repo stringlengths 7 54 | path stringlengths 4 192 | url stringlengths 87 284 | code stringlengths 78 104k | code_tokens list | docstring stringlengths 1 46.9k | docstring_tokens list | language stringclasses 1
value | partition stringclasses 3
values |
|---|---|---|---|---|---|---|---|---|
tadashi-aikawa/owlmixin | owlmixin/owlcollections.py | https://github.com/tadashi-aikawa/owlmixin/blob/7c4a042c3008abddc56a8e8e55ae930d276071f5/owlmixin/owlcollections.py#L50-L61 | def emap(self, func):
"""
:param func:
:type func: T, int -> U
:rtype: TList[U]
Usage:
>>> TList([10, 20, 30, 40, 50]).emap(lambda x, i: (x+1, i))
[(11, 0), (21, 1), (31, 2), (41, 3), (51, 4)]
"""
return TList([func(x, i) for i, x in enum... | [
"def",
"emap",
"(",
"self",
",",
"func",
")",
":",
"return",
"TList",
"(",
"[",
"func",
"(",
"x",
",",
"i",
")",
"for",
"i",
",",
"x",
"in",
"enumerate",
"(",
"self",
")",
"]",
")"
] | :param func:
:type func: T, int -> U
:rtype: TList[U]
Usage:
>>> TList([10, 20, 30, 40, 50]).emap(lambda x, i: (x+1, i))
[(11, 0), (21, 1), (31, 2), (41, 3), (51, 4)] | [
":",
"param",
"func",
":",
":",
"type",
"func",
":",
"T",
"int",
"-",
">",
"U",
":",
"rtype",
":",
"TList",
"[",
"U",
"]"
] | python | train |
Clinical-Genomics/scout | scout/utils/date.py | https://github.com/Clinical-Genomics/scout/blob/90a551e2e1653a319e654c2405c2866f93d0ebb9/scout/utils/date.py#L19-L50 | def get_date(date, date_format = None):
"""Return a datetime object if there is a valid date
Raise exception if date is not valid
Return todays date if no date where added
Args:
date(str)
date_format(str)
Returns:
date_obj(datetime.datetime)
... | [
"def",
"get_date",
"(",
"date",
",",
"date_format",
"=",
"None",
")",
":",
"date_obj",
"=",
"datetime",
".",
"datetime",
".",
"now",
"(",
")",
"if",
"date",
":",
"if",
"date_format",
":",
"date_obj",
"=",
"datetime",
".",
"datetime",
".",
"strptime",
"... | Return a datetime object if there is a valid date
Raise exception if date is not valid
Return todays date if no date where added
Args:
date(str)
date_format(str)
Returns:
date_obj(datetime.datetime) | [
"Return",
"a",
"datetime",
"object",
"if",
"there",
"is",
"a",
"valid",
"date"
] | python | test |
AshleySetter/optoanalysis | optoanalysis/optoanalysis/Saleae/Saleae.py | https://github.com/AshleySetter/optoanalysis/blob/9d390acc834d70024d47b574aea14189a5a5714e/optoanalysis/optoanalysis/Saleae/Saleae.py#L4-L7 | def get_chunks(Array, Chunksize):
"""Generator that yields chunks of size ChunkSize"""
for i in range(0, len(Array), Chunksize):
yield Array[i:i + Chunksize] | [
"def",
"get_chunks",
"(",
"Array",
",",
"Chunksize",
")",
":",
"for",
"i",
"in",
"range",
"(",
"0",
",",
"len",
"(",
"Array",
")",
",",
"Chunksize",
")",
":",
"yield",
"Array",
"[",
"i",
":",
"i",
"+",
"Chunksize",
"]"
] | Generator that yields chunks of size ChunkSize | [
"Generator",
"that",
"yields",
"chunks",
"of",
"size",
"ChunkSize"
] | python | train |
ssato/python-anyconfig | src/anyconfig/backend/yaml/ruamel_yaml.py | https://github.com/ssato/python-anyconfig/blob/f2f4fb8d8e232aadea866c202e1dd7a5967e2877/src/anyconfig/backend/yaml/ruamel_yaml.py#L73-L93 | def yml_fnc(fname, *args, **options):
"""
:param fname:
"load" or "dump", not checked but it should be OK.
see also :func:`yml_load` and :func:`yml_dump`
:param args: [stream] for load or [cnf, stream] for dump
:param options: keyword args may contain "ac_safe" to load/dump safely
""... | [
"def",
"yml_fnc",
"(",
"fname",
",",
"*",
"args",
",",
"*",
"*",
"options",
")",
":",
"options",
"=",
"common",
".",
"filter_from_options",
"(",
"\"ac_dict\"",
",",
"options",
")",
"if",
"\"ac_safe\"",
"in",
"options",
":",
"options",
"[",
"\"typ\"",
"]"... | :param fname:
"load" or "dump", not checked but it should be OK.
see also :func:`yml_load` and :func:`yml_dump`
:param args: [stream] for load or [cnf, stream] for dump
:param options: keyword args may contain "ac_safe" to load/dump safely | [
":",
"param",
"fname",
":",
"load",
"or",
"dump",
"not",
"checked",
"but",
"it",
"should",
"be",
"OK",
".",
"see",
"also",
":",
"func",
":",
"yml_load",
"and",
":",
"func",
":",
"yml_dump",
":",
"param",
"args",
":",
"[",
"stream",
"]",
"for",
"loa... | python | train |
timkpaine/pyEX | pyEX/stocks.py | https://github.com/timkpaine/pyEX/blob/91cf751dafdb208a0c8b5377945e5808b99f94ba/pyEX/stocks.py#L992-L1008 | def keyStatsDF(symbol, token='', version=''):
'''Key Stats about company
https://iexcloud.io/docs/api/#key-stats
8am, 9am ET
Args:
symbol (string); Ticker to request
token (string); Access token
version (string); API version
Returns:
DataFrame: result
'''
s... | [
"def",
"keyStatsDF",
"(",
"symbol",
",",
"token",
"=",
"''",
",",
"version",
"=",
"''",
")",
":",
"s",
"=",
"keyStats",
"(",
"symbol",
",",
"token",
",",
"version",
")",
"df",
"=",
"_statsToDF",
"(",
"s",
")",
"return",
"df"
] | Key Stats about company
https://iexcloud.io/docs/api/#key-stats
8am, 9am ET
Args:
symbol (string); Ticker to request
token (string); Access token
version (string); API version
Returns:
DataFrame: result | [
"Key",
"Stats",
"about",
"company"
] | python | valid |
wbond/ocspbuilder | ocspbuilder/__init__.py | https://github.com/wbond/ocspbuilder/blob/0b853af4ed6bf8bded1ddf235e9e64ea78708456/ocspbuilder/__init__.py#L627-L650 | def certificate_issuer(self, value):
"""
An asn1crypto.x509.Certificate object of the issuer of the certificate.
This should only be set if the OCSP responder is not the issuer of
the certificate, but instead a special certificate only for OCSP
responses.
"""
if ... | [
"def",
"certificate_issuer",
"(",
"self",
",",
"value",
")",
":",
"if",
"value",
"is",
"not",
"None",
":",
"is_oscrypto",
"=",
"isinstance",
"(",
"value",
",",
"asymmetric",
".",
"Certificate",
")",
"if",
"not",
"is_oscrypto",
"and",
"not",
"isinstance",
"... | An asn1crypto.x509.Certificate object of the issuer of the certificate.
This should only be set if the OCSP responder is not the issuer of
the certificate, but instead a special certificate only for OCSP
responses. | [
"An",
"asn1crypto",
".",
"x509",
".",
"Certificate",
"object",
"of",
"the",
"issuer",
"of",
"the",
"certificate",
".",
"This",
"should",
"only",
"be",
"set",
"if",
"the",
"OCSP",
"responder",
"is",
"not",
"the",
"issuer",
"of",
"the",
"certificate",
"but",... | python | train |
NASA-AMMOS/AIT-Core | ait/core/cfg.py | https://github.com/NASA-AMMOS/AIT-Core/blob/9d85bd9c738e7a6a6fbdff672bea708238b02a3a/ait/core/cfg.py#L153-L173 | def loadYAML (filename=None, data=None):
"""Loads either the given YAML configuration file or YAML data.
Returns None if there was an error reading from the configuration
file and logs an error message via ait.core.log.error().
"""
config = None
try:
if filename:
data = ope... | [
"def",
"loadYAML",
"(",
"filename",
"=",
"None",
",",
"data",
"=",
"None",
")",
":",
"config",
"=",
"None",
"try",
":",
"if",
"filename",
":",
"data",
"=",
"open",
"(",
"filename",
",",
"'rt'",
")",
"config",
"=",
"yaml",
".",
"load",
"(",
"data",
... | Loads either the given YAML configuration file or YAML data.
Returns None if there was an error reading from the configuration
file and logs an error message via ait.core.log.error(). | [
"Loads",
"either",
"the",
"given",
"YAML",
"configuration",
"file",
"or",
"YAML",
"data",
"."
] | python | train |
vtkiorg/vtki | vtki/filters.py | https://github.com/vtkiorg/vtki/blob/5ccad7ae6d64a03e9594c9c7474c8aab3eb22dd1/vtki/filters.py#L878-L894 | def point_data_to_cell_data(dataset, pass_point_data=False):
"""Transforms point data (i.e., data specified per node) into cell data
(i.e., data specified within cells).
Optionally, the input point data can be passed through to the output.
See aslo: :func:`vtki.DataSetFilters.cell_data_... | [
"def",
"point_data_to_cell_data",
"(",
"dataset",
",",
"pass_point_data",
"=",
"False",
")",
":",
"alg",
"=",
"vtk",
".",
"vtkPointDataToCellData",
"(",
")",
"alg",
".",
"SetInputDataObject",
"(",
"dataset",
")",
"alg",
".",
"SetPassPointData",
"(",
"pass_point_... | Transforms point data (i.e., data specified per node) into cell data
(i.e., data specified within cells).
Optionally, the input point data can be passed through to the output.
See aslo: :func:`vtki.DataSetFilters.cell_data_to_point_data`
Parameters
----------
pass_point... | [
"Transforms",
"point",
"data",
"(",
"i",
".",
"e",
".",
"data",
"specified",
"per",
"node",
")",
"into",
"cell",
"data",
"(",
"i",
".",
"e",
".",
"data",
"specified",
"within",
"cells",
")",
".",
"Optionally",
"the",
"input",
"point",
"data",
"can",
... | python | train |
CGATOxford/UMI-tools | umi_tools/network.py | https://github.com/CGATOxford/UMI-tools/blob/c4b5d84aac391d59916d294f8f4f8f5378abcfbe/umi_tools/network.py#L249-L269 | def _group_directional(self, clusters, adj_list, counts):
''' return groups for directional method'''
observed = set()
groups = []
for cluster in clusters:
if len(cluster) == 1:
groups.append(list(cluster))
observed.update(cluster)
... | [
"def",
"_group_directional",
"(",
"self",
",",
"clusters",
",",
"adj_list",
",",
"counts",
")",
":",
"observed",
"=",
"set",
"(",
")",
"groups",
"=",
"[",
"]",
"for",
"cluster",
"in",
"clusters",
":",
"if",
"len",
"(",
"cluster",
")",
"==",
"1",
":",... | return groups for directional method | [
"return",
"groups",
"for",
"directional",
"method"
] | python | train |
cggh/scikit-allel | allel/stats/diversity.py | https://github.com/cggh/scikit-allel/blob/3c979a57a100240ba959dd13f98839349530f215/allel/stats/diversity.py#L492-L590 | def windowed_divergence(pos, ac1, ac2, size=None, start=None, stop=None,
step=None, windows=None, is_accessible=None,
fill=np.nan):
"""Estimate nucleotide divergence between two populations in windows
over a single chromosome/contig.
Parameters
----------... | [
"def",
"windowed_divergence",
"(",
"pos",
",",
"ac1",
",",
"ac2",
",",
"size",
"=",
"None",
",",
"start",
"=",
"None",
",",
"stop",
"=",
"None",
",",
"step",
"=",
"None",
",",
"windows",
"=",
"None",
",",
"is_accessible",
"=",
"None",
",",
"fill",
... | Estimate nucleotide divergence between two populations in windows
over a single chromosome/contig.
Parameters
----------
pos : array_like, int, shape (n_items,)
Variant positions, using 1-based coordinates, in ascending order.
ac1 : array_like, int, shape (n_variants, n_alleles)
Al... | [
"Estimate",
"nucleotide",
"divergence",
"between",
"two",
"populations",
"in",
"windows",
"over",
"a",
"single",
"chromosome",
"/",
"contig",
"."
] | python | train |
Gandi/gandi.cli | gandi/cli/core/params.py | https://github.com/Gandi/gandi.cli/blob/6ee5b8fc8ec44b0a6c232043ca610606ad8f693d/gandi/cli/core/params.py#L28-L39 | def choices(self):
""" Retrieve choices from API if possible"""
if not self._choices:
gandi = self.gandi or GandiContextHelper()
self._choices = self._get_choices(gandi)
if not self._choices:
api = gandi.get_api_connector()
gandi.echo('... | [
"def",
"choices",
"(",
"self",
")",
":",
"if",
"not",
"self",
".",
"_choices",
":",
"gandi",
"=",
"self",
".",
"gandi",
"or",
"GandiContextHelper",
"(",
")",
"self",
".",
"_choices",
"=",
"self",
".",
"_get_choices",
"(",
"gandi",
")",
"if",
"not",
"... | Retrieve choices from API if possible | [
"Retrieve",
"choices",
"from",
"API",
"if",
"possible"
] | python | train |
gc3-uzh-ch/elasticluster | elasticluster/cluster.py | https://github.com/gc3-uzh-ch/elasticluster/blob/e6345633308c76de13b889417df572815aabe744/elasticluster/cluster.py#L1301-L1319 | def start(self):
"""
Start the node on the cloud using the given instance properties.
This method is non-blocking: as soon as the node id is returned from
the cloud provider, it will return. The `is_alive`:meth: and
`update_ips`:meth: methods should be used to further gather det... | [
"def",
"start",
"(",
"self",
")",
":",
"log",
".",
"info",
"(",
"\"Starting node `%s` from image `%s` with flavor %s ...\"",
",",
"self",
".",
"name",
",",
"self",
".",
"image_id",
",",
"self",
".",
"flavor",
")",
"self",
".",
"instance_id",
"=",
"self",
"."... | Start the node on the cloud using the given instance properties.
This method is non-blocking: as soon as the node id is returned from
the cloud provider, it will return. The `is_alive`:meth: and
`update_ips`:meth: methods should be used to further gather details
about the state of the n... | [
"Start",
"the",
"node",
"on",
"the",
"cloud",
"using",
"the",
"given",
"instance",
"properties",
"."
] | python | train |
inveniosoftware-contrib/invenio-groups | examples/app.py | https://github.com/inveniosoftware-contrib/invenio-groups/blob/109481d6b02701db00b72223dd4a65e167c589a6/examples/app.py#L83-L103 | def users():
"""Load default users and groups."""
from invenio_groups.models import Group, Membership, \
PrivacyPolicy, SubscriptionPolicy
admin = accounts.datastore.create_user(
email='admin@inveniosoftware.org',
password=encrypt_password('123456'),
active=True,
)
r... | [
"def",
"users",
"(",
")",
":",
"from",
"invenio_groups",
".",
"models",
"import",
"Group",
",",
"Membership",
",",
"PrivacyPolicy",
",",
"SubscriptionPolicy",
"admin",
"=",
"accounts",
".",
"datastore",
".",
"create_user",
"(",
"email",
"=",
"'admin@inveniosoftw... | Load default users and groups. | [
"Load",
"default",
"users",
"and",
"groups",
"."
] | python | valid |
ejeschke/ginga | ginga/rv/Control.py | https://github.com/ejeschke/ginga/blob/a78c893ec6f37a837de851947e9bb4625c597915/ginga/rv/Control.py#L1867-L1889 | def make_viewer(self, vname, channel):
"""Make a viewer whose type name is `vname` and add it to `channel`.
"""
if vname not in self.viewer_db:
raise ValueError("I don't know how to build a '%s' viewer" % (
vname))
stk_w = channel.widget
bnch = self.... | [
"def",
"make_viewer",
"(",
"self",
",",
"vname",
",",
"channel",
")",
":",
"if",
"vname",
"not",
"in",
"self",
".",
"viewer_db",
":",
"raise",
"ValueError",
"(",
"\"I don't know how to build a '%s' viewer\"",
"%",
"(",
"vname",
")",
")",
"stk_w",
"=",
"chann... | Make a viewer whose type name is `vname` and add it to `channel`. | [
"Make",
"a",
"viewer",
"whose",
"type",
"name",
"is",
"vname",
"and",
"add",
"it",
"to",
"channel",
"."
] | python | train |
tensorflow/tensor2tensor | tensor2tensor/data_generators/generator_utils.py | https://github.com/tensorflow/tensor2tensor/blob/272500b6efe353aeb638d2745ed56e519462ca31/tensor2tensor/data_generators/generator_utils.py#L65-L89 | def generate_files_distributed(generator,
output_name,
output_dir,
num_shards=1,
max_cases=None,
task_id=0):
"""generate_files but with a single writer writing to ... | [
"def",
"generate_files_distributed",
"(",
"generator",
",",
"output_name",
",",
"output_dir",
",",
"num_shards",
"=",
"1",
",",
"max_cases",
"=",
"None",
",",
"task_id",
"=",
"0",
")",
":",
"assert",
"task_id",
"<",
"num_shards",
"output_filename",
"=",
"shard... | generate_files but with a single writer writing to shard task_id. | [
"generate_files",
"but",
"with",
"a",
"single",
"writer",
"writing",
"to",
"shard",
"task_id",
"."
] | python | train |
NASA-AMMOS/AIT-Core | ait/core/api.py | https://github.com/NASA-AMMOS/AIT-Core/blob/9d85bd9c738e7a6a6fbdff672bea708238b02a3a/ait/core/api.py#L307-L315 | def extendleft(self, iterable):
"""Extend the left side of this GeventDeque by appending
elements from the iterable argument. Note, the series of left
appends results in reversing the order of elements in the
iterable argument.
"""
self._deque.extendleft(iterable)
... | [
"def",
"extendleft",
"(",
"self",
",",
"iterable",
")",
":",
"self",
".",
"_deque",
".",
"extendleft",
"(",
"iterable",
")",
"if",
"len",
"(",
"self",
".",
"_deque",
")",
">",
"0",
":",
"self",
".",
"notEmpty",
".",
"set",
"(",
")"
] | Extend the left side of this GeventDeque by appending
elements from the iterable argument. Note, the series of left
appends results in reversing the order of elements in the
iterable argument. | [
"Extend",
"the",
"left",
"side",
"of",
"this",
"GeventDeque",
"by",
"appending",
"elements",
"from",
"the",
"iterable",
"argument",
".",
"Note",
"the",
"series",
"of",
"left",
"appends",
"results",
"in",
"reversing",
"the",
"order",
"of",
"elements",
"in",
"... | python | train |
tradenity/python-sdk | tradenity/resources/return_line_item.py | https://github.com/tradenity/python-sdk/blob/d13fbe23f4d6ff22554c6d8d2deaf209371adaf1/tradenity/resources/return_line_item.py#L748-L770 | def list_all_return_line_items(cls, **kwargs):
"""List ReturnLineItems
Return a list of ReturnLineItems
This method makes a synchronous HTTP request by default. To make an
asynchronous HTTP request, please pass async=True
>>> thread = api.list_all_return_line_items(async=True)
... | [
"def",
"list_all_return_line_items",
"(",
"cls",
",",
"*",
"*",
"kwargs",
")",
":",
"kwargs",
"[",
"'_return_http_data_only'",
"]",
"=",
"True",
"if",
"kwargs",
".",
"get",
"(",
"'async'",
")",
":",
"return",
"cls",
".",
"_list_all_return_line_items_with_http_in... | List ReturnLineItems
Return a list of ReturnLineItems
This method makes a synchronous HTTP request by default. To make an
asynchronous HTTP request, please pass async=True
>>> thread = api.list_all_return_line_items(async=True)
>>> result = thread.get()
:param async boo... | [
"List",
"ReturnLineItems"
] | python | train |
python-gitlab/python-gitlab | gitlab/mixins.py | https://github.com/python-gitlab/python-gitlab/blob/16de1b03fde3dbbe8f851614dd1d8c09de102fe5/gitlab/mixins.py#L575-L595 | def participants(self, **kwargs):
"""List the participants.
Args:
all (bool): If True, return all the items, without pagination
per_page (int): Number of items to retrieve per request
page (int): ID of the page to return (starts with page 1)
as_list (bool... | [
"def",
"participants",
"(",
"self",
",",
"*",
"*",
"kwargs",
")",
":",
"path",
"=",
"'%s/%s/participants'",
"%",
"(",
"self",
".",
"manager",
".",
"path",
",",
"self",
".",
"get_id",
"(",
")",
")",
"return",
"self",
".",
"manager",
".",
"gitlab",
"."... | List the participants.
Args:
all (bool): If True, return all the items, without pagination
per_page (int): Number of items to retrieve per request
page (int): ID of the page to return (starts with page 1)
as_list (bool): If set to False and no pagination option i... | [
"List",
"the",
"participants",
"."
] | python | train |
aleju/imgaug | imgaug/augmentables/bbs.py | https://github.com/aleju/imgaug/blob/786be74aa855513840113ea523c5df495dc6a8af/imgaug/augmentables/bbs.py#L718-L736 | def to_keypoints(self):
"""
Convert the corners of the bounding box to keypoints (clockwise, starting at top left).
Returns
-------
list of imgaug.Keypoint
Corners of the bounding box as keypoints.
"""
# TODO get rid of this deferred import
f... | [
"def",
"to_keypoints",
"(",
"self",
")",
":",
"# TODO get rid of this deferred import",
"from",
"imgaug",
".",
"augmentables",
".",
"kps",
"import",
"Keypoint",
"return",
"[",
"Keypoint",
"(",
"x",
"=",
"self",
".",
"x1",
",",
"y",
"=",
"self",
".",
"y1",
... | Convert the corners of the bounding box to keypoints (clockwise, starting at top left).
Returns
-------
list of imgaug.Keypoint
Corners of the bounding box as keypoints. | [
"Convert",
"the",
"corners",
"of",
"the",
"bounding",
"box",
"to",
"keypoints",
"(",
"clockwise",
"starting",
"at",
"top",
"left",
")",
"."
] | python | valid |
manns/pyspread | pyspread/src/gui/_grid.py | https://github.com/manns/pyspread/blob/0e2fd44c2e0f06605efc3058c20a43a8c1f9e7e0/pyspread/src/gui/_grid.py#L1440-L1458 | def OnResizeGridDialog(self, event):
"""Resizes current grid by appending/deleting rows, cols and tables"""
# Get grid dimensions
new_shape = self.interfaces.get_dimensions_from_user(no_dim=3)
if new_shape is None:
return
with undo.group(_("Resize grid")):
... | [
"def",
"OnResizeGridDialog",
"(",
"self",
",",
"event",
")",
":",
"# Get grid dimensions",
"new_shape",
"=",
"self",
".",
"interfaces",
".",
"get_dimensions_from_user",
"(",
"no_dim",
"=",
"3",
")",
"if",
"new_shape",
"is",
"None",
":",
"return",
"with",
"undo... | Resizes current grid by appending/deleting rows, cols and tables | [
"Resizes",
"current",
"grid",
"by",
"appending",
"/",
"deleting",
"rows",
"cols",
"and",
"tables"
] | python | train |
NLeSC/noodles | noodles/prov/sqlite.py | https://github.com/NLeSC/noodles/blob/3759e24e6e54a3a1a364431309dbb1061f617c04/noodles/prov/sqlite.py#L309-L314 | def job_exists(self, prov):
"""Check if a job exists in the database."""
with self.lock:
self.cur.execute('select * from "jobs" where "prov" = ?;', (prov,))
rec = self.cur.fetchone()
return rec is not None | [
"def",
"job_exists",
"(",
"self",
",",
"prov",
")",
":",
"with",
"self",
".",
"lock",
":",
"self",
".",
"cur",
".",
"execute",
"(",
"'select * from \"jobs\" where \"prov\" = ?;'",
",",
"(",
"prov",
",",
")",
")",
"rec",
"=",
"self",
".",
"cur",
".",
"f... | Check if a job exists in the database. | [
"Check",
"if",
"a",
"job",
"exists",
"in",
"the",
"database",
"."
] | python | train |
codelv/enaml-native | src/enamlnative/android/android_utils.py | https://github.com/codelv/enaml-native/blob/c33986e9eda468c508806e0a3e73c771401e5718/src/enamlnative/android/android_utils.py#L56-L78 | def toggle_keyboard(cls, flag=HIDE_IMPLICIT_ONLY):
""" Toggle the keyboard on and off
Parameters
----------
flag: int
Flag to send to toggleSoftInput
Returns
--------
result: future
Resolves when the togg... | [
"def",
"toggle_keyboard",
"(",
"cls",
",",
"flag",
"=",
"HIDE_IMPLICIT_ONLY",
")",
":",
"app",
"=",
"AndroidApplication",
".",
"instance",
"(",
")",
"f",
"=",
"app",
".",
"create_future",
"(",
")",
"def",
"on_ready",
"(",
"ims",
")",
":",
"ims",
".",
"... | Toggle the keyboard on and off
Parameters
----------
flag: int
Flag to send to toggleSoftInput
Returns
--------
result: future
Resolves when the toggle is complete | [
"Toggle",
"the",
"keyboard",
"on",
"and",
"off",
"Parameters",
"----------",
"flag",
":",
"int",
"Flag",
"to",
"send",
"to",
"toggleSoftInput",
"Returns",
"--------",
"result",
":",
"future",
"Resolves",
"when",
"the",
"toggle",
"is",
"complete"
] | python | train |
barryp/py-amqplib | amqplib/client_0_8/channel.py | https://github.com/barryp/py-amqplib/blob/2b3a47de34b4712c111d0a55d7ff109dffc2a7b2/amqplib/client_0_8/channel.py#L675-L844 | def exchange_declare(self, exchange, type, passive=False, durable=False,
auto_delete=True, internal=False, nowait=False,
arguments=None, ticket=None):
"""
declare exchange, create if needed
This method creates an exchange if it does not already exist,
and if the exchange... | [
"def",
"exchange_declare",
"(",
"self",
",",
"exchange",
",",
"type",
",",
"passive",
"=",
"False",
",",
"durable",
"=",
"False",
",",
"auto_delete",
"=",
"True",
",",
"internal",
"=",
"False",
",",
"nowait",
"=",
"False",
",",
"arguments",
"=",
"None",
... | declare exchange, create if needed
This method creates an exchange if it does not already exist,
and if the exchange exists, verifies that it is of the correct
and expected class.
RULE:
The server SHOULD support a minimum of 16 exchanges per
virtual host and id... | [
"declare",
"exchange",
"create",
"if",
"needed"
] | python | train |
monarch-initiative/dipper | dipper/utils/DipperUtil.py | https://github.com/monarch-initiative/dipper/blob/24cc80db355bbe15776edc5c7b41e0886959ba41/dipper/utils/DipperUtil.py#L111-L143 | def is_omim_disease(gene_id):
"""
Process omim equivalencies by examining the monarch ontology scigraph
As an alternative we could examine mondo.owl, since the ontology
scigraph imports the output of this script which creates an odd circular
dependency (even though we're querying... | [
"def",
"is_omim_disease",
"(",
"gene_id",
")",
":",
"SCIGRAPH_BASE",
"=",
"'https://scigraph-ontology-dev.monarchinitiative.org/scigraph/graph/'",
"session",
"=",
"requests",
".",
"Session",
"(",
")",
"adapter",
"=",
"requests",
".",
"adapters",
".",
"HTTPAdapter",
"(",... | Process omim equivalencies by examining the monarch ontology scigraph
As an alternative we could examine mondo.owl, since the ontology
scigraph imports the output of this script which creates an odd circular
dependency (even though we're querying mondo.owl through scigraph)
:param graph... | [
"Process",
"omim",
"equivalencies",
"by",
"examining",
"the",
"monarch",
"ontology",
"scigraph",
"As",
"an",
"alternative",
"we",
"could",
"examine",
"mondo",
".",
"owl",
"since",
"the",
"ontology",
"scigraph",
"imports",
"the",
"output",
"of",
"this",
"script",... | python | train |
trec-kba/streamcorpus-pipeline | streamcorpus_pipeline/_spinn3r_feed_storage.py | https://github.com/trec-kba/streamcorpus-pipeline/blob/8bb82ea1beb83c6b40ed03fa1659df2897c2292a/streamcorpus_pipeline/_spinn3r_feed_storage.py#L301-L332 | def _make_content_item(node, mime_type=None, alternate_data=None):
"""Create a ContentItem from a node in the spinn3r data tree.
The ContentItem is created with raw data set to ``node.data``,
decompressed if the node's encoding is 'zlib', and UTF-8
normalized, with a MIME type from ``node.mime_type``.
... | [
"def",
"_make_content_item",
"(",
"node",
",",
"mime_type",
"=",
"None",
",",
"alternate_data",
"=",
"None",
")",
":",
"raw",
"=",
"node",
".",
"data",
"if",
"getattr",
"(",
"node",
",",
"'encoding'",
",",
"None",
")",
"==",
"'zlib'",
":",
"try",
":",
... | Create a ContentItem from a node in the spinn3r data tree.
The ContentItem is created with raw data set to ``node.data``,
decompressed if the node's encoding is 'zlib', and UTF-8
normalized, with a MIME type from ``node.mime_type``.
``node``
the actual node from the spinn3r protobuf data
``m... | [
"Create",
"a",
"ContentItem",
"from",
"a",
"node",
"in",
"the",
"spinn3r",
"data",
"tree",
"."
] | python | test |
niemasd/TreeSwift | treeswift/Tree.py | https://github.com/niemasd/TreeSwift/blob/7e0cbc770fcc2ee1194ef7c2a0ab9fb82f089917/treeswift/Tree.py#L1199-L1223 | def read_tree_dendropy(tree):
'''Create a TreeSwift tree from a DendroPy tree
Args:
``tree`` (``dendropy.datamodel.treemodel``): A Dendropy ``Tree`` object
Returns:
``Tree``: A TreeSwift tree created from ``tree``
'''
out = Tree(); d2t = dict()
if not hasattr(tree, 'preorder_no... | [
"def",
"read_tree_dendropy",
"(",
"tree",
")",
":",
"out",
"=",
"Tree",
"(",
")",
"d2t",
"=",
"dict",
"(",
")",
"if",
"not",
"hasattr",
"(",
"tree",
",",
"'preorder_node_iter'",
")",
"or",
"not",
"hasattr",
"(",
"tree",
",",
"'seed_node'",
")",
"or",
... | Create a TreeSwift tree from a DendroPy tree
Args:
``tree`` (``dendropy.datamodel.treemodel``): A Dendropy ``Tree`` object
Returns:
``Tree``: A TreeSwift tree created from ``tree`` | [
"Create",
"a",
"TreeSwift",
"tree",
"from",
"a",
"DendroPy",
"tree"
] | python | train |
senaite/senaite.core | bika/lims/api/snapshot.py | https://github.com/senaite/senaite.core/blob/7602ce2ea2f9e81eb34e20ce17b98a3e70713f85/bika/lims/api/snapshot.py#L319-L342 | def compare_snapshots(snapshot_a, snapshot_b, raw=False):
"""Returns a diff of two given snapshots (dictionaries)
:param snapshot_a: First snapshot
:param snapshot_b: Second snapshot
:param raw: True to compare the raw values, e.g. UIDs
:returns: Dictionary of field/value pairs that differ
"""
... | [
"def",
"compare_snapshots",
"(",
"snapshot_a",
",",
"snapshot_b",
",",
"raw",
"=",
"False",
")",
":",
"if",
"not",
"all",
"(",
"map",
"(",
"lambda",
"x",
":",
"isinstance",
"(",
"x",
",",
"dict",
")",
",",
"[",
"snapshot_a",
",",
"snapshot_b",
"]",
"... | Returns a diff of two given snapshots (dictionaries)
:param snapshot_a: First snapshot
:param snapshot_b: Second snapshot
:param raw: True to compare the raw values, e.g. UIDs
:returns: Dictionary of field/value pairs that differ | [
"Returns",
"a",
"diff",
"of",
"two",
"given",
"snapshots",
"(",
"dictionaries",
")"
] | python | train |
noxdafox/clipspy | clips/facts.py | https://github.com/noxdafox/clipspy/blob/b22d71a6da821c1715d8fa00d7d75cabc09ed364/clips/facts.py#L365-L367 | def watch(self, flag):
"""Whether or not the Template is being watched."""
lib.EnvSetDeftemplateWatch(self._env, int(flag), self._tpl) | [
"def",
"watch",
"(",
"self",
",",
"flag",
")",
":",
"lib",
".",
"EnvSetDeftemplateWatch",
"(",
"self",
".",
"_env",
",",
"int",
"(",
"flag",
")",
",",
"self",
".",
"_tpl",
")"
] | Whether or not the Template is being watched. | [
"Whether",
"or",
"not",
"the",
"Template",
"is",
"being",
"watched",
"."
] | python | train |
kanboard/python-api-client | kanboard/client.py | https://github.com/kanboard/python-api-client/blob/a1e81094bb399a9a3f4f14de67406e1d2bbee393/kanboard/client.py#L106-L135 | def execute(self, method, **kwargs):
"""
Call remote API procedure
Args:
method: Procedure name
kwargs: Procedure named arguments
Returns:
Procedure result
Raises:
urllib2.HTTPError: Any HTTP error (Python 2)
urllib.e... | [
"def",
"execute",
"(",
"self",
",",
"method",
",",
"*",
"*",
"kwargs",
")",
":",
"payload",
"=",
"{",
"'id'",
":",
"1",
",",
"'jsonrpc'",
":",
"'2.0'",
",",
"'method'",
":",
"method",
",",
"'params'",
":",
"kwargs",
"}",
"credentials",
"=",
"base64",... | Call remote API procedure
Args:
method: Procedure name
kwargs: Procedure named arguments
Returns:
Procedure result
Raises:
urllib2.HTTPError: Any HTTP error (Python 2)
urllib.error.HTTPError: Any HTTP error (Python 3) | [
"Call",
"remote",
"API",
"procedure"
] | python | train |
serkanyersen/underscore.py | src/underscore.py | https://github.com/serkanyersen/underscore.py/blob/07c25c3f0f789536e4ad47aa315faccc0da9602f/src/underscore.py#L510-L519 | def last(self, n=1):
"""
Get the last element of an array. Passing **n** will return the last N
values in the array.
The **guard** check allows it to work with `_.map`.
"""
res = self.obj[-n:]
if len(res) is 1:
res = res[0]
return self._wrap(re... | [
"def",
"last",
"(",
"self",
",",
"n",
"=",
"1",
")",
":",
"res",
"=",
"self",
".",
"obj",
"[",
"-",
"n",
":",
"]",
"if",
"len",
"(",
"res",
")",
"is",
"1",
":",
"res",
"=",
"res",
"[",
"0",
"]",
"return",
"self",
".",
"_wrap",
"(",
"res",... | Get the last element of an array. Passing **n** will return the last N
values in the array.
The **guard** check allows it to work with `_.map`. | [
"Get",
"the",
"last",
"element",
"of",
"an",
"array",
".",
"Passing",
"**",
"n",
"**",
"will",
"return",
"the",
"last",
"N",
"values",
"in",
"the",
"array",
".",
"The",
"**",
"guard",
"**",
"check",
"allows",
"it",
"to",
"work",
"with",
"_",
".",
"... | python | train |
saltstack/salt | salt/modules/kernelpkg_linux_yum.py | https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/kernelpkg_linux_yum.py#L64-L81 | def list_installed():
'''
Return a list of all installed kernels.
CLI Example:
.. code-block:: bash
salt '*' kernelpkg.list_installed
'''
result = __salt__['pkg.version'](_package_name(), versions_as_list=True)
if result is None:
return []
if six.PY2:
return s... | [
"def",
"list_installed",
"(",
")",
":",
"result",
"=",
"__salt__",
"[",
"'pkg.version'",
"]",
"(",
"_package_name",
"(",
")",
",",
"versions_as_list",
"=",
"True",
")",
"if",
"result",
"is",
"None",
":",
"return",
"[",
"]",
"if",
"six",
".",
"PY2",
":"... | Return a list of all installed kernels.
CLI Example:
.. code-block:: bash
salt '*' kernelpkg.list_installed | [
"Return",
"a",
"list",
"of",
"all",
"installed",
"kernels",
"."
] | python | train |
Fantomas42/django-blog-zinnia | zinnia/views/mixins/templates.py | https://github.com/Fantomas42/django-blog-zinnia/blob/b4949304b104a8e1a7a7a0773cbfd024313c3a15/zinnia/views/mixins/templates.py#L159-L165 | def get_default_base_template_names(self):
"""
Return the Entry.template value.
"""
return [self.object.detail_template,
'%s.html' % self.object.slug,
'%s_%s' % (self.object.slug, self.object.detail_template)] | [
"def",
"get_default_base_template_names",
"(",
"self",
")",
":",
"return",
"[",
"self",
".",
"object",
".",
"detail_template",
",",
"'%s.html'",
"%",
"self",
".",
"object",
".",
"slug",
",",
"'%s_%s'",
"%",
"(",
"self",
".",
"object",
".",
"slug",
",",
"... | Return the Entry.template value. | [
"Return",
"the",
"Entry",
".",
"template",
"value",
"."
] | python | train |
ultrabug/py3status | py3status/formatter.py | https://github.com/ultrabug/py3status/blob/4c105f1b44f7384ca4f7da5f821a47e468c7dee2/py3status/formatter.py#L176-L222 | def build_block(self, format_string):
"""
Parse the format string into blocks containing Literals, Placeholders
etc that we can cache and reuse.
"""
first_block = Block(None, py3_wrapper=self.py3_wrapper)
block = first_block
# Tokenize the format string and proce... | [
"def",
"build_block",
"(",
"self",
",",
"format_string",
")",
":",
"first_block",
"=",
"Block",
"(",
"None",
",",
"py3_wrapper",
"=",
"self",
".",
"py3_wrapper",
")",
"block",
"=",
"first_block",
"# Tokenize the format string and process them",
"for",
"token",
"in... | Parse the format string into blocks containing Literals, Placeholders
etc that we can cache and reuse. | [
"Parse",
"the",
"format",
"string",
"into",
"blocks",
"containing",
"Literals",
"Placeholders",
"etc",
"that",
"we",
"can",
"cache",
"and",
"reuse",
"."
] | python | train |
saltstack/salt | salt/modules/zypperpkg.py | https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/zypperpkg.py#L2660-L2723 | def resolve_capabilities(pkgs, refresh=False, root=None, **kwargs):
'''
.. versionadded:: 2018.3.0
Convert name provides in ``pkgs`` into real package names if
``resolve_capabilities`` parameter is set to True. In case of
``resolve_capabilities`` is set to False the package list
is returned unc... | [
"def",
"resolve_capabilities",
"(",
"pkgs",
",",
"refresh",
"=",
"False",
",",
"root",
"=",
"None",
",",
"*",
"*",
"kwargs",
")",
":",
"if",
"refresh",
":",
"refresh_db",
"(",
"root",
")",
"ret",
"=",
"list",
"(",
")",
"for",
"pkg",
"in",
"pkgs",
"... | .. versionadded:: 2018.3.0
Convert name provides in ``pkgs`` into real package names if
``resolve_capabilities`` parameter is set to True. In case of
``resolve_capabilities`` is set to False the package list
is returned unchanged.
refresh
force a refresh if set to True.
If set to F... | [
"..",
"versionadded",
"::",
"2018",
".",
"3",
".",
"0"
] | python | train |
inasafe/inasafe | safe/report/expressions/map_report.py | https://github.com/inasafe/inasafe/blob/831d60abba919f6d481dc94a8d988cc205130724/safe/report/expressions/map_report.py#L491-L495 | def unknown_source_text_element(feature, parent):
"""Retrieve reference title header string from definitions."""
_ = feature, parent # NOQA
header = unknown_source_text['string_format']
return header.capitalize() | [
"def",
"unknown_source_text_element",
"(",
"feature",
",",
"parent",
")",
":",
"_",
"=",
"feature",
",",
"parent",
"# NOQA",
"header",
"=",
"unknown_source_text",
"[",
"'string_format'",
"]",
"return",
"header",
".",
"capitalize",
"(",
")"
] | Retrieve reference title header string from definitions. | [
"Retrieve",
"reference",
"title",
"header",
"string",
"from",
"definitions",
"."
] | python | train |
learningequality/ricecooker | ricecooker/config.py | https://github.com/learningequality/ricecooker/blob/2f0385282500cb77ef2894646c6f9ce11bd7a853/ricecooker/config.py#L184-L192 | def init_file_mapping_store():
""" init_file_mapping_store: creates log to keep track of downloaded files
Args: None
Returns: None
"""
# Make storage directory for restore files if it doesn't already exist
path = os.path.join(RESTORE_DIRECTORY, FILE_STORE_LOCATION)
if not os.path.exi... | [
"def",
"init_file_mapping_store",
"(",
")",
":",
"# Make storage directory for restore files if it doesn't already exist",
"path",
"=",
"os",
".",
"path",
".",
"join",
"(",
"RESTORE_DIRECTORY",
",",
"FILE_STORE_LOCATION",
")",
"if",
"not",
"os",
".",
"path",
".",
"exi... | init_file_mapping_store: creates log to keep track of downloaded files
Args: None
Returns: None | [
"init_file_mapping_store",
":",
"creates",
"log",
"to",
"keep",
"track",
"of",
"downloaded",
"files",
"Args",
":",
"None",
"Returns",
":",
"None"
] | python | train |
deshima-dev/decode | decode/core/__init__.py | https://github.com/deshima-dev/decode/blob/e789e174cd316e7ec8bc55be7009ad35baced3c0/decode/core/__init__.py#L22-L24 | def scalarcoords(self):
"""A dictionary of values that don't label any axes (point-like)."""
return {k: v.values for k, v in self.coords.items() if v.dims==()} | [
"def",
"scalarcoords",
"(",
"self",
")",
":",
"return",
"{",
"k",
":",
"v",
".",
"values",
"for",
"k",
",",
"v",
"in",
"self",
".",
"coords",
".",
"items",
"(",
")",
"if",
"v",
".",
"dims",
"==",
"(",
")",
"}"
] | A dictionary of values that don't label any axes (point-like). | [
"A",
"dictionary",
"of",
"values",
"that",
"don",
"t",
"label",
"any",
"axes",
"(",
"point",
"-",
"like",
")",
"."
] | python | train |
micolous/python-slackrealtime | src/slackrealtime/session.py | https://github.com/micolous/python-slackrealtime/blob/e9c94416f979a6582110ebba09c147de2bfe20a1/src/slackrealtime/session.py#L208-L221 | def request_session(token, url=None):
"""
Requests a WebSocket session for the Real-Time Messaging API.
Returns a SessionMetadata object containing the information retrieved from
the API call.
"""
if url is None:
api = SlackApi()
else:
api = SlackApi(url)
response = api.rtm.start(token=token)
return Ses... | [
"def",
"request_session",
"(",
"token",
",",
"url",
"=",
"None",
")",
":",
"if",
"url",
"is",
"None",
":",
"api",
"=",
"SlackApi",
"(",
")",
"else",
":",
"api",
"=",
"SlackApi",
"(",
"url",
")",
"response",
"=",
"api",
".",
"rtm",
".",
"start",
"... | Requests a WebSocket session for the Real-Time Messaging API.
Returns a SessionMetadata object containing the information retrieved from
the API call. | [
"Requests",
"a",
"WebSocket",
"session",
"for",
"the",
"Real",
"-",
"Time",
"Messaging",
"API",
".",
"Returns",
"a",
"SessionMetadata",
"object",
"containing",
"the",
"information",
"retrieved",
"from",
"the",
"API",
"call",
"."
] | python | train |
googlefonts/ufo2ft | Lib/ufo2ft/featureCompiler.py | https://github.com/googlefonts/ufo2ft/blob/915b986558e87bee288765d9218cc1cd4ebf7f4c/Lib/ufo2ft/featureCompiler.py#L30-L58 | def parseLayoutFeatures(font):
""" Parse OpenType layout features in the UFO and return a
feaLib.ast.FeatureFile instance.
"""
featxt = tounicode(font.features.text or "", "utf-8")
if not featxt:
return ast.FeatureFile()
buf = UnicodeIO(featxt)
# the path is used by the lexer to reso... | [
"def",
"parseLayoutFeatures",
"(",
"font",
")",
":",
"featxt",
"=",
"tounicode",
"(",
"font",
".",
"features",
".",
"text",
"or",
"\"\"",
",",
"\"utf-8\"",
")",
"if",
"not",
"featxt",
":",
"return",
"ast",
".",
"FeatureFile",
"(",
")",
"buf",
"=",
"Uni... | Parse OpenType layout features in the UFO and return a
feaLib.ast.FeatureFile instance. | [
"Parse",
"OpenType",
"layout",
"features",
"in",
"the",
"UFO",
"and",
"return",
"a",
"feaLib",
".",
"ast",
".",
"FeatureFile",
"instance",
"."
] | python | train |
brocade/pynos | pynos/versions/ver_7/ver_7_1_0/yang/brocade_fabric_service.py | https://github.com/brocade/pynos/blob/bd8a34e98f322de3fc06750827d8bbc3a0c00380/pynos/versions/ver_7/ver_7_1_0/yang/brocade_fabric_service.py#L405-L417 | def show_fibrechannel_interface_info_output_show_fibrechannel_interface_portsgroup_rbridgeid(self, **kwargs):
"""Auto Generated Code
"""
config = ET.Element("config")
show_fibrechannel_interface_info = ET.Element("show_fibrechannel_interface_info")
config = show_fibrechannel_inte... | [
"def",
"show_fibrechannel_interface_info_output_show_fibrechannel_interface_portsgroup_rbridgeid",
"(",
"self",
",",
"*",
"*",
"kwargs",
")",
":",
"config",
"=",
"ET",
".",
"Element",
"(",
"\"config\"",
")",
"show_fibrechannel_interface_info",
"=",
"ET",
".",
"Element",
... | Auto Generated Code | [
"Auto",
"Generated",
"Code"
] | python | train |
PyCQA/pylint | pylint/checkers/variables.py | https://github.com/PyCQA/pylint/blob/2bf5c61a3ff6ae90613b81679de42c0f19aea600/pylint/checkers/variables.py#L67-L77 | def _is_from_future_import(stmt, name):
"""Check if the name is a future import from another module."""
try:
module = stmt.do_import_module(stmt.modname)
except astroid.AstroidBuildingException:
return None
for local_node in module.locals.get(name, []):
if isinstance(local_node,... | [
"def",
"_is_from_future_import",
"(",
"stmt",
",",
"name",
")",
":",
"try",
":",
"module",
"=",
"stmt",
".",
"do_import_module",
"(",
"stmt",
".",
"modname",
")",
"except",
"astroid",
".",
"AstroidBuildingException",
":",
"return",
"None",
"for",
"local_node",... | Check if the name is a future import from another module. | [
"Check",
"if",
"the",
"name",
"is",
"a",
"future",
"import",
"from",
"another",
"module",
"."
] | python | test |
Diaoul/subliminal | subliminal/utils.py | https://github.com/Diaoul/subliminal/blob/a952dfb2032eb0fd6eb1eb89f04080923c11c4cf/subliminal/utils.py#L93-L122 | def sanitize(string, ignore_characters=None):
"""Sanitize a string to strip special characters.
:param str string: the string to sanitize.
:param set ignore_characters: characters to ignore.
:return: the sanitized string.
:rtype: str
"""
# only deal with strings
if string is None:
... | [
"def",
"sanitize",
"(",
"string",
",",
"ignore_characters",
"=",
"None",
")",
":",
"# only deal with strings",
"if",
"string",
"is",
"None",
":",
"return",
"ignore_characters",
"=",
"ignore_characters",
"or",
"set",
"(",
")",
"# replace some characters with one space"... | Sanitize a string to strip special characters.
:param str string: the string to sanitize.
:param set ignore_characters: characters to ignore.
:return: the sanitized string.
:rtype: str | [
"Sanitize",
"a",
"string",
"to",
"strip",
"special",
"characters",
"."
] | python | train |
xtrementl/focus | focus/plugin/modules/tasks.py | https://github.com/xtrementl/focus/blob/cbbbc0b49a7409f9e0dc899de5b7e057f50838e4/focus/plugin/modules/tasks.py#L377-L412 | def execute(self, env, args):
""" Removes a task.
`env`
Runtime ``Environment`` instance.
`args`
Arguments object from arg parser.
"""
# extract args
task_name = args.task_name
force = args.force
if env.task.a... | [
"def",
"execute",
"(",
"self",
",",
"env",
",",
"args",
")",
":",
"# extract args",
"task_name",
"=",
"args",
".",
"task_name",
"force",
"=",
"args",
".",
"force",
"if",
"env",
".",
"task",
".",
"active",
"and",
"env",
".",
"task",
".",
"name",
"==",... | Removes a task.
`env`
Runtime ``Environment`` instance.
`args`
Arguments object from arg parser. | [
"Removes",
"a",
"task",
"."
] | python | train |
bunq/sdk_python | bunq/sdk/model/generated/endpoint.py | https://github.com/bunq/sdk_python/blob/da6c9b83e6d83ee8062617f53c6eb7293c0d863d/bunq/sdk/model/generated/endpoint.py#L16081-L16101 | def is_all_field_none(self):
"""
:rtype: bool
"""
if self._id_ is not None:
return False
if self._created is not None:
return False
if self._updated is not None:
return False
if self._year is not None:
return Fal... | [
"def",
"is_all_field_none",
"(",
"self",
")",
":",
"if",
"self",
".",
"_id_",
"is",
"not",
"None",
":",
"return",
"False",
"if",
"self",
".",
"_created",
"is",
"not",
"None",
":",
"return",
"False",
"if",
"self",
".",
"_updated",
"is",
"not",
"None",
... | :rtype: bool | [
":",
"rtype",
":",
"bool"
] | python | train |
UCL-INGI/INGInious | inginious/frontend/accessible_time.py | https://github.com/UCL-INGI/INGInious/blob/cbda9a9c7f2b8e8eb1e6d7d51f0d18092086300c/inginious/frontend/accessible_time.py#L98-L100 | def is_always_accessible(self):
""" Returns true if the course/task is always accessible """
return self._val[0] == datetime.min and self._val[1] == datetime.max | [
"def",
"is_always_accessible",
"(",
"self",
")",
":",
"return",
"self",
".",
"_val",
"[",
"0",
"]",
"==",
"datetime",
".",
"min",
"and",
"self",
".",
"_val",
"[",
"1",
"]",
"==",
"datetime",
".",
"max"
] | Returns true if the course/task is always accessible | [
"Returns",
"true",
"if",
"the",
"course",
"/",
"task",
"is",
"always",
"accessible"
] | python | train |
ArduPilot/MAVProxy | MAVProxy/modules/mavproxy_output.py | https://github.com/ArduPilot/MAVProxy/blob/f50bdeff33064876f7dc8dc4683d278ff47f75d5/MAVProxy/modules/mavproxy_output.py#L71-L88 | def cmd_output_sysid(self, args):
'''add new output for a specific MAVLink sysID'''
sysid = int(args[0])
device = args[1]
print("Adding output %s for sysid %u" % (device, sysid))
try:
conn = mavutil.mavlink_connection(device, input=False, source_system=self.settings.s... | [
"def",
"cmd_output_sysid",
"(",
"self",
",",
"args",
")",
":",
"sysid",
"=",
"int",
"(",
"args",
"[",
"0",
"]",
")",
"device",
"=",
"args",
"[",
"1",
"]",
"print",
"(",
"\"Adding output %s for sysid %u\"",
"%",
"(",
"device",
",",
"sysid",
")",
")",
... | add new output for a specific MAVLink sysID | [
"add",
"new",
"output",
"for",
"a",
"specific",
"MAVLink",
"sysID"
] | python | train |
Qiskit/qiskit-terra | qiskit/dagcircuit/dagcircuit.py | https://github.com/Qiskit/qiskit-terra/blob/d4f58d903bc96341b816f7c35df936d6421267d1/qiskit/dagcircuit/dagcircuit.py#L930-L937 | def edges(self, nodes=None):
"""Iterator for node values.
Yield:
node: the node.
"""
for source_node, dest_node, edge_data in self._multi_graph.edges(nodes, data=True):
yield source_node, dest_node, edge_data | [
"def",
"edges",
"(",
"self",
",",
"nodes",
"=",
"None",
")",
":",
"for",
"source_node",
",",
"dest_node",
",",
"edge_data",
"in",
"self",
".",
"_multi_graph",
".",
"edges",
"(",
"nodes",
",",
"data",
"=",
"True",
")",
":",
"yield",
"source_node",
",",
... | Iterator for node values.
Yield:
node: the node. | [
"Iterator",
"for",
"node",
"values",
"."
] | python | test |
bcbio/bcbio-nextgen | bcbio/ngsalign/tophat.py | https://github.com/bcbio/bcbio-nextgen/blob/6a9348c0054ccd5baffd22f1bb7d0422f6978b20/bcbio/ngsalign/tophat.py#L173-L187 | def _fix_mates(orig_file, out_file, ref_file, config):
"""Fix problematic unmapped mate pairs in TopHat output.
TopHat 2.0.9 appears to have issues with secondary reads:
https://groups.google.com/forum/#!topic/tuxedo-tools-users/puLfDNbN9bo
This cleans the input file to only keep properly mapped pairs,... | [
"def",
"_fix_mates",
"(",
"orig_file",
",",
"out_file",
",",
"ref_file",
",",
"config",
")",
":",
"if",
"not",
"file_exists",
"(",
"out_file",
")",
":",
"with",
"file_transaction",
"(",
"config",
",",
"out_file",
")",
"as",
"tx_out_file",
":",
"samtools",
... | Fix problematic unmapped mate pairs in TopHat output.
TopHat 2.0.9 appears to have issues with secondary reads:
https://groups.google.com/forum/#!topic/tuxedo-tools-users/puLfDNbN9bo
This cleans the input file to only keep properly mapped pairs,
providing a general fix that will handle correctly mapped... | [
"Fix",
"problematic",
"unmapped",
"mate",
"pairs",
"in",
"TopHat",
"output",
"."
] | python | train |
refindlyllc/rets | rets/parsers/get_object.py | https://github.com/refindlyllc/rets/blob/c615dfc272cff0825fd3b50863c46afc3e33916f/rets/parsers/get_object.py#L39-L73 | def _get_multiparts(response):
"""
From this
'multipart/parallel; boundary="874e43d27ec6d83f30f37841bdaf90c7"; charset=utf-8'
get this
--874e43d27ec6d83f30f37841bdaf90c7
"""
boundary = None
for part in response.headers.get('Content-Type', '').split(';'):
... | [
"def",
"_get_multiparts",
"(",
"response",
")",
":",
"boundary",
"=",
"None",
"for",
"part",
"in",
"response",
".",
"headers",
".",
"get",
"(",
"'Content-Type'",
",",
"''",
")",
".",
"split",
"(",
"';'",
")",
":",
"if",
"'boundary='",
"in",
"part",
":"... | From this
'multipart/parallel; boundary="874e43d27ec6d83f30f37841bdaf90c7"; charset=utf-8'
get this
--874e43d27ec6d83f30f37841bdaf90c7 | [
"From",
"this",
"multipart",
"/",
"parallel",
";",
"boundary",
"=",
"874e43d27ec6d83f30f37841bdaf90c7",
";",
"charset",
"=",
"utf",
"-",
"8",
"get",
"this",
"--",
"874e43d27ec6d83f30f37841bdaf90c7"
] | python | train |
PyProphet/pyprophet | pyprophet/main.py | https://github.com/PyProphet/pyprophet/blob/f546ad171750cd7685afbde6785fe71f82cadb35/pyprophet/main.py#L112-L122 | def ipf(infile, outfile, ipf_ms1_scoring, ipf_ms2_scoring, ipf_h0, ipf_grouped_fdr, ipf_max_precursor_pep, ipf_max_peakgroup_pep, ipf_max_precursor_peakgroup_pep, ipf_max_transition_pep):
"""
Infer peptidoforms after scoring of MS1, MS2 and transition-level data.
"""
if outfile is None:
outfile... | [
"def",
"ipf",
"(",
"infile",
",",
"outfile",
",",
"ipf_ms1_scoring",
",",
"ipf_ms2_scoring",
",",
"ipf_h0",
",",
"ipf_grouped_fdr",
",",
"ipf_max_precursor_pep",
",",
"ipf_max_peakgroup_pep",
",",
"ipf_max_precursor_peakgroup_pep",
",",
"ipf_max_transition_pep",
")",
":... | Infer peptidoforms after scoring of MS1, MS2 and transition-level data. | [
"Infer",
"peptidoforms",
"after",
"scoring",
"of",
"MS1",
"MS2",
"and",
"transition",
"-",
"level",
"data",
"."
] | python | test |
google/transitfeed | merge.py | https://github.com/google/transitfeed/blob/eb2991a3747ba541b2cb66502b305b6304a1f85f/merge.py#L265-L281 | def _GenerateNotices(self):
"""Generate a summary of any notices.
Returns:
The generated HTML as a string.
"""
items = []
for e in self._notices:
d = e.GetDictToFormat()
if 'url' in d.keys():
d['url'] = '<a href="%(url)s">%(url)s</a>' % d
items.append('<li class="not... | [
"def",
"_GenerateNotices",
"(",
"self",
")",
":",
"items",
"=",
"[",
"]",
"for",
"e",
"in",
"self",
".",
"_notices",
":",
"d",
"=",
"e",
".",
"GetDictToFormat",
"(",
")",
"if",
"'url'",
"in",
"d",
".",
"keys",
"(",
")",
":",
"d",
"[",
"'url'",
... | Generate a summary of any notices.
Returns:
The generated HTML as a string. | [
"Generate",
"a",
"summary",
"of",
"any",
"notices",
"."
] | python | train |
genialis/resolwe | resolwe/flow/serializers/data.py | https://github.com/genialis/resolwe/blob/f7bb54932c81ec0cfc5b5e80d238fceaeaa48d86/resolwe/flow/serializers/data.py#L91-L98 | def _serialize_items(self, serializer, kind, items):
"""Return serialized items or list of ids, depending on `hydrate_XXX` query param."""
if self.request and self.request.query_params.get('hydrate_{}'.format(kind), False):
serializer = serializer(items, many=True, read_only=True)
... | [
"def",
"_serialize_items",
"(",
"self",
",",
"serializer",
",",
"kind",
",",
"items",
")",
":",
"if",
"self",
".",
"request",
"and",
"self",
".",
"request",
".",
"query_params",
".",
"get",
"(",
"'hydrate_{}'",
".",
"format",
"(",
"kind",
")",
",",
"Fa... | Return serialized items or list of ids, depending on `hydrate_XXX` query param. | [
"Return",
"serialized",
"items",
"or",
"list",
"of",
"ids",
"depending",
"on",
"hydrate_XXX",
"query",
"param",
"."
] | python | train |
trevisanj/f311 | f311/explorer/util.py | https://github.com/trevisanj/f311/blob/9e502a3d1e1f74d4290a8a0bae9a34ef8d7b29f7/f311/explorer/util.py#L14-L34 | def cut_spectrum(sp, l0, lf):
"""
Cuts spectrum given a wavelength interval, leaving origina intact
Args:
sp: Spectrum instance
l0: initial wavelength
lf: final wavelength
Returns:
Spectrum: cut spectrum
"""
if l0 >= lf:
raise ValueError("l0 must be low... | [
"def",
"cut_spectrum",
"(",
"sp",
",",
"l0",
",",
"lf",
")",
":",
"if",
"l0",
">=",
"lf",
":",
"raise",
"ValueError",
"(",
"\"l0 must be lower than lf\"",
")",
"idx0",
"=",
"np",
".",
"argmin",
"(",
"np",
".",
"abs",
"(",
"sp",
".",
"x",
"-",
"l0",... | Cuts spectrum given a wavelength interval, leaving origina intact
Args:
sp: Spectrum instance
l0: initial wavelength
lf: final wavelength
Returns:
Spectrum: cut spectrum | [
"Cuts",
"spectrum",
"given",
"a",
"wavelength",
"interval",
"leaving",
"origina",
"intact"
] | python | train |
scopus-api/scopus | scopus/abstract_retrieval.py | https://github.com/scopus-api/scopus/blob/27ce02dd3095bfdab9d3e8475543d7c17767d1ab/scopus/abstract_retrieval.py#L38-L47 | def authkeywords(self):
"""List of author-provided keywords of the abstract."""
keywords = self._json['authkeywords']
if keywords is None:
return None
else:
try:
return [d['$'] for d in keywords['author-keyword']]
except TypeError: # S... | [
"def",
"authkeywords",
"(",
"self",
")",
":",
"keywords",
"=",
"self",
".",
"_json",
"[",
"'authkeywords'",
"]",
"if",
"keywords",
"is",
"None",
":",
"return",
"None",
"else",
":",
"try",
":",
"return",
"[",
"d",
"[",
"'$'",
"]",
"for",
"d",
"in",
... | List of author-provided keywords of the abstract. | [
"List",
"of",
"author",
"-",
"provided",
"keywords",
"of",
"the",
"abstract",
"."
] | python | train |
chrisrink10/basilisp | src/basilisp/lang/runtime.py | https://github.com/chrisrink10/basilisp/blob/3d82670ee218ec64eb066289c82766d14d18cc92/src/basilisp/lang/runtime.py#L838-L866 | def nth(coll, i, notfound=__nth_sentinel):
"""Returns the ith element of coll (0-indexed), if it exists.
None otherwise. If i is out of bounds, throws an IndexError unless
notfound is specified."""
if coll is None:
return None
try:
return coll[i]
except IndexError as ex:
... | [
"def",
"nth",
"(",
"coll",
",",
"i",
",",
"notfound",
"=",
"__nth_sentinel",
")",
":",
"if",
"coll",
"is",
"None",
":",
"return",
"None",
"try",
":",
"return",
"coll",
"[",
"i",
"]",
"except",
"IndexError",
"as",
"ex",
":",
"if",
"notfound",
"is",
... | Returns the ith element of coll (0-indexed), if it exists.
None otherwise. If i is out of bounds, throws an IndexError unless
notfound is specified. | [
"Returns",
"the",
"ith",
"element",
"of",
"coll",
"(",
"0",
"-",
"indexed",
")",
"if",
"it",
"exists",
".",
"None",
"otherwise",
".",
"If",
"i",
"is",
"out",
"of",
"bounds",
"throws",
"an",
"IndexError",
"unless",
"notfound",
"is",
"specified",
"."
] | python | test |
dcwatson/drill | drill.py | https://github.com/dcwatson/drill/blob/b8a30ec0fd5b5bf55154bd44c1c75f5f5945691b/drill.py#L328-L375 | def _match(self, pred):
"""
Helper function to determine if this node matches the given predicate.
"""
if not pred:
return True
# Strip off the [ and ]
pred = pred[1:-1]
if pred.startswith('@'):
# An attribute predicate checks the existence... | [
"def",
"_match",
"(",
"self",
",",
"pred",
")",
":",
"if",
"not",
"pred",
":",
"return",
"True",
"# Strip off the [ and ]",
"pred",
"=",
"pred",
"[",
"1",
":",
"-",
"1",
"]",
"if",
"pred",
".",
"startswith",
"(",
"'@'",
")",
":",
"# An attribute predic... | Helper function to determine if this node matches the given predicate. | [
"Helper",
"function",
"to",
"determine",
"if",
"this",
"node",
"matches",
"the",
"given",
"predicate",
"."
] | python | valid |
SITools2/pySitools2_1.0 | sitools2/core/query.py | https://github.com/SITools2/pySitools2_1.0/blob/acd13198162456ba401a0b923af989bb29feb3b6/sitools2/core/query.py#L255-L262 | def __validInputs(self):
"""Validates the inputs of the constructor."""
#if not isinstance(self.__column, Column):
# raise Sitools2Exception("column must be an instance of Column")
if self.__type not in self.__TYPE:
raise Sitools2Exception("Type must be one of these value... | [
"def",
"__validInputs",
"(",
"self",
")",
":",
"#if not isinstance(self.__column, Column):",
"# raise Sitools2Exception(\"column must be an instance of Column\") ",
"if",
"self",
".",
"__type",
"not",
"in",
"self",
".",
"__TYPE",
":",
"raise",
"Sitools2Exception",
"(",
"... | Validates the inputs of the constructor. | [
"Validates",
"the",
"inputs",
"of",
"the",
"constructor",
"."
] | python | train |
idmillington/layout | layout/datatypes/parse_dimensions.py | https://github.com/idmillington/layout/blob/c452d1d7a74c9a74f7639c1b49e2a41c4e354bb5/layout/datatypes/parse_dimensions.py#L87-L116 | def _split_dimension(text):
"""
Returns the number and unit from the given piece of text as a pair.
>>> _split_dimension('1pt')
(1, 'pt')
>>> _split_dimension('1 pt')
(1, 'pt')
>>> _split_dimension('1 \tpt')
(1, 'pt')
>>> _split_dimension('1 \tpt ')
(1, 'pt')
>>> _split_d... | [
"def",
"_split_dimension",
"(",
"text",
")",
":",
"match",
"=",
"_dimension_finder",
".",
"match",
"(",
"text",
")",
"if",
"not",
"match",
":",
"raise",
"DimensionError",
"(",
"\"Can't parse dimension '%s'.\"",
"%",
"text",
")",
"number",
"=",
"match",
".",
... | Returns the number and unit from the given piece of text as a pair.
>>> _split_dimension('1pt')
(1, 'pt')
>>> _split_dimension('1 pt')
(1, 'pt')
>>> _split_dimension('1 \tpt')
(1, 'pt')
>>> _split_dimension('1 \tpt ')
(1, 'pt')
>>> _split_dimension(' 1 \tpt ')
(1, 'pt')
... | [
"Returns",
"the",
"number",
"and",
"unit",
"from",
"the",
"given",
"piece",
"of",
"text",
"as",
"a",
"pair",
"."
] | python | train |
ggravlingen/pytradfri | pytradfri/resource.py | https://github.com/ggravlingen/pytradfri/blob/63750fa8fb27158c013d24865cdaa7fb82b3ab53/pytradfri/resource.py#L67-L75 | def update(self):
"""
Update the group.
Returns a Command.
"""
def process_result(result):
self.raw = result
return Command('get', self.path, process_result=process_result) | [
"def",
"update",
"(",
"self",
")",
":",
"def",
"process_result",
"(",
"result",
")",
":",
"self",
".",
"raw",
"=",
"result",
"return",
"Command",
"(",
"'get'",
",",
"self",
".",
"path",
",",
"process_result",
"=",
"process_result",
")"
] | Update the group.
Returns a Command. | [
"Update",
"the",
"group",
"."
] | python | train |
JHowell45/helium-cli | helium/helium_functions/convert_youtube_url.py | https://github.com/JHowell45/helium-cli/blob/8decc2f410a17314440eeed411a4b19dd4b4e780/helium/helium_functions/convert_youtube_url.py#L9-L37 | def convert_youtube_url(youtube_url, no_controls, autoplay):
"""Use this function to convert the youtube URL.
This function is used for converting the youtube URL so that it can be
used correctly with Helium. It means that Helium will know the next
video in the playlist.
:param youtube_url: the UR... | [
"def",
"convert_youtube_url",
"(",
"youtube_url",
",",
"no_controls",
",",
"autoplay",
")",
":",
"for",
"section",
"in",
"youtube_url",
".",
"split",
"(",
"'&'",
")",
":",
"if",
"'list'",
"in",
"section",
":",
"playlist_id",
"=",
"section",
".",
"split",
"... | Use this function to convert the youtube URL.
This function is used for converting the youtube URL so that it can be
used correctly with Helium. It means that Helium will know the next
video in the playlist.
:param youtube_url: the URL of the youtube playlist video.
:type youtube_url: str
:par... | [
"Use",
"this",
"function",
"to",
"convert",
"the",
"youtube",
"URL",
"."
] | python | train |
Asana/python-asana | asana/resources/gen/workspaces.py | https://github.com/Asana/python-asana/blob/6deb7a34495db23f44858e53b6bb2c9eccff7872/asana/resources/gen/workspaces.py#L99-L112 | def remove_user(self, workspace, params={}, **options):
"""The user making this call must be an admin in the workspace.
Returns an empty data record.
Parameters
----------
workspace : {Id} The workspace or organization to invite the user to.
[data] : {Object} Data for t... | [
"def",
"remove_user",
"(",
"self",
",",
"workspace",
",",
"params",
"=",
"{",
"}",
",",
"*",
"*",
"options",
")",
":",
"path",
"=",
"\"/workspaces/%s/removeUser\"",
"%",
"(",
"workspace",
")",
"return",
"self",
".",
"client",
".",
"post",
"(",
"path",
... | The user making this call must be an admin in the workspace.
Returns an empty data record.
Parameters
----------
workspace : {Id} The workspace or organization to invite the user to.
[data] : {Object} Data for the request
- user : {String} An identifier for the user. C... | [
"The",
"user",
"making",
"this",
"call",
"must",
"be",
"an",
"admin",
"in",
"the",
"workspace",
".",
"Returns",
"an",
"empty",
"data",
"record",
"."
] | python | train |
resync/resync | resync/sitemap.py | https://github.com/resync/resync/blob/98292c17b2c00f2d6f5191c6ab51fef8c292a018/resync/sitemap.py#L85-L138 | def resources_as_xml(self, resources, sitemapindex=False, fh=None):
"""Write or return XML for a set of resources in sitemap format.
Arguments:
- resources - either an iterable or iterator of Resource objects;
if there an md attribute this will go to <rs:md>
... | [
"def",
"resources_as_xml",
"(",
"self",
",",
"resources",
",",
"sitemapindex",
"=",
"False",
",",
"fh",
"=",
"None",
")",
":",
"# element names depending on sitemapindex or not",
"root_element",
"=",
"(",
"'sitemapindex'",
"if",
"(",
"sitemapindex",
")",
"else",
"... | Write or return XML for a set of resources in sitemap format.
Arguments:
- resources - either an iterable or iterator of Resource objects;
if there an md attribute this will go to <rs:md>
if there an ln attribute this will go to <rs:ln>
- sitemapindex... | [
"Write",
"or",
"return",
"XML",
"for",
"a",
"set",
"of",
"resources",
"in",
"sitemap",
"format",
"."
] | python | train |
saltstack/salt | salt/modules/win_file.py | https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/win_file.py#L515-L552 | def get_uid(path, follow_symlinks=True):
'''
Return the id of the user that owns a given file
Symlinks are followed by default to mimic Unix behavior. Specify
`follow_symlinks=False` to turn off this behavior.
Args:
path (str): The path to the file or directory
follow_symlinks (bo... | [
"def",
"get_uid",
"(",
"path",
",",
"follow_symlinks",
"=",
"True",
")",
":",
"if",
"not",
"os",
".",
"path",
".",
"exists",
"(",
"path",
")",
":",
"raise",
"CommandExecutionError",
"(",
"'Path not found: {0}'",
".",
"format",
"(",
"path",
")",
")",
"# U... | Return the id of the user that owns a given file
Symlinks are followed by default to mimic Unix behavior. Specify
`follow_symlinks=False` to turn off this behavior.
Args:
path (str): The path to the file or directory
follow_symlinks (bool):
If the object specified by ``path`` ... | [
"Return",
"the",
"id",
"of",
"the",
"user",
"that",
"owns",
"a",
"given",
"file"
] | python | train |
tuomas2/automate | src/automate/system.py | https://github.com/tuomas2/automate/blob/d8a8cd03cd0da047e033a2d305f3f260f8c4e017/src/automate/system.py#L398-L429 | def cleanup(self):
"""
Clean up before quitting
"""
self.pre_exit_trigger = True
self.logger.info("Shutting down %s, please wait a moment.", self.name)
for t in threading.enumerate():
if isinstance(t, TimerClass):
t.cancel()
self.... | [
"def",
"cleanup",
"(",
"self",
")",
":",
"self",
".",
"pre_exit_trigger",
"=",
"True",
"self",
".",
"logger",
".",
"info",
"(",
"\"Shutting down %s, please wait a moment.\"",
",",
"self",
".",
"name",
")",
"for",
"t",
"in",
"threading",
".",
"enumerate",
"("... | Clean up before quitting | [
"Clean",
"up",
"before",
"quitting"
] | python | train |
zomux/deepy | deepy/trainers/trainers.py | https://github.com/zomux/deepy/blob/090fbad22a08a809b12951cd0d4984f5bd432698/deepy/trainers/trainers.py#L65-L72 | def optimization_updates(self, params, gradients):
"""
Return updates from optimization.
"""
updates, free_parameters = optimize_updates(params, gradients, self.config)
self.network.free_parameters.extend(free_parameters)
logging.info("Added %d free parameters for optimiz... | [
"def",
"optimization_updates",
"(",
"self",
",",
"params",
",",
"gradients",
")",
":",
"updates",
",",
"free_parameters",
"=",
"optimize_updates",
"(",
"params",
",",
"gradients",
",",
"self",
".",
"config",
")",
"self",
".",
"network",
".",
"free_parameters",... | Return updates from optimization. | [
"Return",
"updates",
"from",
"optimization",
"."
] | python | test |
wummel/patool | patoolib/__init__.py | https://github.com/wummel/patool/blob/d7e64d9fd60faaa4b3f824bd97c43ce59b185c40/patoolib/__init__.py#L749-L758 | def repack_archive (archive, archive_new, verbosity=0, interactive=True):
"""Repack archive to different file and/or format."""
util.check_existing_filename(archive)
util.check_new_filename(archive_new)
if verbosity >= 0:
util.log_info("Repacking %s to %s ..." % (archive, archive_new))
res =... | [
"def",
"repack_archive",
"(",
"archive",
",",
"archive_new",
",",
"verbosity",
"=",
"0",
",",
"interactive",
"=",
"True",
")",
":",
"util",
".",
"check_existing_filename",
"(",
"archive",
")",
"util",
".",
"check_new_filename",
"(",
"archive_new",
")",
"if",
... | Repack archive to different file and/or format. | [
"Repack",
"archive",
"to",
"different",
"file",
"and",
"/",
"or",
"format",
"."
] | python | train |
MartinThoma/hwrt | hwrt/utils.py | https://github.com/MartinThoma/hwrt/blob/725c21a3d0f5a30b8492cbc184b3688ceb364e1c/hwrt/utils.py#L699-L740 | def evaluate_model(recording, model_folder, verbose=False):
"""Evaluate model for a single recording."""
from . import preprocess_dataset
from . import features
for target_folder in get_recognizer_folders(model_folder):
# The source is later than the target. That means we need to
# refr... | [
"def",
"evaluate_model",
"(",
"recording",
",",
"model_folder",
",",
"verbose",
"=",
"False",
")",
":",
"from",
".",
"import",
"preprocess_dataset",
"from",
".",
"import",
"features",
"for",
"target_folder",
"in",
"get_recognizer_folders",
"(",
"model_folder",
")"... | Evaluate model for a single recording. | [
"Evaluate",
"model",
"for",
"a",
"single",
"recording",
"."
] | python | train |
rodluger/everest | everest/missions/k2/pipelines.py | https://github.com/rodluger/everest/blob/6779591f9f8b3556847e2fbf761bdfac7520eaea/everest/missions/k2/pipelines.py#L137-L193 | def get_cdpp(campaign, pipeline='everest2'):
'''
Computes the CDPP for a given `campaign` and a given `pipeline`.
Stores the results in a file under "/missions/k2/tables/".
'''
# Imports
from .k2 import CDPP
from .utils import GetK2Campaign
# Check pipeline
assert pipeline.lower()... | [
"def",
"get_cdpp",
"(",
"campaign",
",",
"pipeline",
"=",
"'everest2'",
")",
":",
"# Imports",
"from",
".",
"k2",
"import",
"CDPP",
"from",
".",
"utils",
"import",
"GetK2Campaign",
"# Check pipeline",
"assert",
"pipeline",
".",
"lower",
"(",
")",
"in",
"Pipe... | Computes the CDPP for a given `campaign` and a given `pipeline`.
Stores the results in a file under "/missions/k2/tables/". | [
"Computes",
"the",
"CDPP",
"for",
"a",
"given",
"campaign",
"and",
"a",
"given",
"pipeline",
".",
"Stores",
"the",
"results",
"in",
"a",
"file",
"under",
"/",
"missions",
"/",
"k2",
"/",
"tables",
"/",
"."
] | python | train |
coghost/izen | izen/crawler.py | https://github.com/coghost/izen/blob/432db017f99dd2ba809e1ba1792145ab6510263d/izen/crawler.py#L115-L128 | def fmt_cookies(self, ck):
"""
:param ck:
:type ck:
:return:
:rtype:
"""
cks = {}
for c in ck.split(';'):
a = c.split('=')
if len(a) != 2:
continue
cks[a[0].replace(' ', '')] = a[1].replace(' ', '')
... | [
"def",
"fmt_cookies",
"(",
"self",
",",
"ck",
")",
":",
"cks",
"=",
"{",
"}",
"for",
"c",
"in",
"ck",
".",
"split",
"(",
"';'",
")",
":",
"a",
"=",
"c",
".",
"split",
"(",
"'='",
")",
"if",
"len",
"(",
"a",
")",
"!=",
"2",
":",
"continue",
... | :param ck:
:type ck:
:return:
:rtype: | [
":",
"param",
"ck",
":",
":",
"type",
"ck",
":",
":",
"return",
":",
":",
"rtype",
":"
] | python | train |
wolfhong/formic | build.py | https://github.com/wolfhong/formic/blob/0d81eb88dcbb6fa705194fc6ccf2993f4abbaa76/build.py#L134-L155 | def configure_google_analytics():
"""An optional task; if run, this will switch on Google Analystics, reporting
documentation usage to Aviser.
This is meant to be run only by Aviser when producing HTML for the main
web site.
"""
f = open(os.path.join("doc", "_templates", "google-analytics.html"... | [
"def",
"configure_google_analytics",
"(",
")",
":",
"f",
"=",
"open",
"(",
"os",
".",
"path",
".",
"join",
"(",
"\"doc\"",
",",
"\"_templates\"",
",",
"\"google-analytics.html\"",
")",
",",
"\"w\"",
")",
"f",
".",
"write",
"(",
"\"\"\"<script type=\"text/javas... | An optional task; if run, this will switch on Google Analystics, reporting
documentation usage to Aviser.
This is meant to be run only by Aviser when producing HTML for the main
web site. | [
"An",
"optional",
"task",
";",
"if",
"run",
"this",
"will",
"switch",
"on",
"Google",
"Analystics",
"reporting",
"documentation",
"usage",
"to",
"Aviser",
"."
] | python | train |
pybel/pybel | src/pybel/canonicalize.py | https://github.com/pybel/pybel/blob/c8a7a1bdae4c475fa2a8c77f3a9a5f6d79556ca0/src/pybel/canonicalize.py#L35-L52 | def postpend_location(bel_string: str, location_model) -> str:
"""Rip off the closing parentheses and adds canonicalized modification.
I did this because writing a whole new parsing model for the data would be sad and difficult
:param bel_string: BEL string representing node
:param dict location_model... | [
"def",
"postpend_location",
"(",
"bel_string",
":",
"str",
",",
"location_model",
")",
"->",
"str",
":",
"if",
"not",
"all",
"(",
"k",
"in",
"location_model",
"for",
"k",
"in",
"{",
"NAMESPACE",
",",
"NAME",
"}",
")",
":",
"raise",
"ValueError",
"(",
"... | Rip off the closing parentheses and adds canonicalized modification.
I did this because writing a whole new parsing model for the data would be sad and difficult
:param bel_string: BEL string representing node
:param dict location_model: A dictionary containing keys :code:`pybel.constants.TO_LOC` and
... | [
"Rip",
"off",
"the",
"closing",
"parentheses",
"and",
"adds",
"canonicalized",
"modification",
"."
] | python | train |
fake-name/ChromeController | ChromeController/Generator/Generated.py | https://github.com/fake-name/ChromeController/blob/914dd136184e8f1165c7aa6ef30418aaf10c61f0/ChromeController/Generator/Generated.py#L2092-L2111 | def Network_setBlockedURLs(self, urls):
"""
Function path: Network.setBlockedURLs
Domain: Network
Method name: setBlockedURLs
WARNING: This function is marked 'Experimental'!
Parameters:
Required arguments:
'urls' (type: array) -> URL patterns to block. Wildcards ('*') are allowed.
No ... | [
"def",
"Network_setBlockedURLs",
"(",
"self",
",",
"urls",
")",
":",
"assert",
"isinstance",
"(",
"urls",
",",
"(",
"list",
",",
"tuple",
")",
")",
",",
"\"Argument 'urls' must be of type '['list', 'tuple']'. Received type: '%s'\"",
"%",
"type",
"(",
"urls",
")",
... | Function path: Network.setBlockedURLs
Domain: Network
Method name: setBlockedURLs
WARNING: This function is marked 'Experimental'!
Parameters:
Required arguments:
'urls' (type: array) -> URL patterns to block. Wildcards ('*') are allowed.
No return value.
Description: Blocks URLs fro... | [
"Function",
"path",
":",
"Network",
".",
"setBlockedURLs",
"Domain",
":",
"Network",
"Method",
"name",
":",
"setBlockedURLs",
"WARNING",
":",
"This",
"function",
"is",
"marked",
"Experimental",
"!",
"Parameters",
":",
"Required",
"arguments",
":",
"urls",
"(",
... | python | train |
nathankw/pulsarpy | pulsarpy/models.py | https://github.com/nathankw/pulsarpy/blob/359b040c0f2383b88c0b5548715fefd35f5f634c/pulsarpy/models.py#L634-L648 | def write_response_html_to_file(response,filename):
"""
An aid in troubleshooting internal application errors, i.e. <Response [500]>, to be mainly
beneficial when developing the server-side API. This method will write the response HTML
for viewing the error details in the browesr.
... | [
"def",
"write_response_html_to_file",
"(",
"response",
",",
"filename",
")",
":",
"fout",
"=",
"open",
"(",
"filename",
",",
"'w'",
")",
"if",
"not",
"str",
"(",
"response",
".",
"status_code",
")",
".",
"startswith",
"(",
"\"2\"",
")",
":",
"Model",
"."... | An aid in troubleshooting internal application errors, i.e. <Response [500]>, to be mainly
beneficial when developing the server-side API. This method will write the response HTML
for viewing the error details in the browesr.
Args:
response: `requests.models.Response` instance.
... | [
"An",
"aid",
"in",
"troubleshooting",
"internal",
"application",
"errors",
"i",
".",
"e",
".",
"<Response",
"[",
"500",
"]",
">",
"to",
"be",
"mainly",
"beneficial",
"when",
"developing",
"the",
"server",
"-",
"side",
"API",
".",
"This",
"method",
"will",
... | python | train |
hhromic/python-oslom-runner | oslom/runner.py | https://github.com/hhromic/python-oslom-runner/blob/f5991bd5014c65d0a9852641d51cbc344407d6a2/oslom/runner.py#L117-L133 | def read_clusters(self, min_cluster_size):
"""Read and parse OSLOM clusters output file."""
num_found = 0
clusters = []
with open(self.get_path(OslomRunner.OUTPUT_FILE), "r") as reader:
# Read the output file every two lines
for line1, line2 in itertools.izip_long... | [
"def",
"read_clusters",
"(",
"self",
",",
"min_cluster_size",
")",
":",
"num_found",
"=",
"0",
"clusters",
"=",
"[",
"]",
"with",
"open",
"(",
"self",
".",
"get_path",
"(",
"OslomRunner",
".",
"OUTPUT_FILE",
")",
",",
"\"r\"",
")",
"as",
"reader",
":",
... | Read and parse OSLOM clusters output file. | [
"Read",
"and",
"parse",
"OSLOM",
"clusters",
"output",
"file",
"."
] | python | train |
pyamg/pyamg | pyamg/gallery/elasticity.py | https://github.com/pyamg/pyamg/blob/89dc54aa27e278f65d2f54bdaf16ab97d7768fa6/pyamg/gallery/elasticity.py#L319-L331 | def p12d_local(vertices, lame, mu):
"""Local stiffness matrix for P1 elements in 2d."""
assert(vertices.shape == (3, 2))
A = np.vstack((np.ones((1, 3)), vertices.T))
PhiGrad = inv(A)[:, 1:] # gradients of basis functions
R = np.zeros((3, 6))
R[[[0], [2]], [0, 2, 4]] = PhiGrad.T
R[[[2], [1]... | [
"def",
"p12d_local",
"(",
"vertices",
",",
"lame",
",",
"mu",
")",
":",
"assert",
"(",
"vertices",
".",
"shape",
"==",
"(",
"3",
",",
"2",
")",
")",
"A",
"=",
"np",
".",
"vstack",
"(",
"(",
"np",
".",
"ones",
"(",
"(",
"1",
",",
"3",
")",
"... | Local stiffness matrix for P1 elements in 2d. | [
"Local",
"stiffness",
"matrix",
"for",
"P1",
"elements",
"in",
"2d",
"."
] | python | train |
gc3-uzh-ch/elasticluster | elasticluster/providers/gce.py | https://github.com/gc3-uzh-ch/elasticluster/blob/e6345633308c76de13b889417df572815aabe744/elasticluster/providers/gce.py#L213-L246 | def _wait_until_done(self, response, wait=30):
"""Blocks until the operation status is done for the given operation.
:param response: The response object used in a previous GCE call.
:param int wait: Wait up to this number of seconds in between
successive polling of th... | [
"def",
"_wait_until_done",
"(",
"self",
",",
"response",
",",
"wait",
"=",
"30",
")",
":",
"gce",
"=",
"self",
".",
"_connect",
"(",
")",
"status",
"=",
"response",
"[",
"'status'",
"]",
"while",
"status",
"!=",
"'DONE'",
"and",
"response",
":",
"# wai... | Blocks until the operation status is done for the given operation.
:param response: The response object used in a previous GCE call.
:param int wait: Wait up to this number of seconds in between
successive polling of the GCE status. | [
"Blocks",
"until",
"the",
"operation",
"status",
"is",
"done",
"for",
"the",
"given",
"operation",
"."
] | python | train |
google/dotty | efilter/transforms/solve.py | https://github.com/google/dotty/blob/b145131499be0c4b755fc2e2ac19be11a50bce6a/efilter/transforms/solve.py#L543-L560 | def solve_each(expr, vars):
"""Return True if RHS evaluates to a true value with each state of LHS.
If LHS evaluates to a normal IAssociative object then this is the same as
a regular let-form, except the return value is always a boolean. If LHS
evaluates to a repeared var (see efilter.protocols.repeat... | [
"def",
"solve_each",
"(",
"expr",
",",
"vars",
")",
":",
"lhs_values",
",",
"_",
"=",
"__solve_for_repeated",
"(",
"expr",
".",
"lhs",
",",
"vars",
")",
"for",
"lhs_value",
"in",
"repeated",
".",
"getvalues",
"(",
"lhs_values",
")",
":",
"result",
"=",
... | Return True if RHS evaluates to a true value with each state of LHS.
If LHS evaluates to a normal IAssociative object then this is the same as
a regular let-form, except the return value is always a boolean. If LHS
evaluates to a repeared var (see efilter.protocols.repeated) of
IAssociative objects the... | [
"Return",
"True",
"if",
"RHS",
"evaluates",
"to",
"a",
"true",
"value",
"with",
"each",
"state",
"of",
"LHS",
"."
] | python | train |
helixyte/everest | everest/resources/descriptors.py | https://github.com/helixyte/everest/blob/70c9b93c3061db5cb62428349d18b8fb8566411b/everest/resources/descriptors.py#L143-L160 | def make_relationship(self, relator,
direction=
RELATIONSHIP_DIRECTIONS.BIDIRECTIONAL):
"""
Create a relationship object for this attribute from the given
relator and relationship direction.
"""
if IEntity.providedBy(relator):... | [
"def",
"make_relationship",
"(",
"self",
",",
"relator",
",",
"direction",
"=",
"RELATIONSHIP_DIRECTIONS",
".",
"BIDIRECTIONAL",
")",
":",
"if",
"IEntity",
".",
"providedBy",
"(",
"relator",
")",
":",
"# pylint:disable=E1101",
"rel",
"=",
"DomainRelationship",
"("... | Create a relationship object for this attribute from the given
relator and relationship direction. | [
"Create",
"a",
"relationship",
"object",
"for",
"this",
"attribute",
"from",
"the",
"given",
"relator",
"and",
"relationship",
"direction",
"."
] | python | train |
openstack/quark | quark/plugin_modules/floating_ips.py | https://github.com/openstack/quark/blob/1112e6a66917d3e98e44cb7b33b107fd5a74bb2e/quark/plugin_modules/floating_ips.py#L139-L170 | def _create_flip(context, flip, port_fixed_ips):
"""Associates the flip with ports and creates it with the flip driver
:param context: neutron api request context.
:param flip: quark.db.models.IPAddress object representing a floating IP
:param port_fixed_ips: dictionary of the structure:
{"<id of p... | [
"def",
"_create_flip",
"(",
"context",
",",
"flip",
",",
"port_fixed_ips",
")",
":",
"if",
"port_fixed_ips",
":",
"context",
".",
"session",
".",
"begin",
"(",
")",
"try",
":",
"ports",
"=",
"[",
"val",
"[",
"'port'",
"]",
"for",
"val",
"in",
"port_fix... | Associates the flip with ports and creates it with the flip driver
:param context: neutron api request context.
:param flip: quark.db.models.IPAddress object representing a floating IP
:param port_fixed_ips: dictionary of the structure:
{"<id of port>": {"port": <quark.db.models.Port>,
"fixed_ip":... | [
"Associates",
"the",
"flip",
"with",
"ports",
"and",
"creates",
"it",
"with",
"the",
"flip",
"driver"
] | python | valid |
materialsproject/pymatgen | pymatgen/core/lattice.py | https://github.com/materialsproject/pymatgen/blob/4ca558cf72f8d5f8a1f21dfdfc0181a971c186da/pymatgen/core/lattice.py#L1274-L1330 | def get_integer_index(
miller_index: bool, round_dp: int = 4, verbose: bool = True
) -> Tuple[int, int, int]:
"""
Attempt to convert a vector of floats to whole numbers.
Args:
miller_index (list of float): A list miller indexes.
round_dp (int, optional): The number of decimal places to ... | [
"def",
"get_integer_index",
"(",
"miller_index",
":",
"bool",
",",
"round_dp",
":",
"int",
"=",
"4",
",",
"verbose",
":",
"bool",
"=",
"True",
")",
"->",
"Tuple",
"[",
"int",
",",
"int",
",",
"int",
"]",
":",
"miller_index",
"=",
"np",
".",
"asarray"... | Attempt to convert a vector of floats to whole numbers.
Args:
miller_index (list of float): A list miller indexes.
round_dp (int, optional): The number of decimal places to round the
miller index to.
verbose (bool, optional): Whether to print warnings.
Returns:
(tup... | [
"Attempt",
"to",
"convert",
"a",
"vector",
"of",
"floats",
"to",
"whole",
"numbers",
"."
] | python | train |
tanghaibao/jcvi | jcvi/annotation/reformat.py | https://github.com/tanghaibao/jcvi/blob/d2e31a77b6ade7f41f3b321febc2b4744d1cdeca/jcvi/annotation/reformat.py#L922-L931 | def parse_prefix(identifier):
"""
Parse identifier such as a|c|le|d|li|re|or|AT4G00480.1 and return
tuple of prefix string (separated at '|') and suffix (AGI identifier)
"""
pf, id = (), identifier
if "|" in identifier:
pf, id = tuple(identifier.split('|')[:-1]), identifier.split('|')[-1... | [
"def",
"parse_prefix",
"(",
"identifier",
")",
":",
"pf",
",",
"id",
"=",
"(",
")",
",",
"identifier",
"if",
"\"|\"",
"in",
"identifier",
":",
"pf",
",",
"id",
"=",
"tuple",
"(",
"identifier",
".",
"split",
"(",
"'|'",
")",
"[",
":",
"-",
"1",
"]... | Parse identifier such as a|c|le|d|li|re|or|AT4G00480.1 and return
tuple of prefix string (separated at '|') and suffix (AGI identifier) | [
"Parse",
"identifier",
"such",
"as",
"a|c|le|d|li|re|or|AT4G00480",
".",
"1",
"and",
"return",
"tuple",
"of",
"prefix",
"string",
"(",
"separated",
"at",
"|",
")",
"and",
"suffix",
"(",
"AGI",
"identifier",
")"
] | python | train |
hyperledger/indy-sdk | wrappers/python/indy/did.py | https://github.com/hyperledger/indy-sdk/blob/55240dc170308d7883c48f03f308130a6d077be6/wrappers/python/indy/did.py#L576-L605 | async def abbreviate_verkey(did: str,
full_verkey: str) -> str:
"""
Retrieves abbreviated verkey if it is possible otherwise return full verkey.
:param did: The DID.
:param full_verkey: The DIDs verification key,
:return: metadata: Either abbreviated or full verkey.
""... | [
"async",
"def",
"abbreviate_verkey",
"(",
"did",
":",
"str",
",",
"full_verkey",
":",
"str",
")",
"->",
"str",
":",
"logger",
"=",
"logging",
".",
"getLogger",
"(",
"__name__",
")",
"logger",
".",
"debug",
"(",
"\"abbreviate_verkey: >>> did: %r, full_verkey: %r\... | Retrieves abbreviated verkey if it is possible otherwise return full verkey.
:param did: The DID.
:param full_verkey: The DIDs verification key,
:return: metadata: Either abbreviated or full verkey. | [
"Retrieves",
"abbreviated",
"verkey",
"if",
"it",
"is",
"possible",
"otherwise",
"return",
"full",
"verkey",
"."
] | python | train |
elifesciences/elife-tools | elifetools/json_rewrite.py | https://github.com/elifesciences/elife-tools/blob/4b9e38cbe485c61a4ed7cbd8970c6b318334fd86/elifetools/json_rewrite.py#L54-L60 | def rewrite_references_json(json_content, rewrite_json):
""" general purpose references json rewriting by matching the id value """
for ref in json_content:
if ref.get("id") and ref.get("id") in rewrite_json:
for key, value in iteritems(rewrite_json.get(ref.get("id"))):
ref[k... | [
"def",
"rewrite_references_json",
"(",
"json_content",
",",
"rewrite_json",
")",
":",
"for",
"ref",
"in",
"json_content",
":",
"if",
"ref",
".",
"get",
"(",
"\"id\"",
")",
"and",
"ref",
".",
"get",
"(",
"\"id\"",
")",
"in",
"rewrite_json",
":",
"for",
"k... | general purpose references json rewriting by matching the id value | [
"general",
"purpose",
"references",
"json",
"rewriting",
"by",
"matching",
"the",
"id",
"value"
] | python | train |
fermiPy/fermipy | fermipy/castro.py | https://github.com/fermiPy/fermipy/blob/9df5e7e3728307fd58c5bba36fd86783c39fbad4/fermipy/castro.py#L896-L968 | def fit_spectrum(self, specFunc, initPars, freePars=None):
""" Fit for the free parameters of a spectral function
Parameters
----------
specFunc : `~fermipy.spectrum.SpectralFunction`
The Spectral Function
initPars : `~numpy.ndarray`
The initial values o... | [
"def",
"fit_spectrum",
"(",
"self",
",",
"specFunc",
",",
"initPars",
",",
"freePars",
"=",
"None",
")",
":",
"if",
"not",
"isinstance",
"(",
"specFunc",
",",
"SEDFunctor",
")",
":",
"specFunc",
"=",
"self",
".",
"create_functor",
"(",
"specFunc",
",",
"... | Fit for the free parameters of a spectral function
Parameters
----------
specFunc : `~fermipy.spectrum.SpectralFunction`
The Spectral Function
initPars : `~numpy.ndarray`
The initial values of the parameters
freePars : `~numpy.ndarray`
... | [
"Fit",
"for",
"the",
"free",
"parameters",
"of",
"a",
"spectral",
"function"
] | python | train |
aio-libs/aioftp | aioftp/client.py | https://github.com/aio-libs/aioftp/blob/b45395b1aba41301b898040acade7010e6878a08/aioftp/client.py#L812-L829 | async def exists(self, path):
"""
:py:func:`asyncio.coroutine`
Check path for existence.
:param path: path to check
:type path: :py:class:`str` or :py:class:`pathlib.PurePosixPath`
:rtype: :py:class:`bool`
"""
try:
await self.stat(path)
... | [
"async",
"def",
"exists",
"(",
"self",
",",
"path",
")",
":",
"try",
":",
"await",
"self",
".",
"stat",
"(",
"path",
")",
"return",
"True",
"except",
"errors",
".",
"StatusCodeError",
"as",
"e",
":",
"if",
"e",
".",
"received_codes",
"[",
"-",
"1",
... | :py:func:`asyncio.coroutine`
Check path for existence.
:param path: path to check
:type path: :py:class:`str` or :py:class:`pathlib.PurePosixPath`
:rtype: :py:class:`bool` | [
":",
"py",
":",
"func",
":",
"asyncio",
".",
"coroutine"
] | python | valid |
intake/intake | intake/gui/catalog/gui.py | https://github.com/intake/intake/blob/277b96bfdee39d8a3048ea5408c6d6716d568336/intake/gui/catalog/gui.py#L119-L130 | def callback(self, cats):
"""When a catalog is selected, enable widgets that depend on that condition
and do done_callback"""
enable = bool(cats)
if not enable:
# close search if it is visible
self.search.visible = False
enable_widget(self.search_widget, e... | [
"def",
"callback",
"(",
"self",
",",
"cats",
")",
":",
"enable",
"=",
"bool",
"(",
"cats",
")",
"if",
"not",
"enable",
":",
"# close search if it is visible",
"self",
".",
"search",
".",
"visible",
"=",
"False",
"enable_widget",
"(",
"self",
".",
"search_w... | When a catalog is selected, enable widgets that depend on that condition
and do done_callback | [
"When",
"a",
"catalog",
"is",
"selected",
"enable",
"widgets",
"that",
"depend",
"on",
"that",
"condition",
"and",
"do",
"done_callback"
] | python | train |
nicolargo/glances | glances/config.py | https://github.com/nicolargo/glances/blob/5bd4d587a736e0d2b03170b56926841d2a3eb7ee/glances/config.py#L297-L302 | def get_int_value(self, section, option, default=0):
"""Get the int value of an option, if it exists."""
try:
return self.parser.getint(section, option)
except NoOptionError:
return int(default) | [
"def",
"get_int_value",
"(",
"self",
",",
"section",
",",
"option",
",",
"default",
"=",
"0",
")",
":",
"try",
":",
"return",
"self",
".",
"parser",
".",
"getint",
"(",
"section",
",",
"option",
")",
"except",
"NoOptionError",
":",
"return",
"int",
"("... | Get the int value of an option, if it exists. | [
"Get",
"the",
"int",
"value",
"of",
"an",
"option",
"if",
"it",
"exists",
"."
] | python | train |
dnanexus/dx-toolkit | src/python/dxpy/api.py | https://github.com/dnanexus/dx-toolkit/blob/74befb53ad90fcf902d8983ae6d74580f402d619/src/python/dxpy/api.py#L1241-L1247 | def system_resolve_data_objects(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/resolveDataObjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/System-Methods#API-method:-/system/resolveDataObjects
"""
return DXHTTPRequest('/system/resolv... | [
"def",
"system_resolve_data_objects",
"(",
"input_params",
"=",
"{",
"}",
",",
"always_retry",
"=",
"True",
",",
"*",
"*",
"kwargs",
")",
":",
"return",
"DXHTTPRequest",
"(",
"'/system/resolveDataObjects'",
",",
"input_params",
",",
"always_retry",
"=",
"always_re... | Invokes the /system/resolveDataObjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/System-Methods#API-method:-/system/resolveDataObjects | [
"Invokes",
"the",
"/",
"system",
"/",
"resolveDataObjects",
"API",
"method",
"."
] | python | train |
Clinical-Genomics/scout | scout/adapter/mongo/hgnc.py | https://github.com/Clinical-Genomics/scout/blob/90a551e2e1653a319e654c2405c2866f93d0ebb9/scout/adapter/mongo/hgnc.py#L497-L513 | def to_hgnc(self, hgnc_alias, build='37'):
"""Check if a hgnc symbol is an alias
Return the correct hgnc symbol, if not existing return None
Args:
hgnc_alias(str)
Returns:
hgnc_symbol(str)
"""
result = self.hgnc_genes(hgnc_sy... | [
"def",
"to_hgnc",
"(",
"self",
",",
"hgnc_alias",
",",
"build",
"=",
"'37'",
")",
":",
"result",
"=",
"self",
".",
"hgnc_genes",
"(",
"hgnc_symbol",
"=",
"hgnc_alias",
",",
"build",
"=",
"build",
")",
"if",
"result",
":",
"for",
"gene",
"in",
"result",... | Check if a hgnc symbol is an alias
Return the correct hgnc symbol, if not existing return None
Args:
hgnc_alias(str)
Returns:
hgnc_symbol(str) | [
"Check",
"if",
"a",
"hgnc",
"symbol",
"is",
"an",
"alias"
] | python | test |
wtolson/gnsq | gnsq/nsqd.py | https://github.com/wtolson/gnsq/blob/0fd02578b2c9c5fa30626d78579db2a46c10edac/gnsq/nsqd.py#L205-L218 | def connect(self):
"""Initialize connection to the nsqd."""
if self.state == DISCONNECTED:
raise errors.NSQException('connection already closed')
if self.is_connected:
return
stream = Stream(self.address, self.port, self.timeout)
stream.connect()
... | [
"def",
"connect",
"(",
"self",
")",
":",
"if",
"self",
".",
"state",
"==",
"DISCONNECTED",
":",
"raise",
"errors",
".",
"NSQException",
"(",
"'connection already closed'",
")",
"if",
"self",
".",
"is_connected",
":",
"return",
"stream",
"=",
"Stream",
"(",
... | Initialize connection to the nsqd. | [
"Initialize",
"connection",
"to",
"the",
"nsqd",
"."
] | python | train |
Contraz/demosys-py | demosys/conf/__init__.py | https://github.com/Contraz/demosys-py/blob/6466128a3029c4d09631420ccce73024025bd5b6/demosys/conf/__init__.py#L69-L73 | def add_texture_dir(self, directory):
"""Hack in texture directory"""
dirs = list(self.TEXTURE_DIRS)
dirs.append(directory)
self.TEXTURE_DIRS = dirs | [
"def",
"add_texture_dir",
"(",
"self",
",",
"directory",
")",
":",
"dirs",
"=",
"list",
"(",
"self",
".",
"TEXTURE_DIRS",
")",
"dirs",
".",
"append",
"(",
"directory",
")",
"self",
".",
"TEXTURE_DIRS",
"=",
"dirs"
] | Hack in texture directory | [
"Hack",
"in",
"texture",
"directory"
] | python | valid |
googleapis/oauth2client | oauth2client/crypt.py | https://github.com/googleapis/oauth2client/blob/50d20532a748f18e53f7d24ccbe6647132c979a9/oauth2client/crypt.py#L154-L204 | def _verify_time_range(payload_dict):
"""Verifies the issued at and expiration from a JWT payload.
Makes sure the current time (in UTC) falls between the issued at and
expiration for the JWT (with some skew allowed for via
``CLOCK_SKEW_SECS``).
Args:
payload_dict: dict, A dictionary contai... | [
"def",
"_verify_time_range",
"(",
"payload_dict",
")",
":",
"# Get the current time to use throughout.",
"now",
"=",
"int",
"(",
"time",
".",
"time",
"(",
")",
")",
"# Make sure issued at and expiration are in the payload.",
"issued_at",
"=",
"payload_dict",
".",
"get",
... | Verifies the issued at and expiration from a JWT payload.
Makes sure the current time (in UTC) falls between the issued at and
expiration for the JWT (with some skew allowed for via
``CLOCK_SKEW_SECS``).
Args:
payload_dict: dict, A dictionary containing a JWT payload.
Raises:
AppI... | [
"Verifies",
"the",
"issued",
"at",
"and",
"expiration",
"from",
"a",
"JWT",
"payload",
"."
] | python | valid |
spyder-ide/spyder | spyder/plugins/help/plugin.py | https://github.com/spyder-ide/spyder/blob/f76836ce1b924bcc4efd3f74f2960d26a4e528e0/spyder/plugins/help/plugin.py#L218-L225 | def register_plugin(self):
"""Register plugin in Spyder's main window"""
self.focus_changed.connect(self.main.plugin_focus_changed)
self.main.add_dockwidget(self)
self.main.console.set_help(self)
self.internal_shell = self.main.console.shell
self.console = self.ma... | [
"def",
"register_plugin",
"(",
"self",
")",
":",
"self",
".",
"focus_changed",
".",
"connect",
"(",
"self",
".",
"main",
".",
"plugin_focus_changed",
")",
"self",
".",
"main",
".",
"add_dockwidget",
"(",
"self",
")",
"self",
".",
"main",
".",
"console",
... | Register plugin in Spyder's main window | [
"Register",
"plugin",
"in",
"Spyder",
"s",
"main",
"window"
] | python | train |
log2timeline/plaso | plaso/output/tln.py | https://github.com/log2timeline/plaso/blob/9c564698d2da3ffbe23607a3c54c0582ea18a6cc/plaso/output/tln.py#L173-L190 | def _FormatNotes(self, event):
"""Formats the notes.
Args:
event (EventObject): event.
Returns:
str: formatted notes field.
"""
inode = event.inode
if inode is None:
inode = '-'
notes = getattr(event, 'notes', '')
if not notes:
display_name = getattr(event, '... | [
"def",
"_FormatNotes",
"(",
"self",
",",
"event",
")",
":",
"inode",
"=",
"event",
".",
"inode",
"if",
"inode",
"is",
"None",
":",
"inode",
"=",
"'-'",
"notes",
"=",
"getattr",
"(",
"event",
",",
"'notes'",
",",
"''",
")",
"if",
"not",
"notes",
":"... | Formats the notes.
Args:
event (EventObject): event.
Returns:
str: formatted notes field. | [
"Formats",
"the",
"notes",
"."
] | python | train |
chrisspen/burlap | burlap/deploy.py | https://github.com/chrisspen/burlap/blob/a92b0a8e5206850bb777c74af8421ea8b33779bd/burlap/deploy.py#L32-L43 | def get_component_order(component_names):
"""
Given a list of components, re-orders them according to inter-component dependencies so the most depended upon are first.
"""
assert isinstance(component_names, (tuple, list))
component_dependences = {}
for _name in component_names:
deps = se... | [
"def",
"get_component_order",
"(",
"component_names",
")",
":",
"assert",
"isinstance",
"(",
"component_names",
",",
"(",
"tuple",
",",
"list",
")",
")",
"component_dependences",
"=",
"{",
"}",
"for",
"_name",
"in",
"component_names",
":",
"deps",
"=",
"set",
... | Given a list of components, re-orders them according to inter-component dependencies so the most depended upon are first. | [
"Given",
"a",
"list",
"of",
"components",
"re",
"-",
"orders",
"them",
"according",
"to",
"inter",
"-",
"component",
"dependencies",
"so",
"the",
"most",
"depended",
"upon",
"are",
"first",
"."
] | python | valid |
Jaymon/prom | prom/interface/sqlite.py | https://github.com/Jaymon/prom/blob/b7ad2c259eca198da03e1e4bc7d95014c168c361/prom/interface/sqlite.py#L553-L574 | def _normalize_sort_SQL(self, field_name, field_vals, sort_dir_str):
"""
allow sorting by a set of values
http://stackoverflow.com/questions/3303851/sqlite-and-custom-order-by
"""
fvi = None
if sort_dir_str == 'ASC':
fvi = (t for t in enumerate(field_vals))
... | [
"def",
"_normalize_sort_SQL",
"(",
"self",
",",
"field_name",
",",
"field_vals",
",",
"sort_dir_str",
")",
":",
"fvi",
"=",
"None",
"if",
"sort_dir_str",
"==",
"'ASC'",
":",
"fvi",
"=",
"(",
"t",
"for",
"t",
"in",
"enumerate",
"(",
"field_vals",
")",
")"... | allow sorting by a set of values
http://stackoverflow.com/questions/3303851/sqlite-and-custom-order-by | [
"allow",
"sorting",
"by",
"a",
"set",
"of",
"values"
] | python | train |
arlyon/hyperion | hyperion/api/util.py | https://github.com/arlyon/hyperion/blob/d8de0388ba98b85ce472e0f49ac18fecb14d3343/hyperion/api/util.py#L16-L35 | async def normalize_postcode_middleware(request, handler):
"""
If there is a postcode in the url it validates and normalizes it.
"""
postcode: Optional[str] = request.match_info.get('postcode', None)
if postcode is None or postcode == "random":
return await handler(request)
elif not is_... | [
"async",
"def",
"normalize_postcode_middleware",
"(",
"request",
",",
"handler",
")",
":",
"postcode",
":",
"Optional",
"[",
"str",
"]",
"=",
"request",
".",
"match_info",
".",
"get",
"(",
"'postcode'",
",",
"None",
")",
"if",
"postcode",
"is",
"None",
"or... | If there is a postcode in the url it validates and normalizes it. | [
"If",
"there",
"is",
"a",
"postcode",
"in",
"the",
"url",
"it",
"validates",
"and",
"normalizes",
"it",
"."
] | python | test |
facelessuser/backrefs | tools/unipropgen.py | https://github.com/facelessuser/backrefs/blob/3b3d60f5d57b02044f880aa29c9c5add0e31a34f/tools/unipropgen.py#L220-L266 | def gen_ccc(output, ascii_props=False, append=False, prefix=""):
"""Generate `canonical combining class` property."""
obj = {}
with codecs.open(os.path.join(HOME, 'unicodedata', UNIVERSION, 'DerivedCombiningClass.txt'), 'r', 'utf-8') as uf:
for line in uf:
if not line.startswith('#'):
... | [
"def",
"gen_ccc",
"(",
"output",
",",
"ascii_props",
"=",
"False",
",",
"append",
"=",
"False",
",",
"prefix",
"=",
"\"\"",
")",
":",
"obj",
"=",
"{",
"}",
"with",
"codecs",
".",
"open",
"(",
"os",
".",
"path",
".",
"join",
"(",
"HOME",
",",
"'un... | Generate `canonical combining class` property. | [
"Generate",
"canonical",
"combining",
"class",
"property",
"."
] | python | train |
drkjam/pydba | pydba/postgres.py | https://github.com/drkjam/pydba/blob/986c4b1315d6b128947c3bc3494513d8e5380ff0/pydba/postgres.py#L276-L291 | def shell(self, expect=pexpect):
"""
Connects the database client shell to the database.
Parameters
----------
expect_module: str
the database to which backup will be restored.
"""
dsn = self.connection_dsn()
log.debug('connection string: %s' ... | [
"def",
"shell",
"(",
"self",
",",
"expect",
"=",
"pexpect",
")",
":",
"dsn",
"=",
"self",
".",
"connection_dsn",
"(",
")",
"log",
".",
"debug",
"(",
"'connection string: %s'",
"%",
"dsn",
")",
"child",
"=",
"expect",
".",
"spawn",
"(",
"'psql \"%s\"'",
... | Connects the database client shell to the database.
Parameters
----------
expect_module: str
the database to which backup will be restored. | [
"Connects",
"the",
"database",
"client",
"shell",
"to",
"the",
"database",
"."
] | python | valid |
twilio/twilio-python | twilio/jwt/__init__.py | https://github.com/twilio/twilio-python/blob/c867895f55dcc29f522e6e8b8868d0d18483132f/twilio/jwt/__init__.py#L131-L152 | def from_jwt(cls, jwt, key=''):
"""
Decode a JWT string into a Jwt object
:param str jwt: JWT string
:param Optional[str] key: key used to verify JWT signature, if not provided then validation
is skipped.
:raises JwtDecodeError if decoding JWT fa... | [
"def",
"from_jwt",
"(",
"cls",
",",
"jwt",
",",
"key",
"=",
"''",
")",
":",
"verify",
"=",
"True",
"if",
"key",
"else",
"False",
"try",
":",
"payload",
"=",
"jwt_lib",
".",
"decode",
"(",
"bytes",
"(",
"jwt",
")",
",",
"key",
",",
"options",
"=",... | Decode a JWT string into a Jwt object
:param str jwt: JWT string
:param Optional[str] key: key used to verify JWT signature, if not provided then validation
is skipped.
:raises JwtDecodeError if decoding JWT fails for any reason.
:return: A DecodedJwt ob... | [
"Decode",
"a",
"JWT",
"string",
"into",
"a",
"Jwt",
"object",
":",
"param",
"str",
"jwt",
":",
"JWT",
"string",
":",
"param",
"Optional",
"[",
"str",
"]",
"key",
":",
"key",
"used",
"to",
"verify",
"JWT",
"signature",
"if",
"not",
"provided",
"then",
... | python | train |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.