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ArduPilot/MAVProxy
MAVProxy/modules/mavproxy_firmware.py
https://github.com/ArduPilot/MAVProxy/blob/f50bdeff33064876f7dc8dc4683d278ff47f75d5/MAVProxy/modules/mavproxy_firmware.py#L165-L171
def filter_rows(self, filters, rows): '''returns rows as filtered by filters''' ret = [] for row in rows: if not self.row_is_filtered(row, filters): ret.append(row) return ret
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returns rows as filtered by filters
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python
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aparo/pyes
pyes/managers.py
https://github.com/aparo/pyes/blob/712eb6095961755067b2b5baa262008ade6584b3/pyes/managers.py#L406-L414
def gateway_snapshot(self, indices=None): """ Gateway snapshot one or more indices (See :ref:`es-guide-reference-api-admin-indices-gateway-snapshot`) :keyword indices: a list of indices or None for default configured. """ path = self.conn._make_path(indices, (), '_gatewa...
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Gateway snapshot one or more indices (See :ref:`es-guide-reference-api-admin-indices-gateway-snapshot`) :keyword indices: a list of indices or None for default configured.
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python
train
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emory-libraries/eulfedora
eulfedora/api.py
https://github.com/emory-libraries/eulfedora/blob/161826f3fdcdab4007f6fa7dfd9f1ecabc4bcbe4/eulfedora/api.py#L788-L801
def setDatastreamVersionable(self, pid, dsID, versionable): '''Update datastream versionable setting. :param pid: object pid :param dsID: datastream id :param versionable: boolean :returns: boolean success ''' # /objects/{pid}/datastreams/{dsID} ? [versionable] ...
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Update datastream versionable setting. :param pid: object pid :param dsID: datastream id :param versionable: boolean :returns: boolean success
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python
train
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APSL/transmanager
transmanager/utils.py
https://github.com/APSL/transmanager/blob/79157085840008e146b264521681913090197ed1/transmanager/utils.py#L9-L24
def get_application_choices(): """ Get the select options for the application selector :return: """ result = [] keys = set() for ct in ContentType.objects.order_by('app_label', 'model'): try: if issubclass(ct.model_class(), TranslatableModel) and ct.app_label not in keys...
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Get the select options for the application selector :return:
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python
train
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senaite/senaite.core
bika/lims/barcode.py
https://github.com/senaite/senaite.core/blob/7602ce2ea2f9e81eb34e20ce17b98a3e70713f85/bika/lims/barcode.py#L121-L129
def handle_Sample(self, instance): """If this sample has a single AR, go there. If the sample has 0 or >1 ARs, go to the sample's view URL. """ ars = instance.getAnalysisRequests() if len(ars) == 1: return self.handle_AnalysisRequest(ars[0]) else: ...
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If this sample has a single AR, go there. If the sample has 0 or >1 ARs, go to the sample's view URL.
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python
train
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LionelR/pyair
pyair/reg.py
https://github.com/LionelR/pyair/blob/467e8a843ca9f882f8bb2958805b7293591996ad/pyair/reg.py#L632-L678
def excel_synthese(fct, df, excel_file): """ Enregistre dans un fichier Excel une synthèse des calculs réglementaires en fournissant les valeurs calculées suivant les réglementations définies dans chaque fonction de calcul et un tableau de nombre de dépassement. Les résultats sont enregistrés P...
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Enregistre dans un fichier Excel une synthèse des calculs réglementaires en fournissant les valeurs calculées suivant les réglementations définies dans chaque fonction de calcul et un tableau de nombre de dépassement. Les résultats sont enregistrés Paramètres: fct: fonction renvoyant les éléments c...
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python
valid
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wtolson/gnsq
gnsq/nsqd.py
https://github.com/wtolson/gnsq/blob/0fd02578b2c9c5fa30626d78579db2a46c10edac/gnsq/nsqd.py#L622-L644
def stats(self, topic=None, channel=None, text=False): """Return internal instrumented statistics. :param topic: (optional) filter to topic :param channel: (optional) filter to channel :param text: return the stats as a string (default: ``False``) """ if text: ...
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Return internal instrumented statistics. :param topic: (optional) filter to topic :param channel: (optional) filter to channel :param text: return the stats as a string (default: ``False``)
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python
train
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praekeltfoundation/seaworthy
docs/apigen.py
https://github.com/praekeltfoundation/seaworthy/blob/6f10a19b45d4ea1dc3bd0553cc4d0438696c079c/docs/apigen.py#L62-L83
def create_autosummary_file(modules, opts): # type: (List[unicode], Any, unicode) -> None """Create the module's index.""" lines = [ 'API Reference', '=============', '', '.. autosummary::', ' :template: api_module.rst', ' :toctree: {}'.format(opts.destdir...
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Create the module's index.
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python
train
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saltstack/salt
salt/states/mount.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/states/mount.py#L61-L728
def mounted(name, device, fstype, mkmnt=False, opts='defaults', dump=0, pass_num=0, config='/etc/fstab', persist=True, mount=True, user=None, match_on='auto', device_name_regex...
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Verify that a device is mounted name The path to the location where the device is to be mounted device The device name, typically the device node, such as ``/dev/sdb1`` or ``UUID=066e0200-2867-4ebe-b9e6-f30026ca2314`` or ``LABEL=DATA`` fstype The filesystem type, this will...
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python
train
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aaugustin/websockets
src/websockets/protocol.py
https://github.com/aaugustin/websockets/blob/17b3f47549b6f752a1be07fa1ba3037cb59c7d56/src/websockets/protocol.py#L953-L969
async def write_close_frame(self, data: bytes = b"") -> None: """ Write a close frame if and only if the connection state is OPEN. This dedicated coroutine must be used for writing close frames to ensure that at most one close frame is sent on a given connection. """ # ...
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Write a close frame if and only if the connection state is OPEN. This dedicated coroutine must be used for writing close frames to ensure that at most one close frame is sent on a given connection.
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python
train
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alvinwan/TexSoup
TexSoup/reader.py
https://github.com/alvinwan/TexSoup/blob/63323ed71510fd2351102b8c36660a3b7703cead/TexSoup/reader.py#L109-L120
def tokenize_punctuation_command(text): """Process command that augments or modifies punctuation. This is important to the tokenization of a string, as opening or closing punctuation is not supposed to match. :param Buffer text: iterator over text, with current position """ if text.peek() == '...
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Process command that augments or modifies punctuation. This is important to the tokenization of a string, as opening or closing punctuation is not supposed to match. :param Buffer text: iterator over text, with current position
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python
train
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manns/pyspread
pyspread/src/gui/_main_window.py
https://github.com/manns/pyspread/blob/0e2fd44c2e0f06605efc3058c20a43a8c1f9e7e0/pyspread/src/gui/_main_window.py#L1407-L1425
def OnTextColorDialog(self, event): """Event handler for launching text color dialog""" dlg = wx.ColourDialog(self.main_window) # Ensure the full colour dialog is displayed, # not the abbreviated version. dlg.GetColourData().SetChooseFull(True) if dlg.ShowModal() == wx...
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Event handler for launching text color dialog
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python
train
30.210526
vertexproject/synapse
synapse/datamodel.py
https://github.com/vertexproject/synapse/blob/22e67c5a8f6d7caddbcf34b39ab1bd2d6c4a6e0b/synapse/datamodel.py#L389-L411
def addDataModels(self, mods): ''' Adds a model definition (same format as input to Model.addDataModels and output of Model.getModelDef). ''' # Load all the universal properties for _, mdef in mods: for univname, _, _ in mdef.get('univs', ()): self.add...
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Adds a model definition (same format as input to Model.addDataModels and output of Model.getModelDef).
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python
train
36
spacetelescope/stsci.tools
lib/stsci/tools/parseinput.py
https://github.com/spacetelescope/stsci.tools/blob/9a022503ad24ca54ce83331482dfa3ff6de9f403/lib/stsci/tools/parseinput.py#L185-L218
def countinputs(inputlist): """ Determine the number of inputfiles provided by the user and the number of those files that are association tables Parameters ---------- inputlist : string the user input Returns ------- numInputs: int number of inputs provided by th...
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python
train
24.823529
kelproject/pykube
pykube/http.py
https://github.com/kelproject/pykube/blob/e8a46298a592ad9037587afb707ac75b3114eff9/pykube/http.py#L178-L185
def version(self): """ Get Kubernetes API version """ response = self.get(version="", base="/version") response.raise_for_status() data = response.json() return (data["major"], data["minor"])
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Get Kubernetes API version
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python
train
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saltstack/salt
salt/cloud/__init__.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/cloud/__init__.py#L623-L657
def map_providers(self, query='list_nodes', cached=False): ''' Return a mapping of what named VMs are running on what VM providers based on what providers are defined in the configuration and VMs ''' if cached is True and query in self.__cached_provider_queries: retur...
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Return a mapping of what named VMs are running on what VM providers based on what providers are defined in the configuration and VMs
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python
train
44.371429
mozilla/taar
taar/recommenders/hybrid_recommender.py
https://github.com/mozilla/taar/blob/4002eb395f0b7ad837f1578e92d590e2cf82bdca/taar/recommenders/hybrid_recommender.py#L28-L32
def get_randomized_guid_sample(self, item_count): """ Fetch a subset of randomzied GUIDs from the whitelist """ dataset = self.get_whitelist() random.shuffle(dataset) return dataset[:item_count]
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Fetch a subset of randomzied GUIDs from the whitelist
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python
train
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gem/oq-engine
openquake/hazardlib/calc/hazard_curve.py
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/calc/hazard_curve.py#L94-L176
def classical(group, src_filter, gsims, param, monitor=Monitor()): """ Compute the hazard curves for a set of sources belonging to the same tectonic region type for all the GSIMs associated to that TRT. The arguments are the same as in :func:`calc_hazard_curves`, except for ``gsims``, which is a lis...
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Compute the hazard curves for a set of sources belonging to the same tectonic region type for all the GSIMs associated to that TRT. The arguments are the same as in :func:`calc_hazard_curves`, except for ``gsims``, which is a list of GSIM instances. :returns: a dictionary {grp_id: pmap} with at...
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python
train
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cmbruns/pyopenvr
src/openvr/__init__.py
https://github.com/cmbruns/pyopenvr/blob/68395d26bb3df6ab1f0f059c38d441f962938be6/src/openvr/__init__.py#L2996-L3001
def getEventTypeNameFromEnum(self, eType): """returns the name of an EVREvent enum value""" fn = self.function_table.getEventTypeNameFromEnum result = fn(eType) return result
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returns the name of an EVREvent enum value
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python
train
33.666667
rigetti/pyquil
pyquil/device.py
https://github.com/rigetti/pyquil/blob/ec98e453084b0037d69d8c3245f6822a5422593d/pyquil/device.py#L354-L365
def isa_from_graph(graph: nx.Graph, oneq_type='Xhalves', twoq_type='CZ') -> ISA: """ Generate an ISA object from a NetworkX graph. :param graph: The graph :param oneq_type: The type of 1-qubit gate. Currently 'Xhalves' :param twoq_type: The type of 2-qubit gate. One of 'CZ' or 'CPHASE'. """ ...
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Generate an ISA object from a NetworkX graph. :param graph: The graph :param oneq_type: The type of 1-qubit gate. Currently 'Xhalves' :param twoq_type: The type of 2-qubit gate. One of 'CZ' or 'CPHASE'.
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python
train
46.666667
fermiPy/fermipy
fermipy/diffuse/source_factory.py
https://github.com/fermiPy/fermipy/blob/9df5e7e3728307fd58c5bba36fd86783c39fbad4/fermipy/diffuse/source_factory.py#L204-L217
def make_roi(cls, sources=None): """Build and return a `fermipy.roi_model.ROIModel` object from a dict with information about the sources """ if sources is None: sources = {} src_fact = cls() src_fact.add_sources(sources) ret_model = roi_model.ROIModel...
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Build and return a `fermipy.roi_model.ROIModel` object from a dict with information about the sources
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python
train
39.5
smarie/python-parsyfiles
parsyfiles/type_inspection_tools.py
https://github.com/smarie/python-parsyfiles/blob/344b37e1151e8d4e7c2ee49ae09d6568715ae64e/parsyfiles/type_inspection_tools.py#L90-L115
def robust_isinstance(inst, typ) -> bool: """ Similar to isinstance, but if 'typ' is a parametrized generic Type, it is first transformed into its base generic class so that the instance check works. It is also robust to Union and Any. :param inst: :param typ: :return: """ if typ is Any...
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train
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collectiveacuity/labPack
labpack/storage/google/drive.py
https://github.com/collectiveacuity/labPack/blob/52949ece35e72e3cc308f54d9ffa6bfbd96805b8/labpack/storage/google/drive.py#L236-L271
def _get_id(self, file_path): ''' a helper method for retrieving id of file or folder ''' title = '%s._get_id' % self.__class__.__name__ # construct request kwargs list_kwargs = { 'spaces': self.drive_space, 'fields': 'files(id, parents)' ...
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a helper method for retrieving id of file or folder
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annoviko/pyclustering
pyclustering/container/cftree.py
https://github.com/annoviko/pyclustering/blob/98aa0dd89fd36f701668fb1eb29c8fb5662bf7d0/pyclustering/container/cftree.py#L656-L665
def insert_entry(self, entry): """! @brief Insert new clustering feature to the leaf node. @param[in] entry (cfentry): Clustering feature. """ self.feature += entry; self.entries.append(entry);
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! @brief Insert new clustering feature to the leaf node. @param[in] entry (cfentry): Clustering feature.
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python
valid
29
pyQode/pyqode.core
pyqode/core/modes/pygments_sh.py
https://github.com/pyQode/pyqode.core/blob/a99ec6cd22d519394f613309412f8329dc4e90cb/pyqode/core/modes/pygments_sh.py#L185-L205
def set_mime_type(self, mime_type): """ Update the highlighter lexer based on a mime type. :param mime_type: mime type of the new lexer to setup. """ try: self.set_lexer_from_mime_type(mime_type) except ClassNotFound: _logger().exception('failed t...
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Update the highlighter lexer based on a mime type. :param mime_type: mime type of the new lexer to setup.
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python
train
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clalancette/pycdlib
pycdlib/udf.py
https://github.com/clalancette/pycdlib/blob/1e7b77a809e905d67dc71e12d70e850be26b6233/pycdlib/udf.py#L3184-L3200
def track_file_ident_desc(self, file_ident): # type: (UDFFileIdentifierDescriptor) -> None ''' A method to start tracking a UDF File Identifier descriptor in this UDF File Entry. Both 'tracking' and 'addition' add the identifier to the list of file identifiers, but tracking doee...
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python
train
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smira/py-numa
numa.py
https://github.com/smira/py-numa/blob/eb38979c61028eb9422a4ad1eda0387cd93ea390/numa.py#L354-L366
def get_run_on_node_mask(): """ Returns the mask of nodes that the current thread is allowed to run on. @return: node mask @rtype: C{set} """ bitmask = libnuma.numa_get_run_node_mask() nodemask = nodemask_t() libnuma.copy_bitmask_to_nodemask(bitmask, byref(nodemask)) libnuma.numa_bi...
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Returns the mask of nodes that the current thread is allowed to run on. @return: node mask @rtype: C{set}
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python
train
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EnigmaBridge/jbossply
jbossply/main.py
https://github.com/EnigmaBridge/jbossply/blob/44b30b15982cae781f0c356fab7263751b20b4d0/jbossply/main.py#L12-L23
def main(): """ Reads stdin jboss output, writes json on output :return: """ buff = '' for line in fileinput.input(): buff += line parser = jbossparser.JbossParser() result = parser.parse(buff) print(json.dumps(result))
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Reads stdin jboss output, writes json on output :return:
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python
train
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delfick/aws_syncr
aws_syncr/option_spec/aws_syncr_specs.py
https://github.com/delfick/aws_syncr/blob/8cd214b27c1eee98dfba4632cbb8bc0ae36356bd/aws_syncr/option_spec/aws_syncr_specs.py#L51-L63
def aws_syncr_spec(self): """Spec for aws_syncr options""" formatted_string = formatted(string_spec(), MergedOptionStringFormatter, expected_type=string_types) return create_spec(AwsSyncr , extra = defaulted(formatted_string, "") , stage = defaulted(formatted_string, "") ...
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Spec for aws_syncr options
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python
train
48.307692
tanghaibao/jcvi
jcvi/formats/blast.py
https://github.com/tanghaibao/jcvi/blob/d2e31a77b6ade7f41f3b321febc2b4744d1cdeca/jcvi/formats/blast.py#L383-L408
def gaps(args): """ %prog gaps A_vs_B.blast Find distribution of gap sizes betwen adjacent HSPs. """ p = OptionParser(gaps.__doc__) opts, args = p.parse_args(args) if len(args) != 1: sys.exit(not p.print_help()) blastfile, = args blast = BlastSlow(blastfile) logging.de...
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%prog gaps A_vs_B.blast Find distribution of gap sizes betwen adjacent HSPs.
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python
train
27.192308
happyleavesaoc/python-snapcast
snapcast/control/client.py
https://github.com/happyleavesaoc/python-snapcast/blob/9b3c483358677327c7fd6d0666bf474c19d87f19/snapcast/control/client.py#L94-L104
def set_volume(self, percent, update_group=True): """Set client volume percent.""" if percent not in range(0, 101): raise ValueError('Volume percent out of range') new_volume = self._client['config']['volume'] new_volume['percent'] = percent self._client['config']['vo...
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Set client volume percent.
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python
train
52.545455
monarch-initiative/dipper
dipper/sources/UDP.py
https://github.com/monarch-initiative/dipper/blob/24cc80db355bbe15776edc5c7b41e0886959ba41/dipper/sources/UDP.py#L324-L439
def _add_variant_gene_relationship(self, patient_var_map, gene_coordinate_map): """ Right now it is unclear the best approach on how to connect variants to genes. In most cases has_affected_locus/GENO:0000418 is accurate; however, there are cases where a variant is in the intron ...
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python
train
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fabioz/PyDev.Debugger
_pydevd_bundle/pydevd_reload.py
https://github.com/fabioz/PyDev.Debugger/blob/ed9c4307662a5593b8a7f1f3389ecd0e79b8c503/_pydevd_bundle/pydevd_reload.py#L167-L179
def xreload(mod): """Reload a module in place, updating classes, methods and functions. mod: a module object Returns a boolean indicating whether a change was done. """ r = Reload(mod) r.apply() found_change = r.found_change r = None pydevd_dont_trace.clear_trace_filter_cache() ...
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python
train
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osrg/ryu
ryu/services/protocols/bgp/core_managers/peer_manager.py
https://github.com/osrg/ryu/blob/6f906e72c92e10bd0264c9b91a2f7bb85b97780c/ryu/services/protocols/bgp/core_managers/peer_manager.py#L77-L83
def get_peers_in_established(self): """Returns list of peers in established state.""" est_peers = [] for peer in self._peers.values(): if peer.in_established: est_peers.append(peer) return est_peers
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Returns list of peers in established state.
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python
train
36
rvswift/EB
EB/builder/splitter/splitter_io.py
https://github.com/rvswift/EB/blob/341880b79faf8147dc9fa6e90438531cd09fabcc/EB/builder/splitter/splitter_io.py#L26-L70
def print_extended_help(): """ Prints an extended help message. """ # initiate TextWrapper class, which will handle all of the string formatting w = textwrap.TextWrapper() w.expand_tabs = False w.width=110 w.initial_indent = ' ' w.subsequent_indent = ' ' print('') print(te...
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Prints an extended help message.
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python
train
34.266667
codeinn/vcs
vcs/backends/git/changeset.py
https://github.com/codeinn/vcs/blob/e6cd94188e9c36d273411bf3adc0584ac6ab92a0/vcs/backends/git/changeset.py#L469-L474
def affected_files(self): """ Get's a fast accessible file changes for given changeset """ added, modified, deleted = self._changes_cache return list(added.union(modified).union(deleted))
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Get's a fast accessible file changes for given changeset
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python
train
37
DataBiosphere/toil
src/toil/leader.py
https://github.com/DataBiosphere/toil/blob/a8252277ff814e7bee0971139c2344f88e44b644/src/toil/leader.py#L815-L843
def getSuccessors(jobGraph, alreadySeenSuccessors, jobStore): """ Gets successors of the given job by walking the job graph recursively. Any successor in alreadySeenSuccessors is ignored and not traversed. Returns the set of found successors. This set is added to alreadySeenSuccessors. ...
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Gets successors of the given job by walking the job graph recursively. Any successor in alreadySeenSuccessors is ignored and not traversed. Returns the set of found successors. This set is added to alreadySeenSuccessors.
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python
train
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rstoneback/pysat
pysat/_instrument.py
https://github.com/rstoneback/pysat/blob/4ae1afd80e15e4449397d39dce8c3e969c32c422/pysat/_instrument.py#L1409-L1823
def to_netcdf4(self, fname=None, base_instrument=None, epoch_name='Epoch', zlib=False, complevel=4, shuffle=True): """Stores loaded data into a netCDF4 file. Parameters ---------- fname : string full path to save instrument object to base_i...
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python
train
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modin-project/modin
modin/pandas/indexing.py
https://github.com/modin-project/modin/blob/5b77d242596560c646b8405340c9ce64acb183cb/modin/pandas/indexing.py#L127-L140
def _compute_ndim(row_loc, col_loc): """Compute the ndim of result from locators """ row_scaler = is_scalar(row_loc) col_scaler = is_scalar(col_loc) if row_scaler and col_scaler: ndim = 0 elif row_scaler ^ col_scaler: ndim = 1 else: ndim = 2 return ndim
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python
train
21.285714
openstack/networking-cisco
networking_cisco/apps/saf/server/services/firewall/native/fw_mgr.py
https://github.com/openstack/networking-cisco/blob/aa58a30aec25b86f9aa5952b0863045975debfa9/networking_cisco/apps/saf/server/services/firewall/native/fw_mgr.py#L455-L471
def _check_delete_fw(self, tenant_id, drvr_name): """Deletes the Firewall, if all conditioms are met. This function after modifying the DB with delete operation status, calls the routine to remove the fabric cfg from DB and unconfigure the device. """ fw_dict = self.fwid...
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Deletes the Firewall, if all conditioms are met. This function after modifying the DB with delete operation status, calls the routine to remove the fabric cfg from DB and unconfigure the device.
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python
train
43.941176
pyviz/param
param/parameterized.py
https://github.com/pyviz/param/blob/8f0dafa78defa883247b40635f96cc6d5c1b3481/param/parameterized.py#L152-L161
def get_occupied_slots(instance): """ Return a list of slots for which values have been set. (While a slot might be defined, if a value for that slot hasn't been set, then it's an AttributeError to request the slot's value.) """ return [slot for slot in get_all_slots(type(instance)) ...
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Return a list of slots for which values have been set. (While a slot might be defined, if a value for that slot hasn't been set, then it's an AttributeError to request the slot's value.)
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python
train
34.2
F5Networks/f5-common-python
f5-sdk-dist/build_pkgs.py
https://github.com/F5Networks/f5-common-python/blob/7e67d5acd757a60e3d5f8c88c534bd72208f5494/f5-sdk-dist/build_pkgs.py#L143-L168
def build_debian(config, os_versions, os_type='ubuntu'): """build_debian Builds for a specific debian operating system with os version specified. By default, it will use os_type='ubuntu' """ def build_pkg(config, os_type, os_version): result = _build_package(config, os_type, os_version) if...
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build_debian Builds for a specific debian operating system with os version specified. By default, it will use os_type='ubuntu'
[ "build_debian" ]
python
train
32.769231
docker/docker-py
docker/api/container.py
https://github.com/docker/docker-py/blob/613d6aad83acc9931ff2ecfd6a6c7bd8061dc125/docker/api/container.py#L973-L993
def remove_container(self, container, v=False, link=False, force=False): """ Remove a container. Similar to the ``docker rm`` command. Args: container (str): The container to remove v (bool): Remove the volumes associated with the container link (bool): Remov...
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Remove a container. Similar to the ``docker rm`` command. Args: container (str): The container to remove v (bool): Remove the volumes associated with the container link (bool): Remove the specified link and not the underlying container force (bool...
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python
train
37.714286
fr33jc/bang
bang/util.py
https://github.com/fr33jc/bang/blob/8f000713f88d2a9a8c1193b63ca10a6578560c16/bang/util.py#L149-L159
def add_if_unique(self, name): """ Returns ``True`` on success. Returns ``False`` if the name already exists in the namespace. """ with self.lock: if name not in self.names: self.names.append(name) return True return False
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Returns ``True`` on success. Returns ``False`` if the name already exists in the namespace.
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python
train
27.727273
SpriteLink/NIPAP
nipap-cli/nipap_cli/nipap_cli.py
https://github.com/SpriteLink/NIPAP/blob/f96069f11ab952d80b13cab06e0528f2d24b3de9/nipap-cli/nipap_cli/nipap_cli.py#L688-L842
def add_prefix(arg, opts, shell_opts): """ Add prefix to NIPAP """ # sanity checks if 'from-pool' not in opts and 'from-prefix' not in opts and 'prefix' not in opts: print("ERROR: 'prefix', 'from-pool' or 'from-prefix' must be specified.", file=sys.stderr) sys.exit(1) if len([opt f...
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Add prefix to NIPAP
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python
train
37.03871
sods/paramz
paramz/optimization/optimization.py
https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/optimization/optimization.py#L105-L132
def opt(self, x_init, f_fp=None, f=None, fp=None): """ Run the optimizer """ rcstrings = ['Converged', 'Maximum number of f evaluations reached', 'Error'] assert f_fp != None, "BFGS requires f_fp" opt_dict = {} if self.xtol is not None: print("WARNI...
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Run the optimizer
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python
train
42.821429
dmlc/xgboost
python-package/xgboost/sklearn.py
https://github.com/dmlc/xgboost/blob/253fdd8a42d5ec6b819788199584d27bf9ea6253/python-package/xgboost/sklearn.py#L302-L408
def fit(self, X, y, sample_weight=None, eval_set=None, eval_metric=None, early_stopping_rounds=None, verbose=True, xgb_model=None, sample_weight_eval_set=None, callbacks=None): # pylint: disable=missing-docstring,invalid-name,attribute-defined-outside-init """ Fit the gra...
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Fit the gradient boosting model Parameters ---------- X : array_like Feature matrix y : array_like Labels sample_weight : array_like instance weights eval_set : list, optional A list of (X, y) tuple pairs to use as a valida...
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python
train
45.775701
ansible/molecule
molecule/command/idempotence.py
https://github.com/ansible/molecule/blob/766dc35b0b0ce498cd5e3a62b40f828742d0d08c/molecule/command/idempotence.py#L92-L110
def _is_idempotent(self, output): """ Parses the output of the provisioning for changed and returns a bool. :param output: A string containing the output of the ansible run. :return: bool """ # Remove blank lines to make regex matches easier output = re.sub(r'\n...
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Parses the output of the provisioning for changed and returns a bool. :param output: A string containing the output of the ansible run. :return: bool
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python
train
27.842105
senaite/senaite.core
bika/lims/catalog/catalog_utilities.py
https://github.com/senaite/senaite.core/blob/7602ce2ea2f9e81eb34e20ce17b98a3e70713f85/bika/lims/catalog/catalog_utilities.py#L53-L76
def getCatalog(instance, field='UID'): """ Returns the catalog that stores objects of instance passed in type. If an object is indexed by more than one catalog, the first match will be returned. :param instance: A single object :type instance: ATContentType :returns: The first catalog that ...
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Returns the catalog that stores objects of instance passed in type. If an object is indexed by more than one catalog, the first match will be returned. :param instance: A single object :type instance: ATContentType :returns: The first catalog that stores the type of object passed in
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python
train
39.625
lago-project/lago
lago/log_utils.py
https://github.com/lago-project/lago/blob/5b8970f7687e063e4619066d5b8093ca997678c9/lago/log_utils.py#L265-L278
def get_tasks(self, thread_name): """ Args: thread_name (str): name of the thread to get the tasks for Returns: OrderedDict of str, Task: list of task names and log records for each for the given thread """ if thread_name not in self.tasks...
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Args: thread_name (str): name of the thread to get the tasks for Returns: OrderedDict of str, Task: list of task names and log records for each for the given thread
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python
train
33.5
ansible/ansible-runner
ansible_runner/utils.py
https://github.com/ansible/ansible-runner/blob/8ce485480a5d0b602428d9d64a752e06fb46cdb8/ansible_runner/utils.py#L39-L49
def isplaybook(obj): ''' Inspects the object and returns if it is a playbook Args: obj (object): The object to be inspected by this function Returns: boolean: True if the object is a list and False if it is not ''' return isinstance(obj, Iterable) and (not isinstance(obj, strin...
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python
train
32
emilydolson/avida-spatial-tools
avidaspatial/utils.py
https://github.com/emilydolson/avida-spatial-tools/blob/7beb0166ccefad5fa722215b030ac2a53d62b59e/avidaspatial/utils.py#L124-L133
def prepend_zeros_to_lists(ls): """ Takes a list of lists and appends 0s to the beggining of each sub_list until they are all the same length. Used for sign-extending binary numbers. """ longest = max([len(l) for l in ls]) for i in range(len(ls)): while len(ls[i]) < longest: ...
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Takes a list of lists and appends 0s to the beggining of each sub_list until they are all the same length. Used for sign-extending binary numbers.
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python
train
33.2
mrjoes/sockjs-tornado
sockjs/tornado/session.py
https://github.com/mrjoes/sockjs-tornado/blob/bd3a99b407f1181f054b3b1730f438dde375ca1c/sockjs/tornado/session.py#L241-L252
def on_delete(self, forced): """Session expiration callback `forced` If session item explicitly deleted, forced will be set to True. If item expired, will be set to False. """ # Do not remove connection if it was not forced and there's running connection ...
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Session expiration callback `forced` If session item explicitly deleted, forced will be set to True. If item expired, will be set to False.
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python
train
36.75
aestrivex/bctpy
bct/algorithms/distance.py
https://github.com/aestrivex/bctpy/blob/4cb0e759eb4a038750b07e23bd29958c400684b8/bct/algorithms/distance.py#L910-L1004
def search_information(adjacency, transform=None, has_memory=False): """ Calculates search information of `adjacency` Computes the amount of information (measured in bits) that a random walker needs to follow the shortest path between a given pair of nodes. Parameters ---------- adjacency ...
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Calculates search information of `adjacency` Computes the amount of information (measured in bits) that a random walker needs to follow the shortest path between a given pair of nodes. Parameters ---------- adjacency : (N x N) array_like Weighted/unweighted, direct/undirected connection we...
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python
train
42.084211
log2timeline/plaso
plaso/cli/helpers/elastic_output.py
https://github.com/log2timeline/plaso/blob/9c564698d2da3ffbe23607a3c54c0582ea18a6cc/plaso/cli/helpers/elastic_output.py#L86-L137
def ParseOptions(cls, options, output_module): """Parses and validates options. Args: options (argparse.Namespace): parser options. output_module (OutputModule): output module to configure. Raises: BadConfigObject: when the output module object is of the wrong type. BadConfigOption...
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Parses and validates options. Args: options (argparse.Namespace): parser options. output_module (OutputModule): output module to configure. Raises: BadConfigObject: when the output module object is of the wrong type. BadConfigOption: when a configuration parameter fails validation.
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python
train
41.423077
bitprophet/ssh
ssh/agent.py
https://github.com/bitprophet/ssh/blob/e8bdad4c82a50158a749233dca58c29e47c60b76/ssh/agent.py#L199-L219
def connect(self): """ Method automatically called by the run() method of the AgentProxyThread """ if ('SSH_AUTH_SOCK' in os.environ) and (sys.platform != 'win32'): conn = socket.socket(socket.AF_UNIX, socket.SOCK_STREAM) try: retry_on_signal(lambd...
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Method automatically called by the run() method of the AgentProxyThread
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python
train
36.190476
vaexio/vaex
packages/vaex-core/vaex/dataframe.py
https://github.com/vaexio/vaex/blob/a45b672f8287afca2ada8e36b74b604b9b28dd85/packages/vaex-core/vaex/dataframe.py#L4150-L4161
def dropna(self, drop_nan=True, drop_masked=True, column_names=None): """Create a shallow copy of a DataFrame, with filtering set using select_non_missing. :param drop_nan: drop rows when there is a NaN in any of the columns (will only affect float values) :param drop_masked: drop rows when the...
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Create a shallow copy of a DataFrame, with filtering set using select_non_missing. :param drop_nan: drop rows when there is a NaN in any of the columns (will only affect float values) :param drop_masked: drop rows when there is a masked value in any of the columns :param column_names: The colum...
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python
test
58.833333
Esri/ArcREST
src/arcrest/security/security.py
https://github.com/Esri/ArcREST/blob/ab240fde2b0200f61d4a5f6df033516e53f2f416/src/arcrest/security/security.py#L209-L213
def password(self, value): """gets/sets the current password""" if isinstance(value, str): self._password = value self._handler = None
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gets/sets the current password
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python
train
34
log2timeline/dftimewolf
dftimewolf/lib/utils.py
https://github.com/log2timeline/dftimewolf/blob/45f898476a288d73c4256ae8e3836a2a4848c0d7/dftimewolf/lib/utils.py#L21-L60
def import_args_from_dict(value, args, config): """Replaces some arguments by those specified by a key-value dictionary. This function will be recursively called on a dictionary looking for any value containing a "$" variable. If found, the value will be replaced by the attribute in "args" of the same name. ...
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Replaces some arguments by those specified by a key-value dictionary. This function will be recursively called on a dictionary looking for any value containing a "$" variable. If found, the value will be replaced by the attribute in "args" of the same name. It is used to load arguments from the CLI and any ex...
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python
train
40.85
Skype4Py/Skype4Py
Skype4Py/call.py
https://github.com/Skype4Py/Skype4Py/blob/c48d83f7034109fe46315d45a066126002c6e0d4/Skype4Py/call.py#L175-L188
def Join(self, Id): """Joins with another call to form a conference. :Parameters: Id : int Call Id of the other call to join to the conference. :return: Conference object. :rtype: `Conference` """ #self._Alter('JOIN_CONFERENCE', Id) reply =...
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Joins with another call to form a conference. :Parameters: Id : int Call Id of the other call to join to the conference. :return: Conference object. :rtype: `Conference`
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python
train
34.214286
ChargePoint/pydnp3
examples/outstation.py
https://github.com/ChargePoint/pydnp3/blob/5bcd8240d1fc0aa1579e71f2efcab63b4c61c547/examples/outstation.py#L201-L214
def apply_update(self, value, index): """ Record an opendnp3 data value (Analog, Binary, etc.) in the outstation's database. The data value gets sent to the Master as a side-effect. :param value: An instance of Analog, Binary, or another opendnp3 data value. :param inde...
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Record an opendnp3 data value (Analog, Binary, etc.) in the outstation's database. The data value gets sent to the Master as a side-effect. :param value: An instance of Analog, Binary, or another opendnp3 data value. :param index: (integer) Index of the data definition in the opendnp3 data...
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python
valid
48.285714
ChristopherRabotin/bungiesearch
bungiesearch/utils.py
https://github.com/ChristopherRabotin/bungiesearch/blob/13768342bc2698b214eb0003c2d113b6e273c30d/bungiesearch/utils.py#L15-L64
def update_index(model_items, model_name, action='index', bulk_size=100, num_docs=-1, start_date=None, end_date=None, refresh=True): ''' Updates the index for the provided model_items. :param model_items: a list of model_items (django Model instances, or proxy instances) which are to be indexed/updated or d...
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Updates the index for the provided model_items. :param model_items: a list of model_items (django Model instances, or proxy instances) which are to be indexed/updated or deleted. If action is 'index', the model_items must be serializable objects. If action is 'delete', the model_items must be primary keys c...
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python
train
63.08
fastavro/fastavro
fastavro/_read_py.py
https://github.com/fastavro/fastavro/blob/bafe826293e19eb93e77bbb0f6adfa059c7884b2/fastavro/_read_py.py#L345-L366
def read_union(fo, writer_schema, reader_schema=None): """A union is encoded by first writing a long value indicating the zero-based position within the union of the schema of its value. The value is then encoded per the indicated schema within the union. """ # schema resolution index = read_lo...
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A union is encoded by first writing a long value indicating the zero-based position within the union of the schema of its value. The value is then encoded per the indicated schema within the union.
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python
train
44.681818
codeforamerica/epa_python
epa/radinfo/radinfo.py
https://github.com/codeforamerica/epa_python/blob/62a53da62936bea8daa487a01a52b973e9062b2c/epa/radinfo/radinfo.py#L23-L29
def facility(self, column=None, value=None, **kwargs): """ Check information related to Radiation facilities. >>> RADInfo().facility('state_code', 'CA') """ return self._resolve_call('RAD_FACILITY', column, value, **kwargs)
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Check information related to Radiation facilities. >>> RADInfo().facility('state_code', 'CA')
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python
train
36.857143
twilio/twilio-python
twilio/rest/api/v2010/account/call/recording.py
https://github.com/twilio/twilio-python/blob/c867895f55dcc29f522e6e8b8868d0d18483132f/twilio/rest/api/v2010/account/call/recording.py#L248-L262
def get_instance(self, payload): """ Build an instance of RecordingInstance :param dict payload: Payload response from the API :returns: twilio.rest.api.v2010.account.call.recording.RecordingInstance :rtype: twilio.rest.api.v2010.account.call.recording.RecordingInstance ...
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Build an instance of RecordingInstance :param dict payload: Payload response from the API :returns: twilio.rest.api.v2010.account.call.recording.RecordingInstance :rtype: twilio.rest.api.v2010.account.call.recording.RecordingInstance
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python
train
33.733333
trolldbois/ctypeslib
ctypeslib/codegen/typehandler.py
https://github.com/trolldbois/ctypeslib/blob/2aeb1942a5a32a5cc798c287cd0d9e684a0181a8/ctypeslib/codegen/typehandler.py#L154-L187
def _array_handler(self, _cursor_type): """ Handles all array types. Resolves it's element type and makes a Array typedesc. """ # The element type has been previously declared # we need to get the canonical typedef, in some cases _type = _cursor_type.get_canonical...
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Handles all array types. Resolves it's element type and makes a Array typedesc.
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python
train
46.882353
MisterWil/abodepy
abodepy/__init__.py
https://github.com/MisterWil/abodepy/blob/6f84bb428fd1da98855f55083cd427bebbcc57ae/abodepy/__init__.py#L302-L313
def get_automation(self, automation_id, refresh=False): """Get a single automation.""" if self._automations is None: self.get_automations() refresh = False automation = self._automations.get(str(automation_id)) if automation and refresh: automation.r...
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Get a single automation.
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python
train
28.666667
reingart/pyafipws
utils.py
https://github.com/reingart/pyafipws/blob/ee87cfe4ac12285ab431df5fec257f103042d1ab/utils.py#L195-L210
def inicializar_y_capturar_excepciones_simple(func): "Decorador para inicializar y capturar errores (versión básica indep.)" @functools.wraps(func) def capturar_errores_wrapper(self, *args, **kwargs): self.inicializar() try: return func(self, *args, **kwargs) except: ...
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Decorador para inicializar y capturar errores (versión básica indep.)
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python
train
34.8125
PmagPy/PmagPy
programs/dmag_magic.py
https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/dmag_magic.py#L16-L187
def dmag_magic(in_file="measurements.txt", dir_path=".", input_dir_path="", spec_file="specimens.txt", samp_file="samples.txt", site_file="sites.txt", loc_file="locations.txt", plot_by="loc", LT="AF", norm=True, XLP="", save_plots=True, fmt="svg"): """ plots intensity decay ...
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plots intensity decay curves for demagnetization experiments Parameters ---------- in_file : str, default "measurements.txt" dir_path : str output directory, default "." input_dir_path : str input file directory (if different from dir_path), default "" spec_file : str in...
[ "plots", "intensity", "decay", "curves", "for", "demagnetization", "experiments" ]
python
train
40.023256
fastai/fastai
fastai/layers.py
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/layers.py#L221-L229
def icnr(x, scale=2, init=nn.init.kaiming_normal_): "ICNR init of `x`, with `scale` and `init` function." ni,nf,h,w = x.shape ni2 = int(ni/(scale**2)) k = init(torch.zeros([ni2,nf,h,w])).transpose(0, 1) k = k.contiguous().view(ni2, nf, -1) k = k.repeat(1, 1, scale**2) k = k.contiguous().view...
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ICNR init of `x`, with `scale` and `init` function.
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python
train
40.111111
jobovy/galpy
galpy/orbit/Orbit.py
https://github.com/jobovy/galpy/blob/9c5b9fe65d58835624dffe432be282060918ee08/galpy/orbit/Orbit.py#L2643-L2689
def vra(self,*args,**kwargs): """ NAME: vra PURPOSE: return velocity in right ascension (km/s) INPUT: t - (optional) time at which to get vra (can be Quantity) obs=[X,Y,Z,vx,vy,vz] - (optional) position and velocity of observer ...
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NAME: vra PURPOSE: return velocity in right ascension (km/s) INPUT: t - (optional) time at which to get vra (can be Quantity) obs=[X,Y,Z,vx,vy,vz] - (optional) position and velocity of observer in the Galactocentric frame ...
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python
train
32.978723
dropbox/stone
stone/frontend/parser.py
https://github.com/dropbox/stone/blob/2e95cbcd1c48e05cca68c919fd8d24adec6b0f58/stone/frontend/parser.py#L478-L480
def p_tag_ref(self, p): 'tag_ref : ID' p[0] = AstTagRef(self.path, p.lineno(1), p.lexpos(1), p[1])
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tag_ref : ID
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python
train
37.333333
h2oai/h2o-3
scripts/run.py
https://github.com/h2oai/h2o-3/blob/dd62aaa1e7f680a8b16ee14bc66b0fb5195c2ad8/scripts/run.py#L71-L77
def is_ipython_notebook(file_name): """ Return True if file_name matches a regexp for an ipython notebook. False otherwise. :param file_name: file to test """ if (not re.match("^.*checkpoint\.ipynb$", file_name)) and re.match("^.*\.ipynb$", file_name): return True return False
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Return True if file_name matches a regexp for an ipython notebook. False otherwise. :param file_name: file to test
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python
test
42.285714
rwl/pylon
pylon/io/excel.py
https://github.com/rwl/pylon/blob/916514255db1ae1661406f0283df756baf960d14/pylon/io/excel.py#L38-L43
def write(self, file_or_filename): """ Writes case data to file in Excel format. """ self.book = Workbook() self._write_data(None) self.book.save(file_or_filename)
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Writes case data to file in Excel format.
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python
train
33
datadesk/django-bakery
bakery/management/commands/__init__.py
https://github.com/datadesk/django-bakery/blob/e2feb13a66552a388fbcfaaacdd504bba08d3c69/bakery/management/commands/__init__.py#L8-L38
def get_s3_client(): """ A DRY place to make sure AWS credentials in settings override environment based credentials. Boto3 will fall back to: http://boto3.readthedocs.io/en/latest/guide/configuration.html """ session_kwargs = {} if hasattr(settings, 'AWS_ACCESS_KEY_ID'): session_kw...
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A DRY place to make sure AWS credentials in settings override environment based credentials. Boto3 will fall back to: http://boto3.readthedocs.io/en/latest/guide/configuration.html
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python
train
38.935484
shad7/tvdbapi_client
tvdbapi_client/api.py
https://github.com/shad7/tvdbapi_client/blob/edf1771184122f4db42af7fc087407a3e6a4e377/tvdbapi_client/api.py#L96-L100
def token_expired(self): """Provide access to flag indicating if token has expired.""" if self._token_timer is None: return True return timeutil.is_newer_than(self._token_timer, timeutil.ONE_HOUR)
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Provide access to flag indicating if token has expired.
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python
train
45.6
limix/numpy-sugar
numpy_sugar/linalg/qs.py
https://github.com/limix/numpy-sugar/blob/4bdfa26913135c76ef3cd542a332f4e5861e948b/numpy_sugar/linalg/qs.py#L5-L36
def economic_qs(K, epsilon=sqrt(finfo(float).eps)): r"""Economic eigen decomposition for symmetric matrices. A symmetric matrix ``K`` can be decomposed in :math:`\mathrm Q_0 \mathrm S_0 \mathrm Q_0^\intercal + \mathrm Q_1\ \mathrm S_1 \mathrm Q_1^ \intercal`, where :math:`\mathrm S_1` is a zero mat...
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r"""Economic eigen decomposition for symmetric matrices. A symmetric matrix ``K`` can be decomposed in :math:`\mathrm Q_0 \mathrm S_0 \mathrm Q_0^\intercal + \mathrm Q_1\ \mathrm S_1 \mathrm Q_1^ \intercal`, where :math:`\mathrm S_1` is a zero matrix with size determined by ``K``'s rank deficiency. ...
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python
train
29.0625
gwastro/pycbc
pycbc/workflow/jobsetup.py
https://github.com/gwastro/pycbc/blob/7a64cdd104d263f1b6ea0b01e6841837d05a4cb3/pycbc/workflow/jobsetup.py#L179-L322
def sngl_ifo_job_setup(workflow, ifo, out_files, curr_exe_job, science_segs, datafind_outs, parents=None, link_job_instance=None, allow_overlap=True, compatibility_mode=True): """ This function sets up a set of single ifo jobs. A basic overview of...
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This function sets up a set of single ifo jobs. A basic overview of how this works is as follows: * (1) Identify the length of data that each job needs to read in, and what part of that data the job is valid for. * START LOOPING OVER SCIENCE SEGMENTS * (2) Identify how many jobs are needed (if an...
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python
train
49.013889
bwohlberg/sporco
sporco/admm/cbpdn.py
https://github.com/bwohlberg/sporco/blob/8946a04331106f4e39904fbdf2dc7351900baa04/sporco/admm/cbpdn.py#L614-L620
def obfn_reg(self): """Compute regularisation term and contribution to objective function. """ rl1 = np.linalg.norm((self.wl1 * self.obfn_gvar()).ravel(), 1) return (self.lmbda*rl1, rl1)
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Compute regularisation term and contribution to objective function.
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python
train
31.571429
ellmetha/django-machina
machina/apps/forum_conversation/views.py
https://github.com/ellmetha/django-machina/blob/89ac083c1eaf1cfdeae6686ee094cc86362e8c69/machina/apps/forum_conversation/views.py#L314-L321
def get_post(self): """ Returns the considered post if applicable. """ pk = self.kwargs.get(self.post_pk_url_kwarg, None) if not pk: return if not hasattr(self, '_forum_post'): self._forum_post = get_object_or_404(Post, pk=pk) return self._forum_post
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Returns the considered post if applicable.
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python
train
38.375
rvswift/EB
EB/builder/splitter/splitter.py
https://github.com/rvswift/EB/blob/341880b79faf8147dc9fa6e90438531cd09fabcc/EB/builder/splitter/splitter.py#L190-L230
def read_csv(csvfile, options): """ Read csv and return molList, a list of mol objects """ # open file or exit name, ext = os.path.splitext(csvfile) try: if ext == '.gz': f = gzip.open(csvfile, 'rb') else: f = open(csvfile, 'rU') except IOError: pri...
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Read csv and return molList, a list of mol objects
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python
train
25.292683
echinopsii/net.echinopsii.ariane.community.cli.python3
ariane_clip3/directory.py
https://github.com/echinopsii/net.echinopsii.ariane.community.cli.python3/blob/0a7feddebf66fee4bef38d64f456d93a7e9fcd68/ariane_clip3/directory.py#L137-L157
def location_2_json(self): """ transform ariane_clip3 location object to Ariane server JSON obj :return: Ariane JSON obj """ LOGGER.debug("Location.location_2_json") json_obj = { 'locationID': self.id, 'locationName': self.name, 'locati...
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transform ariane_clip3 location object to Ariane server JSON obj :return: Ariane JSON obj
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python
train
38.095238
hazelcast/hazelcast-python-client
hazelcast/protocol/codec/ringbuffer_read_one_codec.py
https://github.com/hazelcast/hazelcast-python-client/blob/3f6639443c23d6d036aa343f8e094f052250d2c1/hazelcast/protocol/codec/ringbuffer_read_one_codec.py#L10-L15
def calculate_size(name, sequence): """ Calculates the request payload size""" data_size = 0 data_size += calculate_size_str(name) data_size += LONG_SIZE_IN_BYTES return data_size
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Calculates the request payload size
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python
train
32.333333
nwilming/ocupy
ocupy/saccade_geometry.py
https://github.com/nwilming/ocupy/blob/a0bd64f822576feaa502939d6bafd1183b237d16/ocupy/saccade_geometry.py#L51-L63
def saccadic_momentum_effect(durations, forward_angle, summary_stat=nanmean): """ Computes the mean fixation duration at forward angles. """ durations_per_da = np.nan * np.ones((len(e_angle) - 1,)) for i, (bo, b1) in enumerate(zip(e_angle[:-1], e_angle[1:])): idx...
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Computes the mean fixation duration at forward angles.
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python
train
38.923077
openpermissions/koi
koi/base.py
https://github.com/openpermissions/koi/blob/d721f8e1dfa8f07ad265d9dec32e8aaf80a9f281/koi/base.py#L120-L152
def get_json_body(self, required=None, validators=None): """Get JSON from the request body :param required: optionally provide a list of keys that should be in the JSON body (raises a 400 HTTPError if any are missing) :param validator: optionally provide a dictionary of items that shoul...
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Get JSON from the request body :param required: optionally provide a list of keys that should be in the JSON body (raises a 400 HTTPError if any are missing) :param validator: optionally provide a dictionary of items that should be in the body with a method that validates the item. ...
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python
train
38.151515
eqcorrscan/EQcorrscan
eqcorrscan/utils/plotting.py
https://github.com/eqcorrscan/EQcorrscan/blob/3121b4aca801ee5d38f56ca297ce1c0f9515d9ff/eqcorrscan/utils/plotting.py#L810-L959
def detection_multiplot(stream, template, times, streamcolour='k', templatecolour='r', size=(10.5, 7.5), **kwargs): """ Plot a stream of data with a template on top of it at detection times. :type stream: obspy.core.stream.Stream :param stream: Stream of data to be plotted as th...
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Plot a stream of data with a template on top of it at detection times. :type stream: obspy.core.stream.Stream :param stream: Stream of data to be plotted as the background. :type template: obspy.core.stream.Stream :param template: Template to be plotted on top of the base stream. :type times: list ...
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python
train
44.98
jbeluch/xbmcswift2
xbmcswift2/xbmcmixin.py
https://github.com/jbeluch/xbmcswift2/blob/0e7a3642499554edc8265fdf1ba6c5ee567daa78/xbmcswift2/xbmcmixin.py#L398-L418
def add_items(self, items): '''Adds ListItems to the XBMC interface. Each item in the provided list should either be instances of xbmcswift2.ListItem, or regular dictionaries that will be passed to xbmcswift2.ListItem.from_dict. Returns the list of ListItems. :param items: An it...
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Adds ListItems to the XBMC interface. Each item in the provided list should either be instances of xbmcswift2.ListItem, or regular dictionaries that will be passed to xbmcswift2.ListItem.from_dict. Returns the list of ListItems. :param items: An iterable of items where each item is eith...
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python
train
47.52381
Fantomas42/django-blog-zinnia
zinnia/views/mixins/templates.py
https://github.com/Fantomas42/django-blog-zinnia/blob/b4949304b104a8e1a7a7a0773cbfd024313c3a15/zinnia/views/mixins/templates.py#L81-L125
def get_template_names(self): """ Return a list of template names to be used for the view. """ year = self.get_archive_part_value('year') week = self.get_archive_part_value('week') month = self.get_archive_part_value('month') day = self.get_archive_part_value('day...
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Return a list of template names to be used for the view.
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python
train
42.311111
lcharleux/argiope
argiope/mesh.py
https://github.com/lcharleux/argiope/blob/8170e431362dc760589f7d141090fd133dece259/argiope/mesh.py#L508-L528
def node_set_to_surface(self, tag): """ Converts a node set to surface. """ # Create a dummy node with label 0 nodes = self.nodes.copy() dummy = nodes.iloc[0].copy() dummy["coords"] *= np.nan dummy["sets"] = True nodes.loc[0] = dummy # Getting element surfaces element_surface...
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Converts a node set to surface.
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python
test
35.809524
shoebot/shoebot
lib/graph/__init__.py
https://github.com/shoebot/shoebot/blob/d554c1765c1899fa25727c9fc6805d221585562b/lib/graph/__init__.py#L241-L257
def copy(self, empty=False): """ Create a copy of the graph (by default with nodes and edges). """ g = graph(self.layout.n, self.distance, self.layout.type) g.layout = self.layout.copy(g) g.styles = self.styles.copy(g) g.events = self.events.copy(g) ...
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Create a copy of the graph (by default with nodes and edges).
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python
valid
35.529412
SheffieldML/GPy
GPy/models/ss_gplvm.py
https://github.com/SheffieldML/GPy/blob/54c32d79d289d622fb18b898aee65a2a431d90cf/GPy/models/ss_gplvm.py#L249-L251
def get_X_gradients(self, X): """Get the gradients of the posterior distribution of X in its specific form.""" return X.mean.gradient, X.variance.gradient, X.binary_prob.gradient
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Get the gradients of the posterior distribution of X in its specific form.
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python
train
64
Gorialis/jishaku
jishaku/repl/inspections.py
https://github.com/Gorialis/jishaku/blob/fc7c479b9d510ede189a929c8aa6f7c8ef7f9a6e/jishaku/repl/inspections.py#L22-L45
def add_inspection(name): """ Add a Jishaku object inspection """ # create the real decorator def inspection_inner(func): """ Jishaku inspection decorator """ # pylint: disable=inconsistent-return-statements # create an encapsulated version of the inspectio...
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Add a Jishaku object inspection
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python
train
27.041667
annayqho/TheCannon
code/lamost/abundances/calc_gradient_spectra.py
https://github.com/annayqho/TheCannon/blob/8010a0a5dc9a3f9bb91efa79d7756f79b3c7ba9a/code/lamost/abundances/calc_gradient_spectra.py#L62-L94
def gen_cannon_grad_spec(choose, coeffs, pivots): """ Generate Cannon gradient spectra Parameters ---------- labels: default values for [teff, logg, feh, cfe, nfe, afe, ak] choose: val of cfe or nfe, whatever you're varying low: lowest val of cfe or nfe, whatever you're varying high: highes...
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Generate Cannon gradient spectra Parameters ---------- labels: default values for [teff, logg, feh, cfe, nfe, afe, ak] choose: val of cfe or nfe, whatever you're varying low: lowest val of cfe or nfe, whatever you're varying high: highest val of cfe or nfe, whatever you're varying
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python
train
39.787879
lambdamusic/Ontospy
ontospy/core/utils.py
https://github.com/lambdamusic/Ontospy/blob/eb46cb13792b2b87f21babdf976996318eec7571/ontospy/core/utils.py#L651-L674
def inferURILocalSymbol(aUri): """ From a URI returns a tuple (namespace, uri-last-bit) Eg from <'http://www.w3.org/2008/05/skos#something'> ==> ('something', 'http://www.w3.org/2008/05/skos') from <'http://www.w3.org/2003/01/geo/wgs84_pos'> we extract ==> ('wgs84_pos', 'http://www....
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From a URI returns a tuple (namespace, uri-last-bit) Eg from <'http://www.w3.org/2008/05/skos#something'> ==> ('something', 'http://www.w3.org/2008/05/skos') from <'http://www.w3.org/2003/01/geo/wgs84_pos'> we extract ==> ('wgs84_pos', 'http://www.w3.org/2003/01/geo/')
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python
train
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darvid/biome
src/biome/__init__.py
https://github.com/darvid/biome/blob/e1f1945165df9def31af42e5e13b623e1de97f01/src/biome/__init__.py#L130-L150
def get_dict(self, name, default=None): """Retrieves an environment variable value as a dictionary. Args: name (str): The case-insensitive, unprefixed variable name. default: If provided, a default value will be returned instead of throwing ``EnvironmentError``. ...
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python
train
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koehlma/pygrooveshark
src/grooveshark/classes/album.py
https://github.com/koehlma/pygrooveshark/blob/17673758ac12f54dc26ac879c30ea44f13b81057/src/grooveshark/classes/album.py#L95-L101
def export(self): """ Returns a dictionary with all album information. Use the :meth:`from_export` method to recreate the :class:`Album` object. """ return {'id' : self.id, 'name' : self.name, 'artist' : self._artist_name, 'artist_id' : self._artist_id, 'cover' : self._co...
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Returns a dictionary with all album information. Use the :meth:`from_export` method to recreate the :class:`Album` object.
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python
train
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GPflow/GPflow
gpflow/training/scipy_optimizer.py
https://github.com/GPflow/GPflow/blob/549394f0b1b0696c7b521a065e49bdae6e7acf27/gpflow/training/scipy_optimizer.py#L27-L52
def make_optimize_tensor(self, model, session=None, var_list=None, **kwargs): """ Make SciPy optimization tensor. The `make_optimize_tensor` method builds optimization tensor and initializes all necessary variables created by optimizer. :param model: GPflow model. ...
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python
train
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jaywink/federation
federation/utils/diaspora.py
https://github.com/jaywink/federation/blob/59d31bb37e662891dbea72c1dee05dc53146c78b/federation/utils/diaspora.py#L235-L238
def get_private_endpoint(id: str, guid: str) -> str: """Get remote endpoint for delivering private payloads.""" _username, domain = id.split("@") return "https://%s/receive/users/%s" % (domain, guid)
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python
train
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redcanari/canari3
src/canari/entrypoints.py
https://github.com/redcanari/canari3/blob/322d2bae4b49ac728229f418b786b51fcc227352/src/canari/entrypoints.py#L193-L196
def load_plume_package(package, plume_dir, accept_defaults): """Loads a canari package into Plume.""" from canari.commands.load_plume_package import load_plume_package load_plume_package(package, plume_dir, accept_defaults)
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python
train
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spulec/freezegun
freezegun/api.py
https://github.com/spulec/freezegun/blob/9347d133f33f675c87bb0569d70d9d95abef737f/freezegun/api.py#L397-L413
def _parse_time_to_freeze(time_to_freeze_str): """Parses all the possible inputs for freeze_time :returns: a naive ``datetime.datetime`` object """ if time_to_freeze_str is None: time_to_freeze_str = datetime.datetime.utcnow() if isinstance(time_to_freeze_str, datetime.datetime): ti...
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Parses all the possible inputs for freeze_time :returns: a naive ``datetime.datetime`` object
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python
train
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