repo stringlengths 7 55 | path stringlengths 4 223 | url stringlengths 87 315 | code stringlengths 75 104k | code_tokens list | docstring stringlengths 1 46.9k | docstring_tokens list | language stringclasses 1
value | partition stringclasses 3
values | avg_line_len float64 7.91 980 |
|---|---|---|---|---|---|---|---|---|---|
IBMStreams/pypi.streamsx | streamsx/rest.py | https://github.com/IBMStreams/pypi.streamsx/blob/abd67b4757120f6f805787fba390f53e9df9cdd8/streamsx/rest.py#L309-L342 | def _get_vcap_services(vcap_services=None):
"""Retrieves the VCAP Services information from the `ConfigParams.VCAP_SERVICES` field in the config object. If
`vcap_services` is not specified, it takes the information from VCAP_SERVICES environment variable.
Args:
vcap_services (str): Try to parse as ... | [
"def",
"_get_vcap_services",
"(",
"vcap_services",
"=",
"None",
")",
":",
"vcap_services",
"=",
"vcap_services",
"or",
"os",
".",
"environ",
".",
"get",
"(",
"'VCAP_SERVICES'",
")",
"if",
"not",
"vcap_services",
":",
"raise",
"ValueError",
"(",
"\"VCAP_SERVICES ... | Retrieves the VCAP Services information from the `ConfigParams.VCAP_SERVICES` field in the config object. If
`vcap_services` is not specified, it takes the information from VCAP_SERVICES environment variable.
Args:
vcap_services (str): Try to parse as a JSON string, otherwise, try open it as a file.
... | [
"Retrieves",
"the",
"VCAP",
"Services",
"information",
"from",
"the",
"ConfigParams",
".",
"VCAP_SERVICES",
"field",
"in",
"the",
"config",
"object",
".",
"If",
"vcap_services",
"is",
"not",
"specified",
"it",
"takes",
"the",
"information",
"from",
"VCAP_SERVICES"... | python | train | 46.058824 |
thomasvandoren/bugzscout-py | bugzscout/ext/cli.py | https://github.com/thomasvandoren/bugzscout-py/blob/514528e958a97e0e7b36870037c5c69661511824/bugzscout/ext/cli.py#L63-L94 | def _parse_args():
"""Parse and return command line arguments."""
parser = argparse.ArgumentParser(
description=__doc__,
formatter_class=_CliFormatter)
parser.add_argument('-v', '--verbose', action='store_true',
help='Enable verbose output.')
fb_group = parser.ad... | [
"def",
"_parse_args",
"(",
")",
":",
"parser",
"=",
"argparse",
".",
"ArgumentParser",
"(",
"description",
"=",
"__doc__",
",",
"formatter_class",
"=",
"_CliFormatter",
")",
"parser",
".",
"add_argument",
"(",
"'-v'",
",",
"'--verbose'",
",",
"action",
"=",
... | Parse and return command line arguments. | [
"Parse",
"and",
"return",
"command",
"line",
"arguments",
"."
] | python | train | 41.78125 |
angr/claripy | claripy/vsa/discrete_strided_interval_set.py | https://github.com/angr/claripy/blob/4ed61924880af1ea8fb778047d896ec0156412a6/claripy/vsa/discrete_strided_interval_set.py#L536-L552 | def _union_with_dsis(self, dsis):
"""
Union with another DiscreteStridedIntervalSet.
:param dsis:
:return:
"""
copied = self.copy()
for a in dsis._si_set:
copied = copied.union(a)
if isinstance(copied, DiscreteStridedIntervalSet):
... | [
"def",
"_union_with_dsis",
"(",
"self",
",",
"dsis",
")",
":",
"copied",
"=",
"self",
".",
"copy",
"(",
")",
"for",
"a",
"in",
"dsis",
".",
"_si_set",
":",
"copied",
"=",
"copied",
".",
"union",
"(",
"a",
")",
"if",
"isinstance",
"(",
"copied",
","... | Union with another DiscreteStridedIntervalSet.
:param dsis:
:return: | [
"Union",
"with",
"another",
"DiscreteStridedIntervalSet",
"."
] | python | train | 21.705882 |
MaxStrange/AudioSegment | audiosegment.py | https://github.com/MaxStrange/AudioSegment/blob/1daefb8de626ddff3ff7016697c3ad31d262ecd6/audiosegment.py#L1142-L1151 | def silent(duration=1000, frame_rate=11025):
"""
Creates an AudioSegment object of the specified duration/frame_rate filled with digital silence.
:param duration: The duration of the returned object in ms.
:param frame_rate: The samples per second of the returned object.
:returns: AudioSegment obje... | [
"def",
"silent",
"(",
"duration",
"=",
"1000",
",",
"frame_rate",
"=",
"11025",
")",
":",
"seg",
"=",
"pydub",
".",
"AudioSegment",
".",
"silent",
"(",
"duration",
"=",
"duration",
",",
"frame_rate",
"=",
"frame_rate",
")",
"return",
"AudioSegment",
"(",
... | Creates an AudioSegment object of the specified duration/frame_rate filled with digital silence.
:param duration: The duration of the returned object in ms.
:param frame_rate: The samples per second of the returned object.
:returns: AudioSegment object filled with pure digital silence. | [
"Creates",
"an",
"AudioSegment",
"object",
"of",
"the",
"specified",
"duration",
"/",
"frame_rate",
"filled",
"with",
"digital",
"silence",
"."
] | python | test | 46.6 |
alfred82santa/dirty-models | dirty_models/model_types.py | https://github.com/alfred82santa/dirty-models/blob/354becdb751b21f673515eae928c256c7e923c50/dirty_models/model_types.py#L395-L426 | def get_attrs_by_path(self, field_path, stop_first=False):
"""
It returns list of values looked up by field path.
Field path is dot-formatted string path: ``parent_field.child_field``.
:param field_path: field path. It allows ``*`` as wildcard.
:type field_path: list or None.
... | [
"def",
"get_attrs_by_path",
"(",
"self",
",",
"field_path",
",",
"stop_first",
"=",
"False",
")",
":",
"index_list",
",",
"next_field",
"=",
"self",
".",
"_get_indexes_by_path",
"(",
"field_path",
")",
"values",
"=",
"[",
"]",
"for",
"idx",
"in",
"index_list... | It returns list of values looked up by field path.
Field path is dot-formatted string path: ``parent_field.child_field``.
:param field_path: field path. It allows ``*`` as wildcard.
:type field_path: list or None.
:param stop_first: Stop iteration on first value looked up. Default: Fals... | [
"It",
"returns",
"list",
"of",
"values",
"looked",
"up",
"by",
"field",
"path",
".",
"Field",
"path",
"is",
"dot",
"-",
"formatted",
"string",
"path",
":",
"parent_field",
".",
"child_field",
"."
] | python | train | 35.28125 |
keon/algorithms | algorithms/arrays/three_sum.py | https://github.com/keon/algorithms/blob/4d6569464a62a75c1357acc97e2dd32ee2f9f4a3/algorithms/arrays/three_sum.py#L18-L48 | def three_sum(array):
"""
:param array: List[int]
:return: Set[ Tuple[int, int, int] ]
"""
res = set()
array.sort()
for i in range(len(array) - 2):
if i > 0 and array[i] == array[i - 1]:
continue
l, r = i + 1, len(array) - 1
while l < r:
s = ar... | [
"def",
"three_sum",
"(",
"array",
")",
":",
"res",
"=",
"set",
"(",
")",
"array",
".",
"sort",
"(",
")",
"for",
"i",
"in",
"range",
"(",
"len",
"(",
"array",
")",
"-",
"2",
")",
":",
"if",
"i",
">",
"0",
"and",
"array",
"[",
"i",
"]",
"==",... | :param array: List[int]
:return: Set[ Tuple[int, int, int] ] | [
":",
"param",
"array",
":",
"List",
"[",
"int",
"]",
":",
"return",
":",
"Set",
"[",
"Tuple",
"[",
"int",
"int",
"int",
"]",
"]"
] | python | train | 25.419355 |
Tanganelli/CoAPthon3 | coapthon/caching/cache.py | https://github.com/Tanganelli/CoAPthon3/blob/985763bfe2eb9e00f49ec100c5b8877c2ed7d531/coapthon/caching/cache.py#L89-L113 | def search_response(self, request):
"""
creates a key from the request and searches the cache with it
:param request:
:return CacheElement: returns None if there's a cache miss
"""
logger.debug("Cache Search Response")
if self.cache.is_empty() is True:
... | [
"def",
"search_response",
"(",
"self",
",",
"request",
")",
":",
"logger",
".",
"debug",
"(",
"\"Cache Search Response\"",
")",
"if",
"self",
".",
"cache",
".",
"is_empty",
"(",
")",
"is",
"True",
":",
"logger",
".",
"debug",
"(",
"\"Empty Cache\"",
")",
... | creates a key from the request and searches the cache with it
:param request:
:return CacheElement: returns None if there's a cache miss | [
"creates",
"a",
"key",
"from",
"the",
"request",
"and",
"searches",
"the",
"cache",
"with",
"it"
] | python | train | 26 |
vertexproject/synapse | synapse/lib/certdir.py | https://github.com/vertexproject/synapse/blob/22e67c5a8f6d7caddbcf34b39ab1bd2d6c4a6e0b/synapse/lib/certdir.py#L729-L745 | def isUserCert(self, name):
'''
Checks if a user certificate exists.
Args:
name (str): The name of the user keypair.
Examples:
Check if the user cert "myuser" exists:
exists = cdir.isUserCert('myuser')
Returns:
bool: True if... | [
"def",
"isUserCert",
"(",
"self",
",",
"name",
")",
":",
"crtpath",
"=",
"self",
".",
"_getPathJoin",
"(",
"'users'",
",",
"'%s.crt'",
"%",
"name",
")",
"return",
"os",
".",
"path",
".",
"isfile",
"(",
"crtpath",
")"
] | Checks if a user certificate exists.
Args:
name (str): The name of the user keypair.
Examples:
Check if the user cert "myuser" exists:
exists = cdir.isUserCert('myuser')
Returns:
bool: True if the certificate is present, False otherwise. | [
"Checks",
"if",
"a",
"user",
"certificate",
"exists",
"."
] | python | train | 27.176471 |
SwoopSearch/pyaddress | address/address.py | https://github.com/SwoopSearch/pyaddress/blob/62ebb07a6840e710d256406a8ec1d06abec0e1c4/address/address.py#L348-L375 | def check_apartment_number(self, token):
"""
Finds apartment, unit, #, etc, regardless of spot in string. This needs to come after everything else has been ruled out,
because it has a lot of false positives.
"""
apartment_regexes = [r'#\w+ & \w+', '#\w+ rm \w+', "#\w+-\w", r'apt ... | [
"def",
"check_apartment_number",
"(",
"self",
",",
"token",
")",
":",
"apartment_regexes",
"=",
"[",
"r'#\\w+ & \\w+'",
",",
"'#\\w+ rm \\w+'",
",",
"\"#\\w+-\\w\"",
",",
"r'apt #{0,1}\\w+'",
",",
"r'apartment #{0,1}\\w+'",
",",
"r'#\\w+'",
",",
"r'# \\w+'",
",",
"r... | Finds apartment, unit, #, etc, regardless of spot in string. This needs to come after everything else has been ruled out,
because it has a lot of false positives. | [
"Finds",
"apartment",
"unit",
"#",
"etc",
"regardless",
"of",
"spot",
"in",
"string",
".",
"This",
"needs",
"to",
"come",
"after",
"everything",
"else",
"has",
"been",
"ruled",
"out",
"because",
"it",
"has",
"a",
"lot",
"of",
"false",
"positives",
"."
] | python | train | 56.214286 |
tensorflow/tensor2tensor | tensor2tensor/layers/modalities.py | https://github.com/tensorflow/tensor2tensor/blob/272500b6efe353aeb638d2745ed56e519462ca31/tensor2tensor/layers/modalities.py#L552-L566 | def video_bitwise_bottom(x, model_hparams, vocab_size):
"""Bottom transformation for embedding video bitwise."""
pixel_embedding_size = 64
inputs = x
with tf.variable_scope("video_modality_bitwise", reuse=tf.AUTO_REUSE):
common_layers.summarize_video(inputs, "bottom")
# Embed bitwise.
assert vocab_s... | [
"def",
"video_bitwise_bottom",
"(",
"x",
",",
"model_hparams",
",",
"vocab_size",
")",
":",
"pixel_embedding_size",
"=",
"64",
"inputs",
"=",
"x",
"with",
"tf",
".",
"variable_scope",
"(",
"\"video_modality_bitwise\"",
",",
"reuse",
"=",
"tf",
".",
"AUTO_REUSE",... | Bottom transformation for embedding video bitwise. | [
"Bottom",
"transformation",
"for",
"embedding",
"video",
"bitwise",
"."
] | python | train | 38.866667 |
MoseleyBioinformaticsLab/nmrstarlib | nmrstarlib/nmrstarlib.py | https://github.com/MoseleyBioinformaticsLab/nmrstarlib/blob/f2adabbca04d5a134ce6ba3211099d1457787ff2/nmrstarlib/nmrstarlib.py#L399-L423 | def _build_loop(self, lexer):
"""Build saveframe loop.
:param lexer: instance of lexical analyzer.
:type lexer: :func:`~nmrstarlib.bmrblex.bmrblex`
:return: Fields and values of the loop.
:rtype: :py:class:`tuple`
"""
fields = []
values = []
toke... | [
"def",
"_build_loop",
"(",
"self",
",",
"lexer",
")",
":",
"fields",
"=",
"[",
"]",
"values",
"=",
"[",
"]",
"token",
"=",
"next",
"(",
"lexer",
")",
"while",
"token",
"[",
"0",
"]",
"==",
"u\"_\"",
":",
"fields",
".",
"append",
"(",
"token",
"["... | Build saveframe loop.
:param lexer: instance of lexical analyzer.
:type lexer: :func:`~nmrstarlib.bmrblex.bmrblex`
:return: Fields and values of the loop.
:rtype: :py:class:`tuple` | [
"Build",
"saveframe",
"loop",
"."
] | python | train | 32.64 |
veltzer/pylogconf | config/helpers.py | https://github.com/veltzer/pylogconf/blob/a3e230a073380b43b5d5096f40bb37ae28f3e430/config/helpers.py#L24-L35 | def find_packages(path: str) -> List[str]:
"""
A better version of find_packages than what setuptools offers
This function needs to be deterministic.
:param path:
:return:
"""
ret = []
for root, _dir, files in os.walk(path):
if '__init__.py' in files:
ret.append(root.... | [
"def",
"find_packages",
"(",
"path",
":",
"str",
")",
"->",
"List",
"[",
"str",
"]",
":",
"ret",
"=",
"[",
"]",
"for",
"root",
",",
"_dir",
",",
"files",
"in",
"os",
".",
"walk",
"(",
"path",
")",
":",
"if",
"'__init__.py'",
"in",
"files",
":",
... | A better version of find_packages than what setuptools offers
This function needs to be deterministic.
:param path:
:return: | [
"A",
"better",
"version",
"of",
"find_packages",
"than",
"what",
"setuptools",
"offers",
"This",
"function",
"needs",
"to",
"be",
"deterministic",
".",
":",
"param",
"path",
":",
":",
"return",
":"
] | python | train | 29.166667 |
Robpol86/sphinxcontrib-versioning | sphinxcontrib/versioning/git.py | https://github.com/Robpol86/sphinxcontrib-versioning/blob/920edec0ac764081b583a2ecf4e6952762b9dbf2/sphinxcontrib/versioning/git.py#L181-L209 | def list_remote(local_root):
"""Get remote branch/tag latest SHAs.
:raise GitError: When git ls-remote fails.
:param str local_root: Local path to git root directory.
:return: List of tuples containing strings. Each tuple is sha, name, kind.
:rtype: list
"""
command = ['git', 'ls-remote',... | [
"def",
"list_remote",
"(",
"local_root",
")",
":",
"command",
"=",
"[",
"'git'",
",",
"'ls-remote'",
",",
"'--heads'",
",",
"'--tags'",
"]",
"try",
":",
"output",
"=",
"run_command",
"(",
"local_root",
",",
"command",
")",
"except",
"CalledProcessError",
"as... | Get remote branch/tag latest SHAs.
:raise GitError: When git ls-remote fails.
:param str local_root: Local path to git root directory.
:return: List of tuples containing strings. Each tuple is sha, name, kind.
:rtype: list | [
"Get",
"remote",
"branch",
"/",
"tag",
"latest",
"SHAs",
"."
] | python | train | 39.172414 |
GoogleCloudPlatform/appengine-gcs-client | python/src/cloudstorage/storage_api.py | https://github.com/GoogleCloudPlatform/appengine-gcs-client/blob/d11078331ecd915d753c886e96a80133599f3f98/python/src/cloudstorage/storage_api.py#L374-L419 | def read(self, size=-1):
"""Read data from RAW file.
Args:
size: Number of bytes to read as integer. Actual number of bytes
read is always equal to size unless EOF is reached. If size is
negative or unspecified, read the entire file.
Returns:
data read as str.
Raises:
... | [
"def",
"read",
"(",
"self",
",",
"size",
"=",
"-",
"1",
")",
":",
"self",
".",
"_check_open",
"(",
")",
"if",
"not",
"self",
".",
"_remaining",
"(",
")",
":",
"return",
"''",
"data_list",
"=",
"[",
"]",
"while",
"True",
":",
"remaining",
"=",
"se... | Read data from RAW file.
Args:
size: Number of bytes to read as integer. Actual number of bytes
read is always equal to size unless EOF is reached. If size is
negative or unspecified, read the entire file.
Returns:
data read as str.
Raises:
IOError: When this buffer is c... | [
"Read",
"data",
"from",
"RAW",
"file",
"."
] | python | train | 27.021739 |
PyCQA/pylint | pylint/checkers/base.py | https://github.com/PyCQA/pylint/blob/2bf5c61a3ff6ae90613b81679de42c0f19aea600/pylint/checkers/base.py#L2236-L2243 | def register(linter):
"""required method to auto register this checker"""
linter.register_checker(BasicErrorChecker(linter))
linter.register_checker(BasicChecker(linter))
linter.register_checker(NameChecker(linter))
linter.register_checker(DocStringChecker(linter))
linter.register_checker(PassCh... | [
"def",
"register",
"(",
"linter",
")",
":",
"linter",
".",
"register_checker",
"(",
"BasicErrorChecker",
"(",
"linter",
")",
")",
"linter",
".",
"register_checker",
"(",
"BasicChecker",
"(",
"linter",
")",
")",
"linter",
".",
"register_checker",
"(",
"NameChec... | required method to auto register this checker | [
"required",
"method",
"to",
"auto",
"register",
"this",
"checker"
] | python | test | 47.75 |
SBRG/ssbio | ssbio/protein/structure/structprop.py | https://github.com/SBRG/ssbio/blob/e9449e64ffc1a1f5ad07e5849aa12a650095f8a2/ssbio/protein/structure/structprop.py#L620-L666 | def view_structure(self, only_chains=None, opacity=1.0, recolor=False, gui=False):
"""Use NGLviewer to display a structure in a Jupyter notebook
Args:
only_chains (str, list): Chain ID or IDs to display
opacity (float): Opacity of the structure
recolor (bool): If str... | [
"def",
"view_structure",
"(",
"self",
",",
"only_chains",
"=",
"None",
",",
"opacity",
"=",
"1.0",
",",
"recolor",
"=",
"False",
",",
"gui",
"=",
"False",
")",
":",
"# TODO: show_structure_file does not work for MMTF files - need to check for that and load accordingly",
... | Use NGLviewer to display a structure in a Jupyter notebook
Args:
only_chains (str, list): Chain ID or IDs to display
opacity (float): Opacity of the structure
recolor (bool): If structure should be cleaned and recolored to silver
gui (bool): If the NGLview GUI sh... | [
"Use",
"NGLviewer",
"to",
"display",
"a",
"structure",
"in",
"a",
"Jupyter",
"notebook"
] | python | train | 39.659574 |
AguaClara/aguaclara | aguaclara/design/cdc.py | https://github.com/AguaClara/aguaclara/blob/8dd4e734768b166a7fc2b60388a24df2f93783fc/aguaclara/design/cdc.py#L102-L110 | def _len_tube(Flow, Diam, HeadLoss, conc_chem, temp, en_chem, KMinor):
"""Length of tube required to get desired head loss at maximum flow based on
the Hagen-Poiseuille equation."""
num1 = pc.gravity.magnitude * HeadLoss * np.pi * (Diam**4)
denom1 = 128 * viscosity_kinematic_chem(conc_chem, temp, en_che... | [
"def",
"_len_tube",
"(",
"Flow",
",",
"Diam",
",",
"HeadLoss",
",",
"conc_chem",
",",
"temp",
",",
"en_chem",
",",
"KMinor",
")",
":",
"num1",
"=",
"pc",
".",
"gravity",
".",
"magnitude",
"*",
"HeadLoss",
"*",
"np",
".",
"pi",
"*",
"(",
"Diam",
"**... | Length of tube required to get desired head loss at maximum flow based on
the Hagen-Poiseuille equation. | [
"Length",
"of",
"tube",
"required",
"to",
"get",
"desired",
"head",
"loss",
"at",
"maximum",
"flow",
"based",
"on",
"the",
"Hagen",
"-",
"Poiseuille",
"equation",
"."
] | python | train | 54.444444 |
avihad/twistes | twistes/client.py | https://github.com/avihad/twistes/blob/9ab8f5aa088b8886aefe3dec85a400e5035e034a/twistes/client.py#L63-L79 | def get(self, index, id, fields=None, doc_type=EsConst.ALL_VALUES, **query_params):
"""
Retrieve specific record by id
`<http://www.elastic.co/guide/en/elasticsearch/reference/current/docs-get.html>`_
:param index: the index name to query
:param id: the id of the record
:... | [
"def",
"get",
"(",
"self",
",",
"index",
",",
"id",
",",
"fields",
"=",
"None",
",",
"doc_type",
"=",
"EsConst",
".",
"ALL_VALUES",
",",
"*",
"*",
"query_params",
")",
":",
"if",
"fields",
":",
"query_params",
"[",
"EsConst",
".",
"FIELDS",
"]",
"=",... | Retrieve specific record by id
`<http://www.elastic.co/guide/en/elasticsearch/reference/current/docs-get.html>`_
:param index: the index name to query
:param id: the id of the record
:param fields: the fields you what to fetch from the record (str separated by comma's)
:param doc... | [
"Retrieve",
"specific",
"record",
"by",
"id",
"<http",
":",
"//",
"www",
".",
"elastic",
".",
"co",
"/",
"guide",
"/",
"en",
"/",
"elasticsearch",
"/",
"reference",
"/",
"current",
"/",
"docs",
"-",
"get",
".",
"html",
">",
"_",
":",
"param",
"index"... | python | train | 44.294118 |
tensorflow/cleverhans | cleverhans/utils.py | https://github.com/tensorflow/cleverhans/blob/97488e215760547b81afc53f5e5de8ba7da5bd98/cleverhans/utils.py#L167-L173 | def pair_visual(*args, **kwargs):
"""Deprecation wrapper"""
warnings.warn("`pair_visual` has moved to `cleverhans.plot.pyplot_image`. "
"cleverhans.utils.pair_visual may be removed on or after "
"2019-04-24.")
from cleverhans.plot.pyplot_image import pair_visual as new_pair_visual
... | [
"def",
"pair_visual",
"(",
"*",
"args",
",",
"*",
"*",
"kwargs",
")",
":",
"warnings",
".",
"warn",
"(",
"\"`pair_visual` has moved to `cleverhans.plot.pyplot_image`. \"",
"\"cleverhans.utils.pair_visual may be removed on or after \"",
"\"2019-04-24.\"",
")",
"from",
"cleverh... | Deprecation wrapper | [
"Deprecation",
"wrapper"
] | python | train | 50.714286 |
google/grr | grr/server/grr_response_server/gui/wsgiapp.py | https://github.com/google/grr/blob/5cef4e8e2f0d5df43ea4877e9c798e0bf60bfe74/grr/server/grr_response_server/gui/wsgiapp.py#L226-L269 | def _HandleHomepage(self, request):
"""Renders GRR home page by rendering base.html Jinja template."""
_ = request
env = jinja2.Environment(
loader=jinja2.FileSystemLoader(config.CONFIG["AdminUI.template_root"]),
autoescape=True)
create_time = psutil.Process(os.getpid()).create_time()... | [
"def",
"_HandleHomepage",
"(",
"self",
",",
"request",
")",
":",
"_",
"=",
"request",
"env",
"=",
"jinja2",
".",
"Environment",
"(",
"loader",
"=",
"jinja2",
".",
"FileSystemLoader",
"(",
"config",
".",
"CONFIG",
"[",
"\"AdminUI.template_root\"",
"]",
")",
... | Renders GRR home page by rendering base.html Jinja template. | [
"Renders",
"GRR",
"home",
"page",
"by",
"rendering",
"base",
".",
"html",
"Jinja",
"template",
"."
] | python | train | 33.590909 |
sethmlarson/virtualbox-python | virtualbox/library.py | https://github.com/sethmlarson/virtualbox-python/blob/706c8e3f6e3aee17eb06458e73cbb4bc2d37878b/virtualbox/library.py#L19375-L19388 | def environment_schedule_unset(self, name):
"""Schedules unsetting (removing) an environment variable when creating
the next guest process. This affects the
:py:func:`IGuestSession.environment_changes` attribute.
in name of type str
Name of the environment variable to unse... | [
"def",
"environment_schedule_unset",
"(",
"self",
",",
"name",
")",
":",
"if",
"not",
"isinstance",
"(",
"name",
",",
"basestring",
")",
":",
"raise",
"TypeError",
"(",
"\"name can only be an instance of type basestring\"",
")",
"self",
".",
"_call",
"(",
"\"envir... | Schedules unsetting (removing) an environment variable when creating
the next guest process. This affects the
:py:func:`IGuestSession.environment_changes` attribute.
in name of type str
Name of the environment variable to unset. This cannot be empty
nor can it contain... | [
"Schedules",
"unsetting",
"(",
"removing",
")",
"an",
"environment",
"variable",
"when",
"creating",
"the",
"next",
"guest",
"process",
".",
"This",
"affects",
"the",
":",
"py",
":",
"func",
":",
"IGuestSession",
".",
"environment_changes",
"attribute",
"."
] | python | train | 42.642857 |
harlowja/fasteners | fasteners/lock.py | https://github.com/harlowja/fasteners/blob/8f3bbab0204a50037448a8fad7a6bf12eb1a2695/fasteners/lock.py#L205-L238 | def write_lock(self):
"""Context manager that grants a write lock.
Will wait until no active readers. Blocks readers after acquiring.
Guaranteed for locks to be processed in fair order (FIFO).
Raises a ``RuntimeError`` if an active reader attempts to acquire
a lock.
""... | [
"def",
"write_lock",
"(",
"self",
")",
":",
"me",
"=",
"self",
".",
"_current_thread",
"(",
")",
"i_am_writer",
"=",
"self",
".",
"is_writer",
"(",
"check_pending",
"=",
"False",
")",
"if",
"self",
".",
"is_reader",
"(",
")",
"and",
"not",
"i_am_writer",... | Context manager that grants a write lock.
Will wait until no active readers. Blocks readers after acquiring.
Guaranteed for locks to be processed in fair order (FIFO).
Raises a ``RuntimeError`` if an active reader attempts to acquire
a lock. | [
"Context",
"manager",
"that",
"grants",
"a",
"write",
"lock",
"."
] | python | train | 38.852941 |
saltstack/salt | salt/modules/boto_elasticache.py | https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/boto_elasticache.py#L390-L400 | def list_cache_subnet_groups(name=None, region=None, key=None,
keyid=None, profile=None):
'''
Return a list of all cache subnet group names
CLI example::
salt myminion boto_elasticache.list_subnet_groups region=us-east-1
'''
return [g['CacheSubnetGroupName'] fo... | [
"def",
"list_cache_subnet_groups",
"(",
"name",
"=",
"None",
",",
"region",
"=",
"None",
",",
"key",
"=",
"None",
",",
"keyid",
"=",
"None",
",",
"profile",
"=",
"None",
")",
":",
"return",
"[",
"g",
"[",
"'CacheSubnetGroupName'",
"]",
"for",
"g",
"in"... | Return a list of all cache subnet group names
CLI example::
salt myminion boto_elasticache.list_subnet_groups region=us-east-1 | [
"Return",
"a",
"list",
"of",
"all",
"cache",
"subnet",
"group",
"names"
] | python | train | 35.636364 |
videntity/django-djmongo | djmongo/console/utils.py | https://github.com/videntity/django-djmongo/blob/7534e0981a2bc12634cf3f1ed03353623dc57565/djmongo/console/utils.py#L89-L108 | def create_mongo_db(database_name, collection_name, initial_document):
"""Create a new database and collection by inserting one document."""
response_dict = {}
try:
mongodb_client_url = getattr(settings, 'MONGODB_CLIENT',
'mongodb://localhost:27017/')
mc = Mo... | [
"def",
"create_mongo_db",
"(",
"database_name",
",",
"collection_name",
",",
"initial_document",
")",
":",
"response_dict",
"=",
"{",
"}",
"try",
":",
"mongodb_client_url",
"=",
"getattr",
"(",
"settings",
",",
"'MONGODB_CLIENT'",
",",
"'mongodb://localhost:27017/'",
... | Create a new database and collection by inserting one document. | [
"Create",
"a",
"new",
"database",
"and",
"collection",
"by",
"inserting",
"one",
"document",
"."
] | python | train | 33.55 |
fastai/fastai | fastai/train.py | https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/train.py#L144-L147 | def from_learner(cls, learn: Learner, ds_type:DatasetType=DatasetType.Valid):
"Create an instance of `ClassificationInterpretation`"
preds = learn.get_preds(ds_type=ds_type, with_loss=True)
return cls(learn, *preds) | [
"def",
"from_learner",
"(",
"cls",
",",
"learn",
":",
"Learner",
",",
"ds_type",
":",
"DatasetType",
"=",
"DatasetType",
".",
"Valid",
")",
":",
"preds",
"=",
"learn",
".",
"get_preds",
"(",
"ds_type",
"=",
"ds_type",
",",
"with_loss",
"=",
"True",
")",
... | Create an instance of `ClassificationInterpretation` | [
"Create",
"an",
"instance",
"of",
"ClassificationInterpretation"
] | python | train | 59.25 |
pycontribs/pyrax | pyrax/cloudmonitoring.py | https://github.com/pycontribs/pyrax/blob/9ddfd5064b3a292d7337906f3b2d5dce95b50b99/pyrax/cloudmonitoring.py#L720-L731 | def update_entity(self, entity, agent=None, metadata=None):
"""
Updates the specified entity's values with the supplied parameters.
"""
body = {}
if agent:
body["agent_id"] = utils.get_id(agent)
if metadata:
body["metadata"] = metadata
if b... | [
"def",
"update_entity",
"(",
"self",
",",
"entity",
",",
"agent",
"=",
"None",
",",
"metadata",
"=",
"None",
")",
":",
"body",
"=",
"{",
"}",
"if",
"agent",
":",
"body",
"[",
"\"agent_id\"",
"]",
"=",
"utils",
".",
"get_id",
"(",
"agent",
")",
"if"... | Updates the specified entity's values with the supplied parameters. | [
"Updates",
"the",
"specified",
"entity",
"s",
"values",
"with",
"the",
"supplied",
"parameters",
"."
] | python | train | 36.75 |
oscarbranson/latools | latools/latools.py | https://github.com/oscarbranson/latools/blob/cd25a650cfee318152f234d992708511f7047fbe/latools/latools.py#L2490-L2525 | def filter_defragment(self, threshold, mode='include', filt=True, samples=None, subset=None):
"""
Remove 'fragments' from the calculated filter
Parameters
----------
threshold : int
Contiguous data regions that contain this number
or fewer points are cons... | [
"def",
"filter_defragment",
"(",
"self",
",",
"threshold",
",",
"mode",
"=",
"'include'",
",",
"filt",
"=",
"True",
",",
"samples",
"=",
"None",
",",
"subset",
"=",
"None",
")",
":",
"if",
"samples",
"is",
"not",
"None",
":",
"subset",
"=",
"self",
"... | Remove 'fragments' from the calculated filter
Parameters
----------
threshold : int
Contiguous data regions that contain this number
or fewer points are considered 'fragments'
mode : str
Specifies wither to 'include' or 'exclude' the identified
... | [
"Remove",
"fragments",
"from",
"the",
"calculated",
"filter"
] | python | test | 39.083333 |
alex-kostirin/pyatomac | atomac/ooldtp/__init__.py | https://github.com/alex-kostirin/pyatomac/blob/3f46f6feb4504315eec07abb18bb41be4d257aeb/atomac/ooldtp/__init__.py#L570-L583 | def deregisterevent(self, event_name):
"""
Remove callback of registered event
@param event_name: Event name in at-spi format.
@type event_name: string
@return: 1 if registration was successful, 0 if not.
@rtype: integer
"""
if event_name in self._pollE... | [
"def",
"deregisterevent",
"(",
"self",
",",
"event_name",
")",
":",
"if",
"event_name",
"in",
"self",
".",
"_pollEvents",
".",
"_callback",
":",
"del",
"self",
".",
"_pollEvents",
".",
"_callback",
"[",
"event_name",
"]",
"return",
"self",
".",
"_remote_dere... | Remove callback of registered event
@param event_name: Event name in at-spi format.
@type event_name: string
@return: 1 if registration was successful, 0 if not.
@rtype: integer | [
"Remove",
"callback",
"of",
"registered",
"event"
] | python | valid | 31 |
materialsproject/pymatgen | pymatgen/electronic_structure/boltztrap.py | https://github.com/materialsproject/pymatgen/blob/4ca558cf72f8d5f8a1f21dfdfc0181a971c186da/pymatgen/electronic_structure/boltztrap.py#L1696-L1707 | def get_carrier_concentration(self):
"""
gives the carrier concentration (in cm^-3)
Returns
a dictionary {temp:[]} with an array of carrier concentration
(in cm^-3) at each temperature
The array relates to each step of electron chemical potential
"""
... | [
"def",
"get_carrier_concentration",
"(",
"self",
")",
":",
"return",
"{",
"temp",
":",
"[",
"1e24",
"*",
"i",
"/",
"self",
".",
"vol",
"for",
"i",
"in",
"self",
".",
"_carrier_conc",
"[",
"temp",
"]",
"]",
"for",
"temp",
"in",
"self",
".",
"_carrier_... | gives the carrier concentration (in cm^-3)
Returns
a dictionary {temp:[]} with an array of carrier concentration
(in cm^-3) at each temperature
The array relates to each step of electron chemical potential | [
"gives",
"the",
"carrier",
"concentration",
"(",
"in",
"cm^",
"-",
"3",
")"
] | python | train | 36.25 |
fedora-infra/datanommer | datanommer.models/alembic/versions/1d4feffd78fe_add_historic_user_an.py | https://github.com/fedora-infra/datanommer/blob/4a20e216bb404b14f76c7065518fd081e989764d/datanommer.models/alembic/versions/1d4feffd78fe_add_historic_user_an.py#L48-L61 | def _page(q, chunk=1000):
""" Quick utility to page a query, 1000 items at a time.
We need this so we don't OOM (out of memory) ourselves loading the world.
"""
offset = 0
while True:
r = False
for elem in q.limit(chunk).offset(offset):
r = True
yield elem
... | [
"def",
"_page",
"(",
"q",
",",
"chunk",
"=",
"1000",
")",
":",
"offset",
"=",
"0",
"while",
"True",
":",
"r",
"=",
"False",
"for",
"elem",
"in",
"q",
".",
"limit",
"(",
"chunk",
")",
".",
"offset",
"(",
"offset",
")",
":",
"r",
"=",
"True",
"... | Quick utility to page a query, 1000 items at a time.
We need this so we don't OOM (out of memory) ourselves loading the world. | [
"Quick",
"utility",
"to",
"page",
"a",
"query",
"1000",
"items",
"at",
"a",
"time",
".",
"We",
"need",
"this",
"so",
"we",
"don",
"t",
"OOM",
"(",
"out",
"of",
"memory",
")",
"ourselves",
"loading",
"the",
"world",
"."
] | python | train | 26 |
angr/angr | angr/state_plugins/symbolic_memory.py | https://github.com/angr/angr/blob/4e2f97d56af5419ee73bdb30482c8dd8ff5f3e40/angr/state_plugins/symbolic_memory.py#L1234-L1247 | def permissions(self, addr, permissions=None):
"""
Retrieve the permissions of the page at address `addr`.
:param addr: address to get the page permissions
:param permissions: Integer or BVV to optionally set page permissions to
:return: AST representing the pe... | [
"def",
"permissions",
"(",
"self",
",",
"addr",
",",
"permissions",
"=",
"None",
")",
":",
"out",
"=",
"self",
".",
"mem",
".",
"permissions",
"(",
"addr",
",",
"permissions",
")",
"# if unicorn is in play and we've marked a page writable, it must be uncached",
"if"... | Retrieve the permissions of the page at address `addr`.
:param addr: address to get the page permissions
:param permissions: Integer or BVV to optionally set page permissions to
:return: AST representing the permissions on the page | [
"Retrieve",
"the",
"permissions",
"of",
"the",
"page",
"at",
"address",
"addr",
"."
] | python | train | 49.285714 |
learningequality/ricecooker | ricecooker/managers/tree.py | https://github.com/learningequality/ricecooker/blob/2f0385282500cb77ef2894646c6f9ce11bd7a853/ricecooker/managers/tree.py#L281-L300 | def commit_channel(self, channel_id):
""" commit_channel: commits channel to Kolibri Studio
Args:
channel_id (str): channel's id on Kolibri Studio
Returns: channel id and link to uploadedchannel
"""
payload = {
"channel_id":channel_id,
... | [
"def",
"commit_channel",
"(",
"self",
",",
"channel_id",
")",
":",
"payload",
"=",
"{",
"\"channel_id\"",
":",
"channel_id",
",",
"\"stage\"",
":",
"config",
".",
"STAGE",
",",
"}",
"response",
"=",
"config",
".",
"SESSION",
".",
"post",
"(",
"config",
"... | commit_channel: commits channel to Kolibri Studio
Args:
channel_id (str): channel's id on Kolibri Studio
Returns: channel id and link to uploadedchannel | [
"commit_channel",
":",
"commits",
"channel",
"to",
"Kolibri",
"Studio",
"Args",
":",
"channel_id",
"(",
"str",
")",
":",
"channel",
"s",
"id",
"on",
"Kolibri",
"Studio",
"Returns",
":",
"channel",
"id",
"and",
"link",
"to",
"uploadedchannel"
] | python | train | 50.2 |
cs01/gdbgui | gdbgui/backend.py | https://github.com/cs01/gdbgui/blob/5367f87554f8f7c671d1f4596c133bf1303154f0/gdbgui/backend.py#L369-L382 | def send_msg_to_clients(client_ids, msg, error=False):
"""Send message to all clients"""
if error:
stream = "stderr"
else:
stream = "stdout"
response = [{"message": None, "type": "console", "payload": msg, "stream": stream}]
for client_id in client_ids:
logger.info("emiting... | [
"def",
"send_msg_to_clients",
"(",
"client_ids",
",",
"msg",
",",
"error",
"=",
"False",
")",
":",
"if",
"error",
":",
"stream",
"=",
"\"stderr\"",
"else",
":",
"stream",
"=",
"\"stdout\"",
"response",
"=",
"[",
"{",
"\"message\"",
":",
"None",
",",
"\"t... | Send message to all clients | [
"Send",
"message",
"to",
"all",
"clients"
] | python | train | 33.285714 |
senaite/senaite.core | bika/lims/content/abstractanalysis.py | https://github.com/senaite/senaite.core/blob/7602ce2ea2f9e81eb34e20ce17b98a3e70713f85/bika/lims/content/abstractanalysis.py#L748-L767 | def getAllowedInstruments(self):
"""Returns the allowed instruments for this analysis, either if the
instrument was assigned directly (by using "Allows instrument entry of
results") or indirectly via Method (by using "Allows manual entry of
results") in Analysis Service edit view.
... | [
"def",
"getAllowedInstruments",
"(",
"self",
")",
":",
"service",
"=",
"self",
".",
"getAnalysisService",
"(",
")",
"if",
"not",
"service",
":",
"return",
"[",
"]",
"instruments",
"=",
"[",
"]",
"if",
"self",
".",
"getInstrumentEntryOfResults",
"(",
")",
"... | Returns the allowed instruments for this analysis, either if the
instrument was assigned directly (by using "Allows instrument entry of
results") or indirectly via Method (by using "Allows manual entry of
results") in Analysis Service edit view.
:return: A list of instruments allowed for... | [
"Returns",
"the",
"allowed",
"instruments",
"for",
"this",
"analysis",
"either",
"if",
"the",
"instrument",
"was",
"assigned",
"directly",
"(",
"by",
"using",
"Allows",
"instrument",
"entry",
"of",
"results",
")",
"or",
"indirectly",
"via",
"Method",
"(",
"by"... | python | train | 40.3 |
jpscaletti/solution | solution/fields/color.py | https://github.com/jpscaletti/solution/blob/eabafd8e695bbb0209242e002dbcc05ffb327f43/solution/fields/color.py#L74-L87 | def normalize_rgb(r, g, b, a):
"""Transform a rgb[a] color to #hex[a].
"""
r = int(r, 10)
g = int(g, 10)
b = int(b, 10)
if a:
a = float(a) * 256
if r > 255 or g > 255 or b > 255 or (a and a > 255):
return None
color = '#%02x%02x%02x' % (r, g, b)
if a:
color +=... | [
"def",
"normalize_rgb",
"(",
"r",
",",
"g",
",",
"b",
",",
"a",
")",
":",
"r",
"=",
"int",
"(",
"r",
",",
"10",
")",
"g",
"=",
"int",
"(",
"g",
",",
"10",
")",
"b",
"=",
"int",
"(",
"b",
",",
"10",
")",
"if",
"a",
":",
"a",
"=",
"floa... | Transform a rgb[a] color to #hex[a]. | [
"Transform",
"a",
"rgb",
"[",
"a",
"]",
"color",
"to",
"#hex",
"[",
"a",
"]",
"."
] | python | train | 24.285714 |
horazont/aioxmpp | aioxmpp/pep/service.py | https://github.com/horazont/aioxmpp/blob/22a68e5e1d23f2a4dee470092adbd4672f9ef061/aioxmpp/pep/service.py#L326-L338 | def close(self):
"""
Unclaim the PEP node and unregister the registered features.
It is not necessary to call close if this claim is managed by
:class:`~aioxmpp.pep.register_pep_node`.
"""
if self._closed:
return
self._closed = True
self._pep... | [
"def",
"close",
"(",
"self",
")",
":",
"if",
"self",
".",
"_closed",
":",
"return",
"self",
".",
"_closed",
"=",
"True",
"self",
".",
"_pep_service",
".",
"_unclaim",
"(",
"self",
".",
"node_namespace",
")",
"self",
".",
"_unregister",
"(",
")"
] | Unclaim the PEP node and unregister the registered features.
It is not necessary to call close if this claim is managed by
:class:`~aioxmpp.pep.register_pep_node`. | [
"Unclaim",
"the",
"PEP",
"node",
"and",
"unregister",
"the",
"registered",
"features",
"."
] | python | train | 28.692308 |
bitesofcode/projexui | projexui/widgets/xloaderwidget.py | https://github.com/bitesofcode/projexui/blob/f18a73bec84df90b034ca69b9deea118dbedfc4d/projexui/widgets/xloaderwidget.py#L202-L207 | def incrementSub(self, amount=1):
"""
Increments the sub-progress bar by amount.
"""
self._subProgressBar.setValue(self.subValue() + amount)
QApplication.instance().processEvents() | [
"def",
"incrementSub",
"(",
"self",
",",
"amount",
"=",
"1",
")",
":",
"self",
".",
"_subProgressBar",
".",
"setValue",
"(",
"self",
".",
"subValue",
"(",
")",
"+",
"amount",
")",
"QApplication",
".",
"instance",
"(",
")",
".",
"processEvents",
"(",
")... | Increments the sub-progress bar by amount. | [
"Increments",
"the",
"sub",
"-",
"progress",
"bar",
"by",
"amount",
"."
] | python | train | 36 |
erget/StereoVision | stereovision/stereo_cameras.py | https://github.com/erget/StereoVision/blob/1adff45e291362f52188e0fd0211265845a4461a/stereovision/stereo_cameras.py#L79-L88 | def get_frames_singleimage(self):
"""
Get current left and right frames from a single image,
by splitting the image in half.
"""
frame = self.captures[0].read()[1]
height, width, colors = frame.shape
left_frame = frame[:, :width/2, :]
right_frame = frame[:... | [
"def",
"get_frames_singleimage",
"(",
"self",
")",
":",
"frame",
"=",
"self",
".",
"captures",
"[",
"0",
"]",
".",
"read",
"(",
")",
"[",
"1",
"]",
"height",
",",
"width",
",",
"colors",
"=",
"frame",
".",
"shape",
"left_frame",
"=",
"frame",
"[",
... | Get current left and right frames from a single image,
by splitting the image in half. | [
"Get",
"current",
"left",
"and",
"right",
"frames",
"from",
"a",
"single",
"image",
"by",
"splitting",
"the",
"image",
"in",
"half",
"."
] | python | train | 36.6 |
vtraag/leidenalg | src/VertexPartition.py | https://github.com/vtraag/leidenalg/blob/a9e15116973a81048edf02ef7cf800d54debe1cc/src/VertexPartition.py#L376-L384 | def weight_from_comm(self, v, comm):
""" The total number of edges (or sum of weights) to node ``v`` from
community ``comm``.
See Also
--------
:func:`~VertexPartition.MutableVertexPartition.weight_to_comm`
"""
return _c_leiden._MutableVertexPartition_weight_from_comm(self._partition, v, co... | [
"def",
"weight_from_comm",
"(",
"self",
",",
"v",
",",
"comm",
")",
":",
"return",
"_c_leiden",
".",
"_MutableVertexPartition_weight_from_comm",
"(",
"self",
".",
"_partition",
",",
"v",
",",
"comm",
")"
] | The total number of edges (or sum of weights) to node ``v`` from
community ``comm``.
See Also
--------
:func:`~VertexPartition.MutableVertexPartition.weight_to_comm` | [
"The",
"total",
"number",
"of",
"edges",
"(",
"or",
"sum",
"of",
"weights",
")",
"to",
"node",
"v",
"from",
"community",
"comm",
"."
] | python | train | 35 |
kolypto/py-good | good/schema/compiler.py | https://github.com/kolypto/py-good/blob/192ef19e79f6fd95c1cbd7c378a3074c7ad7a6d4/good/schema/compiler.py#L331-L338 | def _compile_schema(self, schema):
""" Compile another schema """
assert self.matcher == schema.matcher
self.name = schema.name
self.compiled_type = schema.compiled_type
return schema.compiled | [
"def",
"_compile_schema",
"(",
"self",
",",
"schema",
")",
":",
"assert",
"self",
".",
"matcher",
"==",
"schema",
".",
"matcher",
"self",
".",
"name",
"=",
"schema",
".",
"name",
"self",
".",
"compiled_type",
"=",
"schema",
".",
"compiled_type",
"return",
... | Compile another schema | [
"Compile",
"another",
"schema"
] | python | train | 28.375 |
automl/HpBandSter | hpbandster/core/base_iteration.py | https://github.com/automl/HpBandSter/blob/841db4b827f342e5eb7f725723ea6461ac52d45a/hpbandster/core/base_iteration.py#L105-L139 | def register_result(self, job, skip_sanity_checks=False):
"""
function to register the result of a job
This function is called from HB_master, don't call this from
your script.
"""
if self.is_finished:
raise RuntimeError("This HB iteration is finished, you can't register more results!")
config_id = ... | [
"def",
"register_result",
"(",
"self",
",",
"job",
",",
"skip_sanity_checks",
"=",
"False",
")",
":",
"if",
"self",
".",
"is_finished",
":",
"raise",
"RuntimeError",
"(",
"\"This HB iteration is finished, you can't register more results!\"",
")",
"config_id",
"=",
"jo... | function to register the result of a job
This function is called from HB_master, don't call this from
your script. | [
"function",
"to",
"register",
"the",
"result",
"of",
"a",
"job"
] | python | train | 27.885714 |
erdc/RAPIDpy | RAPIDpy/rapid.py | https://github.com/erdc/RAPIDpy/blob/50e14e130554b254a00ff23b226cd7e4c6cfe91a/RAPIDpy/rapid.py#L632-L800 | def run(self, rapid_namelist_file=""):
"""
Run RAPID program and generate file based on inputs
This will generate your rapid_namelist file and run RAPID from wherever
you call this script (your working directory).
Parameters
----------
rapid_namelist_file: str, o... | [
"def",
"run",
"(",
"self",
",",
"rapid_namelist_file",
"=",
"\"\"",
")",
":",
"if",
"not",
"self",
".",
"_rapid_executable_location",
":",
"log",
"(",
"\"Missing rapid_executable_location. \"",
"\"Please set before running this function ...\"",
",",
"\"ERROR\"",
")",
"t... | Run RAPID program and generate file based on inputs
This will generate your rapid_namelist file and run RAPID from wherever
you call this script (your working directory).
Parameters
----------
rapid_namelist_file: str, optional
Path of namelist file to use in the sim... | [
"Run",
"RAPID",
"program",
"and",
"generate",
"file",
"based",
"on",
"inputs",
"This",
"will",
"generate",
"your",
"rapid_namelist",
"file",
"and",
"run",
"RAPID",
"from",
"wherever",
"you",
"call",
"this",
"script",
"(",
"your",
"working",
"directory",
")",
... | python | train | 36.686391 |
inveniosoftware/invenio-stats | invenio_stats/ext.py | https://github.com/inveniosoftware/invenio-stats/blob/d877ae5462084abb4a28a20f1ebb3d636769c1bc/invenio_stats/ext.py#L189-L192 | def publish(self, event_type, events):
"""Publish events."""
assert event_type in self.events
current_queues.queues['stats-{}'.format(event_type)].publish(events) | [
"def",
"publish",
"(",
"self",
",",
"event_type",
",",
"events",
")",
":",
"assert",
"event_type",
"in",
"self",
".",
"events",
"current_queues",
".",
"queues",
"[",
"'stats-{}'",
".",
"format",
"(",
"event_type",
")",
"]",
".",
"publish",
"(",
"events",
... | Publish events. | [
"Publish",
"events",
"."
] | python | valid | 45.75 |
apple/turicreate | src/external/coremltools_wrap/coremltools/deps/protobuf/python/google/protobuf/internal/decoder.py | https://github.com/apple/turicreate/blob/74514c3f99e25b46f22c6e02977fe3da69221c2e/src/external/coremltools_wrap/coremltools/deps/protobuf/python/google/protobuf/internal/decoder.py#L794-L802 | def _SkipGroup(buffer, pos, end):
"""Skip sub-group. Returns the new position."""
while 1:
(tag_bytes, pos) = ReadTag(buffer, pos)
new_pos = SkipField(buffer, pos, end, tag_bytes)
if new_pos == -1:
return pos
pos = new_pos | [
"def",
"_SkipGroup",
"(",
"buffer",
",",
"pos",
",",
"end",
")",
":",
"while",
"1",
":",
"(",
"tag_bytes",
",",
"pos",
")",
"=",
"ReadTag",
"(",
"buffer",
",",
"pos",
")",
"new_pos",
"=",
"SkipField",
"(",
"buffer",
",",
"pos",
",",
"end",
",",
"... | Skip sub-group. Returns the new position. | [
"Skip",
"sub",
"-",
"group",
".",
"Returns",
"the",
"new",
"position",
"."
] | python | train | 26.888889 |
moremoban/moban | setup.py | https://github.com/moremoban/moban/blob/5d1674ae461b065a9a54fe89c445cbf6d3cd63c0/setup.py#L157-L163 | def read(afile):
"""Read a file into setup"""
the_relative_file = os.path.join(HERE, afile)
with codecs.open(the_relative_file, 'r', 'utf-8') as opened_file:
content = filter_out_test_code(opened_file)
content = "".join(list(content))
return content | [
"def",
"read",
"(",
"afile",
")",
":",
"the_relative_file",
"=",
"os",
".",
"path",
".",
"join",
"(",
"HERE",
",",
"afile",
")",
"with",
"codecs",
".",
"open",
"(",
"the_relative_file",
",",
"'r'",
",",
"'utf-8'",
")",
"as",
"opened_file",
":",
"conten... | Read a file into setup | [
"Read",
"a",
"file",
"into",
"setup"
] | python | train | 39.857143 |
openstack/proliantutils | proliantutils/ilo/ris.py | https://github.com/openstack/proliantutils/blob/86ef3b47b4eca97c221577e3570b0240d6a25f22/proliantutils/ilo/ris.py#L199-L213 | def _get_host_details(self):
"""Get the system details."""
# Assuming only one system present as part of collection,
# as we are dealing with iLO's here.
status, headers, system = self._rest_get('/rest/v1/Systems/1')
if status < 300:
stype = self._get_type(system)
... | [
"def",
"_get_host_details",
"(",
"self",
")",
":",
"# Assuming only one system present as part of collection,",
"# as we are dealing with iLO's here.",
"status",
",",
"headers",
",",
"system",
"=",
"self",
".",
"_rest_get",
"(",
"'/rest/v1/Systems/1'",
")",
"if",
"status",
... | Get the system details. | [
"Get",
"the",
"system",
"details",
"."
] | python | train | 40.733333 |
picklepete/pyicloud | pyicloud/base.py | https://github.com/picklepete/pyicloud/blob/9bb6d750662ce24c8febc94807ddbdcdf3cadaa2/pyicloud/base.py#L195-L230 | def authenticate(self):
"""
Handles authentication, and persists the X-APPLE-WEB-KB cookie so that
subsequent logins will not cause additional e-mails from Apple.
"""
logger.info("Authenticating as %s", self.user['apple_id'])
data = dict(self.user)
# We authent... | [
"def",
"authenticate",
"(",
"self",
")",
":",
"logger",
".",
"info",
"(",
"\"Authenticating as %s\"",
",",
"self",
".",
"user",
"[",
"'apple_id'",
"]",
")",
"data",
"=",
"dict",
"(",
"self",
".",
"user",
")",
"# We authenticate every time, so \"remember me\" is ... | Handles authentication, and persists the X-APPLE-WEB-KB cookie so that
subsequent logins will not cause additional e-mails from Apple. | [
"Handles",
"authentication",
"and",
"persists",
"the",
"X",
"-",
"APPLE",
"-",
"WEB",
"-",
"KB",
"cookie",
"so",
"that",
"subsequent",
"logins",
"will",
"not",
"cause",
"additional",
"e",
"-",
"mails",
"from",
"Apple",
"."
] | python | train | 33.138889 |
tommyod/streprogen | streprogen/program.py | https://github.com/tommyod/streprogen/blob/21b903618e8b2d398bceb394d18d7c74ca984def/streprogen/program.py#L715-L732 | def to_html(self, table_width=5):
"""Write the program information to HTML code, which can be saved,
printed and brought to the gym.
Parameters
----------
table_width
The table with of the HTML code.
Returns
-------
string
HTML co... | [
"def",
"to_html",
"(",
"self",
",",
"table_width",
"=",
"5",
")",
":",
"env",
"=",
"self",
".",
"jinja2_environment",
"template",
"=",
"env",
".",
"get_template",
"(",
"self",
".",
"TEMPLATE_NAMES",
"[",
"'html'",
"]",
")",
"return",
"template",
".",
"re... | Write the program information to HTML code, which can be saved,
printed and brought to the gym.
Parameters
----------
table_width
The table with of the HTML code.
Returns
-------
string
HTML code. | [
"Write",
"the",
"program",
"information",
"to",
"HTML",
"code",
"which",
"can",
"be",
"saved",
"printed",
"and",
"brought",
"to",
"the",
"gym",
"."
] | python | train | 27.333333 |
dbcli/athenacli | athenacli/packages/special/iocommands.py | https://github.com/dbcli/athenacli/blob/bcab59e4953145866430083e902ed4d042d4ebba/athenacli/packages/special/iocommands.py#L123-L154 | def open_external_editor(filename=None, sql=None):
"""Open external editor, wait for the user to type in their query, return
the query.
:return: list with one tuple, query as first element.
"""
message = None
filename = filename.strip().split(' ', 1)[0] if filename else None
sql = sql or '... | [
"def",
"open_external_editor",
"(",
"filename",
"=",
"None",
",",
"sql",
"=",
"None",
")",
":",
"message",
"=",
"None",
"filename",
"=",
"filename",
".",
"strip",
"(",
")",
".",
"split",
"(",
"' '",
",",
"1",
")",
"[",
"0",
"]",
"if",
"filename",
"... | Open external editor, wait for the user to type in their query, return
the query.
:return: list with one tuple, query as first element. | [
"Open",
"external",
"editor",
"wait",
"for",
"the",
"user",
"to",
"type",
"in",
"their",
"query",
"return",
"the",
"query",
".",
":",
"return",
":",
"list",
"with",
"one",
"tuple",
"query",
"as",
"first",
"element",
"."
] | python | train | 31.625 |
Julius2342/pyvlx | old_api/pyvlx/devices.py | https://github.com/Julius2342/pyvlx/blob/ee78e1324bcb1be5b8d1a9d05ab5496b72eae848/old_api/pyvlx/devices.py#L79-L82 | def load_blind(self, item):
"""Load blind from JSON."""
blind = Blind.from_config(self.pyvlx, item)
self.add(blind) | [
"def",
"load_blind",
"(",
"self",
",",
"item",
")",
":",
"blind",
"=",
"Blind",
".",
"from_config",
"(",
"self",
".",
"pyvlx",
",",
"item",
")",
"self",
".",
"add",
"(",
"blind",
")"
] | Load blind from JSON. | [
"Load",
"blind",
"from",
"JSON",
"."
] | python | train | 34 |
davidfokkema/artist | artist/multi_plot.py | https://github.com/davidfokkema/artist/blob/26ae7987522622710f2910980770c50012fda47d/artist/multi_plot.py#L559-L576 | def set_scalebar_for_all(self, row_column_list=None,
location='lower right'):
"""Show marker area scale for subplots.
:param row_column_list: a list containing (row, column) tuples to
specify the subplots, or None to indicate *all* subplots.
:param locat... | [
"def",
"set_scalebar_for_all",
"(",
"self",
",",
"row_column_list",
"=",
"None",
",",
"location",
"=",
"'lower right'",
")",
":",
"if",
"row_column_list",
"is",
"None",
":",
"for",
"subplot",
"in",
"self",
".",
"subplots",
":",
"subplot",
".",
"set_scalebar",
... | Show marker area scale for subplots.
:param row_column_list: a list containing (row, column) tuples to
specify the subplots, or None to indicate *all* subplots.
:param location: the location of the label inside the plot. May
be one of 'center', 'upper right', 'lower right', 'up... | [
"Show",
"marker",
"area",
"scale",
"for",
"subplots",
"."
] | python | train | 42.388889 |
spacetelescope/drizzlepac | drizzlepac/util.py | https://github.com/spacetelescope/drizzlepac/blob/15bec3c929a6a869d9e71b9398ced43ede0620f1/drizzlepac/util.py#L329-L343 | def endStep(self,key):
"""
Record the end time for the step.
If key==None, simply record ptime as end time for class to represent
the overall runtime since the initialization of the class.
"""
ptime = _ptime()
if key is not None:
self.steps[key]['end'... | [
"def",
"endStep",
"(",
"self",
",",
"key",
")",
":",
"ptime",
"=",
"_ptime",
"(",
")",
"if",
"key",
"is",
"not",
"None",
":",
"self",
".",
"steps",
"[",
"key",
"]",
"[",
"'end'",
"]",
"=",
"ptime",
"self",
".",
"steps",
"[",
"key",
"]",
"[",
... | Record the end time for the step.
If key==None, simply record ptime as end time for class to represent
the overall runtime since the initialization of the class. | [
"Record",
"the",
"end",
"time",
"for",
"the",
"step",
"."
] | python | train | 33.8 |
iotaledger/iota.lib.py | iota/api.py | https://github.com/iotaledger/iota.lib.py/blob/97cdd1e241498446b46157b79b2a1ea2ec6d387a/iota/api.py#L732-L789 | def get_new_addresses(
self,
index=0,
count=1,
security_level=AddressGenerator.DEFAULT_SECURITY_LEVEL,
checksum=False,
):
# type: (int, Optional[int], int, bool) -> dict
"""
Generates one or more new addresses from the seed.
... | [
"def",
"get_new_addresses",
"(",
"self",
",",
"index",
"=",
"0",
",",
"count",
"=",
"1",
",",
"security_level",
"=",
"AddressGenerator",
".",
"DEFAULT_SECURITY_LEVEL",
",",
"checksum",
"=",
"False",
",",
")",
":",
"# type: (int, Optional[int], int, bool) -> dict",
... | Generates one or more new addresses from the seed.
:param index:
The key index of the first new address to generate (must be
>= 1).
:param count:
Number of addresses to generate (must be >= 1).
.. tip::
This is more efficient than callin... | [
"Generates",
"one",
"or",
"more",
"new",
"addresses",
"from",
"the",
"seed",
"."
] | python | test | 29.758621 |
tkem/uritools | uritools/defrag.py | https://github.com/tkem/uritools/blob/e77ba4acd937b68da9850138563debd4c925ef9f/uritools/defrag.py#L33-L41 | def uridefrag(uristring):
"""Remove an existing fragment component from a URI reference string.
"""
if isinstance(uristring, bytes):
parts = uristring.partition(b'#')
else:
parts = uristring.partition(u'#')
return DefragResult(parts[0], parts[2] if parts[1] else None) | [
"def",
"uridefrag",
"(",
"uristring",
")",
":",
"if",
"isinstance",
"(",
"uristring",
",",
"bytes",
")",
":",
"parts",
"=",
"uristring",
".",
"partition",
"(",
"b'#'",
")",
"else",
":",
"parts",
"=",
"uristring",
".",
"partition",
"(",
"u'#'",
")",
"re... | Remove an existing fragment component from a URI reference string. | [
"Remove",
"an",
"existing",
"fragment",
"component",
"from",
"a",
"URI",
"reference",
"string",
"."
] | python | train | 33 |
project-rig/rig | rig/place_and_route/route/ner.py | https://github.com/project-rig/rig/blob/3a3e053d3214899b6d68758685835de0afd5542b/rig/place_and_route/route/ner.py#L517-L577 | def route(vertices_resources, nets, machine, constraints, placements,
allocations={}, core_resource=Cores, radius=20):
"""Routing algorithm based on Neighbour Exploring Routing (NER).
Algorithm refrence: J. Navaridas et al. SpiNNaker: Enhanced multicast
routing, Parallel Computing (2014).
htt... | [
"def",
"route",
"(",
"vertices_resources",
",",
"nets",
",",
"machine",
",",
"constraints",
",",
"placements",
",",
"allocations",
"=",
"{",
"}",
",",
"core_resource",
"=",
"Cores",
",",
"radius",
"=",
"20",
")",
":",
"wrap_around",
"=",
"machine",
".",
... | Routing algorithm based on Neighbour Exploring Routing (NER).
Algorithm refrence: J. Navaridas et al. SpiNNaker: Enhanced multicast
routing, Parallel Computing (2014).
http://dx.doi.org/10.1016/j.parco.2015.01.002
This algorithm attempts to use NER to generate routing trees for all nets
and routes... | [
"Routing",
"algorithm",
"based",
"on",
"Neighbour",
"Exploring",
"Routing",
"(",
"NER",
")",
"."
] | python | train | 44.442623 |
voxpupuli/pypuppetdb | pypuppetdb/types.py | https://github.com/voxpupuli/pypuppetdb/blob/cedeecf48014b4ad5b8e2513ca8230c814f45603/pypuppetdb/types.py#L454-L459 | def facts(self, **kwargs):
"""Get all facts of this node. Additional arguments may also be
specified that will be passed to the query function.
"""
return self.__api.facts(query=EqualsOperator("certname", self.name),
**kwargs) | [
"def",
"facts",
"(",
"self",
",",
"*",
"*",
"kwargs",
")",
":",
"return",
"self",
".",
"__api",
".",
"facts",
"(",
"query",
"=",
"EqualsOperator",
"(",
"\"certname\"",
",",
"self",
".",
"name",
")",
",",
"*",
"*",
"kwargs",
")"
] | Get all facts of this node. Additional arguments may also be
specified that will be passed to the query function. | [
"Get",
"all",
"facts",
"of",
"this",
"node",
".",
"Additional",
"arguments",
"may",
"also",
"be",
"specified",
"that",
"will",
"be",
"passed",
"to",
"the",
"query",
"function",
"."
] | python | valid | 47.5 |
Knio/dominate | dominate/util.py | https://github.com/Knio/dominate/blob/1eb88f9fd797658eef83568a548e2ef9b546807d/dominate/util.py#L44-L51 | def system(cmd, data=None):
'''
pipes the output of a program
'''
import subprocess
s = subprocess.Popen(cmd, shell=True, stdout=subprocess.PIPE, stdin=subprocess.PIPE)
out, err = s.communicate(data)
return out.decode('utf8') | [
"def",
"system",
"(",
"cmd",
",",
"data",
"=",
"None",
")",
":",
"import",
"subprocess",
"s",
"=",
"subprocess",
".",
"Popen",
"(",
"cmd",
",",
"shell",
"=",
"True",
",",
"stdout",
"=",
"subprocess",
".",
"PIPE",
",",
"stdin",
"=",
"subprocess",
".",... | pipes the output of a program | [
"pipes",
"the",
"output",
"of",
"a",
"program"
] | python | valid | 29 |
quantopian/zipline | zipline/data/history_loader.py | https://github.com/quantopian/zipline/blob/77ad15e6dc4c1cbcdc133653bac8a63fc704f7fe/zipline/data/history_loader.py#L48-L63 | def load_pricing_adjustments(self, columns, dts, assets):
"""
Returns
-------
adjustments : list[dict[int -> Adjustment]]
A list, where each element corresponds to the `columns`, of
mappings from index to adjustment objects to apply at that index.
"""
... | [
"def",
"load_pricing_adjustments",
"(",
"self",
",",
"columns",
",",
"dts",
",",
"assets",
")",
":",
"out",
"=",
"[",
"None",
"]",
"*",
"len",
"(",
"columns",
")",
"for",
"i",
",",
"column",
"in",
"enumerate",
"(",
"columns",
")",
":",
"adjs",
"=",
... | Returns
-------
adjustments : list[dict[int -> Adjustment]]
A list, where each element corresponds to the `columns`, of
mappings from index to adjustment objects to apply at that index. | [
"Returns",
"-------",
"adjustments",
":",
"list",
"[",
"dict",
"[",
"int",
"-",
">",
"Adjustment",
"]]",
"A",
"list",
"where",
"each",
"element",
"corresponds",
"to",
"the",
"columns",
"of",
"mappings",
"from",
"index",
"to",
"adjustment",
"objects",
"to",
... | python | train | 36.375 |
Clinical-Genomics/scout | scout/adapter/mongo/variant.py | https://github.com/Clinical-Genomics/scout/blob/90a551e2e1653a319e654c2405c2866f93d0ebb9/scout/adapter/mongo/variant.py#L525-L588 | def get_region_vcf(self, case_obj, chrom=None, start=None, end=None,
gene_obj=None, variant_type='clinical', category='snv',
rank_threshold=None):
"""Produce a reduced vcf with variants from the specified coordinates
This is used for the alignment viewer.... | [
"def",
"get_region_vcf",
"(",
"self",
",",
"case_obj",
",",
"chrom",
"=",
"None",
",",
"start",
"=",
"None",
",",
"end",
"=",
"None",
",",
"gene_obj",
"=",
"None",
",",
"variant_type",
"=",
"'clinical'",
",",
"category",
"=",
"'snv'",
",",
"rank_threshol... | Produce a reduced vcf with variants from the specified coordinates
This is used for the alignment viewer.
Args:
case_obj(dict): A case from the scout database
variant_type(str): 'clinical' or 'research'. Default: 'clinical'
category(str): 'snv' or 'sv'. Default: '... | [
"Produce",
"a",
"reduced",
"vcf",
"with",
"variants",
"from",
"the",
"specified",
"coordinates",
"This",
"is",
"used",
"for",
"the",
"alignment",
"viewer",
"."
] | python | test | 38.5625 |
hootnot/oanda-api-v20 | oandapyV20/oandapyV20.py | https://github.com/hootnot/oanda-api-v20/blob/f300734238a6a3958e07e60456155fbc53748aa8/oandapyV20/oandapyV20.py#L262-L324 | def request(self, endpoint):
"""Perform a request for the APIRequest instance 'endpoint'.
Parameters
----------
endpoint : APIRequest
The endpoint parameter contains an instance of an APIRequest
containing the endpoint, method and optionally other parameters
... | [
"def",
"request",
"(",
"self",
",",
"endpoint",
")",
":",
"method",
"=",
"endpoint",
".",
"method",
"method",
"=",
"method",
".",
"lower",
"(",
")",
"params",
"=",
"None",
"try",
":",
"params",
"=",
"getattr",
"(",
"endpoint",
",",
"\"params\"",
")",
... | Perform a request for the APIRequest instance 'endpoint'.
Parameters
----------
endpoint : APIRequest
The endpoint parameter contains an instance of an APIRequest
containing the endpoint, method and optionally other parameters
or body data.
Raises
... | [
"Perform",
"a",
"request",
"for",
"the",
"APIRequest",
"instance",
"endpoint",
"."
] | python | train | 33.68254 |
csvsoundsystem/pytreasuryio | treasuryio/tweetbot.py | https://github.com/csvsoundsystem/pytreasuryio/blob/728caf815d16cd2f3548d8b67c84313de76f9be7/treasuryio/tweetbot.py#L16-L41 | def tweet(tweet_text_func):
'''
A decorator to make a function Tweet
Parameters
- `tweet_text_func` is a function that takes no parameters and returns a tweetable string
For example::
@tweet
def total_deposits_this_week():
# ...
@tweet
def not_an_inte... | [
"def",
"tweet",
"(",
"tweet_text_func",
")",
":",
"def",
"tweet_func",
"(",
")",
":",
"api",
"=",
"_connect_to_twitter",
"(",
")",
"tweet",
"=",
"tweet_text_func",
"(",
")",
"print",
"\"Tweeting: %s\"",
"%",
"tweet",
"api",
".",
"update_status",
"(",
"tweet"... | A decorator to make a function Tweet
Parameters
- `tweet_text_func` is a function that takes no parameters and returns a tweetable string
For example::
@tweet
def total_deposits_this_week():
# ...
@tweet
def not_an_interesting_tweet():
return 'Thi... | [
"A",
"decorator",
"to",
"make",
"a",
"function",
"Tweet"
] | python | train | 22.192308 |
python-openxml/python-docx | docx/oxml/text/run.py | https://github.com/python-openxml/python-docx/blob/6756f6cd145511d3eb6d1d188beea391b1ddfd53/docx/oxml/text/run.py#L145-L160 | def add_char(self, char):
"""
Process the next character of input through the translation finite
state maching (FSM). There are two possible states, buffer pending
and not pending, but those are hidden behind the ``.flush()`` method
which must be called at the end of text to ensu... | [
"def",
"add_char",
"(",
"self",
",",
"char",
")",
":",
"if",
"char",
"==",
"'\\t'",
":",
"self",
".",
"flush",
"(",
")",
"self",
".",
"_r",
".",
"add_tab",
"(",
")",
"elif",
"char",
"in",
"'\\r\\n'",
":",
"self",
".",
"flush",
"(",
")",
"self",
... | Process the next character of input through the translation finite
state maching (FSM). There are two possible states, buffer pending
and not pending, but those are hidden behind the ``.flush()`` method
which must be called at the end of text to ensure any pending
``<w:t>`` element is wr... | [
"Process",
"the",
"next",
"character",
"of",
"input",
"through",
"the",
"translation",
"finite",
"state",
"maching",
"(",
"FSM",
")",
".",
"There",
"are",
"two",
"possible",
"states",
"buffer",
"pending",
"and",
"not",
"pending",
"but",
"those",
"are",
"hidd... | python | train | 36.3125 |
markovmodel/PyEMMA | pyemma/coordinates/api.py | https://github.com/markovmodel/PyEMMA/blob/5c3124398217de05ba5ce9c8fb01519222481ab8/pyemma/coordinates/api.py#L439-L524 | def pipeline(stages, run=True, stride=1, chunksize=None):
r""" Data analysis pipeline.
Constructs a data analysis :class:`Pipeline <pyemma.coordinates.pipelines.Pipeline>` and parametrizes it
(unless prevented).
If this function takes too long, consider loading data in memory.
Alternatively if the ... | [
"def",
"pipeline",
"(",
"stages",
",",
"run",
"=",
"True",
",",
"stride",
"=",
"1",
",",
"chunksize",
"=",
"None",
")",
":",
"from",
"pyemma",
".",
"coordinates",
".",
"pipelines",
"import",
"Pipeline",
"if",
"not",
"isinstance",
"(",
"stages",
",",
"l... | r""" Data analysis pipeline.
Constructs a data analysis :class:`Pipeline <pyemma.coordinates.pipelines.Pipeline>` and parametrizes it
(unless prevented).
If this function takes too long, consider loading data in memory.
Alternatively if the data is to large to be loaded into memory make use
of the ... | [
"r",
"Data",
"analysis",
"pipeline",
"."
] | python | train | 38.418605 |
PMBio/limix-backup | limix/varDecomp/varianceDecomposition.py | https://github.com/PMBio/limix-backup/blob/1e201fdb5c694d0d5506f207f3de65d8ef66146c/limix/varDecomp/varianceDecomposition.py#L385-L395 | def _det_inference(self):
"""
Internal method for determining the inference method
"""
# 2 random effects with complete design -> gp2KronSum
# TODO: add check for low-rankness, use GP3KronSumLR and GP2KronSumLR when possible
if (self.n_randEffs==2) and (~sp.isnan(self.Y).... | [
"def",
"_det_inference",
"(",
"self",
")",
":",
"# 2 random effects with complete design -> gp2KronSum",
"# TODO: add check for low-rankness, use GP3KronSumLR and GP2KronSumLR when possible",
"if",
"(",
"self",
".",
"n_randEffs",
"==",
"2",
")",
"and",
"(",
"~",
"sp",
".",
... | Internal method for determining the inference method | [
"Internal",
"method",
"for",
"determining",
"the",
"inference",
"method"
] | python | train | 36.454545 |
rjdkmr/do_x3dna | dnaMD/dnaMD/dnaEY.py | https://github.com/rjdkmr/do_x3dna/blob/fe910335eefcada76737f9e7cd6f25036cd32ab6/dnaMD/dnaMD/dnaEY.py#L1269-L1412 | def getLocalDeformationEnergy(self, bp, complexDna, freeDnaFrames=None, boundDnaFrames=None, helical=False,
unit='kT', which='all', outFile=None):
r"""Deformation energy of the input DNA using local elastic properties
The deformation energy of a base-step/s for probe D... | [
"def",
"getLocalDeformationEnergy",
"(",
"self",
",",
"bp",
",",
"complexDna",
",",
"freeDnaFrames",
"=",
"None",
",",
"boundDnaFrames",
"=",
"None",
",",
"helical",
"=",
"False",
",",
"unit",
"=",
"'kT'",
",",
"which",
"=",
"'all'",
",",
"outFile",
"=",
... | r"""Deformation energy of the input DNA using local elastic properties
The deformation energy of a base-step/s for probe DNA object with reference to
the same base-step/s DNA present in the current DNA object.
The deformation free energy is calculated using elastic matrix as follows
.... | [
"r",
"Deformation",
"energy",
"of",
"the",
"input",
"DNA",
"using",
"local",
"elastic",
"properties"
] | python | train | 39.930556 |
bcbio/bcbio-nextgen | bcbio/variation/population.py | https://github.com/bcbio/bcbio-nextgen/blob/6a9348c0054ccd5baffd22f1bb7d0422f6978b20/bcbio/variation/population.py#L389-L417 | def prep_db_parallel(samples, parallel_fn):
"""Prepares gemini databases in parallel, handling jointly called populations.
"""
batch_groups, singles, out_retrieve, extras = _group_by_batches(samples, _has_variant_calls)
to_process = []
has_batches = False
for (name, caller), info in batch_groups... | [
"def",
"prep_db_parallel",
"(",
"samples",
",",
"parallel_fn",
")",
":",
"batch_groups",
",",
"singles",
",",
"out_retrieve",
",",
"extras",
"=",
"_group_by_batches",
"(",
"samples",
",",
"_has_variant_calls",
")",
"to_process",
"=",
"[",
"]",
"has_batches",
"="... | Prepares gemini databases in parallel, handling jointly called populations. | [
"Prepares",
"gemini",
"databases",
"in",
"parallel",
"handling",
"jointly",
"called",
"populations",
"."
] | python | train | 41.241379 |
mitsei/dlkit | dlkit/handcar/learning/objects.py | https://github.com/mitsei/dlkit/blob/445f968a175d61c8d92c0f617a3c17dc1dc7c584/dlkit/handcar/learning/objects.py#L575-L586 | def get_assessment_ids(self):
"""Gets the Ids of any assessments associated with this activity.
return: (osid.id.IdList) - list of assessment Ids
raise: IllegalState - is_assessment_based_activity() is false
compliance: mandatory - This method must be implemented.
"""
... | [
"def",
"get_assessment_ids",
"(",
"self",
")",
":",
"if",
"not",
"self",
".",
"is_assessment_based_activity",
"(",
")",
":",
"raise",
"IllegalState",
"(",
")",
"else",
":",
"return",
"[",
"Id",
"(",
"a",
")",
"for",
"a",
"in",
"self",
".",
"_my_map",
"... | Gets the Ids of any assessments associated with this activity.
return: (osid.id.IdList) - list of assessment Ids
raise: IllegalState - is_assessment_based_activity() is false
compliance: mandatory - This method must be implemented. | [
"Gets",
"the",
"Ids",
"of",
"any",
"assessments",
"associated",
"with",
"this",
"activity",
"."
] | python | train | 38.75 |
Pixelapse/pyglass | pyglass/api.py | https://github.com/Pixelapse/pyglass/blob/83cd0ff2b0b7cdaf4ec6f54559a626e67455cd33/pyglass/api.py#L9-L23 | def preview(src_path):
''' Generates a preview of src_path in the requested format.
:returns: A list of preview paths, one for each page.
'''
previews = []
if sketch.is_sketchfile(src_path):
previews = sketch.preview(src_path)
if not previews:
previews = quicklook.preview(src_path)
previews = [... | [
"def",
"preview",
"(",
"src_path",
")",
":",
"previews",
"=",
"[",
"]",
"if",
"sketch",
".",
"is_sketchfile",
"(",
"src_path",
")",
":",
"previews",
"=",
"sketch",
".",
"preview",
"(",
"src_path",
")",
"if",
"not",
"previews",
":",
"previews",
"=",
"qu... | Generates a preview of src_path in the requested format.
:returns: A list of preview paths, one for each page. | [
"Generates",
"a",
"preview",
"of",
"src_path",
"in",
"the",
"requested",
"format",
".",
":",
"returns",
":",
"A",
"list",
"of",
"preview",
"paths",
"one",
"for",
"each",
"page",
"."
] | python | train | 24.8 |
projectatomic/atomic-reactor | atomic_reactor/rpm_util.py | https://github.com/projectatomic/atomic-reactor/blob/fd31c01b964097210bf169960d051e5f04019a80/atomic_reactor/rpm_util.py#L36-L95 | def parse_rpm_output(output, tags=None, separator=';'):
"""
Parse output of the rpm query.
:param output: list, decoded output (str) from the rpm subprocess
:param tags: list, str fields used for query output
:return: list, dicts describing each rpm package
"""
if tags is None:
tag... | [
"def",
"parse_rpm_output",
"(",
"output",
",",
"tags",
"=",
"None",
",",
"separator",
"=",
"';'",
")",
":",
"if",
"tags",
"is",
"None",
":",
"tags",
"=",
"image_component_rpm_tags",
"def",
"field",
"(",
"tag",
")",
":",
"\"\"\"\n Get a field value by na... | Parse output of the rpm query.
:param output: list, decoded output (str) from the rpm subprocess
:param tags: list, str fields used for query output
:return: list, dicts describing each rpm package | [
"Parse",
"output",
"of",
"the",
"rpm",
"query",
"."
] | python | train | 25.9 |
coldfix/udiskie | udiskie/mount.py | https://github.com/coldfix/udiskie/blob/804c9d27df6f7361fec3097c432398f2d702f911/udiskie/mount.py#L611-L628 | async def delete(self, device, remove=True):
"""
Detach the loop device.
:param device: device object, block device path or mount path
:param bool remove: whether to unmount the partition etc.
:returns: whether the loop device is deleted
"""
device = self._find_d... | [
"async",
"def",
"delete",
"(",
"self",
",",
"device",
",",
"remove",
"=",
"True",
")",
":",
"device",
"=",
"self",
".",
"_find_device",
"(",
"device",
")",
"if",
"not",
"self",
".",
"is_handleable",
"(",
"device",
")",
"or",
"not",
"device",
".",
"is... | Detach the loop device.
:param device: device object, block device path or mount path
:param bool remove: whether to unmount the partition etc.
:returns: whether the loop device is deleted | [
"Detach",
"the",
"loop",
"device",
"."
] | python | train | 39.222222 |
wharris/dougrain | dougrain/builder.py | https://github.com/wharris/dougrain/blob/45062a1562fc34793e40c6253a93aa91eb4cf855/dougrain/builder.py#L106-L151 | def add_link(self, rel, target, wrap=False, **kwargs):
"""Adds a link to the document.
This method adds a link to the given ``target`` to the document with
the given ``rel``. If one or more links are already present for that
link relationship type, the new link will be added to the exis... | [
"def",
"add_link",
"(",
"self",
",",
"rel",
",",
"target",
",",
"wrap",
"=",
"False",
",",
"*",
"*",
"kwargs",
")",
":",
"if",
"isinstance",
"(",
"target",
",",
"bytes",
")",
":",
"target",
"=",
"target",
".",
"decode",
"(",
"'utf-8'",
")",
"if",
... | Adds a link to the document.
This method adds a link to the given ``target`` to the document with
the given ``rel``. If one or more links are already present for that
link relationship type, the new link will be added to the existing
links for that link relationship type.
Unlik... | [
"Adds",
"a",
"link",
"to",
"the",
"document",
"."
] | python | train | 43.173913 |
vsjha18/nsetools | utils.py | https://github.com/vsjha18/nsetools/blob/c306b568471701c19195d2f17e112cc92022d3e0/utils.py#L29-L44 | def byte_adaptor(fbuffer):
""" provides py3 compatibility by converting byte based
file stream to string based file stream
Arguments:
fbuffer: file like objects containing bytes
Returns:
string buffer
"""
if six.PY3:
strings = fbuffer.read().decode('latin-1')
fb... | [
"def",
"byte_adaptor",
"(",
"fbuffer",
")",
":",
"if",
"six",
".",
"PY3",
":",
"strings",
"=",
"fbuffer",
".",
"read",
"(",
")",
".",
"decode",
"(",
"'latin-1'",
")",
"fbuffer",
"=",
"six",
".",
"StringIO",
"(",
"strings",
")",
"return",
"fbuffer",
"... | provides py3 compatibility by converting byte based
file stream to string based file stream
Arguments:
fbuffer: file like objects containing bytes
Returns:
string buffer | [
"provides",
"py3",
"compatibility",
"by",
"converting",
"byte",
"based",
"file",
"stream",
"to",
"string",
"based",
"file",
"stream"
] | python | train | 24.375 |
openstack/horizon | openstack_dashboard/api/neutron.py | https://github.com/openstack/horizon/blob/5601ea9477323e599d9b766fcac1f8be742935b2/openstack_dashboard/api/neutron.py#L471-L480 | def list_by_instance(self, instance_id):
"""Gets security groups of an instance.
:returns: List of SecurityGroup objects associated with the instance
"""
ports = port_list(self.request, device_id=instance_id)
sg_ids = []
for p in ports:
sg_ids += p.security_g... | [
"def",
"list_by_instance",
"(",
"self",
",",
"instance_id",
")",
":",
"ports",
"=",
"port_list",
"(",
"self",
".",
"request",
",",
"device_id",
"=",
"instance_id",
")",
"sg_ids",
"=",
"[",
"]",
"for",
"p",
"in",
"ports",
":",
"sg_ids",
"+=",
"p",
".",
... | Gets security groups of an instance.
:returns: List of SecurityGroup objects associated with the instance | [
"Gets",
"security",
"groups",
"of",
"an",
"instance",
"."
] | python | train | 37.6 |
rosscdh/hellosign | hellosign/hellosign.py | https://github.com/rosscdh/hellosign/blob/4061c2733fa9f1b6ebefa99bed69df8373eb93b3/hellosign/hellosign.py#L43-L51 | def add_doc(self, doc):
""" Simple dict of {'name': '@filename.pdf'}"""
if isinstance(doc, HelloDoc) and doc.validate():
self.docs.append(doc)
else:
if not doc.validate():
raise Exception("HelloDoc Errors %s" % (doc.errors,))
else:
... | [
"def",
"add_doc",
"(",
"self",
",",
"doc",
")",
":",
"if",
"isinstance",
"(",
"doc",
",",
"HelloDoc",
")",
"and",
"doc",
".",
"validate",
"(",
")",
":",
"self",
".",
"docs",
".",
"append",
"(",
"doc",
")",
"else",
":",
"if",
"not",
"doc",
".",
... | Simple dict of {'name': '@filename.pdf'} | [
"Simple",
"dict",
"of",
"{",
"name",
":"
] | python | train | 42.666667 |
portfors-lab/sparkle | sparkle/data/open.py | https://github.com/portfors-lab/sparkle/blob/5fad1cf2bec58ec6b15d91da20f6236a74826110/sparkle/data/open.py#L5-L29 | def open_acqdata(filename, user='unknown', filemode='w-'):
"""Opens and returns the correct AcquisitionData object according to filename extention.
Supported extentions:
* .hdf5, .h5 for sparkle data
* .pst, .raw for batlab data. Both the .pst and .raw file must be co-located and share the same base fi... | [
"def",
"open_acqdata",
"(",
"filename",
",",
"user",
"=",
"'unknown'",
",",
"filemode",
"=",
"'w-'",
")",
":",
"if",
"filename",
".",
"lower",
"(",
")",
".",
"endswith",
"(",
"(",
"\".hdf5\"",
",",
"\".h5\"",
")",
")",
":",
"return",
"HDF5Data",
"(",
... | Opens and returns the correct AcquisitionData object according to filename extention.
Supported extentions:
* .hdf5, .h5 for sparkle data
* .pst, .raw for batlab data. Both the .pst and .raw file must be co-located and share the same base file name, but only one should be provided to this function
... | [
"Opens",
"and",
"returns",
"the",
"correct",
"AcquisitionData",
"object",
"according",
"to",
"filename",
"extention",
"."
] | python | train | 38.52 |
molmod/molmod | molmod/molecules.py | https://github.com/molmod/molmod/blob/a7b5b4364ed514ad4c465856c05b5eda1cb561e0/molmod/molecules.py#L278-L292 | def compute_rotsym(self, threshold=1e-3*angstrom):
"""Compute the rotational symmetry number.
Optional argument:
| ``threshold`` -- only when a rotation results in an rmsd below the given
threshold, the rotation is considered to transform the
... | [
"def",
"compute_rotsym",
"(",
"self",
",",
"threshold",
"=",
"1e-3",
"*",
"angstrom",
")",
":",
"# Generate a graph with a more permissive threshold for bond lengths:",
"# (is convenient in case of transition state geometries)",
"graph",
"=",
"MolecularGraph",
".",
"from_geometry... | Compute the rotational symmetry number.
Optional argument:
| ``threshold`` -- only when a rotation results in an rmsd below the given
threshold, the rotation is considered to transform the
molecule onto itself. | [
"Compute",
"the",
"rotational",
"symmetry",
"number",
"."
] | python | train | 52.4 |
imjoey/pyhaproxy | pyhaproxy/parse.py | https://github.com/imjoey/pyhaproxy/blob/4f0904acfc6bdb29ba6104ce2f6724c0330441d3/pyhaproxy/parse.py#L57-L69 | def build_global(self, global_node):
"""parse `global` section, and return the config.Global
Args:
global_node (TreeNode): `global` section treenode
Returns:
config.Global: an object
"""
config_block_lines = self.__build_config_block(
globa... | [
"def",
"build_global",
"(",
"self",
",",
"global_node",
")",
":",
"config_block_lines",
"=",
"self",
".",
"__build_config_block",
"(",
"global_node",
".",
"config_block",
")",
"return",
"config",
".",
"Global",
"(",
"config_block",
"=",
"config_block_lines",
")"
] | parse `global` section, and return the config.Global
Args:
global_node (TreeNode): `global` section treenode
Returns:
config.Global: an object | [
"parse",
"global",
"section",
"and",
"return",
"the",
"config",
".",
"Global"
] | python | train | 30 |
thebigmunch/gmusicapi-wrapper | gmusicapi_wrapper/musicmanager.py | https://github.com/thebigmunch/gmusicapi-wrapper/blob/8708683cd33955def1378fc28319ef37805b851d/gmusicapi_wrapper/musicmanager.py#L265-L369 | def upload(self, filepaths, enable_matching=False, transcode_quality='320k', delete_on_success=False):
"""Upload local songs to Google Music.
Parameters:
filepaths (list or str): Filepath(s) to upload.
enable_matching (bool): If ``True`` attempt to use `scan and match
<http://support.google.com/googlepl... | [
"def",
"upload",
"(",
"self",
",",
"filepaths",
",",
"enable_matching",
"=",
"False",
",",
"transcode_quality",
"=",
"'320k'",
",",
"delete_on_success",
"=",
"False",
")",
":",
"filenum",
"=",
"0",
"total",
"=",
"len",
"(",
"filepaths",
")",
"results",
"="... | Upload local songs to Google Music.
Parameters:
filepaths (list or str): Filepath(s) to upload.
enable_matching (bool): If ``True`` attempt to use `scan and match
<http://support.google.com/googleplay/bin/answer.py?hl=en&answer=2920799&topic=2450455>`__.
This requieres ffmpeg or avconv.
transcode_... | [
"Upload",
"local",
"songs",
"to",
"Google",
"Music",
"."
] | python | valid | 37.685714 |
msikma/kanaconv | kanaconv/utils.py | https://github.com/msikma/kanaconv/blob/194f142e616ab5dd6d13a687b96b9f8abd1b4ea8/kanaconv/utils.py#L72-L95 | def _switch_charset_list(characters, target=''):
'''
Switches the character set of a list. If a character does not have
an equivalent in the target script (e.g. ヹ when converting to hiragana),
the original character is kept.
'''
# Copy the list to avoid modifying the existing one.
characters... | [
"def",
"_switch_charset_list",
"(",
"characters",
",",
"target",
"=",
"''",
")",
":",
"# Copy the list to avoid modifying the existing one.",
"characters",
"=",
"characters",
"[",
":",
"]",
"offset",
"=",
"block_offset",
"*",
"offsets",
"[",
"target",
"]",
"[",
"'... | Switches the character set of a list. If a character does not have
an equivalent in the target script (e.g. ヹ when converting to hiragana),
the original character is kept. | [
"Switches",
"the",
"character",
"set",
"of",
"a",
"list",
".",
"If",
"a",
"character",
"does",
"not",
"have",
"an",
"equivalent",
"in",
"the",
"target",
"script",
"(",
"e",
".",
"g",
".",
"ヹ",
"when",
"converting",
"to",
"hiragana",
")",
"the",
"origin... | python | train | 34.583333 |
SMTG-UCL/sumo | sumo/plotting/dos_plotter.py | https://github.com/SMTG-UCL/sumo/blob/47aec6bbfa033a624435a65bd4edabd18bfb437f/sumo/plotting/dos_plotter.py#L190-L320 | def get_plot(self, subplot=False, width=None, height=None, xmin=-6.,
xmax=6., yscale=1, colours=None, plot_total=True,
legend_on=True, num_columns=2, legend_frame_on=False,
legend_cutoff=3, xlabel='Energy (eV)', ylabel='Arb. units',
zero_to_efermi=True... | [
"def",
"get_plot",
"(",
"self",
",",
"subplot",
"=",
"False",
",",
"width",
"=",
"None",
",",
"height",
"=",
"None",
",",
"xmin",
"=",
"-",
"6.",
",",
"xmax",
"=",
"6.",
",",
"yscale",
"=",
"1",
",",
"colours",
"=",
"None",
",",
"plot_total",
"="... | Get a :obj:`matplotlib.pyplot` object of the density of states.
Args:
subplot (:obj:`bool`, optional): Plot the density of states for
each element on separate subplots. Defaults to ``False``.
width (:obj:`float`, optional): The width of the plot.
height (:obj... | [
"Get",
"a",
":",
"obj",
":",
"matplotlib",
".",
"pyplot",
"object",
"of",
"the",
"density",
"of",
"states",
"."
] | python | train | 46.984733 |
ktbyers/netmiko | netmiko/paloalto/paloalto_panos.py | https://github.com/ktbyers/netmiko/blob/54e6116c0b4664de2123081937e0a9a27bdfdfea/netmiko/paloalto/paloalto_panos.py#L141-L158 | def strip_context_items(self, a_string):
"""Strip PaloAlto-specific output.
PaloAlto will also put a configuration context:
[edit]
This method removes those lines.
"""
strings_to_strip = [r"\[edit.*\]"]
response_list = a_string.split(self.RESPONSE_RETURN)
... | [
"def",
"strip_context_items",
"(",
"self",
",",
"a_string",
")",
":",
"strings_to_strip",
"=",
"[",
"r\"\\[edit.*\\]\"",
"]",
"response_list",
"=",
"a_string",
".",
"split",
"(",
"self",
".",
"RESPONSE_RETURN",
")",
"last_line",
"=",
"response_list",
"[",
"-",
... | Strip PaloAlto-specific output.
PaloAlto will also put a configuration context:
[edit]
This method removes those lines. | [
"Strip",
"PaloAlto",
"-",
"specific",
"output",
"."
] | python | train | 28.722222 |
codelv/enaml-native-cli | enamlnativecli/main.py | https://github.com/codelv/enaml-native-cli/blob/81d6faa7e3dd437956f661c512031e49c0d44b63/enamlnativecli/main.py#L868-L881 | def find_packages(path):
""" Find all java files matching the "*Package.java" pattern within
the given enaml package directory relative to the java source path.
"""
matches = []
root = join(path, 'src', 'main', 'java')
for folder, dirnames, filenames in os.walk(root):
... | [
"def",
"find_packages",
"(",
"path",
")",
":",
"matches",
"=",
"[",
"]",
"root",
"=",
"join",
"(",
"path",
",",
"'src'",
",",
"'main'",
",",
"'java'",
")",
"for",
"folder",
",",
"dirnames",
",",
"filenames",
"in",
"os",
".",
"walk",
"(",
"root",
")... | Find all java files matching the "*Package.java" pattern within
the given enaml package directory relative to the java source path. | [
"Find",
"all",
"java",
"files",
"matching",
"the",
"*",
"Package",
".",
"java",
"pattern",
"within",
"the",
"given",
"enaml",
"package",
"directory",
"relative",
"to",
"the",
"java",
"source",
"path",
"."
] | python | train | 51.5 |
tensorflow/cleverhans | cleverhans/train.py | https://github.com/tensorflow/cleverhans/blob/97488e215760547b81afc53f5e5de8ba7da5bd98/cleverhans/train.py#L38-L274 | def train(sess, loss, x_train, y_train,
init_all=False, evaluate=None, feed=None, args=None,
rng=None, var_list=None, fprop_args=None, optimizer=None,
devices=None, x_batch_preprocessor=None, use_ema=False,
ema_decay=.998, run_canary=None,
loss_threshold=1e5, dataset_tr... | [
"def",
"train",
"(",
"sess",
",",
"loss",
",",
"x_train",
",",
"y_train",
",",
"init_all",
"=",
"False",
",",
"evaluate",
"=",
"None",
",",
"feed",
"=",
"None",
",",
"args",
"=",
"None",
",",
"rng",
"=",
"None",
",",
"var_list",
"=",
"None",
",",
... | Run (optionally multi-replica, synchronous) training to minimize `loss`
:param sess: TF session to use when training the graph
:param loss: tensor, the loss to minimize
:param x_train: numpy array with training inputs or tf Dataset
:param y_train: numpy array with training outputs or tf Dataset
:param init_al... | [
"Run",
"(",
"optionally",
"multi",
"-",
"replica",
"synchronous",
")",
"training",
"to",
"minimize",
"loss",
":",
"param",
"sess",
":",
"TF",
"session",
"to",
"use",
"when",
"training",
"the",
"graph",
":",
"param",
"loss",
":",
"tensor",
"the",
"loss",
... | python | train | 41.696203 |
vaexio/vaex | packages/vaex-core/vaex/dataframe.py | https://github.com/vaexio/vaex/blob/a45b672f8287afca2ada8e36b74b604b9b28dd85/packages/vaex-core/vaex/dataframe.py#L5080-L5103 | def export(self, path, column_names=None, byteorder="=", shuffle=False, selection=False, progress=None, virtual=False, sort=None, ascending=True):
"""Exports the DataFrame to a file written with arrow
:param DataFrameLocal df: DataFrame to export
:param str path: path for file
:param li... | [
"def",
"export",
"(",
"self",
",",
"path",
",",
"column_names",
"=",
"None",
",",
"byteorder",
"=",
"\"=\"",
",",
"shuffle",
"=",
"False",
",",
"selection",
"=",
"False",
",",
"progress",
"=",
"None",
",",
"virtual",
"=",
"False",
",",
"sort",
"=",
"... | Exports the DataFrame to a file written with arrow
:param DataFrameLocal df: DataFrame to export
:param str path: path for file
:param lis[str] column_names: list of column names to export or None for all columns
:param str byteorder: = for native, < for little endian and > for big endi... | [
"Exports",
"the",
"DataFrame",
"to",
"a",
"file",
"written",
"with",
"arrow"
] | python | test | 71.75 |
cdriehuys/django-rest-email-auth | rest_email_auth/serializers.py | https://github.com/cdriehuys/django-rest-email-auth/blob/7e752c4d77ae02d2d046f214f56e743aa12ab23f/rest_email_auth/serializers.py#L241-L262 | def save(self):
"""
Send out a password reset if the provided data is valid.
If the provided email address exists and is verified, a reset
email is sent to the address.
Returns:
The password reset token if it was returned and ``None``
otherwise.
... | [
"def",
"save",
"(",
"self",
")",
":",
"try",
":",
"email",
"=",
"models",
".",
"EmailAddress",
".",
"objects",
".",
"get",
"(",
"email",
"=",
"self",
".",
"validated_data",
"[",
"\"email\"",
"]",
",",
"is_verified",
"=",
"True",
")",
"except",
"models"... | Send out a password reset if the provided data is valid.
If the provided email address exists and is verified, a reset
email is sent to the address.
Returns:
The password reset token if it was returned and ``None``
otherwise. | [
"Send",
"out",
"a",
"password",
"reset",
"if",
"the",
"provided",
"data",
"is",
"valid",
"."
] | python | valid | 29 |
intelsdi-x/snap-plugin-lib-py | examples/processor/tag.py | https://github.com/intelsdi-x/snap-plugin-lib-py/blob/8da5d00ac5f9d2b48a7239563ac7788209891ca4/examples/processor/tag.py#L34-L55 | def process(self, metrics, config):
"""Processes metrics.
This method is called by the Snap deamon during the process phase
of the execution of a Snap workflow. Examples of processing metrics
include applying filtering, max, min, average functions as well as
adding additional c... | [
"def",
"process",
"(",
"self",
",",
"metrics",
",",
"config",
")",
":",
"LOG",
".",
"debug",
"(",
"\"Process called\"",
")",
"for",
"metric",
"in",
"metrics",
":",
"metric",
".",
"tags",
"[",
"\"instance-id\"",
"]",
"=",
"config",
"[",
"\"instance-id\"",
... | Processes metrics.
This method is called by the Snap deamon during the process phase
of the execution of a Snap workflow. Examples of processing metrics
include applying filtering, max, min, average functions as well as
adding additional context to the metrics to name just a few.
... | [
"Processes",
"metrics",
"."
] | python | train | 37.363636 |
CI-WATER/gsshapy | gsshapy/orm/wms_dataset.py | https://github.com/CI-WATER/gsshapy/blob/00fd4af0fd65f1614d75a52fe950a04fb0867f4c/gsshapy/orm/wms_dataset.py#L236-L306 | def getAsKmlPngAnimation(self, session, projectFile=None, path=None, documentName=None, colorRamp=None, alpha=1.0,
noDataValue=0, drawOrder=0, cellSize=None, resampleMethod='NearestNeighbour'):
"""
Retrieve the WMS dataset as a PNG time stamped KMZ
Args:
... | [
"def",
"getAsKmlPngAnimation",
"(",
"self",
",",
"session",
",",
"projectFile",
"=",
"None",
",",
"path",
"=",
"None",
",",
"documentName",
"=",
"None",
",",
"colorRamp",
"=",
"None",
",",
"alpha",
"=",
"1.0",
",",
"noDataValue",
"=",
"0",
",",
"drawOrde... | Retrieve the WMS dataset as a PNG time stamped KMZ
Args:
session (:mod:`sqlalchemy.orm.session.Session`): SQLAlchemy session object bound to PostGIS enabled database.
projectFile(:class:`gsshapy.orm.ProjectFile`): Project file object for the GSSHA project to which the WMS dataset belong... | [
"Retrieve",
"the",
"WMS",
"dataset",
"as",
"a",
"PNG",
"time",
"stamped",
"KMZ"
] | python | train | 64.690141 |
venthur/python-debianbts | debianbts/debianbts.py | https://github.com/venthur/python-debianbts/blob/72cf11ae3458a8544142e9f365aaafe25634dd4f/debianbts/debianbts.py#L249-L282 | def get_usertag(email, *tags):
"""Get buglists by usertags.
Parameters
----------
email : str
tags : tuple of strings
If tags are given the dictionary is limited to the matching
tags, if no tags are given all available tags are returned.
Returns
-------
mapping : dict
... | [
"def",
"get_usertag",
"(",
"email",
",",
"*",
"tags",
")",
":",
"reply",
"=",
"_soap_client_call",
"(",
"'get_usertag'",
",",
"email",
",",
"*",
"tags",
")",
"map_el",
"=",
"reply",
"(",
"'s-gensym3'",
")",
"mapping",
"=",
"{",
"}",
"# element <s-gensys3> ... | Get buglists by usertags.
Parameters
----------
email : str
tags : tuple of strings
If tags are given the dictionary is limited to the matching
tags, if no tags are given all available tags are returned.
Returns
-------
mapping : dict
a mapping of usertag -> buglist | [
"Get",
"buglists",
"by",
"usertags",
"."
] | python | train | 36.323529 |
jorgenschaefer/elpy | elpy/server.py | https://github.com/jorgenschaefer/elpy/blob/ffd982f829b11e53f2be187c7b770423341f29bc/elpy/server.py#L217-L222 | def rpc_fix_code_with_yapf(self, source, directory):
"""Formats Python code to conform to the PEP 8 style guide.
"""
source = get_source(source)
return fix_code_with_yapf(source, directory) | [
"def",
"rpc_fix_code_with_yapf",
"(",
"self",
",",
"source",
",",
"directory",
")",
":",
"source",
"=",
"get_source",
"(",
"source",
")",
"return",
"fix_code_with_yapf",
"(",
"source",
",",
"directory",
")"
] | Formats Python code to conform to the PEP 8 style guide. | [
"Formats",
"Python",
"code",
"to",
"conform",
"to",
"the",
"PEP",
"8",
"style",
"guide",
"."
] | python | train | 36.166667 |
Crypto-toolbox/bitex | bitex/api/WSS/bitfinex.py | https://github.com/Crypto-toolbox/bitex/blob/56d46ea3db6de5219a72dad9b052fbabc921232f/bitex/api/WSS/bitfinex.py#L215-L253 | def stop(self):
"""
Stop all threads and modules of the client.
:return:
"""
super(BitfinexWSS, self).stop()
log.info("BitfinexWSS.stop(): Stopping client..")
log.info("BitfinexWSS.stop(): Joining receiver thread..")
try:
self.receiver_thread... | [
"def",
"stop",
"(",
"self",
")",
":",
"super",
"(",
"BitfinexWSS",
",",
"self",
")",
".",
"stop",
"(",
")",
"log",
".",
"info",
"(",
"\"BitfinexWSS.stop(): Stopping client..\"",
")",
"log",
".",
"info",
"(",
"\"BitfinexWSS.stop(): Joining receiver thread..\"",
"... | Stop all threads and modules of the client.
:return: | [
"Stop",
"all",
"threads",
"and",
"modules",
"of",
"the",
"client",
".",
":",
"return",
":"
] | python | train | 30.74359 |
paperhive/ansible-ec2-inventory | ansible_ec2_inventory/ec2inventory.py | https://github.com/paperhive/ansible-ec2-inventory/blob/6a13f9de61c089a7b13bce494adceb7507971059/ansible_ec2_inventory/ec2inventory.py#L328-L333 | def boto_fix_security_token_in_profile(self, connect_args):
''' monkey patch for boto issue boto/boto#2100 '''
profile = 'profile ' + self.boto_profile
if boto.config.has_option(profile, 'aws_security_token'):
connect_args['security_token'] = boto.config.get(profile, 'aws_security_to... | [
"def",
"boto_fix_security_token_in_profile",
"(",
"self",
",",
"connect_args",
")",
":",
"profile",
"=",
"'profile '",
"+",
"self",
".",
"boto_profile",
"if",
"boto",
".",
"config",
".",
"has_option",
"(",
"profile",
",",
"'aws_security_token'",
")",
":",
"conne... | monkey patch for boto issue boto/boto#2100 | [
"monkey",
"patch",
"for",
"boto",
"issue",
"boto",
"/",
"boto#2100"
] | python | train | 58 |
bambinos/bambi | bambi/results.py | https://github.com/bambinos/bambi/blob/b4a0ced917968bb99ca20915317417d708387946/bambi/results.py#L369-L402 | def to_df(self, varnames=None, ranefs=False, transformed=False,
chains=None):
'''
Returns the MCMC samples in a nice, neat pandas DataFrame with all MCMC chains
concatenated.
Args:
varnames (list): List of variable names to include; if None
(def... | [
"def",
"to_df",
"(",
"self",
",",
"varnames",
"=",
"None",
",",
"ranefs",
"=",
"False",
",",
"transformed",
"=",
"False",
",",
"chains",
"=",
"None",
")",
":",
"# filter out unwanted variables",
"names",
"=",
"self",
".",
"_filter_names",
"(",
"varnames",
... | Returns the MCMC samples in a nice, neat pandas DataFrame with all MCMC chains
concatenated.
Args:
varnames (list): List of variable names to include; if None
(default), all eligible variables are included.
ranefs (bool): Whether or not to include random effects ... | [
"Returns",
"the",
"MCMC",
"samples",
"in",
"a",
"nice",
"neat",
"pandas",
"DataFrame",
"with",
"all",
"MCMC",
"chains",
"concatenated",
"."
] | python | train | 42.029412 |
Chyroc/WechatSogou | wechatsogou/request.py | https://github.com/Chyroc/WechatSogou/blob/2e0e9886f555fd8bcfc7ae9718ced6ce955cd24a/wechatsogou/request.py#L115-L158 | def gen_hot_url(hot_index, page=1):
"""拼接 首页热门文章 URL
Parameters
----------
hot_index : WechatSogouConst.hot_index
首页热门文章的分类（常量）：WechatSogouConst.hot_index.xxx
page : int
页数
Returns
-------
str
热门文章分类的url
"""
... | [
"def",
"gen_hot_url",
"(",
"hot_index",
",",
"page",
"=",
"1",
")",
":",
"assert",
"hasattr",
"(",
"WechatSogouConst",
".",
"hot_index",
",",
"hot_index",
")",
"assert",
"isinstance",
"(",
"page",
",",
"int",
")",
"and",
"page",
">",
"0",
"index_urls",
"... | 拼接 首页热门文章 URL
Parameters
----------
hot_index : WechatSogouConst.hot_index
首页热门文章的分类（常量）：WechatSogouConst.hot_index.xxx
page : int
页数
Returns
-------
str
热门文章分类的url | [
"拼接",
"首页热门文章",
"URL"
] | python | train | 39.386364 |
SmokinCaterpillar/pypet | examples/example_05_custom_parameter.py | https://github.com/SmokinCaterpillar/pypet/blob/97ad3e80d46dbdea02deeb98ea41f05a19565826/examples/example_05_custom_parameter.py#L128-L144 | def diff_lorenz(value_array, sigma, beta, rho):
"""The Lorenz attractor differential equation
:param value_array: 3d array containing the x,y, and z component values.
:param sigma: Constant attractor parameter
:param beta: FConstant attractor parameter
:param rho: Constant attractor parameter
... | [
"def",
"diff_lorenz",
"(",
"value_array",
",",
"sigma",
",",
"beta",
",",
"rho",
")",
":",
"diff_array",
"=",
"np",
".",
"zeros",
"(",
"3",
")",
"diff_array",
"[",
"0",
"]",
"=",
"sigma",
"*",
"(",
"value_array",
"[",
"1",
"]",
"-",
"value_array",
... | The Lorenz attractor differential equation
:param value_array: 3d array containing the x,y, and z component values.
:param sigma: Constant attractor parameter
:param beta: FConstant attractor parameter
:param rho: Constant attractor parameter
:return: 3d array of the Lorenz system evaluated at `va... | [
"The",
"Lorenz",
"attractor",
"differential",
"equation"
] | python | test | 37.823529 |
a1ezzz/wasp-general | wasp_general/uri.py | https://github.com/a1ezzz/wasp-general/blob/1029839d33eb663f8dec76c1c46754d53c1de4a9/wasp_general/uri.py#L478-L487 | def strict_parse(cls, query_str, *specs, extra_parameters=True):
""" Parse query and return :class:`.WStrictURIQuery` object
:param query_str: query component of URI to parse
:param specs: list of parameters specifications
:param extra_parameters: whether parameters that was not specified in "specs" are allowe... | [
"def",
"strict_parse",
"(",
"cls",
",",
"query_str",
",",
"*",
"specs",
",",
"extra_parameters",
"=",
"True",
")",
":",
"plain_result",
"=",
"cls",
".",
"parse",
"(",
"query_str",
")",
"return",
"WStrictURIQuery",
"(",
"plain_result",
",",
"*",
"specs",
",... | Parse query and return :class:`.WStrictURIQuery` object
:param query_str: query component of URI to parse
:param specs: list of parameters specifications
:param extra_parameters: whether parameters that was not specified in "specs" are allowed
:return: WStrictURIQuery | [
"Parse",
"query",
"and",
"return",
":",
"class",
":",
".",
"WStrictURIQuery",
"object"
] | python | train | 46.5 |
wtsi-hgi/python-git-subrepo | gitsubrepo/_git.py | https://github.com/wtsi-hgi/python-git-subrepo/blob/bb2eb2bd9a7e51b862298ddb4168cc5b8633dad0/gitsubrepo/_git.py#L41-L47 | def get_directory_relative_to_git_root(directory: str):
"""
Gets the path to the given directory relative to the git repository root in which it is a subdirectory.
:param directory: the directory within a git repository
:return: the path to the directory relative to the git repository root
"""
r... | [
"def",
"get_directory_relative_to_git_root",
"(",
"directory",
":",
"str",
")",
":",
"return",
"os",
".",
"path",
".",
"relpath",
"(",
"os",
".",
"path",
".",
"realpath",
"(",
"directory",
")",
",",
"get_git_root_directory",
"(",
"directory",
")",
")"
] | Gets the path to the given directory relative to the git repository root in which it is a subdirectory.
:param directory: the directory within a git repository
:return: the path to the directory relative to the git repository root | [
"Gets",
"the",
"path",
"to",
"the",
"given",
"directory",
"relative",
"to",
"the",
"git",
"repository",
"root",
"in",
"which",
"it",
"is",
"a",
"subdirectory",
".",
":",
"param",
"directory",
":",
"the",
"directory",
"within",
"a",
"git",
"repository",
":"... | python | train | 57 |
cloudmesh-cmd3/cmd3 | cmd3/plugins/clear.py | https://github.com/cloudmesh-cmd3/cmd3/blob/92e33c96032fd3921f159198a0e57917c4dc34ed/cmd3/plugins/clear.py#L29-L60 | def do_banner(self, arg, arguments):
"""
::
Usage:
banner [-c CHAR] [-n WIDTH] [-i INDENT] [-r COLOR] TEXT
Arguments:
TEXT The text message from which to create the banner
CHAR The character for the frame.
WID... | [
"def",
"do_banner",
"(",
"self",
",",
"arg",
",",
"arguments",
")",
":",
"print",
"arguments",
"n",
"=",
"int",
"(",
"arguments",
"[",
"'-n'",
"]",
")",
"c",
"=",
"arguments",
"[",
"'-c'",
"]",
"i",
"=",
"int",
"(",
"arguments",
"[",
"'-i'",
"]",
... | ::
Usage:
banner [-c CHAR] [-n WIDTH] [-i INDENT] [-r COLOR] TEXT
Arguments:
TEXT The text message from which to create the banner
CHAR The character for the frame.
WIDTH Width of the banner
INDENT indentatio... | [
"::"
] | python | train | 34.9375 |
mlperf/training | rnn_translator/pytorch/seq2seq/train/fp_optimizers.py | https://github.com/mlperf/training/blob/1c6ae725a81d15437a2b2df05cac0673fde5c3a4/rnn_translator/pytorch/seq2seq/train/fp_optimizers.py#L14-L24 | def set_grads(params, params_with_grad):
"""
Copies gradients from param_with_grad to params
:param params: dst parameters
:param params_with_grad: src parameters
"""
for param, param_w_grad in zip(params, params_with_grad):
if param.grad is None:
... | [
"def",
"set_grads",
"(",
"params",
",",
"params_with_grad",
")",
":",
"for",
"param",
",",
"param_w_grad",
"in",
"zip",
"(",
"params",
",",
"params_with_grad",
")",
":",
"if",
"param",
".",
"grad",
"is",
"None",
":",
"param",
".",
"grad",
"=",
"torch",
... | Copies gradients from param_with_grad to params
:param params: dst parameters
:param params_with_grad: src parameters | [
"Copies",
"gradients",
"from",
"param_with_grad",
"to",
"params"
] | python | train | 39 |
googleapis/google-cloud-python | spanner/google/cloud/spanner_v1/pool.py | https://github.com/googleapis/google-cloud-python/blob/85e80125a59cb10f8cb105f25ecc099e4b940b50/spanner/google/cloud/spanner_v1/pool.py#L346-L358 | def bind(self, database):
"""Associate the pool with a database.
:type database: :class:`~google.cloud.spanner_v1.database.Database`
:param database: database used by the pool: used to create sessions
when needed.
"""
self._database = database
... | [
"def",
"bind",
"(",
"self",
",",
"database",
")",
":",
"self",
".",
"_database",
"=",
"database",
"for",
"_",
"in",
"xrange",
"(",
"self",
".",
"size",
")",
":",
"session",
"=",
"self",
".",
"_new_session",
"(",
")",
"session",
".",
"create",
"(",
... | Associate the pool with a database.
:type database: :class:`~google.cloud.spanner_v1.database.Database`
:param database: database used by the pool: used to create sessions
when needed. | [
"Associate",
"the",
"pool",
"with",
"a",
"database",
"."
] | python | train | 33.538462 |
pandas-dev/pandas | pandas/core/series.py | https://github.com/pandas-dev/pandas/blob/9feb3ad92cc0397a04b665803a49299ee7aa1037/pandas/core/series.py#L2069-L2132 | def quantile(self, q=0.5, interpolation='linear'):
"""
Return value at the given quantile.
Parameters
----------
q : float or array-like, default 0.5 (50% quantile)
0 <= q <= 1, the quantile(s) to compute.
interpolation : {'linear', 'lower', 'higher', 'midpoi... | [
"def",
"quantile",
"(",
"self",
",",
"q",
"=",
"0.5",
",",
"interpolation",
"=",
"'linear'",
")",
":",
"self",
".",
"_check_percentile",
"(",
"q",
")",
"# We dispatch to DataFrame so that core.internals only has to worry",
"# about 2D cases.",
"df",
"=",
"self",
".... | Return value at the given quantile.
Parameters
----------
q : float or array-like, default 0.5 (50% quantile)
0 <= q <= 1, the quantile(s) to compute.
interpolation : {'linear', 'lower', 'higher', 'midpoint', 'nearest'}
.. versionadded:: 0.18.0
This ... | [
"Return",
"value",
"at",
"the",
"given",
"quantile",
"."
] | python | train | 31.421875 |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.