe/utilities/utilities.py#L332-L357
def human_sorting(the_list): """Sort the given list in the way that humans expect. From http://stackoverflow.com/a/4623518 :param the_list: The list to sort. :type the_list: list :return: The new sorted list. :rtype: list """ def try_int(s): try: return int(s) ...
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Sort the given list in the way that humans expect. From http://stackoverflow.com/a/4623518 :param the_list: The list to sort. :type the_list: list :return: The new sorted list. :rtype: list
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python
train
23.423077
ga4gh/ga4gh-server
ga4gh/server/datamodel/datasets.py
https://github.com/ga4gh/ga4gh-server/blob/1aa18922ef136db8604f6f098cb1732cba6f2a76/ga4gh/server/datamodel/datasets.py#L402-L409
def getRnaQuantificationSetByName(self, name): """ Returns the RnaQuantification set with the specified name, or raises an exception otherwise. """ if name not in self._rnaQuantificationSetNameMap: raise exceptions.RnaQuantificationSetNameNotFoundException(name) ...
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Returns the RnaQuantification set with the specified name, or raises an exception otherwise.
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python
train
45.25
modin-project/modin
modin/engines/base/frame/partition_manager.py
https://github.com/modin-project/modin/blob/5b77d242596560c646b8405340c9ce64acb183cb/modin/engines/base/frame/partition_manager.py#L685-L803
def apply_func_to_select_indices(self, axis, func, indices, keep_remaining=False): """Applies a function to select indices. Note: Your internal function must take a kwarg `internal_indices` for this to work correctly. This prevents information leakage of the internal index to th...
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python
train
44.02521
miguelgrinberg/python-socketio
socketio/namespace.py
https://github.com/miguelgrinberg/python-socketio/blob/c0c1bf8d21e3597389b18938550a0724dd9676b7/socketio/namespace.py#L8-L18
def trigger_event(self, event, *args): """Dispatch an event to the proper handler method. In the most common usage, this method is not overloaded by subclasses, as it performs the routing of events to methods. However, this method can be overriden if special dispatching rules are needed...
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python
train
47.909091
xtream1101/cutil
cutil/__init__.py
https://github.com/xtream1101/cutil/blob/2e4d1f00e66154b44d4ccffb9b1db3f37e87f2e8/cutil/__init__.py#L473-L491
def timeit(stat_tracker_func, name): """ Pass in a function and the name of the stat Will time the function that this is a decorator to and send the `name` as well as the value (in seconds) to `stat_tracker_func` `stat_tracker_func` can be used to either print out the data or save it """ de...
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python
train
31.263158
openvax/datacache
datacache/download.py
https://github.com/openvax/datacache/blob/73bcac02d37cf153710a07fbdc636aa55cb214ca/datacache/download.py#L145-L156
def file_exists( download_url, filename=None, decompress=False, subdir=None): """ Return True if a local file corresponding to these arguments exists. """ filename = build_local_filename(download_url, filename, decompress) full_path = build_path(filename, subdir) ...
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Return True if a local file corresponding to these arguments exists.
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python
train
28.75
google/openhtf
openhtf/plugs/usb/adb_device.py
https://github.com/google/openhtf/blob/655e85df7134db7bdf8f8fdd6ff9a6bf932e7b09/openhtf/plugs/usb/adb_device.py#L191-L224
def _check_remote_command(self, destination, timeout_ms, success_msgs=None): """Open a stream to destination, check for remote errors. Used for reboot, remount, and root services. If this method returns, the command was successful, otherwise an appropriate error will have been raised. Args: ...
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Open a stream to destination, check for remote errors. Used for reboot, remount, and root services. If this method returns, the command was successful, otherwise an appropriate error will have been raised. Args: destination: Stream destination to open. timeout_ms: Timeout in milliseconds ...
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python
train
41.558824
Cadasta/django-tutelary
tutelary/wildtree.py
https://github.com/Cadasta/django-tutelary/blob/66bb05de7098777c0a383410c287bf48433cde87/tutelary/wildtree.py#L159-L184
def find_in_tree(tree, key, perfect=False): """ Helper to perform find in dictionary tree. """ if len(key) == 0: if tree['item'] is not None: return tree['item'], () else: for i in range(len(tree['subtrees'])): if not perfect and tree['subtrees'][i...
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Helper to perform find in dictionary tree.
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python
train
38.807692
scott-maddox/openbandparams
src/openbandparams/iii_v_zinc_blende_strained.py
https://github.com/scott-maddox/openbandparams/blob/bc24e59187326bcb8948117434536082c9055777/src/openbandparams/iii_v_zinc_blende_strained.py#L180-L184
def Eg(self, **kwargs): ''' Returns the strain-shifted bandgap, ``Eg``. ''' return self.unstrained.Eg(**kwargs) + self.Eg_strain_shift(**kwargs)
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Returns the strain-shifted bandgap, ``Eg``.
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python
train
34.4
hustlzp/Flask-Boost
flask_boost/cli.py
https://github.com/hustlzp/Flask-Boost/blob/d0308408ebb248dd752b77123b845f8ec637fab2/flask_boost/cli.py#L303-L313
def _mkdir_p(path): """mkdir -p path""" try: os.makedirs(path) except OSError as exc: if exc.errno == errno.EEXIST and os.path.isdir(path): pass else: raise else: logger.info("New: %s%s", path, os.path.sep)
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mkdir -p path
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python
test
24.363636
GluuFederation/oxd-python
oxdpython/client.py
https://github.com/GluuFederation/oxd-python/blob/a0448cda03b4384bc50a8c20bd65eacd983bceb8/oxdpython/client.py#L513-L536
def uma_rp_get_claims_gathering_url(self, ticket): """UMA RP function to get the claims gathering URL. Parameters: * **ticket (str):** ticket to pass to the auth server. for 90% of the cases, this will be obtained from 'need_info' error of get_rpt Returns: **string** sp...
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UMA RP function to get the claims gathering URL. Parameters: * **ticket (str):** ticket to pass to the auth server. for 90% of the cases, this will be obtained from 'need_info' error of get_rpt Returns: **string** specifying the claims gathering url
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python
train
41.666667
20c/xbahn
xbahn/engineer.py
https://github.com/20c/xbahn/blob/afb27b0576841338a366d7cac0200a782bd84be6/xbahn/engineer.py#L163-L176
def connect(self, ctx): """ establish xbahn connection and store on click context """ if hasattr(ctx,"conn") or "host" not in ctx.params: return ctx.conn = conn = connect(ctx.params["host"]) lnk = link.Link() lnk.wire("main", receive=conn, send=conn...
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establish xbahn connection and store on click context
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python
train
29.142857
wiheto/teneto
teneto/timeseries/derive.py
https://github.com/wiheto/teneto/blob/80d7a83a9adc1714589b020627c45bd5b66248ab/teneto/timeseries/derive.py#L16-L237
def derive_temporalnetwork(data, params): """ Derives connectivity from the data. A lot of data is inherently built with edges (e.g. communication between two individuals). However other networks are derived from the covariance of time series (e.g. brain networks between two regions). Covaria...
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Derives connectivity from the data. A lot of data is inherently built with edges (e.g. communication between two individuals). However other networks are derived from the covariance of time series (e.g. brain networks between two regions). Covariance based metrics deriving time-resolved networks can ...
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python
train
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oasis-open/cti-stix-validator
stix2validator/v21/shoulds.py
https://github.com/oasis-open/cti-stix-validator/blob/a607014e3fa500a7678f8b61b278456ca581f9d0/stix2validator/v21/shoulds.py#L854-L870
def socket_options(instance): """Ensure the keys of the 'options' property of the socket-ext extension of network-traffic objects are only valid socket options (SO_*). """ for key, obj in instance['objects'].items(): if ('type' in obj and obj['type'] == 'network-traffic'): try: ...
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Ensure the keys of the 'options' property of the socket-ext extension of network-traffic objects are only valid socket options (SO_*).
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python
train
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marcomusy/vtkplotter
vtkplotter/actors.py
https://github.com/marcomusy/vtkplotter/blob/692c3396782722ec525bc1346a26999868c650c6/vtkplotter/actors.py#L2212-L2220
def cellCenters(self): """Get the list of cell centers of the mesh surface. .. hint:: |delaunay2d| |delaunay2d.py|_ """ vcen = vtk.vtkCellCenters() vcen.SetInputData(self.polydata(True)) vcen.Update() return vtk_to_numpy(vcen.GetOutput().GetPoints().GetData())
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Get the list of cell centers of the mesh surface. .. hint:: |delaunay2d| |delaunay2d.py|_
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python
train
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portfors-lab/sparkle
sparkle/gui/stim/abstract_stim_editor.py
https://github.com/portfors-lab/sparkle/blob/5fad1cf2bec58ec6b15d91da20f6236a74826110/sparkle/gui/stim/abstract_stim_editor.py#L51-L68
def closeEvent(self, event): """Verifies the stimulus before closing, warns user with a dialog if there are any problems""" self.ok.setText("Checking...") QtGui.QApplication.processEvents() self.model().cleanComponents() self.model().purgeAutoSelected() msg = self...
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python
train
47.611111
benvanwerkhoven/kernel_tuner
kernel_tuner/c.py
https://github.com/benvanwerkhoven/kernel_tuner/blob/cfcb5da5e510db494f8219c22566ab65d5fcbd9f/kernel_tuner/c.py#L296-L308
def memset(self, allocation, value, size): """set the memory in allocation to the value in value :param allocation: An Argument for some memory allocation unit :type allocation: Argument :param value: The value to set the memory to :type value: a single 8-bit unsigned int ...
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python
train
34.846154
sentinel-hub/eo-learn
mask/eolearn/mask/masking.py
https://github.com/sentinel-hub/eo-learn/blob/b8c390b9f553c561612fe9eb64e720611633a035/mask/eolearn/mask/masking.py#L67-L87
def execute(self, eopatch): """ Mask values of `feature` according to the `mask_values` in `mask_feature` :param eopatch: `eopatch` to be processed :return: Same `eopatch` instance with masked `feature` """ feature_type, feature_name, new_feature_name = next(self.feature(eopatch...
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python
train
39.761905
senseobservationsystems/commonsense-python-lib
senseapi.py
https://github.com/senseobservationsystems/commonsense-python-lib/blob/aac59a1751ef79eb830b3ca1fab6ef2c83931f87/senseapi.py#L1830-L1842
def DataProcessorsDelete(self, dataProcessorId): """ Delete a data processor in CommonSense. @param dataProcessorId - The id of the data processor that will be deleted. @return (bool) - Boolean indicating whether GroupsP...
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Delete a data processor in CommonSense. @param dataProcessorId - The id of the data processor that will be deleted. @return (bool) - Boolean indicating whether GroupsPost was successful.
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python
train
43.307692
nickpandolfi/Cyther
cyther/processing.py
https://github.com/nickpandolfi/Cyther/blob/9fb0bd77af594008aa6ee8af460aa8c953abf5bc/cyther/processing.py#L24-L33
def initiateCompilation(args, file): """ Starts the entire compilation procedure """ ####commands = finalizeCommands(args, file) commands = makeCommands(0, file) if not args['concise'] and args['print_args']: print_commands = bool(args['watch']) response = multiCall(*commands, print_...
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Starts the entire compilation procedure
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python
train
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pandas-dev/pandas
pandas/core/series.py
https://github.com/pandas-dev/pandas/blob/9feb3ad92cc0397a04b665803a49299ee7aa1037/pandas/core/series.py#L4095-L4168
def between(self, left, right, inclusive=True): """ Return boolean Series equivalent to left <= series <= right. This function returns a boolean vector containing `True` wherever the corresponding Series element is between the boundary values `left` and `right`. NA values are tr...
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Return boolean Series equivalent to left <= series <= right. This function returns a boolean vector containing `True` wherever the corresponding Series element is between the boundary values `left` and `right`. NA values are treated as `False`. Parameters ---------- lef...
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python
train
24.864865