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openfisca/openfisca-core
openfisca_core/populations.py
https://github.com/openfisca/openfisca-core/blob/92ce9396e29ae5d9bac5ea604cfce88517c6b35c/openfisca_core/populations.py#L310-L325
def any(self, array, role = None): """ Return ``True`` if ``array`` is ``True`` for any members of the entity. ``array`` must have the dimension of the number of persons in the simulation If ``role`` is provided, only the entity member with the given role are taken into acc...
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Return ``True`` if ``array`` is ``True`` for any members of the entity. ``array`` must have the dimension of the number of persons in the simulation If ``role`` is provided, only the entity member with the given role are taken into account. Example: >>> salaries = hou...
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python
train
37.9375
dmlc/gluon-nlp
scripts/word_embeddings/data.py
https://github.com/dmlc/gluon-nlp/blob/4b83eb6bcc8881e5f1081a3675adaa19fac5c0ba/scripts/word_embeddings/data.py#L376-L427
def skipgram_lookup(indices, subwordidxs, subwordidxsptr, offset=0): """Get a sparse COO array of words and subwords for SkipGram. Parameters ---------- indices : numpy.ndarray Array containing numbers in [0, vocabulary_size). The element at position idx is taken to be the word that occ...
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Get a sparse COO array of words and subwords for SkipGram. Parameters ---------- indices : numpy.ndarray Array containing numbers in [0, vocabulary_size). The element at position idx is taken to be the word that occurs at row idx in the SkipGram batch. offset : int Offse...
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python
train
37.384615
scivision/pymap3d
pymap3d/timeconv.py
https://github.com/scivision/pymap3d/blob/c9cf676594611cdb52ff7e0eca6388c80ed4f63f/pymap3d/timeconv.py#L10-L44
def str2dt(time: datetime) -> np.ndarray: """ Converts times in string or list of strings to datetime(s) Parameters ---------- time : str or datetime.datetime or numpy.datetime64 Results ------- t : datetime.datetime """ if isinstance(time, datetime): return time ...
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Converts times in string or list of strings to datetime(s) Parameters ---------- time : str or datetime.datetime or numpy.datetime64 Results ------- t : datetime.datetime
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python
train
25.8
Jammy2211/PyAutoLens
autolens/data/ccd.py
https://github.com/Jammy2211/PyAutoLens/blob/91e50369c7a9c048c83d217625578b72423cd5a7/autolens/data/ccd.py#L1132-L1149
def load_psf(psf_path, psf_hdu, pixel_scale, renormalize=False): """Factory for loading the psf from a .fits file. Parameters ---------- psf_path : str The path to the psf .fits file containing the psf (e.g. '/path/to/psf.fits') psf_hdu : int The hdu the psf is contained in the .fit...
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Factory for loading the psf from a .fits file. Parameters ---------- psf_path : str The path to the psf .fits file containing the psf (e.g. '/path/to/psf.fits') psf_hdu : int The hdu the psf is contained in the .fits file specified by *psf_path*. pixel_scale : float The size...
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python
valid
41.833333
Capitains/MyCapytain
MyCapytain/resolvers/cts/local.py
https://github.com/Capitains/MyCapytain/blob/b11bbf6b6ae141fc02be70471e3fbf6907be6593/MyCapytain/resolvers/cts/local.py#L125-L137
def _parse_textgroup_wrapper(self, cts_file): """ Wraps with a Try/Except the textgroup parsing from a cts file :param cts_file: Path to the CTS File :type cts_file: str :return: CtsTextgroupMetadata """ try: return self._parse_textgroup(cts_file) exc...
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Wraps with a Try/Except the textgroup parsing from a cts file :param cts_file: Path to the CTS File :type cts_file: str :return: CtsTextgroupMetadata
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python
train
35.692308
SBRG/ssbio
ssbio/utils.py
https://github.com/SBRG/ssbio/blob/e9449e64ffc1a1f5ad07e5849aa12a650095f8a2/ssbio/utils.py#L327-L362
def force_rerun(flag, outfile): """Check if we should force rerunning of a command if an output file exists. Args: flag (bool): Flag to force rerun. outfile (str): Path to output file which may already exist. Returns: bool: If we should force rerunning of a command Examples: ...
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Check if we should force rerunning of a command if an output file exists. Args: flag (bool): Flag to force rerun. outfile (str): Path to output file which may already exist. Returns: bool: If we should force rerunning of a command Examples: >>> force_rerun(flag=True, outfi...
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python
train
27.333333
cltk/cltk
cltk/corpus/greek/alphabet.py
https://github.com/cltk/cltk/blob/ed9c025b7ec43c949481173251b70e05e4dffd27/cltk/corpus/greek/alphabet.py#L522-L533
def expand_iota_subscript(input_str, lowercase=False): """Find characters with iota subscript and replace w/ char + iota added.""" new_list = [] for char in input_str: new_char = MAP_SUBSCRIPT_NO_SUB.get(char) if not new_char: new_char = char new_list.append(new_char) ...
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Find characters with iota subscript and replace w/ char + iota added.
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python
train
34
danilobellini/audiolazy
audiolazy/lazy_lpc.py
https://github.com/danilobellini/audiolazy/blob/dba0a278937909980ed40b976d866b8e97c35dee/audiolazy/lazy_lpc.py#L276-L294
def lpc(blk, order=None): """ Find the Linear Predictive Coding (LPC) coefficients as a ZFilter object, the analysis whitening filter. This implementation uses the covariance method, assuming a zero-mean stochastic process, using numpy.linalg.pinv as a linear system solver. """ from numpy import matrix ...
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Find the Linear Predictive Coding (LPC) coefficients as a ZFilter object, the analysis whitening filter. This implementation uses the covariance method, assuming a zero-mean stochastic process, using numpy.linalg.pinv as a linear system solver.
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python
train
33.105263
helixyte/everest
everest/repositories/uow.py
https://github.com/helixyte/everest/blob/70c9b93c3061db5cb62428349d18b8fb8566411b/everest/repositories/uow.py#L42-L50
def register_clean(self, entity_class, entity): """ Registers the given entity for the given class as CLEAN. :returns: Cloned entity. """ EntityState.manage(entity, self) EntityState.get_state(entity).status = ENTITY_STATUS.CLEAN self.__entity_set_map[entity_clas...
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Registers the given entity for the given class as CLEAN. :returns: Cloned entity.
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python
train
36.222222
python-cmd2/cmd2
cmd2/history.py
https://github.com/python-cmd2/cmd2/blob/b22c0bd891ed08c8b09df56df9d91f48166a5e2a/cmd2/history.py#L92-L104
def get(self, index: Union[int, str]) -> HistoryItem: """Get item from the History list using 1-based indexing. :param index: optional item to get (index as either integer or string) :return: a single HistoryItem """ index = int(index) if index == 0: raise In...
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Get item from the History list using 1-based indexing. :param index: optional item to get (index as either integer or string) :return: a single HistoryItem
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python
train
35.846154
sibirrer/lenstronomy
lenstronomy/LensModel/numerical_profile_integrals.py
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LensModel/numerical_profile_integrals.py#L39-L54
def density_2d(self, r, kwargs_profile): """ computes the projected density along the line-of-sight :param r: radius (arcsec) :param kwargs_profile: keyword argument list with lens model parameters :return: 2d projected density at projected radius r """ kwargs = c...
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computes the projected density along the line-of-sight :param r: radius (arcsec) :param kwargs_profile: keyword argument list with lens model parameters :return: 2d projected density at projected radius r
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python
train
40.5625
SpriteLink/NIPAP
nipap/nipap/backend.py
https://github.com/SpriteLink/NIPAP/blob/f96069f11ab952d80b13cab06e0528f2d24b3de9/nipap/nipap/backend.py#L1146-L1183
def _expand_vrf_spec(self, spec): """ Expand VRF specification to SQL. id [integer] internal database id of VRF name [string] name of VRF A VRF is referenced either by its internal database id or by its name. Both are used for ex...
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python
train
39.5
ladybug-tools/uwg
uwg/element.py
https://github.com/ladybug-tools/uwg/blob/fb71f656b3cb69e7ccf1d851dff862e14fa210fc/uwg/element.py#L233-L254
def qsat(self,temp,pres,parameter): """ Calculate (qsat_lst) vector of saturation humidity from: temp = vector of element layer temperatures pres = pressure (at current timestep). """ gamw = (parameter.cl - parameter.cpv) / parameter.rv betaw = (parameter....
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Calculate (qsat_lst) vector of saturation humidity from: temp = vector of element layer temperatures pres = pressure (at current timestep).
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python
train
43.863636
sorgerlab/indra
indra/assemblers/english/assembler.py
https://github.com/sorgerlab/indra/blob/79a70415832c5702d7a820c7c9ccc8e25010124b/indra/assemblers/english/assembler.py#L317-L322
def _assemble_gap(stmt): """Assemble Gap statements into text.""" subj_str = _assemble_agent_str(stmt.gap) obj_str = _assemble_agent_str(stmt.ras) stmt_str = subj_str + ' is a GAP for ' + obj_str return _make_sentence(stmt_str)
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Assemble Gap statements into text.
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python
train
40.333333
raiden-network/raiden
raiden/network/rpc/client.py
https://github.com/raiden-network/raiden/blob/407ba15c72074e9de88771d6b9661ff4dc36bef5/raiden/network/rpc/client.py#L188-L207
def check_address_has_code( client: 'JSONRPCClient', address: Address, contract_name: str = '', ): """ Checks that the given address contains code. """ result = client.web3.eth.getCode(to_checksum_address(address), 'latest') if not result: if contract_name: forma...
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Checks that the given address contains code.
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python
train
30.4
pyviz/holoviews
holoviews/plotting/mpl/util.py
https://github.com/pyviz/holoviews/blob/ae0dd2f3de448b0ca5e9065aabd6ef8d84c7e655/holoviews/plotting/mpl/util.py#L189-L195
def axis_overlap(ax1, ax2): """ Tests whether two axes overlap vertically """ b1, t1 = ax1.get_position().intervaly b2, t2 = ax2.get_position().intervaly return t1 > b2 and b1 < t2
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Tests whether two axes overlap vertically
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python
train
28.285714
ga4gh/ga4gh-server
ga4gh/server/backend.py
https://github.com/ga4gh/ga4gh-server/blob/1aa18922ef136db8604f6f098cb1732cba6f2a76/ga4gh/server/backend.py#L973-L980
def runSearchCallSets(self, request): """ Runs the specified SearchCallSetsRequest. """ return self.runSearchRequest( request, protocol.SearchCallSetsRequest, protocol.SearchCallSetsResponse, self.callSetsGenerator)
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Runs the specified SearchCallSetsRequest.
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python
train
34.5
Clinical-Genomics/trailblazer
trailblazer/cli/delete.py
https://github.com/Clinical-Genomics/trailblazer/blob/27f3cd21043a1077bd7029e85783459a50a7b798/trailblazer/cli/delete.py#L12-L46
def delete(context, force, yes, analysis_id): """Delete an analysis log from the database.""" analysis_obj = context.obj['store'].analysis(analysis_id) if analysis_obj is None: print(click.style('analysis log not found', fg='red')) context.abort() print(click.style(f"{analysis_obj.famil...
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Delete an analysis log from the database.
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python
train
47.2
RudolfCardinal/pythonlib
cardinal_pythonlib/extract_text.py
https://github.com/RudolfCardinal/pythonlib/blob/0b84cb35f38bd7d8723958dae51b480a829b7227/cardinal_pythonlib/extract_text.py#L868-L951
def convert_docx_to_text( filename: str = None, blob: bytes = None, config: TextProcessingConfig = _DEFAULT_CONFIG) -> str: """ Converts a DOCX file to text. Pass either a filename or a binary object. Args: filename: filename to process blob: binary ``bytes`` object to p...
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Converts a DOCX file to text. Pass either a filename or a binary object. Args: filename: filename to process blob: binary ``bytes`` object to process config: :class:`TextProcessingConfig` control object Returns: text contents Notes: - Old ``docx`` (https://pypi.py...
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python
train
33.142857
spyder-ide/spyder
spyder/plugins/editor/utils/autosave.py
https://github.com/spyder-ide/spyder/blob/f76836ce1b924bcc4efd3f74f2960d26a4e528e0/spyder/plugins/editor/utils/autosave.py#L135-L152
def create_unique_autosave_filename(self, filename, autosave_dir): """ Create unique autosave file name for specified file name. Args: filename (str): original file name autosave_dir (str): directory in which autosave files are stored """ basename = osp.b...
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Create unique autosave file name for specified file name. Args: filename (str): original file name autosave_dir (str): directory in which autosave files are stored
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python
train
44
upsight/doctor
doctor/types.py
https://github.com/upsight/doctor/blob/2cf1d433f6f1aa1355644b449a757c0660793cdd/doctor/types.py#L914-L922
def array(description, **kwargs) -> typing.Type: """Create a :class:`~doctor.types.Array` type. :param description: A description of the type. :param kwargs: Can include any attribute defined in :class:`~doctor.types.Array` """ kwargs['description'] = description return type('Array', (A...
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Create a :class:`~doctor.types.Array` type. :param description: A description of the type. :param kwargs: Can include any attribute defined in :class:`~doctor.types.Array`
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python
train
36.333333
Chilipp/funcargparse
funcargparse/__init__.py
https://github.com/Chilipp/funcargparse/blob/398ce8e7fa5aa35c465215446bda151cf1ecf7ad/funcargparse/__init__.py#L721-L755
def update_short(self, **kwargs): """ Update the short optional arguments (those with one leading '-') This method updates the short argument name for the specified function arguments as stored in :attr:`unfinished_arguments` Parameters ---------- ``**kwargs`` ...
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Update the short optional arguments (those with one leading '-') This method updates the short argument name for the specified function arguments as stored in :attr:`unfinished_arguments` Parameters ---------- ``**kwargs`` Keywords must be keys in the :attr:`unfinis...
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python
train
31.2
pip-services3-python/pip-services3-commons-python
pip_services3_commons/refer/DependencyResolver.py
https://github.com/pip-services3-python/pip-services3-commons-python/blob/22cbbb3e91e49717f65c083d36147fdb07ba9e3b/pip_services3_commons/refer/DependencyResolver.py#L167-L176
def get_one_optional(self, name): """ Gets one optional dependency by its name. :param name: the dependency name to locate. :return: a dependency reference or null of the dependency was not found """ locator = self._locate(name) return self._references.get_one_o...
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Gets one optional dependency by its name. :param name: the dependency name to locate. :return: a dependency reference or null of the dependency was not found
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python
train
35.6
coopernurse/barrister
barrister/docco.py
https://github.com/coopernurse/barrister/blob/0471b1d98d3327ba381684db496ec94c79c20848/barrister/docco.py#L312-L352
def parse_struct(s): """ Returns a docco section for the given struct. :Parameters: s Parsed IDL struct dict. Keys: 'comment', 'name', 'extends', 'fields' """ docs = s['comment'] code = '<span class="k">struct</span> <span class="gs">%s</span>' % s['name'] if s['extends']: ...
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Returns a docco section for the given struct. :Parameters: s Parsed IDL struct dict. Keys: 'comment', 'name', 'extends', 'fields'
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python
train
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inasafe/inasafe
safe/gui/tools/options_dialog.py
https://github.com/inasafe/inasafe/blob/831d60abba919f6d481dc94a8d988cc205130724/safe/gui/tools/options_dialog.py#L498-L507
def open_user_directory_path(self): """Open File dialog to choose the user directory path.""" # noinspection PyCallByClass,PyTypeChecker directory_name = QFileDialog.getExistingDirectory( self, self.tr('Results directory'), self.leUserDirectoryPath.text(), ...
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Open File dialog to choose the user directory path.
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python
train
43.3
Genida/archan
src/archan/plugins/checkers.py
https://github.com/Genida/archan/blob/a026d3105c7e86f30e6c9507b93ceb736684bfdc/src/archan/plugins/checkers.py#L414-L444
def check(self, dsm, **kwargs): """ Check layered architecture. Args: dsm (:class:`DesignStructureMatrix`): the DSM to check. Returns: bool, str: True if layered architecture else False, messages """ layered_architecture = True messages =...
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Check layered architecture. Args: dsm (:class:`DesignStructureMatrix`): the DSM to check. Returns: bool, str: True if layered architecture else False, messages
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python
train
35.83871
apache/incubator-mxnet
python/mxnet/ndarray/ndarray.py
https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/python/mxnet/ndarray/ndarray.py#L3884-L3908
def empty(shape, ctx=None, dtype=None): """Returns a new array of given shape and type, without initializing entries. Parameters ---------- shape : int or tuple of int The shape of the empty array. ctx : Context, optional An optional device context (default is the current default co...
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python
train
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refenv/cijoe
deprecated/modules/cij/spdk.py
https://github.com/refenv/cijoe/blob/21d7b2ed4ff68e0a1457e7df2db27f6334f1a379/deprecated/modules/cij/spdk.py#L117-L121
def vblk_erase(self, address): """nvm_vblk erase""" cmd = ["nvm_vblk erase", self.envs, "0x%x" % address] status, _, _ = cij.ssh.command(cmd, shell=True) return status
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nvm_vblk erase
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python
valid
39.8
marcinmiklitz/pywindow
pywindow/utilities.py
https://github.com/marcinmiklitz/pywindow/blob/e5264812157224f22a691741ca2e0aefdc9bd2eb/pywindow/utilities.py#L397-L419
def shift_com(elements, coordinates, com_adjust=np.zeros(3)): """ Return coordinates translated by some vector. Parameters ---------- elements : numpy.ndarray An array of all elements (type: str) in a molecule. coordinates : numpy.ndarray An array containing molecule's coordina...
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Return coordinates translated by some vector. Parameters ---------- elements : numpy.ndarray An array of all elements (type: str) in a molecule. coordinates : numpy.ndarray An array containing molecule's coordinates. com_adjust : numpy.ndarray (default = [0, 0, 0]) Returns ...
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python
train
26.043478
cloud9ers/gurumate
environment/lib/python2.7/site-packages/IPython/parallel/controller/scheduler.py
https://github.com/cloud9ers/gurumate/blob/075dc74d1ee62a8c6b7a8bf2b271364f01629d1e/environment/lib/python2.7/site-packages/IPython/parallel/controller/scheduler.py#L701-L707
def add_job(self, idx): """Called after self.targets[idx] just got the job with header. Override with subclasses. The default ordering is simple LRU. The default loads are the number of outstanding jobs.""" self.loads[idx] += 1 for lis in (self.targets, self.loads): ...
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Called after self.targets[idx] just got the job with header. Override with subclasses. The default ordering is simple LRU. The default loads are the number of outstanding jobs.
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python
test
48.285714
IdentityPython/pysaml2
src/saml2/client.py
https://github.com/IdentityPython/pysaml2/blob/d3aa78eeb7d37c12688f783cb4db1c7263a14ad6/src/saml2/client.py#L42-L80
def prepare_for_authenticate( self, entityid=None, relay_state="", binding=saml2.BINDING_HTTP_REDIRECT, vorg="", nameid_format=None, scoping=None, consent=None, extensions=None, sign=None, response_binding=saml2.BINDING_HTTP_POST, **kwargs): """ Makes all necessar...
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python
train
43.051282
sosy-lab/benchexec
benchexec/tablegenerator/util.py
https://github.com/sosy-lab/benchexec/blob/44428f67f41384c03aea13e7e25f884764653617/benchexec/tablegenerator/util.py#L81-L97
def open_url_seekable(path_url, mode='rt'): """Open a URL and ensure that the result is seekable, copying it into a buffer if necessary.""" logging.debug("Making request to '%s'", path_url) response = urllib.request.urlopen(path_url) logging.debug("Got response %s", response.info()) try: ...
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python
train
32.294118
wummel/linkchecker
linkcheck/cache/urlqueue.py
https://github.com/wummel/linkchecker/blob/c2ce810c3fb00b895a841a7be6b2e78c64e7b042/linkcheck/cache/urlqueue.py#L180-L201
def join (self, timeout=None): """Blocks until all items in the Queue have been gotten and processed. The count of unfinished tasks goes up whenever an item is added to the queue. The count goes down whenever a consumer thread calls task_done() to indicate the item was retrieved and all...
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python
train
44.136364
ray-project/ray
python/ray/node.py
https://github.com/ray-project/ray/blob/4eade036a0505e244c976f36aaa2d64386b5129b/python/ray/node.py#L692-L703
def live_processes(self): """Return a list of the live processes. Returns: A list of the live processes. """ result = [] for process_type, process_infos in self.all_processes.items(): for process_info in process_infos: if process_info.proc...
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Return a list of the live processes. Returns: A list of the live processes.
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python
train
35.166667
openstack/horizon
openstack_dashboard/api/_nova.py
https://github.com/openstack/horizon/blob/5601ea9477323e599d9b766fcac1f8be742935b2/openstack_dashboard/api/_nova.py#L99-L111
def get_auth_params_from_request(request): """Extracts properties needed by novaclient call from the request object. These will be used to memoize the calls to novaclient. """ return ( request.user.username, request.user.token.id, request.user.tenant_id, request.user.tok...
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Extracts properties needed by novaclient call from the request object. These will be used to memoize the calls to novaclient.
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python
train
32.769231
pypa/setuptools
setuptools/msvc.py
https://github.com/pypa/setuptools/blob/83c667e0b2a98193851c07115d1af65011ed0fb6/setuptools/msvc.py#L559-L573
def _guess_vc(self): """ Locate Visual C for 2017 """ if self.vc_ver <= 14.0: return default = r'VC\Tools\MSVC' guess_vc = os.path.join(self.VSInstallDir, default) # Subdir with VC exact version as name try: vc_exact_ver = os.listd...
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Locate Visual C for 2017
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python
train
29.466667
brocade/pynos
pynos/versions/base/yang/ietf_netconf.py
https://github.com/brocade/pynos/blob/bd8a34e98f322de3fc06750827d8bbc3a0c00380/pynos/versions/base/yang/ietf_netconf.py#L484-L494
def commit_input_confirmed(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") commit = ET.Element("commit") config = commit input = ET.SubElement(commit, "input") confirmed = ET.SubElement(input, "confirmed") callback = kwargs.pop('...
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Auto Generated Code
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python
train
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sorend/sshconf
sshconf.py
https://github.com/sorend/sshconf/blob/59f3fc165b1ba9e76ba23444b1205d88462938f3/sshconf.py#L112-L118
def read_ssh_config(path): """ Read ssh config file and return parsed SshConfig """ with open(path, "r") as fh_: lines = fh_.read().splitlines() return SshConfig(lines)
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Read ssh config file and return parsed SshConfig
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python
train
27.142857
senaite/senaite.jsonapi
src/senaite/jsonapi/api.py
https://github.com/senaite/senaite.jsonapi/blob/871959f4b1c9edbb477e9456325527ca78e13ec6/src/senaite/jsonapi/api.py#L279-L338
def get_info(brain_or_object, endpoint=None, complete=False): """Extract the data from the catalog brain or object :param brain_or_object: A single catalog brain or content object :type brain_or_object: ATContentType/DexterityContentType/CatalogBrain :param endpoint: The named URL endpoint for the root...
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Extract the data from the catalog brain or object :param brain_or_object: A single catalog brain or content object :type brain_or_object: ATContentType/DexterityContentType/CatalogBrain :param endpoint: The named URL endpoint for the root of the items :type endpoint: str/unicode :param complete: Fl...
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python
train
37.566667
fermiPy/fermipy
fermipy/diffuse/source_factory.py
https://github.com/fermiPy/fermipy/blob/9df5e7e3728307fd58c5bba36fd86783c39fbad4/fermipy/diffuse/source_factory.py#L21-L31
def make_spatialmap_source(name, Spatial_Filename, spectrum): """Construct and return a `fermipy.roi_model.Source` object """ data = dict(Spatial_Filename=Spatial_Filename, ra=0.0, dec=0.0, SpatialType='SpatialMap', Source_Name=name) if spectrum is not No...
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Construct and return a `fermipy.roi_model.Source` object
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python
train
34.909091
UDST/orca
orca/orca.py
https://github.com/UDST/orca/blob/07b34aeef13cc87c966b2e30cbe7e76cc9d3622c/orca/orca.py#L1356-L1381
def injectable( name=None, autocall=True, cache=False, cache_scope=_CS_FOREVER, memoize=False): """ Decorates functions that will be injected into other functions. Decorator version of `add_injectable`. Name defaults to name of function. The function's argument names and keyword ar...
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python
train
30.423077
ossobv/dutree
dutree/dutree.py
https://github.com/ossobv/dutree/blob/adceeeb17f9fd70a7ed9c674850d7015d820eb2a/dutree/dutree.py#L217-L258
def merge_upwards_if_smaller_than(self, small_size, a_or_u): """After prune_if_smaller_than is run, we may still have excess nodes. For example, with a small_size of 609710690: 7 /* 28815419 /data/* 32 /data/srv/* 925746...
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python
train
37.47619
lappis-unb/salic-ml
src/salicml/metrics/finance/new_providers.py
https://github.com/lappis-unb/salic-ml/blob/1b3ebc4f8067740999897ccffd9892dc94482a93/src/salicml/metrics/finance/new_providers.py#L101-L114
def providers_count(df): """ Returns total occurrences of each provider in the database. """ providers_count = {} cnpj_array = df.values for a in cnpj_array: cnpj = a[0] occurrences = providers_count.get(cnpj, 0) providers_count[cnpj] = occurrences + 1 return pd...
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Returns total occurrences of each provider in the database.
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python
train
25.714286
Chilipp/psyplot
psyplot/project.py
https://github.com/Chilipp/psyplot/blob/75a0a15a9a1dd018e79d2df270d56c4bf5f311d5/psyplot/project.py#L1415-L1428
def load_figure(d, new_fig=True): """Create a figure from what is returned by :meth:`inspect_figure`""" import matplotlib.pyplot as plt subplotpars = d.pop('subplotpars', None) if subplotpars is not None: subplotpars.pop('validate', None) subplotpars = mfig.Subplo...
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Create a figure from what is returned by :meth:`inspect_figure`
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python
train
44.428571
rsmuc/health_monitoring_plugins
health_monitoring_plugins/check_snmp_eaton_ups/check_snmp_eaton_ups.py
https://github.com/rsmuc/health_monitoring_plugins/blob/7ac29dfb9fe46c055b018cb72ad0d7d8065589b9/health_monitoring_plugins/check_snmp_eaton_ups/check_snmp_eaton_ups.py#L61-L75
def check_ups_estimated_minutes_remaining(the_session, the_helper, the_snmp_value): """ OID .1.3.6.1.2.1.33.1.2.3.0 MIB excerpt An estimate of the time to battery charge depletion under the present load conditions if the utility power is off and remains off, or if it were to be lost and rema...
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OID .1.3.6.1.2.1.33.1.2.3.0 MIB excerpt An estimate of the time to battery charge depletion under the present load conditions if the utility power is off and remains off, or if it were to be lost and remain off.
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python
train
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clarete/curdling
curdling/index.py
https://github.com/clarete/curdling/blob/27c160ea0adad2771bee12c48a57208a1a3c4d9a/curdling/index.py#L114-L124
def package_releases(self, package, url_fmt=lambda u: u): """List all versions of a package Along with the version, the caller also receives the file list with all the available formats. """ return [{ 'name': package, 'version': version, 'urls...
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List all versions of a package Along with the version, the caller also receives the file list with all the available formats.
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python
train
39
chrismattmann/tika-python
tika/detector.py
https://github.com/chrismattmann/tika-python/blob/ffd3879ac3eaa9142c0fb6557cc1dc52d458a75a/tika/detector.py#L30-L38
def from_buffer(string, config_path=None): ''' Detects MIME type of the buffered content :param string: buffered content whose type needs to be detected :return: ''' status, response = callServer('put', ServerEndpoint, '/detect/stream', string, {'Accept': 'text/...
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Detects MIME type of the buffered content :param string: buffered content whose type needs to be detected :return:
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python
train
41.333333
gamechanger/dusty
dusty/systems/virtualbox/__init__.py
https://github.com/gamechanger/dusty/blob/dc12de90bb6945023d6f43a8071e984313a1d984/dusty/systems/virtualbox/__init__.py#L64-L71
def _dusty_vm_exists(): """We use VBox directly instead of Docker Machine because it shaves about 0.5 seconds off the runtime of this check.""" existing_vms = check_output_demoted(['VBoxManage', 'list', 'vms']) for line in existing_vms.splitlines(): if '"{}"'.format(constants.VM_MACHINE_NAME) in...
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We use VBox directly instead of Docker Machine because it shaves about 0.5 seconds off the runtime of this check.
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python
valid
45
MillionIntegrals/vel
vel/models/vision/cifar_resnet_v2.py
https://github.com/MillionIntegrals/vel/blob/e0726e1f63742b728966ccae0c8b825ea0ba491a/vel/models/vision/cifar_resnet_v2.py#L77-L81
def metrics(self): """ Set of metrics for this model """ from vel.metrics.loss_metric import Loss from vel.metrics.accuracy import Accuracy return [Loss(), Accuracy()]
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Set of metrics for this model
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python
train
39
yymao/generic-catalog-reader
GCR/base.py
https://github.com/yymao/generic-catalog-reader/blob/bc6267ac41b9f68106ed6065184469ac13fdc0b6/GCR/base.py#L306-L311
def add_modifier_on_derived_quantities(self, new_quantity, func, *quantities): """ Deprecated. Use `add_derived_quantity` instead. """ warnings.warn("Use `add_derived_quantity` instead.", DeprecationWarning) self.add_derived_quantity(new_quantity, func, *quantities)
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Deprecated. Use `add_derived_quantity` instead.
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python
train
50.166667
rsheftel/raccoon
raccoon/dataframe.py
https://github.com/rsheftel/raccoon/blob/e5c4b5fb933b51f33aff11e8168c39790e9a7c75/raccoon/dataframe.py#L876-L886
def rename_columns(self, rename_dict): """ Renames the columns :param rename_dict: dict where the keys are the current column names and the values are the new names :return: nothing """ if not all([x in self._columns for x in rename_dict.keys()]): raise Value...
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Renames the columns :param rename_dict: dict where the keys are the current column names and the values are the new names :return: nothing
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python
train
44.272727
ncclient/ncclient
ncclient/operations/retrieve.py
https://github.com/ncclient/ncclient/blob/2b75f2c6a06bd2a5d1be67b01bb65c5ffd2e2d7a/ncclient/operations/retrieve.py#L72-L91
def request(self, filter=None, with_defaults=None): """Retrieve running configuration and device state information. *filter* specifies the portion of the configuration to retrieve (by default entire configuration is retrieved) *with_defaults* defines an explicit method of retrieving default va...
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python
train
39.05
smnorris/bcdata
bcdata/wfs.py
https://github.com/smnorris/bcdata/blob/de6b5bbc28d85e36613b51461911ee0a72a146c5/bcdata/wfs.py#L170-L189
def get_data( dataset, query=None, crs="epsg:4326", bounds=None, sortby=None, pagesize=10000, max_workers=5, ): """Get GeoJSON featurecollection from DataBC WFS """ param_dicts = define_request(dataset, query, crs, bounds, sortby, pagesize) with ThreadPoolExecutor(max_worker...
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Get GeoJSON featurecollection from DataBC WFS
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python
train
26.45
AnthonyBloomer/daftlistings
daftlistings/listing.py
https://github.com/AnthonyBloomer/daftlistings/blob/f6c1b52425bc740f443b5efe6632a4bf18ee997f/daftlistings/listing.py#L266-L286
def images(self): """ This method returns the listing image. :return: """ try: uls = self._ad_page_content.find( "ul", {"class": "smi-gallery-list"}) except Exception as e: if self._debug: logging.error( ...
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This method returns the listing image. :return:
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python
train
28.285714
Becksteinlab/GromacsWrapper
gromacs/qsub.py
https://github.com/Becksteinlab/GromacsWrapper/blob/d4f9a8cb6f48292732cf7c7e4ef4a6d2ccbc51b9/gromacs/qsub.py#L251-L279
def array(self, directories): """Return multiline string for simple array jobs over *directories*. .. Warning:: The string is in ``bash`` and hence the template must also be ``bash`` (and *not* ``csh`` or ``sh``). """ if not self.has_arrays(): raise NotI...
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Return multiline string for simple array jobs over *directories*. .. Warning:: The string is in ``bash`` and hence the template must also be ``bash`` (and *not* ``csh`` or ``sh``).
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python
valid
41.482759
spyder-ide/spyder
spyder/widgets/comboboxes.py
https://github.com/spyder-ide/spyder/blob/f76836ce1b924bcc4efd3f74f2960d26a4e528e0/spyder/widgets/comboboxes.py#L357-L360
def selected(self): """Action to be executed when a valid item has been selected""" EditableComboBox.selected(self) self.open_dir.emit(self.currentText())
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Action to be executed when a valid item has been selected
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python
train
44.5
gwpy/gwpy
gwpy/io/gwf.py
https://github.com/gwpy/gwpy/blob/7a92b917e7dd2d99b15895293a1fa1d66cdb210a/gwpy/io/gwf.py#L72-L96
def open_gwf(filename, mode='r'): """Open a filename for reading or writing GWF format data Parameters ---------- filename : `str` the path to read from, or write to mode : `str`, optional either ``'r'`` (read) or ``'w'`` (write) Returns ------- `LDAStools.frameCPP.IFr...
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Open a filename for reading or writing GWF format data Parameters ---------- filename : `str` the path to read from, or write to mode : `str`, optional either ``'r'`` (read) or ``'w'`` (write) Returns ------- `LDAStools.frameCPP.IFrameFStream` the input frame strea...
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python
train
31.04
numenta/htmresearch
projects/combined_sequences/combined_sequences.py
https://github.com/numenta/htmresearch/blob/70c096b09a577ea0432c3f3bfff4442d4871b7aa/projects/combined_sequences/combined_sequences.py#L581-L659
def runExperimentPool(numSequences, numFeatures, numLocations, numObjects, numWorkers=7, nTrials=1, seqLength=10, figure="", numRepetitions=1, ...
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Run a bunch of experiments using a pool of numWorkers multiple processes. For numSequences, numFeatures, and numLocations pass in a list containing valid values for that parameter. The cross product of everything is run, and each combination is run nTrials times. Returns a list of dict containing detailed resu...
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python
train
36.607595
quantmind/ccy
ccy/core/country.py
https://github.com/quantmind/ccy/blob/068cf6887489087cd26657a937a932e82106b47f/ccy/core/country.py#L76-L104
def set_country_map(cfrom, cto, name=None, replace=True): ''' Set a mapping between a country code to another code ''' global _country_maps cdb = countries() cfrom = str(cfrom).upper() c = cdb.get(cfrom) if c: if name: c = name cto = str(cto).upper() i...
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Set a mapping between a country code to another code
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python
train
27.758621
pyblish/pyblish-qml
pyblish_qml/vendor/Qt.py
https://github.com/pyblish/pyblish-qml/blob/6095d18b2ec0afd0409a9b1a17e53b0658887283/pyblish_qml/vendor/Qt.py#L901-L928
def _reassign_misplaced_members(binding): """Apply misplaced members from `binding` to Qt.py Arguments: binding (dict): Misplaced members """ for src, dst in _misplaced_members[binding].items(): src_module, src_member = src.split(".") dst_module, dst_member = dst.split(".") ...
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Apply misplaced members from `binding` to Qt.py Arguments: binding (dict): Misplaced members
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python
train
29.107143
refindlyllc/rets
rets/parsers/get_object.py
https://github.com/refindlyllc/rets/blob/c615dfc272cff0825fd3b50863c46afc3e33916f/rets/parsers/get_object.py#L39-L73
def _get_multiparts(response): """ From this 'multipart/parallel; boundary="874e43d27ec6d83f30f37841bdaf90c7"; charset=utf-8' get this --874e43d27ec6d83f30f37841bdaf90c7 """ boundary = None for part in response.headers.get('Content-Type', '').split(';'): ...
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From this 'multipart/parallel; boundary="874e43d27ec6d83f30f37841bdaf90c7"; charset=utf-8' get this --874e43d27ec6d83f30f37841bdaf90c7
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python
train
33.714286
PyGithub/PyGithub
github/AuthenticatedUser.py
https://github.com/PyGithub/PyGithub/blob/f716df86bbe7dc276c6596699fa9712b61ef974c/github/AuthenticatedUser.py#L692-L702
def get_followers(self): """ :calls: `GET /user/followers <http://developer.github.com/v3/users/followers>`_ :rtype: :class:`github.PaginatedList.PaginatedList` of :class:`github.NamedUser.NamedUser` """ return github.PaginatedList.PaginatedList( github.NamedUser.Name...
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python
train
36.636364
tariqdaouda/rabaDB
rabaDB/filters.py
https://github.com/tariqdaouda/rabaDB/blob/42e0d6ee65149ae4f1e4c380cc695a9e7d2d1bbc/rabaDB/filters.py#L155-L192
def getSQLQuery(self, count = False) : "Returns the query without performing it. If count, the query returned will be a SELECT COUNT() instead of a SELECT" sqlFilters = [] sqlValues = [] # print self.filters for f in self.filters : filt = [] for k, vv in f.iteritems() : if type(vv) is types.ListType...
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Returns the query without performing it. If count, the query returned will be a SELECT COUNT() instead of a SELECT
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python
train
33.342105
mrcagney/gtfstk
gtfstk/miscellany.py
https://github.com/mrcagney/gtfstk/blob/c91494e6fefc02523889655a0dc92d1c0eee8d03/gtfstk/miscellany.py#L611-L617
def compute_convex_hull(feed: "Feed") -> Polygon: """ Return a Shapely Polygon representing the convex hull formed by the stops of the given Feed. """ m = sg.MultiPoint(feed.stops[["stop_lon", "stop_lat"]].values) return m.convex_hull
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Return a Shapely Polygon representing the convex hull formed by the stops of the given Feed.
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python
train
36
cloudant/python-cloudant
src/cloudant/document.py
https://github.com/cloudant/python-cloudant/blob/e0ba190f6ba07fe3522a668747128214ad573c7e/src/cloudant/document.py#L81-L104
def document_url(self): """ Constructs and returns the document URL. :returns: Document URL """ if '_id' not in self or self['_id'] is None: return None # handle design document url if self['_id'].startswith('_design/'): return '/'.join((...
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Constructs and returns the document URL. :returns: Document URL
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python
train
28.125
dagster-io/dagster
python_modules/dagster/dagster/core/definitions/decorators.py
https://github.com/dagster-io/dagster/blob/4119f8c773089de64831b1dfb9e168e353d401dc/python_modules/dagster/dagster/core/definitions/decorators.py#L173-L271
def solid(name=None, inputs=None, outputs=None, config_field=None, description=None): '''(decorator) Create a solid with specified parameters. This shortcut simplifies the core solid API by exploding arguments into kwargs of the transform function and omitting additional parameters when they are not needed...
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(decorator) Create a solid with specified parameters. This shortcut simplifies the core solid API by exploding arguments into kwargs of the transform function and omitting additional parameters when they are not needed. Parameters are otherwise as in the core API, :py:class:`SolidDefinition`. The deco...
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python
test
35.909091
zeromake/aiosqlite3
aiosqlite3/pool.py
https://github.com/zeromake/aiosqlite3/blob/1a74a062507e2df8f833a70885e69dca0ab3e7e7/aiosqlite3/pool.py#L194-L211
def sync_close(self): """ 同步关闭 """ if self._closed: return while self._free: conn = self._free.popleft() if not conn.closed: # pragma: no cover conn.sync_close() for conn in self._used: if not...
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同步关闭
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python
train
26.611111
mtomwing/purplex
purplex/grammar.py
https://github.com/mtomwing/purplex/blob/4072109e1d4395826983cd9d95ead2c1dfc1184e/purplex/grammar.py#L94-L108
def first(self, symbols): """Computes the intermediate FIRST set using symbols.""" ret = set() if EPSILON in symbols: return set([EPSILON]) for symbol in symbols: ret |= self._first[symbol] - set([EPSILON]) if EPSILON not in self._first[symbol]: ...
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Computes the intermediate FIRST set using symbols.
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python
valid
25.733333
google/transitfeed
transitfeed/schedule.py
https://github.com/google/transitfeed/blob/eb2991a3747ba541b2cb66502b305b6304a1f85f/transitfeed/schedule.py#L87-L90
def AddTableColumn(self, table, column): """Add column to table if it is not already there.""" if column not in self._table_columns[table]: self._table_columns[table].append(column)
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Add column to table if it is not already there.
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python
train
48
Genida/django-meerkat
src/meerkat/logs/boxes.py
https://github.com/Genida/django-meerkat/blob/486502a75bb0800266db785fd32717d8c0eb8deb/src/meerkat/logs/boxes.py#L118-L127
def widgets(self): """Get the items.""" widgets = [] for i, chart in enumerate(most_visited_pages_charts()): widgets.append(Widget(html_id='most_visited_chart_%d' % i, content=json.dumps(chart), template='meerkat/wid...
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Get the items.
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python
train
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capless/warrant
warrant/__init__.py
https://github.com/capless/warrant/blob/ff2e4793d8479e770f2461ef7cbc0c15ee784395/warrant/__init__.py#L349-L371
def admin_authenticate(self, password): """ Authenticate the user using admin super privileges :param password: User's password :return: """ auth_params = { 'USERNAME': self.username, 'PASSWORD': password } self._add_sec...
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Authenticate the user using admin super privileges :param password: User's password :return:
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python
train
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brocade/pynos
pynos/versions/ver_6/ver_6_0_1/yang/brocade_threshold_monitor.py
https://github.com/brocade/pynos/blob/bd8a34e98f322de3fc06750827d8bbc3a0c00380/pynos/versions/ver_6/ver_6_0_1/yang/brocade_threshold_monitor.py#L461-L472
def threshold_monitor_hidden_threshold_monitor_Cpu_actions(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") threshold_monitor_hidden = ET.SubElement(config, "threshold-monitor-hidden", xmlns="urn:brocade.com:mgmt:brocade-threshold-monitor") threshold_moni...
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Auto Generated Code
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python
train
51.083333
QInfer/python-qinfer
src/qinfer/abstract_model.py
https://github.com/QInfer/python-qinfer/blob/8170c84a0be1723f8c6b09e0d3c7a40a886f1fe3/src/qinfer/abstract_model.py#L284-L307
def simulate_experiment(self, modelparams, expparams, repeat=1): """ Produces data according to the given model parameters and experimental parameters, structured as a NumPy array. :param np.ndarray modelparams: A shape ``(n_models, n_modelparams)`` array of model parameter ...
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python
train
54.708333
singularityhub/singularity-python
singularity/analysis/reproduce/hash.py
https://github.com/singularityhub/singularity-python/blob/498c3433724b332f7493fec632d8daf479f47b82/singularity/analysis/reproduce/hash.py#L166-L175
def get_image_file_hash(image_path): '''get_image_hash will return an md5 hash of the file based on a criteria level. :param level: one of LOW, MEDIUM, HIGH :param image_path: full path to the singularity image ''' hasher = hashlib.md5() with open(image_path, "rb") as f: for chunk in ite...
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get_image_hash will return an md5 hash of the file based on a criteria level. :param level: one of LOW, MEDIUM, HIGH :param image_path: full path to the singularity image
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python
train
40.3
Azure/blobxfer
blobxfer/operations/download.py
https://github.com/Azure/blobxfer/blob/3eccbe7530cc6a20ab2d30f9e034b6f021817f34/blobxfer/operations/download.py#L685-L703
def _delete_extraneous_files(self): # type: (Downloader) -> None """Delete extraneous files cataloged :param Downloader self: this """ logger.info('attempting to delete {} extraneous files'.format( len(self._delete_after))) for file in self._delete_after: ...
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Delete extraneous files cataloged :param Downloader self: this
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python
train
41.105263
hyperledger/indy-plenum
plenum/server/ledger_req_handler.py
https://github.com/hyperledger/indy-plenum/blob/dcd144e238af7f17a869ffc9412f13dc488b7020/plenum/server/ledger_req_handler.py#L60-L71
def commit(self, txnCount, stateRoot, txnRoot, ppTime) -> List: """ :param txnCount: The number of requests to commit (The actual requests are picked up from the uncommitted list from the ledger) :param stateRoot: The state trie root after the txns are committed :param txnRoot: T...
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:param txnCount: The number of requests to commit (The actual requests are picked up from the uncommitted list from the ledger) :param stateRoot: The state trie root after the txns are committed :param txnRoot: The txn merkle root after the txns are committed :return: list of committed ...
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python
train
46.75
jorgenschaefer/elpy
elpy/refactor.py
https://github.com/jorgenschaefer/elpy/blob/ffd982f829b11e53f2be187c7b770423341f29bc/elpy/refactor.py#L283-L289
def refactor_create_inline(self, offset, only_this): """Inline the function call at point.""" refactor = create_inline(self.project, self.resource, offset) if only_this: return self._get_changes(refactor, remove=False, only_current=True) else: return self._get_cha...
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Inline the function call at point.
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python
train
51.571429
crypto101/merlyn
merlyn/exercise.py
https://github.com/crypto101/merlyn/blob/0f313210b9ea5385cc2e5b725dc766df9dc3284d/merlyn/exercise.py#L50-L58
def solveAndNotify(proto, exercise): """The user at the given AMP protocol has solved the given exercise. This will log the solution and notify the user. """ exercise.solvedBy(proto.user) proto.callRemote(ce.NotifySolved, identifier=exercise.identifier, tit...
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The user at the given AMP protocol has solved the given exercise. This will log the solution and notify the user.
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python
train
36.666667
daler/gffutils
gffutils/interface.py
https://github.com/daler/gffutils/blob/6f7f547cad898738a1bd0a999fd68ba68db2c524/gffutils/interface.py#L199-L212
def schema(self): """ Returns the database schema as a string. """ c = self.conn.cursor() c.execute( ''' SELECT sql FROM sqlite_master ''') results = [] for i, in c: if i is not None: results.append(i...
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Returns the database schema as a string.
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python
train
24.428571
pypa/setuptools
setuptools/msvc.py
https://github.com/pypa/setuptools/blob/83c667e0b2a98193851c07115d1af65011ed0fb6/setuptools/msvc.py#L1169-L1177
def UCRTIncludes(self): """ Microsoft Universal C Runtime SDK Include """ if self.vc_ver < 14.0: return [] include = os.path.join(self.si.UniversalCRTSdkDir, 'include') return [os.path.join(include, '%sucrt' % self._ucrt_subdir)]
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Microsoft Universal C Runtime SDK Include
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python
train
31.333333
googleapis/google-cloud-python
irm/google/cloud/irm_v1alpha2/gapic/incident_service_client.py
https://github.com/googleapis/google-cloud-python/blob/85e80125a59cb10f8cb105f25ecc099e4b940b50/irm/google/cloud/irm_v1alpha2/gapic/incident_service_client.py#L131-L138
def tag_path(cls, project, incident, tag): """Return a fully-qualified tag string.""" return google.api_core.path_template.expand( "projects/{project}/incidents/{incident}/tags/{tag}", project=project, incident=incident, tag=tag, )
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Return a fully-qualified tag string.
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python
train
37
RiotGames/cloud-inquisitor
backend/cloud_inquisitor/__init__.py
https://github.com/RiotGames/cloud-inquisitor/blob/181dc2566ca59fc855f695b7fcc2c3b934e6ee9f/backend/cloud_inquisitor/__init__.py#L21-L36
def get_local_aws_session(): """Returns a session for the local instance, not for a remote account Returns: :obj:`boto3:boto3.session.Session` """ if not all((app_config.aws_api.access_key, app_config.aws_api.secret_key)): return boto3.session.Session() else: # If we are not...
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Returns a session for the local instance, not for a remote account Returns: :obj:`boto3:boto3.session.Session`
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python
train
40.8125
Ex-Mente/auxi.0
auxi/modelling/business/structure.py
https://github.com/Ex-Mente/auxi.0/blob/2dcdae74154f136f8ca58289fe5b20772f215046/auxi/modelling/business/structure.py#L233-L246
def prepare_to_run(self, clock, period_count): """ Prepare the component for execution. :param clock: The clock containing the execution start time and execution period information. :param period_count: The total amount of periods this activity will be requested to b...
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Prepare the component for execution. :param clock: The clock containing the execution start time and execution period information. :param period_count: The total amount of periods this activity will be requested to be run for.
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python
valid
35.571429
openstax/cnx-epub
cnxepub/formatters.py
https://github.com/openstax/cnx-epub/blob/f648a309eff551b0a68a115a98ddf7858149a2ea/cnxepub/formatters.py#L98-L143
def _generate_ids(self, document, content): """Generate unique ids for html elements in page content so that it's possible to link to them. """ existing_ids = content.xpath('//*/@id') elements = [ 'p', 'dl', 'dt', 'dd', 'table', 'div', 'section', 'figure', ...
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Generate unique ids for html elements in page content so that it's possible to link to them.
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python
train
43.782609
dshean/pygeotools
pygeotools/lib/filtlib.py
https://github.com/dshean/pygeotools/blob/5ac745717c0098d01eb293ff1fe32fd7358c76ab/pygeotools/lib/filtlib.py#L315-L339
def rolling_fltr(dem, f=np.nanmedian, size=3, circular=True, origmask=False): """General rolling filter (default operator is median filter) Can input any function f Efficient for smaller arrays, correclty handles NaN, fills gaps """ print("Applying rolling filter: %s with size %s" % (f.__name__, s...
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General rolling filter (default operator is median filter) Can input any function f Efficient for smaller arrays, correclty handles NaN, fills gaps
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python
train
36.44
JasonKessler/scattertext
scattertext/termsignificance/ScaledFScoreSignificance.py
https://github.com/JasonKessler/scattertext/blob/cacf1f687d218ee8cae3fc05cc901db824bb1b81/scattertext/termsignificance/ScaledFScoreSignificance.py#L28-L45
def get_p_vals(self, X): ''' Imputes p-values from the Z-scores of `ScaledFScore` scores. Assuming incorrectly that the scaled f-scores are normally distributed. Parameters ---------- X : np.array Array of word counts, shape (N, 2) where N is the vocab size. X[:,0] is the positive class, while X[:,...
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Imputes p-values from the Z-scores of `ScaledFScore` scores. Assuming incorrectly that the scaled f-scores are normally distributed. Parameters ---------- X : np.array Array of word counts, shape (N, 2) where N is the vocab size. X[:,0] is the positive class, while X[:,1] is the negative class. Retu...
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python
train
27.222222
trec-kba/streamcorpus-pipeline
streamcorpus_pipeline/_pycassa_simple_table.py
https://github.com/trec-kba/streamcorpus-pipeline/blob/8bb82ea1beb83c6b40ed03fa1659df2897c2292a/streamcorpus_pipeline/_pycassa_simple_table.py#L199-L240
def get_random_available(self, max_iter=10000): ''' get a random key out of the first max_iter rows ''' c = 1 keeper = None ## note the ConsistencyLevel here. If we do not do this, and ## get all slick with things like column_count=0 and filter ## empty F...
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get a random key out of the first max_iter rows
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python
test
44.952381
matousc89/padasip
padasip/misc/error_evaluation.py
https://github.com/matousc89/padasip/blob/c969eadd7fa181a84da0554d737fc13c6450d16f/padasip/misc/error_evaluation.py#L152-L173
def MAE(x1, x2=-1): """ Mean absolute error - this function accepts two series of data or directly one series with error. **Args:** * `x1` - first data series or error (1d array) **Kwargs:** * `x2` - second series (1d array) if first series was not error directly,\\ then this sho...
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Mean absolute error - this function accepts two series of data or directly one series with error. **Args:** * `x1` - first data series or error (1d array) **Kwargs:** * `x2` - second series (1d array) if first series was not error directly,\\ then this should be the second series **...
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python
train
24.409091
Nekroze/partpy
partpy/sourcestring.py
https://github.com/Nekroze/partpy/blob/dbb7d2fb285464fc43d85bc31f5af46192d301f6/partpy/sourcestring.py#L71-L79
def eol_distance_last(self, offset=0): """Return the ammount of characters until the last newline.""" distance = 0 for char in reversed(self.string[:self.pos + offset]): if char == '\n': break else: distance += 1 return distance
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Return the ammount of characters until the last newline.
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python
train
34.222222
tanghaibao/jcvi
jcvi/projects/age.py
https://github.com/tanghaibao/jcvi/blob/d2e31a77b6ade7f41f3b321febc2b4744d1cdeca/jcvi/projects/age.py#L338-L354
def correlation(args): """ %prog correlation postgenomic-s.tsv Plot correlation of age vs. postgenomic features. """ p = OptionParser(correlation.__doc__) opts, args, iopts = p.set_image_options(args, figsize="12x8") if len(args) != 1: sys.exit(not p.print_help()) tsvfile, = a...
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%prog correlation postgenomic-s.tsv Plot correlation of age vs. postgenomic features.
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python
train
28.470588
SystemRDL/systemrdl-compiler
systemrdl/rdltypes.py
https://github.com/SystemRDL/systemrdl-compiler/blob/6ae64f2bb6ecbbe9db356e20e8ac94e85bdeed3a/systemrdl/rdltypes.py#L147-L174
def get_html_desc(self, markdown_inst=None): """ Translates the enum's 'desc' property into HTML. Any RDLFormatCode tags used in the description are converted to HTML. The text is also fed through a Markdown processor. The additional Markdown processing allows designers the cho...
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Translates the enum's 'desc' property into HTML. Any RDLFormatCode tags used in the description are converted to HTML. The text is also fed through a Markdown processor. The additional Markdown processing allows designers the choice to use a more modern lightweight markup language as a...
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python
train
36.142857
nprapps/copydoc
copydoc.py
https://github.com/nprapps/copydoc/blob/e1ab09b287beb0439748c319cf165cbc06c66624/copydoc.py#L189-L195
def _parse_href(self, href): """ Extract "real" URL from Google redirected url by getting `q` querystring parameter. """ params = parse_qs(urlsplit(href).query) return params.get('q')
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Extract "real" URL from Google redirected url by getting `q` querystring parameter.
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python
test
32.142857
toumorokoshi/sprinter
sprinter/core/globals.py
https://github.com/toumorokoshi/sprinter/blob/846697a7a087e69c61d075232e754d6975a64152/sprinter/core/globals.py#L85-L94
def create_default_config(): """ Create a default configuration object, with all parameters filled """ config = configparser.RawConfigParser() config.add_section('global') config.set('global', 'env_source_rc', False) config.add_section('shell') config.set('shell', 'bash', "true") config.set(...
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Create a default configuration object, with all parameters filled
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python
train
39.1
aestrivex/bctpy
bct/algorithms/generative.py
https://github.com/aestrivex/bctpy/blob/4cb0e759eb4a038750b07e23bd29958c400684b8/bct/algorithms/generative.py#L529-L596
def evaluate_generative_model(A, Atgt, D, eta, gamma=None, model_type='matching', model_var='powerlaw', epsilon=1e-6, seed=None): ''' Generates synthetic networks with parameters provided and evaluates their energy function. The energy function is defined as in Betzel et al. 2016. Basically it take...
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Generates synthetic networks with parameters provided and evaluates their energy function. The energy function is defined as in Betzel et al. 2016. Basically it takes the Kolmogorov-Smirnov statistics of 4 network measures; comparing the degree distributions, clustering coefficients, betweenness central...
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python
train
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mulkieran/justbases
src/justbases/_nats.py
https://github.com/mulkieran/justbases/blob/dd52ff4b3d11609f54b2673599ee4eeb20f9734f/src/justbases/_nats.py#L59-L91
def convert_to_int(value, from_base): """ Convert value to an int. :param value: the value to convert :type value: sequence of int :param int from_base: base of value :returns: the conversion result :rtype: int :raises ConvertError: if from_base is less t...
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Convert value to an int. :param value: the value to convert :type value: sequence of int :param int from_base: base of value :returns: the conversion result :rtype: int :raises ConvertError: if from_base is less than 2 :raises ConvertError: if elements in value o...
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python
train
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MacHu-GWU/pymongo_mate-project
pymongo_mate/pkg/pandas_mate/csv_io.py
https://github.com/MacHu-GWU/pymongo_mate-project/blob/be53170c2db54cb705b9e548d32ef26c773ff7f3/pymongo_mate/pkg/pandas_mate/csv_io.py#L56-L113
def index_row_dict_from_csv(path, index_col=None, iterator=False, chunksize=None, skiprows=None, nrows=None, use_ordered_dict=True, ...
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Read the csv into a dictionary. The key is it's index, the value is the dictionary form of the row. :param path: csv file path. :param index_col: None or str, the column that used as index. :param iterator: :param chunksize: :param skiprows: :param nrows: :param use_ordered_dict: :...
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python
train
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softlayer/softlayer-python
SoftLayer/CLI/account/event_detail.py
https://github.com/softlayer/softlayer-python/blob/9f181be08cc3668353b05a6de0cb324f52cff6fa/SoftLayer/CLI/account/event_detail.py#L32-L45
def basic_event_table(event): """Formats a basic event table""" table = formatting.Table(["Id", "Status", "Type", "Start", "End"], title=utils.clean_splitlines(event.get('subject'))) table.add_row([ event.get('id'), utils.lookup(event, 'statusCode', 'name'), ...
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Formats a basic event table
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python
train
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achedeuzot/django-timestampable
django_timestampable/models.py
https://github.com/achedeuzot/django-timestampable/blob/44d774655c383e43d931e64ac5e1d41dd737873d/django_timestampable/models.py#L31-L41
def update_timestampable_model(sender, instance, *args, **kwargs): ''' Using signals guarantees that timestamps are set no matter what: loading fixtures, bulk inserts, bulk updates, etc. Indeed, the `save()` method is *not* called when using fixtures. ''' if not isinstance(instance, Timestampabl...
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Using signals guarantees that timestamps are set no matter what: loading fixtures, bulk inserts, bulk updates, etc. Indeed, the `save()` method is *not* called when using fixtures.
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python
train
38.636364
obriencj/python-javatools
javatools/change.py
https://github.com/obriencj/python-javatools/blob/9e2332b452ddc508bed0615937dddcb2cf051557/javatools/change.py#L471-L488
def is_ignored(self, options): """ If we have changed children and all the children which are changes are ignored, then we are ignored. Otherwise, we are not ignored """ if not self.is_change(): return False changes = self.collect() if not ch...
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If we have changed children and all the children which are changes are ignored, then we are ignored. Otherwise, we are not ignored
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python
train
26.944444
pandas-dev/pandas
pandas/core/arrays/categorical.py
https://github.com/pandas-dev/pandas/blob/9feb3ad92cc0397a04b665803a49299ee7aa1037/pandas/core/arrays/categorical.py#L776-L846
def set_categories(self, new_categories, ordered=None, rename=False, inplace=False): """ Set the categories to the specified new_categories. `new_categories` can include new categories (which will result in unused categories) or remove old categories (which result...
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Set the categories to the specified new_categories. `new_categories` can include new categories (which will result in unused categories) or remove old categories (which results in values set to NaN). If `rename==True`, the categories will simple be renamed (less or more items than in ol...
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python
train
40.549296