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vicalloy/lbutils
lbutils/templatetags/lbutils.py
https://github.com/vicalloy/lbutils/blob/66ae7e73bc939f073cdc1b91602a95e67caf4ba6/lbutils/templatetags/lbutils.py#L12-L26
def get_setting(context, key, default_val="", as_key=None): """ get val form settings and set to context {% load lbutils %} {% get_setting "key" default_val "as_key" %} {{ as_key }} if as_key is None, this tag will return val """ if ("%s" % default_val).startswith('$.'): ...
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get val form settings and set to context {% load lbutils %} {% get_setting "key" default_val "as_key" %} {{ as_key }} if as_key is None, this tag will return val
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python
train
Hackerfleet/hfos
hfos/tool/objects.py
https://github.com/Hackerfleet/hfos/blob/b6df14eacaffb6be5c844108873ff8763ec7f0c9/hfos/tool/objects.py#L118-L150
def delete(ctx, schema, uuid, object_filter, yes): """Delete stored objects (CAUTION!)""" database = ctx.obj['db'] if schema is None: log('No schema given. Read the help', lvl=warn) return model = database.objectmodels[schema] if uuid: count = model.count({'uuid': uuid}) ...
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Delete stored objects (CAUTION!)
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python
train
willhardy/django-seo
rollyourown/seo/admin.py
https://github.com/willhardy/django-seo/blob/3089686a3c490091315860979ad15ef2527c3e3e/rollyourown/seo/admin.py#L187-L196
def core_choice_fields(metadata_class): """ If the 'optional' core fields (_site and _language) are required, list them here. """ fields = [] if metadata_class._meta.use_sites: fields.append('_site') if metadata_class._meta.use_i18n: fields.append('_language') return fi...
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If the 'optional' core fields (_site and _language) are required, list them here.
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python
train
ohenrik/tabs
tabs/tables.py
https://github.com/ohenrik/tabs/blob/039ced6c5612ecdd551aeaac63789862aba05711/tabs/tables.py#L223-L235
def fetch(self, rebuild=False, cache=True): """Fetches the table and applies all post processors. Args: rebuild (bool): Rebuild the table and ignore cache. Default: False cache (bool): Cache the finished table for faster future loading. Default: True """ ...
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Fetches the table and applies all post processors. Args: rebuild (bool): Rebuild the table and ignore cache. Default: False cache (bool): Cache the finished table for faster future loading. Default: True
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python
train
dpkp/kafka-python
kafka/conn.py
https://github.com/dpkp/kafka-python/blob/f6a8a38937688ea2cc5dc13d3d1039493be5c9b5/kafka/conn.py#L733-L741
def blacked_out(self): """ Return true if we are disconnected from the given node and can't re-establish a connection yet """ if self.state is ConnectionStates.DISCONNECTED: if time.time() < self.last_attempt + self._reconnect_backoff: return True ...
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Return true if we are disconnected from the given node and can't re-establish a connection yet
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python
train
romanz/trezor-agent
libagent/gpg/decode.py
https://github.com/romanz/trezor-agent/blob/513b1259c4d7aca5f88cd958edc11828d0712f1b/libagent/gpg/decode.py#L193-L197
def _parse_user_id(stream, packet_type='user_id'): """See https://tools.ietf.org/html/rfc4880#section-5.11 for details.""" value = stream.read() to_hash = b'\xb4' + util.prefix_len('>L', value) return {'type': packet_type, 'value': value, '_to_hash': to_hash}
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See https://tools.ietf.org/html/rfc4880#section-5.11 for details.
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python
train
orb-framework/orb
orb/core/database.py
https://github.com/orb-framework/orb/blob/575be2689cb269e65a0a2678232ff940acc19e5a/orb/core/database.py#L66-L75
def activate(self, manager=None): """ Activates this database within the given orb instance. This will register the database to orb and then set it as the active one. :param manager | <orb.Manager> """ manager = manager or orb.system manager.activat...
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Activates this database within the given orb instance. This will register the database to orb and then set it as the active one. :param manager | <orb.Manager>
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python
train
LISE-B26/pylabcontrol
pylabcontrol/scripts/select_points.py
https://github.com/LISE-B26/pylabcontrol/blob/67482e5157fcd1c40705e5c2cacfb93564703ed0/pylabcontrol/scripts/select_points.py#L120-L253
def toggle_NV(self, pt): ''' If there is not currently a selected NV within self.settings[patch_size] of pt, adds it to the selected list. If there is, removes that point from the selected list. Args: pt: the point to add or remove from the selected list Poststate: up...
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If there is not currently a selected NV within self.settings[patch_size] of pt, adds it to the selected list. If there is, removes that point from the selected list. Args: pt: the point to add or remove from the selected list Poststate: updates selected list
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python
train
klen/pylama
pylama/config.py
https://github.com/klen/pylama/blob/f436ccc6b55b33381a295ded753e467953cf4379/pylama/config.py#L242-L258
def get_config(ini_path=None, rootdir=None): """ Load configuration from INI. :return Namespace: """ config = Namespace() config.default_section = 'pylama' if not ini_path: path = get_default_config_file(rootdir) if path: config.read(path) else: config....
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Load configuration from INI. :return Namespace:
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python
train
iotile/coretools
iotilebuild/iotile/build/config/scons-local-3.0.1/SCons/Tool/packaging/msi.py
https://github.com/iotile/coretools/blob/2d794f5f1346b841b0dcd16c9d284e9bf2f3c6ec/iotilebuild/iotile/build/config/scons-local-3.0.1/SCons/Tool/packaging/msi.py#L225-L265
def create_default_directory_layout(root, NAME, VERSION, VENDOR, filename_set): """ Create the wix default target directory layout and return the innermost directory. We assume that the XML tree delivered in the root argument already contains the Product tag. Everything is put under the PFiles dir...
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Create the wix default target directory layout and return the innermost directory. We assume that the XML tree delivered in the root argument already contains the Product tag. Everything is put under the PFiles directory property defined by WiX. After that a directory with the 'VENDOR' tag is pla...
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python
train
prompt-toolkit/ptpython
ptpython/eventloop.py
https://github.com/prompt-toolkit/ptpython/blob/b1bba26a491324cd65e0ef46c7b818c4b88fd993/ptpython/eventloop.py#L18-L64
def _inputhook_tk(inputhook_context): """ Inputhook for Tk. Run the Tk eventloop until prompt-toolkit needs to process the next input. """ # Get the current TK application. import _tkinter # Keep this imports inline! from six.moves import tkinter root = tkinter._default_root def wa...
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Inputhook for Tk. Run the Tk eventloop until prompt-toolkit needs to process the next input.
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python
train
knipknap/SpiffWorkflow
SpiffWorkflow/bpmn/workflow.py
https://github.com/knipknap/SpiffWorkflow/blob/f0af7f59a332e0619e4f3c00a7d4a3d230760e00/SpiffWorkflow/bpmn/workflow.py#L90-L95
def get_ready_user_tasks(self): """ Returns a list of User Tasks that are READY for user action """ return [t for t in self.get_tasks(Task.READY) if not self._is_engine_task(t.task_spec)]
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Returns a list of User Tasks that are READY for user action
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python
valid
carpedm20/ndrive
ndrive/models.py
https://github.com/carpedm20/ndrive/blob/ac58eaf8a8d46292ad752bb38047f65838b8ad2b/ndrive/models.py#L368-L398
def put(self, file_path, upload_path = ''): """PUT Args: file_path: Full path for a file you want to upload upload_path: Ndrive path where you want to upload file ex) /Picture/ Returns: True: Upload success False: Upload failed ...
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PUT Args: file_path: Full path for a file you want to upload upload_path: Ndrive path where you want to upload file ex) /Picture/ Returns: True: Upload success False: Upload failed
[ "PUT" ]
python
train
saltstack/salt
salt/cloud/clouds/softlayer_hw.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/cloud/clouds/softlayer_hw.py#L619-L643
def show_all_prices(call=None, kwargs=None): ''' Return a dict of all prices on the cloud provider. ''' if call == 'action': raise SaltCloudSystemExit( 'The show_all_prices function must be called with -f or --function.' ) if kwargs is None: kwargs = {} conn...
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Return a dict of all prices on the cloud provider.
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python
train
NiklasRosenstein-Python/nr-deprecated
nr/concurrency.py
https://github.com/NiklasRosenstein-Python/nr-deprecated/blob/f9f8b89ea1b084841a8ab65784eaf68852686b2a/nr/concurrency.py#L841-L892
def submit(self, target=None, task=None, args=(), kwargs=None, front=False, dispose_inputs=None): """ Submit a new #Job to the ThreadPool. # Arguments task (function, Job): Either a function that accepts a #Job, *args* and *kwargs* or a #Job object that is in #~Job.PENDING state. ...
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Submit a new #Job to the ThreadPool. # Arguments task (function, Job): Either a function that accepts a #Job, *args* and *kwargs* or a #Job object that is in #~Job.PENDING state. target (function): A function object that accepts *args* and *kwargs*. Only if *task* is not specified. args (li...
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python
train
googlefonts/fontbakery
Lib/fontbakery/profiles/universal.py
https://github.com/googlefonts/fontbakery/blob/b355aea2e619a4477769e060d24c32448aa65399/Lib/fontbakery/profiles/universal.py#L877-L946
def com_google_fonts_check_ttx_roundtrip(font): """Checking with fontTools.ttx""" from fontTools import ttx import sys ttFont = ttx.TTFont(font) failed = False class TTXLogger: msgs = [] def __init__(self): self.original_stderr = sys.stderr self.original_stdout = sys.stdout sys.s...
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Checking with fontTools.ttx
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python
train
hydpy-dev/hydpy
hydpy/models/lland/lland_model.py
https://github.com/hydpy-dev/hydpy/blob/1bc6a82cf30786521d86b36e27900c6717d3348d/hydpy/models/lland/lland_model.py#L669-L729
def calc_wada_waes_v1(self): """Calculate the actual water release from the snow cover. Required control parameters: |NHRU| |Lnk| |PWMax| Required flux sequences: |NBes| Calculated flux sequence: |WaDa| Updated state sequence: |WAeS| Basic equations: ...
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Calculate the actual water release from the snow cover. Required control parameters: |NHRU| |Lnk| |PWMax| Required flux sequences: |NBes| Calculated flux sequence: |WaDa| Updated state sequence: |WAeS| Basic equations: :math:`\\frac{dWAeS}{dt} = NBes - ...
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python
train
ndokter/dsmr_parser
dsmr_parser/__main__.py
https://github.com/ndokter/dsmr_parser/blob/c04b0a5add58ce70153eede1a87ca171876b61c7/dsmr_parser/__main__.py#L9-L65
def console(): """Output DSMR data to console.""" parser = argparse.ArgumentParser(description=console.__doc__) parser.add_argument('--device', default='/dev/ttyUSB0', help='port to read DSMR data from') parser.add_argument('--host', default=None, help='a...
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Output DSMR data to console.
[ "Output", "DSMR", "data", "to", "console", "." ]
python
test
facelessuser/soupsieve
soupsieve/css_match.py
https://github.com/facelessuser/soupsieve/blob/24859cc3e756ebf46b75547d49c6b4a7bf35ee82/soupsieve/css_match.py#L348-L354
def validate_week(year, week): """Validate week.""" max_week = datetime.strptime("{}-{}-{}".format(12, 31, year), "%m-%d-%Y").isocalendar()[1] if max_week == 1: max_week = 53 return 1 <= week <= max_week
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Validate week.
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python
train
jedie/DragonPy
PyDC/PyDC/utils.py
https://github.com/jedie/DragonPy/blob/6659e5b5133aab26979a498ee7453495773a4f6c/PyDC/PyDC/utils.py#L185-L208
def count_continuous_pattern(bitstream, pattern): """ >>> pattern = list(bytes2bit_strings("A")) >>> bitstream = bytes2bit_strings("AAAXXX") >>> count_continuous_pattern(bitstream, pattern) 3 >>> pattern = list(bytes2bit_strings("X")) >>> bitstream = bytes2bit_strings("AAAXXX") >>> coun...
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>>> pattern = list(bytes2bit_strings("A")) >>> bitstream = bytes2bit_strings("AAAXXX") >>> count_continuous_pattern(bitstream, pattern) 3 >>> pattern = list(bytes2bit_strings("X")) >>> bitstream = bytes2bit_strings("AAAXXX") >>> count_continuous_pattern(bitstream, pattern) 0
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python
train
jantman/awslimitchecker
awslimitchecker/services/ses.py
https://github.com/jantman/awslimitchecker/blob/e50197f70f3d0abcc5cfc7fde6336f548b790e34/awslimitchecker/services/ses.py#L104-L120
def _update_limits_from_api(self): """ Call the service's API action to retrieve limit/quota information, and update AwsLimit objects in ``self.limits`` with this information. """ try: self.connect() resp = self.conn.get_send_quota() except Endpoin...
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Call the service's API action to retrieve limit/quota information, and update AwsLimit objects in ``self.limits`` with this information.
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python
train
a1ezzz/wasp-general
wasp_general/uri.py
https://github.com/a1ezzz/wasp-general/blob/1029839d33eb663f8dec76c1c46754d53c1de4a9/wasp_general/uri.py#L150-L168
def parse(cls, uri): """ Parse URI-string and return WURI object :param uri: string to parse :return: WURI """ uri_components = urlsplit(uri) adapter_fn = lambda x: x if x is not None and (isinstance(x, str) is False or len(x)) > 0 else None return cls( scheme=adapter_fn(uri_components.scheme), us...
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Parse URI-string and return WURI object :param uri: string to parse :return: WURI
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python
train
bcbio/bcbio-nextgen
bcbio/variation/cortex.py
https://github.com/bcbio/bcbio-nextgen/blob/6a9348c0054ccd5baffd22f1bb7d0422f6978b20/bcbio/variation/cortex.py#L97-L120
def _combine_variants(in_vcfs, out_file, ref_file, config): """Combine variant files, writing the header from the first non-empty input. in_vcfs is a list with each item starting with the chromosome regions, and ending with the input file. We sort by these regions to ensure the output file is in the ex...
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Combine variant files, writing the header from the first non-empty input. in_vcfs is a list with each item starting with the chromosome regions, and ending with the input file. We sort by these regions to ensure the output file is in the expected order.
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python
train
radjkarl/imgProcessor
imgProcessor/simulate/navierStokes.py
https://github.com/radjkarl/imgProcessor/blob/7c5a28718f81c01a430152c60a686ac50afbfd7c/imgProcessor/simulate/navierStokes.py#L52-L62
def shiftImage(u, v, t, img, interpolation=cv2.INTER_LANCZOS4): ''' remap an image using velocity field ''' ny,nx = u.shape sy, sx = np.mgrid[:float(ny):1,:float(nx):1] sx += u*t sy += v*t return cv2.remap(img.astype(np.float32), (sx).astype(np.float32), ...
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remap an image using velocity field
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python
train
ARMmbed/mbed-cloud-sdk-python
src/mbed_cloud/_backends/iam/apis/aggregator_account_admin_api.py
https://github.com/ARMmbed/mbed-cloud-sdk-python/blob/c0af86fb2cdd4dc7ed26f236139241067d293509/src/mbed_cloud/_backends/iam/apis/aggregator_account_admin_api.py#L151-L172
def add_account_certificate(self, account_id, body, **kwargs): # noqa: E501 """Upload new trusted certificate. # noqa: E501 An endpoint for uploading new trusted certificates. **Example usage:** `curl -X POST https://api.us-east-1.mbedcloud.com/v3/accounts/{accountID}/trusted-certificates -d {\"nam...
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Upload new trusted certificate. # noqa: E501 An endpoint for uploading new trusted certificates. **Example usage:** `curl -X POST https://api.us-east-1.mbedcloud.com/v3/accounts/{accountID}/trusted-certificates -d {\"name\": \"myCert1\", \"description\": \"very important cert\", \"certificate\": \"certifica...
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python
train
underscorephil/dayonelib
dayonelib/__init__.py
https://github.com/underscorephil/dayonelib/blob/4df134f601abcb033ec04cf7596f25ee25d44661/dayonelib/__init__.py#L41-L47
def add_tag(self, _tags): """Add tag(s) to a DayOneEntry""" if isinstance(_tags, list): for t in _tags: self.tags.append(t) else: self.tags.append(_tags)
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Add tag(s) to a DayOneEntry
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python
valid
msmbuilder/msmbuilder
msmbuilder/utils/nearest.py
https://github.com/msmbuilder/msmbuilder/blob/556a93a170782f47be53f4a1e9d740fb1c8272b3/msmbuilder/utils/nearest.py#L73-L125
def query(self, x, k=1, p=2, distance_upper_bound=np.inf): """Query the kd-tree for nearest neighbors Parameters ---------- x : array_like, last dimension self.m An array of points to query. k : int, optional The number of nearest neighbors to return. ...
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Query the kd-tree for nearest neighbors Parameters ---------- x : array_like, last dimension self.m An array of points to query. k : int, optional The number of nearest neighbors to return. eps : nonnegative float, optional Return approximate ...
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python
train
kubernetes-client/python
kubernetes/client/apis/core_v1_api.py
https://github.com/kubernetes-client/python/blob/5e512ff564c244c50cab780d821542ed56aa965a/kubernetes/client/apis/core_v1_api.py#L13114-L13141
def list_namespaced_service_account(self, namespace, **kwargs): """ list or watch objects of kind ServiceAccount This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True >>> thread = api.list_namespaced_service_acco...
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list or watch objects of kind ServiceAccount This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True >>> thread = api.list_namespaced_service_account(namespace, async_req=True) >>> result = thread.get() :param asy...
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python
train
ShadowBlip/Neteria
neteria/server.py
https://github.com/ShadowBlip/Neteria/blob/1a8c976eb2beeca0a5a272a34ac58b2c114495a4/neteria/server.py#L432-L451
def is_registered(self, cuuid, host): """This function will check to see if a given host with client uuid is currently registered. Args: cuuid (string): The client uuid that wishes to register. host (tuple): The (address, port) tuple of the client that is registe...
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This function will check to see if a given host with client uuid is currently registered. Args: cuuid (string): The client uuid that wishes to register. host (tuple): The (address, port) tuple of the client that is registering. Returns: Will return Tru...
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python
train
inspirehep/inspire-schemas
inspire_schemas/builders/authors.py
https://github.com/inspirehep/inspire-schemas/blob/34bc124b62fba565b6b40d1a3c15103a23a05edb/inspire_schemas/builders/authors.py#L350-L378
def add_advisor(self, name, ids=None, degree_type=None, record=None, curated=False): """Add an advisor. Args: :param name: full name of the advisor. :type name: string :param ids: list with the IDs of the advisor. :type ids: list :param degr...
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Add an advisor. Args: :param name: full name of the advisor. :type name: string :param ids: list with the IDs of the advisor. :type ids: list :param degree_type: one of the allowed types of degree the advisor helped with. :type degree_ty...
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python
train
lpantano/seqcluster
seqcluster/libs/thinkbayes.py
https://github.com/lpantano/seqcluster/blob/774e23add8cd4fdc83d626cea3bd1f458e7d060d/seqcluster/libs/thinkbayes.py#L764-L776
def MakePmfFromDict(d, name=''): """Makes a PMF from a map from values to probabilities. Args: d: dictionary that maps values to probabilities name: string name for this PMF Returns: Pmf object """ pmf = Pmf(d, name) pmf.Normalize() return pmf
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python
train
chemlab/chemlab
chemlab/io/handlers/gamess.py
https://github.com/chemlab/chemlab/blob/c8730966316d101e24f39ac3b96b51282aba0abe/chemlab/io/handlers/gamess.py#L67-L77
def _parse_geometry(self, geom): """Parse a geometry string and return Molecule object from it. """ atoms = [] for i, line in enumerate(geom.splitlines()): sym, atno, x, y, z = line.split() atoms.append(Atom(sym, [float(x), float(y), float(z)], id=i)) ...
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Parse a geometry string and return Molecule object from it.
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python
train
saltstack/salt
salt/pillar/mongo.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/pillar/mongo.py#L89-L165
def ext_pillar(minion_id, pillar, # pylint: disable=W0613 collection='pillar', id_field='_id', re_pattern=None, re_replace='', fields=None): ''' Connect to a mongo database and read per-node pillar information. Param...
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Connect to a mongo database and read per-node pillar information. Parameters: * `collection`: The mongodb collection to read data from. Defaults to ``'pillar'``. * `id_field`: The field in the collection that represents an individual minion id. Defaults to ``'_id'``. * `...
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python
train
saltstack/salt
salt/modules/bigip.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/bigip.py#L138-L159
def _determine_toggles(payload, toggles): ''' BigIP can't make up its mind if it likes yes / no or true or false. Figure out what it likes to hear without confusing the user. ''' for toggle, definition in six.iteritems(toggles): #did the user specify anything? if definition['value']...
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BigIP can't make up its mind if it likes yes / no or true or false. Figure out what it likes to hear without confusing the user.
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python
train
lowandrew/OLCTools
spadespipeline/skesa.py
https://github.com/lowandrew/OLCTools/blob/88aa90ac85f84d0bbeb03e43c29b0a9d36e4ce2a/spadespipeline/skesa.py#L96-L156
def merge(self, sample): """ Use bbmerge to merge paired FASTQ files for use in metagenomics pipelines. Create a report with the total number of reads, and the number of reads that could be paired :param sample: metadata sample object flagged as a metagenome """ # Set the...
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Use bbmerge to merge paired FASTQ files for use in metagenomics pipelines. Create a report with the total number of reads, and the number of reads that could be paired :param sample: metadata sample object flagged as a metagenome
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python
train
spacetelescope/drizzlepac
drizzlepac/util.py
https://github.com/spacetelescope/drizzlepac/blob/15bec3c929a6a869d9e71b9398ced43ede0620f1/drizzlepac/util.py#L51-L76
def get_pool_size(usr_config_value, num_tasks): """ Determine size of thread/process-pool for parallel processing. This examines the cpu_count to decide and return the right pool size to use. Also take into account the user's wishes via the config object value, if specified. On top of that, don't allo...
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Determine size of thread/process-pool for parallel processing. This examines the cpu_count to decide and return the right pool size to use. Also take into account the user's wishes via the config object value, if specified. On top of that, don't allow the pool size returned to be any higher than the n...
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python
train
vanheeringen-lab/gimmemotifs
gimmemotifs/motif.py
https://github.com/vanheeringen-lab/gimmemotifs/blob/1dc0572179e5d0c8f96958060133c1f8d92c6675/gimmemotifs/motif.py#L1149-L1178
def parse_motifs(motifs): """Parse motifs in a variety of formats to return a list of motifs. Parameters ---------- motifs : list or str Filename of motif, list of motifs or single Motif instance. Returns ------- motifs : list List of Motif instances. """ if isin...
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Parse motifs in a variety of formats to return a list of motifs. Parameters ---------- motifs : list or str Filename of motif, list of motifs or single Motif instance. Returns ------- motifs : list List of Motif instances.
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python
train
chaoss/grimoirelab-perceval-mozilla
perceval/backends/mozilla/crates.py
https://github.com/chaoss/grimoirelab-perceval-mozilla/blob/4514f8d3d609d3cb79d83c72d51fcc4b4a7daeb4/perceval/backends/mozilla/crates.py#L329-L334
def fetch(self, url, payload=None): """Return the textual content associated to the Response object""" response = super().fetch(url, payload=payload) return response.text
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Return the textual content associated to the Response object
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python
test
lago-project/lago
lago/virt.py
https://github.com/lago-project/lago/blob/5b8970f7687e063e4619066d5b8093ca997678c9/lago/virt.py#L232-L293
def generate_init(self, dst, out_format, vms_to_include, filters=None): """ Generate an init file which represents this env and can be used with the images created by self.export_vms Args: dst (str): path and name of the new init file out_format (plugins.output.Ou...
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Generate an init file which represents this env and can be used with the images created by self.export_vms Args: dst (str): path and name of the new init file out_format (plugins.output.OutFormatPlugin): formatter for the output (the default is yaml) f...
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python
train
fprimex/zdesk
zdesk/zdesk_api.py
https://github.com/fprimex/zdesk/blob/851611c13b4d530e9df31390b3ec709baf0a0188/zdesk/zdesk_api.py#L3406-L3409
def ticket_create(self, data, **kwargs): "https://developer.zendesk.com/rest_api/docs/core/tickets#create-ticket" api_path = "/api/v2/tickets.json" return self.call(api_path, method="POST", data=data, **kwargs)
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https://developer.zendesk.com/rest_api/docs/core/tickets#create-ticket
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python
train
Erotemic/utool
utool/util_arg.py
https://github.com/Erotemic/utool/blob/3b27e1f4e6e6fb23cd8744af7b7195b57d99e03a/utool/util_arg.py#L1068-L1127
def get_argv_tail(scriptname, prefer_main=None, argv=None): r""" gets the rest of the arguments after a script has been invoked hack. accounts for python -m scripts. Args: scriptname (str): CommandLine: python -m utool.util_arg --test-get_argv_tail Example: >>> # ENABL...
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r""" gets the rest of the arguments after a script has been invoked hack. accounts for python -m scripts. Args: scriptname (str): CommandLine: python -m utool.util_arg --test-get_argv_tail Example: >>> # ENABLE_DOCTEST >>> from utool.util_arg import * # NOQA ...
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python
train
gnarlychicken/aiohttp_auth
aiohttp_auth/auth/auth.py
https://github.com/gnarlychicken/aiohttp_auth/blob/3d55236889fb14b662279b050de18d43842bb886/aiohttp_auth/auth/auth.py#L10-L36
def auth_middleware(policy): """Returns a aiohttp_auth middleware factory for use by the aiohttp application object. Args: policy: A authentication policy with a base class of AbstractAuthentication. """ assert isinstance(policy, AbstractAuthentication) async def _auth_midd...
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Returns a aiohttp_auth middleware factory for use by the aiohttp application object. Args: policy: A authentication policy with a base class of AbstractAuthentication.
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python
train
awslabs/sockeye
sockeye/embeddings.py
https://github.com/awslabs/sockeye/blob/5d64a1ee1ef3cbba17c6d1d94bc061020c43f6ab/sockeye/embeddings.py#L57-L72
def nearest_k(similarity_matrix: mx.nd.NDArray, query_word_id: int, k: int, gamma: float = 1.0) -> Iterable[Tuple[int, float]]: """ Returns values and indices of k items with largest similarity. :param similarity_matrix: Similarity matrix. :param query_word_id:...
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Returns values and indices of k items with largest similarity. :param similarity_matrix: Similarity matrix. :param query_word_id: Query word id. :param k: Number of closest items to retrieve. :param gamma: Parameter to control distribution steepness. :return: List of indices and values of k nearest...
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python
train
dicaso/leopard
leopard/__init__.py
https://github.com/dicaso/leopard/blob/ee9f45251aaacd1e453b135b419f4f0b50fb036e/leopard/__init__.py#L462-L502
def getReportTable(reportzipfile,tablefilename,inReportsDir=True,verbose=False): """Get a pandas table from a previous report Args: reportzipfile (str): Zip folder location, '.zip' extension is optional. tablefilename (str or list int): Table location within the zip folder. ...
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Get a pandas table from a previous report Args: reportzipfile (str): Zip folder location, '.zip' extension is optional. tablefilename (str or list int): Table location within the zip folder. Can be provided as the filename within the zip folder, or a list of integers ...
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python
train
SheffieldML/GPy
GPy/kern/src/sde_matern.py
https://github.com/SheffieldML/GPy/blob/54c32d79d289d622fb18b898aee65a2a431d90cf/GPy/kern/src/sde_matern.py#L94-L137
def sde(self): """ Return the state space representation of the covariance. """ variance = float(self.variance.values) lengthscale = float(self.lengthscale.values) lamda = np.sqrt(5.0)/lengthscale kappa = 5.0/3.0*variance/lengthscale**2 ...
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Return the state space representation of the covariance.
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python
train
jobovy/galpy
galpy/potential/interpRZPotential.py
https://github.com/jobovy/galpy/blob/9c5b9fe65d58835624dffe432be282060918ee08/galpy/potential/interpRZPotential.py#L572-L599
def calc_2dsplinecoeffs_c(array2d): """ NAME: calc_2dsplinecoeffs_c PURPOSE: Use C to calculate spline coefficients for a 2D array INPUT: array2d OUTPUT: new array with spline coeffs HISTORY: 2013-01-24 - Written - Bovy (IAS) """ #Set up result arrays ...
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NAME: calc_2dsplinecoeffs_c PURPOSE: Use C to calculate spline coefficients for a 2D array INPUT: array2d OUTPUT: new array with spline coeffs HISTORY: 2013-01-24 - Written - Bovy (IAS)
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python
train
michael-lazar/rtv
rtv/packages/praw/__init__.py
https://github.com/michael-lazar/rtv/blob/ccef2af042566ad384977028cf0bde01bc524dda/rtv/packages/praw/__init__.py#L750-L766
def set_oauth_app_info(self, client_id, client_secret, redirect_uri): """Set the app information to use with OAuth2. This function need only be called if your praw.ini site configuration does not already contain the necessary information. Go to https://www.reddit.com/prefs/apps/ to dis...
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Set the app information to use with OAuth2. This function need only be called if your praw.ini site configuration does not already contain the necessary information. Go to https://www.reddit.com/prefs/apps/ to discover the appropriate values for your application. :param client...
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python
train
Nic30/hwt
hwt/synthesizer/rtlLevel/rtlSignal.py
https://github.com/Nic30/hwt/blob/8cbb399e326da3b22c233b98188a9d08dec057e6/hwt/synthesizer/rtlLevel/rtlSignal.py#L106-L117
def singleDriver(self): """ Returns a first driver if signal has only one driver. """ # [TODO] no driver exception drv_cnt = len(self.drivers) if not drv_cnt: raise NoDriverErr(self) elif drv_cnt != 1: raise MultipleDriversErr(self) ...
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Returns a first driver if signal has only one driver.
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python
test
saltstack/salt
salt/modules/file.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/file.py#L4336-L4563
def extract_hash(hash_fn, hash_type='sha256', file_name='', source='', source_hash_name=None): ''' .. versionchanged:: 2016.3.5 Prior to this version, only the ``file_name`` argument was considered for filename matches in the ha...
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.. versionchanged:: 2016.3.5 Prior to this version, only the ``file_name`` argument was considered for filename matches in the hash file. This would be problematic for cases in which the user was relying on a remote checksum file that they do not control, and they wished to use a differe...
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python
train
jwodder/doapi
doapi/droplet.py
https://github.com/jwodder/doapi/blob/b1306de86a01d8ae7b9c1fe2699765bb82e4f310/doapi/droplet.py#L424-L438
def change_kernel(self, kernel): """ Change the droplet's kernel :param kernel: a kernel ID or `Kernel` object representing the new kernel :type kernel: integer or `Kernel` :return: an `Action` representing the in-progress operation on the droplet ...
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Change the droplet's kernel :param kernel: a kernel ID or `Kernel` object representing the new kernel :type kernel: integer or `Kernel` :return: an `Action` representing the in-progress operation on the droplet :rtype: Action :raises DOAPIError: if the AP...
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python
train
odlgroup/odl
odl/contrib/solvers/spdhg/stochastic_primal_dual_hybrid_gradient.py
https://github.com/odlgroup/odl/blob/b8443f6aca90e191ba36c91d32253c5a36249a6c/odl/contrib/solvers/spdhg/stochastic_primal_dual_hybrid_gradient.py#L241-L407
def spdhg_generic(x, f, g, A, tau, sigma, niter, **kwargs): r"""Computes a saddle point with a stochastic PDHG. This means, a solution (x*, y*), y* = (y*_1, ..., y*_n) such that (x*, y*) in arg min_x max_y sum_i=1^n <y_i, A_i> - f*[i](y_i) + g(x) where g : X -> IR_infty and f[i] : Y[i] -> IR_infty ar...
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r"""Computes a saddle point with a stochastic PDHG. This means, a solution (x*, y*), y* = (y*_1, ..., y*_n) such that (x*, y*) in arg min_x max_y sum_i=1^n <y_i, A_i> - f*[i](y_i) + g(x) where g : X -> IR_infty and f[i] : Y[i] -> IR_infty are convex, l.s.c. and proper functionals. For this algorithm,...
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python
train
BlueBrain/NeuroM
examples/end_to_end_distance.py
https://github.com/BlueBrain/NeuroM/blob/254bb73535b20053d175bc4725bade662177d12b/examples/end_to_end_distance.py#L60-L71
def calculate_and_plot_end_to_end_distance(neurite): '''Calculate and plot the end-to-end distance vs the number of segments for an increasingly larger part of a given neurite. Note that the plots are not very meaningful for bifurcating trees.''' def _dist(seg): '''Distance between segmenr end ...
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Calculate and plot the end-to-end distance vs the number of segments for an increasingly larger part of a given neurite. Note that the plots are not very meaningful for bifurcating trees.
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python
train
wbond/oscrypto
oscrypto/_openssl/symmetric.py
https://github.com/wbond/oscrypto/blob/af778bf1c88bf6c4a7342f5353b130686a5bbe1c/oscrypto/_openssl/symmetric.py#L772-L823
def _setup_evp_encrypt_decrypt(cipher, data): """ Creates an EVP_CIPHER pointer object and determines the buffer size necessary for the parameter specified. :param evp_cipher_ctx: An EVP_CIPHER_CTX pointer :param cipher: A unicode string of "aes128", "aes192", "aes256", "des", ...
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Creates an EVP_CIPHER pointer object and determines the buffer size necessary for the parameter specified. :param evp_cipher_ctx: An EVP_CIPHER_CTX pointer :param cipher: A unicode string of "aes128", "aes192", "aes256", "des", "tripledes_2key", "tripledes_3key", "rc2", "rc4" ...
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python
valid
mrsarm/mongotail
mongotail/out.py
https://github.com/mrsarm/mongotail/blob/82ba74e32eff92faa320833a8d19c58555f9cd49/mongotail/out.py#L35-L196
def print_obj(obj, verbose, metadata, mongo_version): """ Print the dict returned by a MongoDB Query in the standard output. """ if verbose: sys.stdout.write(json_encoder.encode(obj) + '\n') sys.stdout.flush() else: try: ts_time = obj['ts'] operation =...
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Print the dict returned by a MongoDB Query in the standard output.
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python
test
ActivisionGameScience/assertpy
assertpy/assertpy.py
https://github.com/ActivisionGameScience/assertpy/blob/08d799cdb01f9a25d3e20672efac991c7bc26d79/assertpy/assertpy.py#L677-L685
def is_alpha(self): """Asserts that val is non-empty string and all characters are alphabetic.""" if not isinstance(self.val, str_types): raise TypeError('val is not a string') if len(self.val) == 0: raise ValueError('val is empty') if not self.val.isalpha(): ...
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Asserts that val is non-empty string and all characters are alphabetic.
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python
valid
sorgerlab/indra
indra/preassembler/hierarchy_manager.py
https://github.com/sorgerlab/indra/blob/79a70415832c5702d7a820c7c9ccc8e25010124b/indra/preassembler/hierarchy_manager.py#L128-L140
def build_transitive_closures(self): """Build the transitive closures of the hierarchy. This method constructs dictionaries which contain terms in the hierarchy as keys and either all the "isa+" or "partof+" related terms as values. """ self.component_counter = 0 ...
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Build the transitive closures of the hierarchy. This method constructs dictionaries which contain terms in the hierarchy as keys and either all the "isa+" or "partof+" related terms as values.
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python
train
chrislit/abydos
setup.py
https://github.com/chrislit/abydos/blob/165466b3ff6afd8024a4c8660421b0c4e7773db9/setup.py#L41-L56
def readfile(fn): """Read fn and return the contents. Parameters ---------- fn : str A filename Returns ------- str The content of the file """ with open(path.join(HERE, fn), 'r', encoding='utf-8') as f: return f.read()
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Read fn and return the contents. Parameters ---------- fn : str A filename Returns ------- str The content of the file
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python
valid
Telefonica/toolium
toolium/driver_wrappers_pool.py
https://github.com/Telefonica/toolium/blob/56847c243b3a98876df74c184b75e43f8810e475/toolium/driver_wrappers_pool.py#L155-L170
def stop_drivers(cls, maintain_default=False): """Stop all drivers except default if it should be reused :param maintain_default: True if the default driver should not be closed """ # Exclude first wrapper if the driver must be reused driver_wrappers = cls.driver_wrappers[1:] if...
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Stop all drivers except default if it should be reused :param maintain_default: True if the default driver should not be closed
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python
train
serkanyersen/underscore.py
src/underscore.py
https://github.com/serkanyersen/underscore.py/blob/07c25c3f0f789536e4ad47aa315faccc0da9602f/src/underscore.py#L961-L971
def invert(self): """ Invert the keys and values of an object. The values must be serializable. """ keys = self._clean.keys() inverted = {} for key in keys: inverted[self.obj[key]] = key return self._wrap(inverted)
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Invert the keys and values of an object. The values must be serializable.
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python
train
HiPERCAM/hcam_widgets
hcam_widgets/widgets.py
https://github.com/HiPERCAM/hcam_widgets/blob/7219f0d96dd3a8ebe3139c7f542a72c02d02fce8/hcam_widgets/widgets.py#L302-L327
def _pollMouse(self): """ Polls @10Hz, with a slight delay at the start. """ if self._mouseJustPressed: delay = 300 self._mouseJustPressed = False else: delay = 100 if self._leftMousePressed: self.add(1) ...
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Polls @10Hz, with a slight delay at the start.
[ "Polls" ]
python
train
bjodah/pyodesys
pyodesys/core.py
https://github.com/bjodah/pyodesys/blob/0034a6165b550d8d9808baef58678dca5a493ab7/pyodesys/core.py#L665-L691
def _integrate_gsl(self, *args, **kwargs): """ Do not use directly (use ``integrate(..., integrator='gsl')``). Uses `GNU Scientific Library <http://www.gnu.org/software/gsl/>`_ (via `pygslodeiv2 <https://pypi.python.org/pypi/pygslodeiv2>`_) to integrate the ODE system. Paramete...
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Do not use directly (use ``integrate(..., integrator='gsl')``). Uses `GNU Scientific Library <http://www.gnu.org/software/gsl/>`_ (via `pygslodeiv2 <https://pypi.python.org/pypi/pygslodeiv2>`_) to integrate the ODE system. Parameters ---------- \*args : see ...
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python
train
apple/turicreate
src/external/coremltools_wrap/coremltools/deps/protobuf/python/google/protobuf/text_format.py
https://github.com/apple/turicreate/blob/74514c3f99e25b46f22c6e02977fe3da69221c2e/src/external/coremltools_wrap/coremltools/deps/protobuf/python/google/protobuf/text_format.py#L909-L928
def _SkipFieldValue(tokenizer): """Skips over a field value. Args: tokenizer: A tokenizer to parse the field name and values. Raises: ParseError: In case an invalid field value is found. """ # String/bytes tokens can come in multiple adjacent string literals. # If we can consume one, consume as ma...
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Skips over a field value. Args: tokenizer: A tokenizer to parse the field name and values. Raises: ParseError: In case an invalid field value is found.
[ "Skips", "over", "a", "field", "value", "." ]
python
train
timothycrosley/deprecated.frosted
frosted/checker.py
https://github.com/timothycrosley/deprecated.frosted/blob/61ba7f341fc55676c3580c8c4e52117986cd5e12/frosted/checker.py#L276-L289
def check_plugins(self): """ collect plugins from entry point 'frosted.plugins' and run their check() method, passing the filename """ checkers = {} for ep in pkg_resources.iter_entry_points(group='frosted.plugins'): checkers.update({ep.name: ep.load()}) for...
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collect plugins from entry point 'frosted.plugins' and run their check() method, passing the filename
[ "collect", "plugins", "from", "entry", "point", "frosted", ".", "plugins" ]
python
train
ssato/python-anyconfig
src/anyconfig/template.py
https://github.com/ssato/python-anyconfig/blob/f2f4fb8d8e232aadea866c202e1dd7a5967e2877/src/anyconfig/template.py#L50-L62
def copen(filepath, flag='r', encoding=None): """ FIXME: How to test this ? >>> c = copen(__file__) >>> c is not None True """ if encoding is None: encoding = locale.getdefaultlocale()[1] return codecs.open(filepath, flag, encoding)
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FIXME: How to test this ? >>> c = copen(__file__) >>> c is not None True
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python
train
walter426/Python_GoogleMapsApi
GoogleMapsApi/GoogleMapsServiceParser.py
https://github.com/walter426/Python_GoogleMapsApi/blob/4832b293a0027446941a5f00ecc66256f92ddbce/GoogleMapsApi/GoogleMapsServiceParser.py#L112-L125
def parse_json(self, page): '''Returns json feed.''' if not isinstance(page, basestring): page = util.decode_page(page) self.doc = json.loads(page) results = self.doc.get(self.result_name, []) if not results: self.check_status(self.doc.ge...
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Returns json feed.
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python
train
saltstack/salt
salt/modules/netscaler.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/netscaler.py#L196-L211
def servicegroup_exists(sg_name, sg_type=None, **connection_args): ''' Checks if a service group exists CLI Example: .. code-block:: bash salt '*' netscaler.servicegroup_exists 'serviceGroupName' ''' sg = _servicegroup_get(sg_name, **connection_args) if sg is None: return ...
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Checks if a service group exists CLI Example: .. code-block:: bash salt '*' netscaler.servicegroup_exists 'serviceGroupName'
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python
train
OSLL/jabba
jabba/analysis/parameters_present.py
https://github.com/OSLL/jabba/blob/71c1d008ab497020fba6ffa12a600721eb3f5ef7/jabba/analysis/parameters_present.py#L17-L42
def parameters_present(options, **kwargs): """ Analysis function Check whether all calls contain a given parameters or their synonyms """ synonyms = options['synonyms'] call_graph = options['call_graph'] result = _Result() for node, edges in call_graph: for edge in edges: ...
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Analysis function Check whether all calls contain a given parameters or their synonyms
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python
train
saltstack/salt
salt/modules/mac_shadow.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/mac_shadow.py#L78-L97
def _set_account_policy(name, policy): ''' Set a value in the user accountPolicy. For use by this module only :param str name: The user name :param str policy: The policy to apply :return: True if success, otherwise False :rtype: bool :raises: CommandExecutionError on user not found or an...
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Set a value in the user accountPolicy. For use by this module only :param str name: The user name :param str policy: The policy to apply :return: True if success, otherwise False :rtype: bool :raises: CommandExecutionError on user not found or any other unknown error
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python
train
alorence/django-modern-rpc
modernrpc/system_methods.py
https://github.com/alorence/django-modern-rpc/blob/6dc42857d35764b24e2c09334f4b578629a75f9e/modernrpc/system_methods.py#L55-L92
def __system_multiCall(calls, **kwargs): """ Call multiple RPC methods at once. :param calls: An array of struct like {"methodName": string, "params": array } :param kwargs: Internal data :type calls: list :type kwargs: dict :return: """ if not isinstance(calls, list): raise...
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python
train
justquick/python-varnish
varnish.py
https://github.com/justquick/python-varnish/blob/8f114c74898e6c5ade2ce49c8b595040bd150465/varnish.py#L198-L207
def param_show(self, param, l=False): """ param.show [-l] [param] Display a list if run-time parameters and their values. If the -l option is specified, the list includes a brief explanation of each parameter. If a param is specified, display only the value and ...
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param.show [-l] [param] Display a list if run-time parameters and their values. If the -l option is specified, the list includes a brief explanation of each parameter. If a param is specified, display only the value and explanation for this parameter.
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python
train
MycroftAI/mycroft-precise
precise/model.py
https://github.com/MycroftAI/mycroft-precise/blob/e17cebdd171906dbd8a16e282d8a7966fba2eeba/precise/model.py#L42-L48
def load_precise_model(model_name: str) -> Any: """Loads a Keras model from file, handling custom loss function""" if not model_name.endswith('.net'): print('Warning: Unknown model type, ', model_name) inject_params(model_name) return load_keras().models.load_model(model_name)
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Loads a Keras model from file, handling custom loss function
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python
train
merll/docker-map
dockermap/client/base.py
https://github.com/merll/docker-map/blob/e14fe86a6ff5c33d121eb2f9157e9359cb80dd02/dockermap/client/base.py#L199-L212
def push_container_logs(self, container): """ Reads the current container logs and passes them to :meth:`~push_log`. Removes a trailing empty line and prefixes each log line with the container name. :param container: Container name or id. :type container: unicode | str "...
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Reads the current container logs and passes them to :meth:`~push_log`. Removes a trailing empty line and prefixes each log line with the container name. :param container: Container name or id. :type container: unicode | str
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python
train
pantsbuild/pants
src/python/pants/subsystem/subsystem_client_mixin.py
https://github.com/pantsbuild/pants/blob/b72e650da0df685824ffdcc71988b8c282d0962d/src/python/pants/subsystem/subsystem_client_mixin.py#L85-L110
def subsystem_closure_iter(cls): """Iterate over the transitive closure of subsystem dependencies of this Optionable. :rtype: :class:`collections.Iterator` of :class:`SubsystemDependency` :raises: :class:`pants.subsystem.subsystem_client_mixin.SubsystemClientMixin.CycleException` if a dependen...
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Iterate over the transitive closure of subsystem dependencies of this Optionable. :rtype: :class:`collections.Iterator` of :class:`SubsystemDependency` :raises: :class:`pants.subsystem.subsystem_client_mixin.SubsystemClientMixin.CycleException` if a dependency cycle is detected.
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python
train
basho/riak-python-client
riak/table.py
https://github.com/basho/riak-python-client/blob/91de13a16607cdf553d1a194e762734e3bec4231/riak/table.py#L51-L64
def new(self, rows, columns=None): """ A shortcut for manually instantiating a new :class:`~riak.ts_object.TsObject` :param rows: An list of lists with timeseries data :type rows: list :param columns: An list of Column names and types. Optional. :type columns: li...
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python
train
KelSolaar/Foundations
foundations/cache.py
https://github.com/KelSolaar/Foundations/blob/5c141330faf09dad70a12bc321f4c564917d0a91/foundations/cache.py#L51-L72
def add_content(self, **content): """ Adds given content to the cache. Usage:: >>> cache = Cache() >>> cache.add_content(John="Doe", Luke="Skywalker") True >>> cache {'Luke': 'Skywalker', 'John': 'Doe'} :param \*\*content: Co...
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Adds given content to the cache. Usage:: >>> cache = Cache() >>> cache.add_content(John="Doe", Luke="Skywalker") True >>> cache {'Luke': 'Skywalker', 'John': 'Doe'} :param \*\*content: Content to add. :type \*\*content: \*\* ...
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python
train
numenta/nupic
src/nupic/algorithms/spatial_pooler.py
https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/algorithms/spatial_pooler.py#L1083-L1099
def _avgConnectedSpanForColumn1D(self, columnIndex): """ The range of connected synapses for column. This is used to calculate the inhibition radius. This variation of the function only supports a 1 dimensional column topology. Parameters: ---------------------------- :param columnIndex: ...
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The range of connected synapses for column. This is used to calculate the inhibition radius. This variation of the function only supports a 1 dimensional column topology. Parameters: ---------------------------- :param columnIndex: The index identifying a column in the permanence, ...
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python
valid
gamechanger/confluent_schema_registry_client
confluent_schema_registry_client/__init__.py
https://github.com/gamechanger/confluent_schema_registry_client/blob/ac9196e366724eeb2f19f1a169fd2f9a0c8d68ae/confluent_schema_registry_client/__init__.py#L170-L176
def get_subject_compatibility_level(self, subject): """ Gets the compatibility level for the given subject. """ res = requests.get(self._url('/config/{}', subject), headers=HEADERS) raise_if_failed(res) return res.json()['compatibility']
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Gets the compatibility level for the given subject.
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python
train
peerplays-network/python-peerplays
peerplays/cli/decorators.py
https://github.com/peerplays-network/python-peerplays/blob/188f04238e7e21d5f73e9b01099eea44289ef6b7/peerplays/cli/decorators.py#L154-L164
def configfile(f): """ This decorator will parse a configuration file in YAML format and store the dictionary in ``ctx.blockchain.config`` """ @click.pass_context def new_func(ctx, *args, **kwargs): ctx.config = yaml.load(open(ctx.obj["configfile"])) return ctx.invoke(f, *args, ...
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This decorator will parse a configuration file in YAML format and store the dictionary in ``ctx.blockchain.config``
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python
train
HazyResearch/fonduer
src/fonduer/utils/utils_udf.py
https://github.com/HazyResearch/fonduer/blob/4520f86a716f03dcca458a9f4bddac75b4e7068f/src/fonduer/utils/utils_udf.py#L342-L369
def upsert_keys(session, key_table, keys): """Bulk add annotation keys to the specified table. :param key_table: The sqlalchemy class to insert into. :param keys: A map of {name: [candidate_classes]}. """ # Do nothing if empty if not keys: return for key_batch in _batch_postgres_qu...
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Bulk add annotation keys to the specified table. :param key_table: The sqlalchemy class to insert into. :param keys: A map of {name: [candidate_classes]}.
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python
train
lwgray/pyEntrezId
PyEntrezId/Conversion.py
https://github.com/lwgray/pyEntrezId/blob/28286cf21b876dd4894bf21a222dfd1022441b75/PyEntrezId/Conversion.py#L82-L105
def convert_uniprot_to_entrez(self, uniprot): """Convert Uniprot Id to Entrez Id""" # Submit request to NCBI eutils/Gene Database server = "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?" + self.options + "&db=gene&term={0}".format( uniprot) r = requests.get(serve...
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Convert Uniprot Id to Entrez Id
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python
train
mabuchilab/QNET
src/qnet/algebra/core/abstract_quantum_algebra.py
https://github.com/mabuchilab/QNET/blob/cc20d26dad78691d34c67173e5cd67dcac94208a/src/qnet/algebra/core/abstract_quantum_algebra.py#L515-L530
def factor_for_space(self, spc): """Return a tuple of two products, where the first product contains the given Hilbert space, and the second product is disjunct from it.""" if spc == TrivialSpace: ops_on_spc = [ o for o in self.operands if o.space is TrivialSpace] ...
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Return a tuple of two products, where the first product contains the given Hilbert space, and the second product is disjunct from it.
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python
train
stsouko/CIMtools
CIMtools/model_selection/group_out.py
https://github.com/stsouko/CIMtools/blob/cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3/CIMtools/model_selection/group_out.py#L54-L92
def split(self, X, y=None, groups=None): """Generate indices to split data into training and test set. Parameters ---------- X : array-like, of length n_samples Training data, includes reaction's containers y : array-like, of length n_samples The target va...
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Generate indices to split data into training and test set. Parameters ---------- X : array-like, of length n_samples Training data, includes reaction's containers y : array-like, of length n_samples The target variable for supervised learning problems. gro...
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python
valid
archman/beamline
beamline/mathutils.py
https://github.com/archman/beamline/blob/417bc5dc13e754bc89d246427984590fced64d07/beamline/mathutils.py#L179-L207
def transQuad(length=0.0, k1=0.0, gamma=None): """ Transport matrix of quadrupole :param length: quad width in [m] :param k1: quad k1 strength in [T/m] :param gamma: electron energy, gamma value :return: 6x6 numpy array """ m = np.eye(6, 6, dtype=np.float64) if length == 0.0: pr...
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Transport matrix of quadrupole :param length: quad width in [m] :param k1: quad k1 strength in [T/m] :param gamma: electron energy, gamma value :return: 6x6 numpy array
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python
train
shoebot/shoebot
lib/beziereditor/__init__.py
https://github.com/shoebot/shoebot/blob/d554c1765c1899fa25727c9fc6805d221585562b/lib/beziereditor/__init__.py#L197-L204
def angle(self, x0, y0, x1, y1): """ Calculates the angle between two points. """ a = degrees( atan((y1-y0) / (x1-x0+0.00001)) ) + 360 if x1-x0 < 0: a += 180 return a
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Calculates the angle between two points.
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python
valid
numba/llvmlite
llvmlite/ir/types.py
https://github.com/numba/llvmlite/blob/fcadf8af11947f3fd041c5d6526c5bf231564883/llvmlite/ir/types.py#L50-L55
def get_abi_size(self, target_data, context=None): """ Get the ABI size of this type according to data layout *target_data*. """ llty = self._get_ll_pointer_type(target_data, context) return target_data.get_pointee_abi_size(llty)
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Get the ABI size of this type according to data layout *target_data*.
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python
train
inveniosoftware/invenio-deposit
invenio_deposit/views/ui.py
https://github.com/inveniosoftware/invenio-deposit/blob/f243ea1d01ab0a3bc92ade3262d1abdd2bc32447/invenio_deposit/views/ui.py#L39-L90
def create_blueprint(endpoints): """Create Invenio-Deposit-UI blueprint. See: :data:`invenio_deposit.config.DEPOSIT_RECORDS_UI_ENDPOINTS`. :param endpoints: List of endpoints configuration. :returns: The configured blueprint. """ from invenio_records_ui.views import create_url_rule bluepr...
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Create Invenio-Deposit-UI blueprint. See: :data:`invenio_deposit.config.DEPOSIT_RECORDS_UI_ENDPOINTS`. :param endpoints: List of endpoints configuration. :returns: The configured blueprint.
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python
valid
mkouhei/tonicdnscli
src/tonicdnscli/processing.py
https://github.com/mkouhei/tonicdnscli/blob/df2d6fb2104ae4d49fa89d1bba2f3ccd2fed388c/src/tonicdnscli/processing.py#L72-L87
def delete_records(server, token, data): """Delete records of specific domain. Arguments: server: TonicDNS API server token: TonicDNS API authentication token data: Delete records ContentType: application/json x-authentication-token: token """ method = 'DELETE' ...
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Delete records of specific domain. Arguments: server: TonicDNS API server token: TonicDNS API authentication token data: Delete records ContentType: application/json x-authentication-token: token
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python
train
pydata/xarray
xarray/conventions.py
https://github.com/pydata/xarray/blob/6d93a95d05bdbfc33fff24064f67d29dd891ab58/xarray/conventions.py#L357-L416
def decode_cf_variables(variables, attributes, concat_characters=True, mask_and_scale=True, decode_times=True, decode_coords=True, drop_variables=None, use_cftime=None): """ Decode several CF encoded variables. See: decode_cf_variable ...
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Decode several CF encoded variables. See: decode_cf_variable
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python
train
siznax/wptools
wptools/page.py
https://github.com/siznax/wptools/blob/100eaea585c34aa9ad87a9eda8982bb4898f6ec9/wptools/page.py#L218-L238
def _set_imageinfo_data(self): """ set image attributes from MediaWiki API:Imageinfo response """ data = self._load_response('imageinfo') pages = data['query'].get('pages') normalized = [] if 'normalized' in data['query']: normalized = data['query']['...
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set image attributes from MediaWiki API:Imageinfo response
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python
train
agoragames/haigha
haigha/connections/rabbit_connection.py
https://github.com/agoragames/haigha/blob/7b004e1c0316ec14b94fec1c54554654c38b1a25/haigha/connections/rabbit_connection.py#L290-L316
def _recv_cancel(self, method_frame): '''Handle Basic.Cancel from broker :param MethodFrame method_frame: Basic.Cancel method frame from broker ''' self.logger.warning("consumer cancelled by broker: %r", method_frame) consumer_tag = method_frame.args.read_shortstr() # ...
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Handle Basic.Cancel from broker :param MethodFrame method_frame: Basic.Cancel method frame from broker
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python
train
brocade/pynos
pynos/versions/ver_6/ver_6_0_1/yang/brocade_ras_ext.py
https://github.com/brocade/pynos/blob/bd8a34e98f322de3fc06750827d8bbc3a0c00380/pynos/versions/ver_6/ver_6_0_1/yang/brocade_ras_ext.py#L214-L225
def show_support_save_status_input_rbridge_id(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") show_support_save_status = ET.Element("show_support_save_status") config = show_support_save_status input = ET.SubElement(show_support_save_status, "inp...
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Auto Generated Code
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python
train
SeabornGames/Timestamp
seaborn_timestamp/timestamp.py
https://github.com/SeabornGames/Timestamp/blob/2b6902ddc2a009d6f3cb4dd0f6882bf4345f3871/seaborn_timestamp/timestamp.py#L68-L80
def now(years=0, days=0, hours=0, minutes=0, seconds=0): """ :param years: int delta of years from now :param days: int delta of days from now :param hours: int delta of hours from now :param minutes: int delta of minutes from now :param seconds: float delta of seconds from now :retur...
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:param years: int delta of years from now :param days: int delta of days from now :param hours: int delta of hours from now :param minutes: int delta of minutes from now :param seconds: float delta of seconds from now :return: str of the now timestamp
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python
train
geophysics-ubonn/crtomo_tools
lib/crtomo/tdManager.py
https://github.com/geophysics-ubonn/crtomo_tools/blob/27c3e21a557f8df1c12455b96c4c2e00e08a5b4a/lib/crtomo/tdManager.py#L1716-L1748
def add_homogeneous_model(self, magnitude, phase=0): """Add a homogeneous resistivity model to the tomodir. This is useful for synthetic measurements. Parameters ---------- magnitude : float magnitude [Ohm m] value of the homogeneous model phase : float, opti...
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Add a homogeneous resistivity model to the tomodir. This is useful for synthetic measurements. Parameters ---------- magnitude : float magnitude [Ohm m] value of the homogeneous model phase : float, optional phase [mrad] value of the homogeneous model ...
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python
train
zsethna/OLGA
olga/generation_probability.py
https://github.com/zsethna/OLGA/blob/e825c333f0f9a4eb02132e0bcf86f0dca9123114/olga/generation_probability.py#L156-L213
def compute_regex_CDR3_template_pgen(self, regex_seq, V_usage_mask_in = None, J_usage_mask_in = None, print_warnings = True, raise_overload_warning = True): """Compute Pgen for all seqs consistent with regular expression regex_seq. Computes Pgen for a (limited vocabulary) regular expression of CDR3...
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Compute Pgen for all seqs consistent with regular expression regex_seq. Computes Pgen for a (limited vocabulary) regular expression of CDR3 amino acid sequences, conditioned on the V genes/alleles indicated in V_usage_mask_in and the J genes/alleles in J_usage_mask_in. Please note ...
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python
train
zikzakmedia/python-mediawiki
mediawiki/wikimarkup/__init__.py
https://github.com/zikzakmedia/python-mediawiki/blob/7c26732efa520e16c35350815ce98cd7610a0bcb/mediawiki/wikimarkup/__init__.py#L558-L658
def removeHtmlTags(self, text): """convert bad tags into HTML identities""" sb = [] text = self.removeHtmlComments(text) bits = text.split(u'<') sb.append(bits.pop(0)) tagstack = [] tablestack = tagstack for x in bits: m = _tagPattern.match(x) if not m: continue slash, t, params, brace, res...
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convert bad tags into HTML identities
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python
train
opencobra/memote
memote/suite/results/models.py
https://github.com/opencobra/memote/blob/276630fcd4449fb7b914186edfd38c239e7052df/memote/suite/results/models.py#L84-L90
def process_result_value(self, value, dialect): """Convert a JSON encoded string to a dictionary structure.""" if value is not None: with BytesIO(value) as stream: with GzipFile(fileobj=stream, mode="rb") as file_handle: value = json.loads(file_handle.read...
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Convert a JSON encoded string to a dictionary structure.
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python
train
wheeler-microfluidics/dmf-control-board-firmware
dmf_control_board_firmware/__init__.py
https://github.com/wheeler-microfluidics/dmf-control-board-firmware/blob/1cd8cc9a148d530f9a11f634f2dbfe73f08aa27c/dmf_control_board_firmware/__init__.py#L1027-L1061
def _upgrade(self): """ Upgrade the serialized object if necessary. Raises: FutureVersionError: file was written by a future version of the software. """ logging.debug("[FeedbackCalibration]._upgrade()") version = Version.fromstring(self.versi...
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Upgrade the serialized object if necessary. Raises: FutureVersionError: file was written by a future version of the software.
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python
train
django-ldapdb/django-ldapdb
ldapdb/backends/ldap/base.py
https://github.com/django-ldapdb/django-ldapdb/blob/f3a35d3c8e42e7799d71e5d156ab97fb69e6b479/ldapdb/backends/ldap/base.py#L220-L236
def get_connection_params(self): """Compute appropriate parameters for establishing a new connection. Computed at system startup. """ return { 'uri': self.settings_dict['NAME'], 'tls': self.settings_dict.get('TLS', False), 'bind_dn': self.settings_dic...
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Compute appropriate parameters for establishing a new connection. Computed at system startup.
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python
train
wangwenpei/cliez
cliez/mixins.py
https://github.com/wangwenpei/cliez/blob/d6fe775544cd380735c56c8a4a79bc2ad22cb6c4/cliez/mixins.py#L55-L86
def parse_require(self, env, keys, defaults={}): """ check and get require config :param dict env: user config node :param list keys: check keys .. note:: option and key name must be same. :param dict defaults: default value for keys :return:...
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check and get require config :param dict env: user config node :param list keys: check keys .. note:: option and key name must be same. :param dict defaults: default value for keys :return: dict.env with verified. .. exception:: will r...
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python
valid
calmjs/calmjs
src/calmjs/loaderplugin.py
https://github.com/calmjs/calmjs/blob/b9b407c2b6a7662da64bccba93bb8d92e7a5fafd/src/calmjs/loaderplugin.py#L236-L252
def store_records_for_package(self, entry_point, records): """ Given that records are based on the parent, and the same entry point(s) will reference those same records multiple times, the actual stored records must be limited. """ pkg_records_entry = self._dist_to_packa...
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Given that records are based on the parent, and the same entry point(s) will reference those same records multiple times, the actual stored records must be limited.
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python
train