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django-parler/django-parler
parler/admin.py
https://github.com/django-parler/django-parler/blob/11ae4af5e8faddb74c69c848870122df4006a54e/parler/admin.py#L125-L132
def get_form_language(self, request, obj=None): """ Return the current language for the currently displayed object fields. """ if obj is not None: return obj.get_current_language() else: return self._language(request)
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Return the current language for the currently displayed object fields.
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python
train
tritemio/PyBroMo
pybromo/diffusion.py
https://github.com/tritemio/PyBroMo/blob/b75f82a4551ff37e7c7a7e6954c536451f3e6d06/pybromo/diffusion.py#L382-L397
def numeric_params(self): """A dict containing all the simulation numeric-parameters. The values are 2-element tuples: first element is the value and second element is a string describing the parameter (metadata). """ nparams = dict( D = (self.diffusion_coeff.mean(),...
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A dict containing all the simulation numeric-parameters. The values are 2-element tuples: first element is the value and second element is a string describing the parameter (metadata).
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python
valid
oanda/v20-python
src/v20/order.py
https://github.com/oanda/v20-python/blob/f28192f4a31bce038cf6dfa302f5878bec192fe5/src/v20/order.py#L4694-L4709
def stop_loss(self, accountID, **kwargs): """ Shortcut to create a Stop Loss Order in an Account Args: accountID : The ID of the Account kwargs : The arguments to create a StopLossOrderRequest Returns: v20.response.Response containing the results fro...
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Shortcut to create a Stop Loss Order in an Account Args: accountID : The ID of the Account kwargs : The arguments to create a StopLossOrderRequest Returns: v20.response.Response containing the results from submitting the request
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python
train
phaethon/kamene
kamene/utils6.py
https://github.com/phaethon/kamene/blob/11d4064844f4f68ac5d7546f5633ac7d02082914/kamene/utils6.py#L476-L494
def in6_ctop(addr): """ Convert an IPv6 address in Compact Representation Notation (RFC 1924) to printable representation ;-) Returns None on error. """ #if len(addr) != 20 or not reduce(lambda x,y: x and y, map(lambda x: x in _rfc1924map, addr)): if len(addr) != 20 or not all(map(lambda x:...
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Convert an IPv6 address in Compact Representation Notation (RFC 1924) to printable representation ;-) Returns None on error.
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python
train
mcs07/ChemDataExtractor
chemdataextractor/nlp/abbrev.py
https://github.com/mcs07/ChemDataExtractor/blob/349a3bea965f2073141d62043b89319222e46af1/chemdataextractor/nlp/abbrev.py#L175-L180
def detect(self, tokens): """Return a (abbr, long) pair for each abbreviation definition.""" results = [] for abbr_span, long_span in self.detect_spans(tokens): results.append((tokens[abbr_span[0]:abbr_span[1]], tokens[long_span[0]:long_span[1]])) return results
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Return a (abbr, long) pair for each abbreviation definition.
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python
train
botstory/botstory
botstory/integrations/fb/validate.py
https://github.com/botstory/botstory/blob/9c5b2fc7f7a14dbd467d70f60d5ba855ef89dac3/botstory/integrations/fb/validate.py#L22-L40
def persistent_menu(menu): """ more: https://developers.facebook.com/docs/messenger-platform/thread-settings/persistent-menu :param menu: :return: """ if len(menu) > 3: raise Invalid('menu should not exceed 3 call to actions') if any(len(item['call_to_actions']) > 5 for item in men...
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more: https://developers.facebook.com/docs/messenger-platform/thread-settings/persistent-menu :param menu: :return:
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python
train
GoogleCloudPlatform/appengine-mapreduce
python/src/mapreduce/api/map_job/sample_input_reader.py
https://github.com/GoogleCloudPlatform/appengine-mapreduce/blob/2045eb3605b6ecb40c83d11dd5442a89fe5c5dd6/python/src/mapreduce/api/map_job/sample_input_reader.py#L101-L121
def validate(cls, job_config): """Inherit docs.""" super(SampleInputReader, cls).validate(job_config) params = job_config.input_reader_params # Validate count. if cls.COUNT not in params: raise errors.BadReaderParamsError("Must specify %s" % cls.COUNT) if not isinstance(params[cls.COUNT],...
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Inherit docs.
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python
train
nutechsoftware/alarmdecoder
alarmdecoder/devices/usb_device.py
https://github.com/nutechsoftware/alarmdecoder/blob/b0c014089e24455228cb4402cf30ba98157578cd/alarmdecoder/devices/usb_device.py#L358-L419
def read_line(self, timeout=0.0, purge_buffer=False): """ Reads a line from the device. :param timeout: read timeout :type timeout: float :param purge_buffer: Indicates whether to purge the buffer prior to reading. :type purge_buffer: bool ...
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Reads a line from the device. :param timeout: read timeout :type timeout: float :param purge_buffer: Indicates whether to purge the buffer prior to reading. :type purge_buffer: bool :returns: line that was read :raises: :py:class:`~alarmdeco...
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python
train
apache/airflow
airflow/contrib/hooks/gcp_pubsub_hook.py
https://github.com/apache/airflow/blob/b69c686ad8a0c89b9136bb4b31767257eb7b2597/airflow/contrib/hooks/gcp_pubsub_hook.py#L227-L261
def pull(self, project, subscription, max_messages, return_immediately=False): """Pulls up to ``max_messages`` messages from Pub/Sub subscription. :param project: the GCP project ID where the subscription exists :type project: str :param subscription: the Pub/Sub subscripti...
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Pulls up to ``max_messages`` messages from Pub/Sub subscription. :param project: the GCP project ID where the subscription exists :type project: str :param subscription: the Pub/Sub subscription name to pull from; do not include the 'projects/{project}/topics/' prefix. :type...
[ "Pulls", "up", "to", "max_messages", "messages", "from", "Pub", "/", "Sub", "subscription", "." ]
python
test
marl/jams
jams/util.py
https://github.com/marl/jams/blob/b16778399b9528efbd71434842a079f7691a7a66/jams/util.py#L182-L223
def find_with_extension(in_dir, ext, depth=3, sort=True): """Naive depth-search into a directory for files with a given extension. Parameters ---------- in_dir : str Path to search. ext : str File extension to match. depth : int Depth of directories to search. sort :...
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Naive depth-search into a directory for files with a given extension. Parameters ---------- in_dir : str Path to search. ext : str File extension to match. depth : int Depth of directories to search. sort : bool Sort the list alphabetically Returns -----...
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python
valid
ael-code/pyFsdb
fsdb/fsdb.py
https://github.com/ael-code/pyFsdb/blob/de33a0d41373307cb32cdd7ba1991b85ff495ee3/fsdb/fsdb.py#L110-L124
def _copy_content(self, origin, dstPath): """copy the content of origin into dstPath Due to concurrency problem, the content will be first copied to a temporary file alongside `dstPath` and then atomically moved to `dstPath` """ if hasattr(origin, 'read'): ...
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copy the content of origin into dstPath Due to concurrency problem, the content will be first copied to a temporary file alongside `dstPath` and then atomically moved to `dstPath`
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python
train
ltalirz/aiida-phtools
aiida_phtools/calculations/distance_matrix.py
https://github.com/ltalirz/aiida-phtools/blob/acec3339425fe92d3f55e725a199123de9a1febc/aiida_phtools/calculations/distance_matrix.py#L127-L138
def cmdline_params(self, surface_sample_file_name, cell_file_name): """Synthesize command line parameters e.g. [ ['struct.vsa'], ['struct.cell']] """ parameters = [] parameters += [surface_sample_file_name] parameters += [cell_file_name] parameters += [self._OUT...
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Synthesize command line parameters e.g. [ ['struct.vsa'], ['struct.cell']]
[ "Synthesize", "command", "line", "parameters" ]
python
train
annoviko/pyclustering
pyclustering/cluster/bang.py
https://github.com/annoviko/pyclustering/blob/98aa0dd89fd36f701668fb1eb29c8fb5662bf7d0/pyclustering/cluster/bang.py#L895-L908
def __calculate_density(self, amount_points): """! @brief Calculates BANG-block density. @param[in] amount_points (uint): Amount of points in block. @return (double) BANG-block density. """ volume = self.__spatial_block.get_volume() if volume != 0.0: ...
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! @brief Calculates BANG-block density. @param[in] amount_points (uint): Amount of points in block. @return (double) BANG-block density.
[ "!" ]
python
valid
robertpeteuil/multi-cloud-control
mcc/cldcnct.py
https://github.com/robertpeteuil/multi-cloud-control/blob/f1565af1c0b6ed465ff312d3ccc592ba0609f4a2/mcc/cldcnct.py#L198-L211
def adj_nodes_az(az_nodes): """Adjust details specific to Azure.""" for node in az_nodes: node.cloud = "azure" node.cloud_disp = "Azure" node.private_ips = ip_to_str(node.private_ips) node.public_ips = ip_to_str(node.public_ips) node.zone = node.extra['location'] ...
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Adjust details specific to Azure.
[ "Adjust", "details", "specific", "to", "Azure", "." ]
python
train
michael-lazar/rtv
rtv/packages/praw/__init__.py
https://github.com/michael-lazar/rtv/blob/ccef2af042566ad384977028cf0bde01bc524dda/rtv/packages/praw/__init__.py#L2361-L2377
def get_multireddits(self, redditor, *args, **kwargs): """Return a list of multireddits belonging to a redditor. :param redditor: The username or Redditor object to find multireddits from. :returns: The json response from the server The additional parameters are passed dire...
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Return a list of multireddits belonging to a redditor. :param redditor: The username or Redditor object to find multireddits from. :returns: The json response from the server The additional parameters are passed directly into :meth:`~praw.__init__.BaseReddit.request_json` ...
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python
train
programa-stic/barf-project
barf/analysis/gadgets/verifier.py
https://github.com/programa-stic/barf-project/blob/18ed9e5eace55f7bf6015ec57f037c364099021c/barf/analysis/gadgets/verifier.py#L208-L234
def _get_constrs_arithmetic(self, gadget): """Generate constraints for the BinaryOperation gadgets: dst <- src1 OP src2 """ # *dst* register has to have the value of *src1 op src2* for all # possibles assignments of *src1* and *src2*. dst = self.analyzer.get_registe...
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Generate constraints for the BinaryOperation gadgets: dst <- src1 OP src2
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python
train
python-visualization/folium
folium/folium.py
https://github.com/python-visualization/folium/blob/8595240517135d1637ca4cf7cc624045f1d911b3/folium/folium.py#L408-L420
def choropleth(self, *args, **kwargs): """Call the Choropleth class with the same arguments. This method may be deleted after a year from now (Nov 2018). """ warnings.warn( 'The choropleth method has been deprecated. Instead use the new ' 'Choropleth class, whic...
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Call the Choropleth class with the same arguments. This method may be deleted after a year from now (Nov 2018).
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python
train
SHTOOLS/SHTOOLS
pyshtools/shclasses/shtensor.py
https://github.com/SHTOOLS/SHTOOLS/blob/9a115cf83002df2ddec6b7f41aeb6be688e285de/pyshtools/shclasses/shtensor.py#L1510-L1594
def plot_eigh(self, colorbar=True, cb_orientation='vertical', tick_interval=[60, 60], minor_tick_interval=[20, 20], xlabel='Longitude', ylabel='Latitude', axes_labelsize=9, tick_labelsize=8, show=True, fname=None, **kwargs): """ Plo...
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Plot the two eigenvalues and maximum absolute value eigenvalue of the horizontal tensor. Usage ----- x.plot_eigh([tick_interval, minor_tick_interval, xlabel, ylabel, colorbar, cb_orientation, cb_label, axes_labelsize, tick_labelsize, show, fname...
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python
train
vcs-python/vcspull
vcspull/config.py
https://github.com/vcs-python/vcspull/blob/c1827bf78d2cdebc61d82111c9aa35afd6ea6a25/vcspull/config.py#L268-L299
def filter_repos(config, repo_dir=None, vcs_url=None, name=None): """Return a :py:obj:`list` list of repos from (expanded) config file. repo_dir, vcs_url and name all support fnmatch. :param config: the expanded repo config in :py:class:`dict` format. :type config: dict :param repo_dir: directory ...
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Return a :py:obj:`list` list of repos from (expanded) config file. repo_dir, vcs_url and name all support fnmatch. :param config: the expanded repo config in :py:class:`dict` format. :type config: dict :param repo_dir: directory of checkout location, fnmatch pattern supported :type repo_dir: str o...
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python
train
tomplus/kubernetes_asyncio
kubernetes_asyncio/client/api/core_v1_api.py
https://github.com/tomplus/kubernetes_asyncio/blob/f9ab15317ec921409714c7afef11aeb0f579985d/kubernetes_asyncio/client/api/core_v1_api.py#L7211-L7234
def create_node(self, body, **kwargs): # noqa: E501 """create_node # noqa: E501 create a Node # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True >>> thread = api.create_node(body, async_req=Tr...
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create_node # noqa: E501 create a Node # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True >>> thread = api.create_node(body, async_req=True) >>> result = thread.get() :param async_req ...
[ "create_node", "#", "noqa", ":", "E501" ]
python
train
darothen/xbpch
xbpch/bpch.py
https://github.com/darothen/xbpch/blob/31972dd6fd5f3f7cecc3a46080ce4f43ca23fbe5/xbpch/bpch.py#L222-L241
def _read_header(self): """ Process the header information (data model / grid spec) """ self._header_pos = self.fp.tell() line = self.fp.readline('20sffii') modelname, res0, res1, halfpolar, center180 = line self._attributes.update({ "modelname": str(modelname, 'utf...
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Process the header information (data model / grid spec)
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python
train
apache/spark
python/pyspark/serializers.py
https://github.com/apache/spark/blob/618d6bff71073c8c93501ab7392c3cc579730f0b/python/pyspark/serializers.py#L588-L597
def _hack_namedtuple(cls): """ Make class generated by namedtuple picklable """ name = cls.__name__ fields = cls._fields def __reduce__(self): return (_restore, (name, fields, tuple(self))) cls.__reduce__ = __reduce__ cls._is_namedtuple_ = True return cls
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Make class generated by namedtuple picklable
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python
train
google/grr
grr/server/grr_response_server/hunt.py
https://github.com/google/grr/blob/5cef4e8e2f0d5df43ea4877e9c798e0bf60bfe74/grr/server/grr_response_server/hunt.py#L355-L367
def UpdateHunt(hunt_id, client_limit=None, client_rate=None, duration=None): """Updates a hunt (it must be paused to be updated).""" hunt_obj = data_store.REL_DB.ReadHuntObject(hunt_id) if hunt_obj.hunt_state != hunt_obj.HuntState.PAUSED: raise OnlyPausedHuntCanBeModifiedError(hunt_obj) data_store.REL_DB....
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Updates a hunt (it must be paused to be updated).
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python
train
codelv/enaml-native
src/enamlnative/ios/app.py
https://github.com/codelv/enaml-native/blob/c33986e9eda468c508806e0a3e73c771401e5718/src/enamlnative/ios/app.py#L43-L47
def _default_bridge(self): """ Get an instance of the ENBridge object using ctypes. """ objc = self.objc ENBridge = objc.objc_getClass('ENBridge') return objc.objc_msgSend(ENBridge, objc.sel_registerName('instance'))
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python
train
python-security/pyt
pyt/cfg/stmt_visitor.py
https://github.com/python-security/pyt/blob/efc0cfb716e40e0c8df4098f1cc8cf43723cd31f/pyt/cfg/stmt_visitor.py#L598-L714
def add_blackbox_or_builtin_call(self, node, blackbox): # noqa: C901 """Processes a blackbox or builtin function when it is called. Nothing gets assigned to ret_func_foo in the builtin/blackbox case. Increments self.function_call_index each time it is called, we can refer to it as N in the com...
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python
train
bwohlberg/sporco
sporco/prox/_util.py
https://github.com/bwohlberg/sporco/blob/8946a04331106f4e39904fbdf2dc7351900baa04/sporco/prox/_util.py#L20-L66
def ndto2d(x, axis=-1): """Convert a multi-dimensional array into a 2d array, with the axes specified by the `axis` parameter flattened into an index along rows, and the remaining axes flattened into an index along the columns. This operation can not be properly achieved by a simple reshape operatio...
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Convert a multi-dimensional array into a 2d array, with the axes specified by the `axis` parameter flattened into an index along rows, and the remaining axes flattened into an index along the columns. This operation can not be properly achieved by a simple reshape operation since a reshape would shuffle...
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python
train
proycon/clam
clam/common/converters.py
https://github.com/proycon/clam/blob/09d15cfc26d7cbe0f5976cdd5424dc446d10dbf3/clam/common/converters.py#L71-L90
def convertforinput(self,filepath, metadata=None): """Convert from target format into one of the source formats. Relevant if converters are used in InputTemplates. Metadata already is metadata for the to-be-generated file.""" super(CharEncodingConverter,self).convertforinput(filepath, metadata) ...
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Convert from target format into one of the source formats. Relevant if converters are used in InputTemplates. Metadata already is metadata for the to-be-generated file.
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python
train
getsentry/sentry-python
sentry_sdk/hub.py
https://github.com/getsentry/sentry-python/blob/a1d77722bdce0b94660ebf50b5c4a4645916d084/sentry_sdk/hub.py#L61-L72
def init(*args, **kwargs): """Initializes the SDK and optionally integrations. This takes the same arguments as the client constructor. """ global _initial_client client = Client(*args, **kwargs) Hub.current.bind_client(client) rv = _InitGuard(client) if client is not None: _ini...
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Initializes the SDK and optionally integrations. This takes the same arguments as the client constructor.
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python
train
pysal/esda
esda/tabular.py
https://github.com/pysal/esda/blob/2fafc6ec505e153152a86601d3e0fba080610c20/esda/tabular.py#L100-L154
def _bivariate_handler(df, x, y=None, w=None, inplace=True, pvalue='sim', outvals=None, **kwargs): """ Compute a descriptive bivariate statistic over two sets of columns, `x` and `y`, contained in `df`. Parameters ---------- df : pandas.DataFrame ...
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Compute a descriptive bivariate statistic over two sets of columns, `x` and `y`, contained in `df`. Parameters ---------- df : pandas.DataFrame dataframe in which columns `x` and `y` are contained x : string or list of strings one or more colum...
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python
train
dropbox/stone
stone/frontend/parser.py
https://github.com/dropbox/stone/blob/2e95cbcd1c48e05cca68c919fd8d24adec6b0f58/stone/frontend/parser.py#L638-L645
def p_route_deprecation(self, p): """route_deprecation : DEPRECATED | DEPRECATED BY route_name route_version | empty""" if len(p) == 5: p[0] = (True, p[3], p[4]) elif p[1]: p[0] = (True, None, None)
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route_deprecation : DEPRECATED | DEPRECATED BY route_name route_version | empty
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python
train
latture/json2table
json2table/json2table.py
https://github.com/latture/json2table/blob/8bd1363f54ee4fd608ffb7677761526184a9da83/json2table/json2table.py#L167-L190
def _list_of_dicts_to_column_headers(list_of_dicts): """ Detects if all entries in an list of ``dict``'s have identical keys. Returns the keys if all keys are the same and ``None`` otherwise. Parameters ---------- list_of_dicts : list List of dictionaries to ...
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Detects if all entries in an list of ``dict``'s have identical keys. Returns the keys if all keys are the same and ``None`` otherwise. Parameters ---------- list_of_dicts : list List of dictionaries to test for identical keys. Returns ------- list or...
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python
train
mikicz/arca
arca/backend/docker.py
https://github.com/mikicz/arca/blob/e67fdc00be473ecf8ec16d024e1a3f2c47ca882c/arca/backend/docker.py#L629-L644
def tar_runner(self): """ Returns a tar with the runner script. """ script_bytes = self.RUNNER.read_bytes() tarstream = BytesIO() tar = tarfile.TarFile(fileobj=tarstream, mode='w') tarinfo = tarfile.TarInfo(name="runner.py") tarinfo.size = len(script_bytes) ...
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Returns a tar with the runner script.
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python
train
PmagPy/PmagPy
pmagpy/pmagplotlib.py
https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/pmagpy/pmagplotlib.py#L2967-L3140
def plot_map_basemap(fignum, lats, lons, Opts): """ plot_map_basemap(fignum, lats,lons,Opts) makes a basemap with lats/lons requires working installation of Basemap Parameters: _______________ fignum : matplotlib figure number lats : array or list of latitudes lons : array or lis...
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plot_map_basemap(fignum, lats,lons,Opts) makes a basemap with lats/lons requires working installation of Basemap Parameters: _______________ fignum : matplotlib figure number lats : array or list of latitudes lons : array or list of longitudes Opts : dictionary of plotting options: ...
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python
train
erikvw/django-collect-offline
django_collect_offline/transaction/deserialize.py
https://github.com/erikvw/django-collect-offline/blob/3d5efd66c68e2db4b060a82b070ae490dc399ca7/django_collect_offline/transaction/deserialize.py#L4-L19
def deserialize(json_text=None): """Returns a generator of deserialized objects. Wraps django deserialize with defaults for JSON and natural keys. See https://docs.djangoproject.com/en/2.1/topics/serialization/ """ return serializers.deserialize( "json", json_text, ens...
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python
train
databricks/spark-sklearn
python/spark_sklearn/util.py
https://github.com/databricks/spark-sklearn/blob/cbde36f6311b73d967e2ec8a97040dfd71eca579/python/spark_sklearn/util.py#L34-L40
def _call_java(sc, java_obj, name, *args): """ Method copied from pyspark.ml.wrapper. Uses private Spark APIs. """ m = getattr(java_obj, name) java_args = [_py2java(sc, arg) for arg in args] return _java2py(sc, m(*java_args))
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Method copied from pyspark.ml.wrapper. Uses private Spark APIs.
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python
train
swharden/SWHLab
swhlab/core.py
https://github.com/swharden/SWHLab/blob/a86c3c65323cec809a4bd4f81919644927094bf5/swhlab/core.py#L300-L307
def get_protocol_sequence(self,sweep): """ given a sweep, return the protocol as condensed sequence. This is better for comparing similarities and determining steps. There should be no duplicate numbers. """ self.setsweep(sweep) return list(self.protoSeqX),list(se...
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given a sweep, return the protocol as condensed sequence. This is better for comparing similarities and determining steps. There should be no duplicate numbers.
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python
valid
chimera0/accel-brain-code
Reinforcement-Learning/pyqlearning/deep_q_learning.py
https://github.com/chimera0/accel-brain-code/blob/03661f6f544bed656269fcd4b3c23c9061629daa/Reinforcement-Learning/pyqlearning/deep_q_learning.py#L166-L179
def update_q(self, predicted_q_arr, reward_value_arr, next_max_q_arr): ''' Update Q. Args: predicted_q_arr: `np.ndarray` of predicted Q-Values. reward_value_arr: `np.ndarray` of reward values. next_max_q_arr: `np.ndarray` of maximum Q-Values ...
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Update Q. Args: predicted_q_arr: `np.ndarray` of predicted Q-Values. reward_value_arr: `np.ndarray` of reward values. next_max_q_arr: `np.ndarray` of maximum Q-Values in next time step. Returns: `np.ndarray` of real Q-Values.
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python
train
rueckstiess/mtools
mtools/mlogfilter/mlogfilter.py
https://github.com/rueckstiess/mtools/blob/a6a22910c3569c0c8a3908660ca218a4557e4249/mtools/mlogfilter/mlogfilter.py#L214-L236
def logfile_generator(self): """Yield each line of the file, or the next line if several files.""" if not self.args['exclude']: # ask all filters for a start_limit and fast-forward to the maximum start_limits = [f.start_limit for f in self.filters if h...
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python
train
CI-WATER/gsshapy
gsshapy/orm/spn.py
https://github.com/CI-WATER/gsshapy/blob/00fd4af0fd65f1614d75a52fe950a04fb0867f4c/gsshapy/orm/spn.py#L201-L209
def _writeConnections(self, connections, fileObject): """ Write Connections to File Method """ for connection in connections: fileObject.write('CONNECT %s %s %s\n' % ( connection.slinkNumber, connection.upSjuncNumber, connect...
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Write Connections to File Method
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python
train
aisthesis/pynance
pynance/tech/movave.py
https://github.com/aisthesis/pynance/blob/9eb0d78b60fe2a324ed328d026fedb6dbe8f7f41/pynance/tech/movave.py#L222-L259
def ratio_to_ave(window, eqdata, **kwargs): """ Return values expressed as ratios to the average over some number of prior sessions. Parameters ---------- eqdata : DataFrame Must contain a column with name matching `selection`, or, if `selection` is not specified, a column named...
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Return values expressed as ratios to the average over some number of prior sessions. Parameters ---------- eqdata : DataFrame Must contain a column with name matching `selection`, or, if `selection` is not specified, a column named 'Volume' window : int Interval over which t...
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python
train
globus/globus-cli
globus_cli/commands/transfer.py
https://github.com/globus/globus-cli/blob/336675ff24da64c5ee487243f39ae39fc49a7e14/globus_cli/commands/transfer.py#L143-L268
def transfer_command( batch, sync_level, recursive, destination, source, label, preserve_mtime, verify_checksum, encrypt, submission_id, dry_run, delete, deadline, skip_activation_check, notify, perf_cc, perf_p, perf_pp, perf_udt, ): """ ...
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Executor for `globus transfer`
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python
train
orb-framework/orb
orb/decorators.py
https://github.com/orb-framework/orb/blob/575be2689cb269e65a0a2678232ff940acc19e5a/orb/decorators.py#L12-L52
def virtual(cls, **options): """ Allows for defining virtual columns and collectors on models -- these are objects that are defined in code and not directly in a data store. :param cls: :param options: :return: """ def wrapped(func): param_name = inflection.underscore(func.__nam...
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Allows for defining virtual columns and collectors on models -- these are objects that are defined in code and not directly in a data store. :param cls: :param options: :return:
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python
train
fr33jc/bang
bang/stack.py
https://github.com/fr33jc/bang/blob/8f000713f88d2a9a8c1193b63ca10a6578560c16/bang/stack.py#L348-L376
def show_inventory(self, pretty=False): """ Satisfies the ``--list`` portion of ansible's external inventory API. Allows ``bang`` to be used as an external inventory script, for example when running ad-hoc ops tasks. For more details, see: http://ansible.cc/docs/api.html#extern...
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python
train
aws/sagemaker-python-sdk
src/sagemaker/estimator.py
https://github.com/aws/sagemaker-python-sdk/blob/a9e724c7d3f5572b68c3903548c792a59d99799a/src/sagemaker/estimator.py#L204-L236
def fit(self, inputs=None, wait=True, logs=True, job_name=None): """Train a model using the input training dataset. The API calls the Amazon SageMaker CreateTrainingJob API to start model training. The API uses configuration you provided to create the estimator and the specified input t...
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python
train
pandas-dev/pandas
pandas/core/strings.py
https://github.com/pandas-dev/pandas/blob/9feb3ad92cc0397a04b665803a49299ee7aa1037/pandas/core/strings.py#L702-L732
def _str_extract_noexpand(arr, pat, flags=0): """ Find groups in each string in the Series using passed regular expression. This function is called from str_extract(expand=False), and can return Series, DataFrame, or Index. """ from pandas import DataFrame, Index regex = re.compile(pat...
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Find groups in each string in the Series using passed regular expression. This function is called from str_extract(expand=False), and can return Series, DataFrame, or Index.
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python
train
widdowquinn/pyADHoRe
pyadhore/iadhore.py
https://github.com/widdowquinn/pyADHoRe/blob/b2ebbf6ae9c6afe9262eb0e3d9cf395970e38533/pyadhore/iadhore.py#L194-L212
def get_multiplicon_properties(self, value): """ Return a dictionary describing multiplicon data: id, parent, level, number_of_anchorpoints, profile_length, is_redundant and the contributing genome segments """ sql = '''SELECT id, parent, level, number_of_anchorpoints, ...
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Return a dictionary describing multiplicon data: id, parent, level, number_of_anchorpoints, profile_length, is_redundant and the contributing genome segments
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python
train
perseids-project/nemo_plokamos_plugin
nemo_plokamos_plugin/__init__.py
https://github.com/perseids-project/nemo_plokamos_plugin/blob/74a4ab719b1bda225394a51108bfce0f20404ff0/nemo_plokamos_plugin/__init__.py#L84-L103
def r_plokamos_proxy(self): """ Proxy to write to the annotation store :return: response from the remote query store :rtype: {str: Any} """ query = request.data if self.is_authorized(query,NemoOauthPlugin.current_user()['uri']): try: resp = ...
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Proxy to write to the annotation store :return: response from the remote query store :rtype: {str: Any}
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python
train
anthill/koala
koala/reader.py
https://github.com/anthill/koala/blob/393089fe081380506e73235db18a32b4e078d222/koala/reader.py#L41-L56
def repair_central_directory(zipFile, is_file_instance): # source: https://bitbucket.org/openpyxl/openpyxl/src/93604327bce7aac5e8270674579af76d390e09c0/openpyxl/reader/excel.py?at=default&fileviewer=file-view-default ''' trims trailing data from the central directory code taken from http://stackoverflow.com/a/7...
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trims trailing data from the central directory code taken from http://stackoverflow.com/a/7457686/570216, courtesy of Uri Cohen
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python
train
saltstack/salt
salt/engines/docker_events.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/engines/docker_events.py#L42-L105
def start(docker_url='unix://var/run/docker.sock', timeout=CLIENT_TIMEOUT, tag='salt/engines/docker_events', filters=None): ''' Scan for Docker events and fire events Example Config .. code-block:: yaml engines: - docker_events: docker_url...
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Scan for Docker events and fire events Example Config .. code-block:: yaml engines: - docker_events: docker_url: unix://var/run/docker.sock filters: event: - start - stop - die - oom ...
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python
train
enricobacis/wos
wos/utils.py
https://github.com/enricobacis/wos/blob/a51f4d1a983c2c7529caac3e09606a432223630d/wos/utils.py#L34-L37
def doi_to_wos(wosclient, doi): """Convert DOI to WOS identifier.""" results = query(wosclient, 'DO="%s"' % doi, './REC/UID', count=1) return results[0].lstrip('WOS:') if results else None
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Convert DOI to WOS identifier.
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python
train
broadinstitute/fiss
firecloud/fiss.py
https://github.com/broadinstitute/fiss/blob/dddf91547479506dbbafb69ec84d44dcc4a94ab4/firecloud/fiss.py#L468-L499
def expand_fc_groups(users): """ If user is a firecloud group, return all members of the group. Caveat is that only group admins may do this. """ groups = None for user in users: fcgroup = None if '@' not in user: fcgroup = user elif user.lower().endswith('@firecl...
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If user is a firecloud group, return all members of the group. Caveat is that only group admins may do this.
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python
train
deepmind/sonnet
sonnet/python/modules/basic_rnn.py
https://github.com/deepmind/sonnet/blob/00612ca3178964d86b556e062694d808ff81fcca/sonnet/python/modules/basic_rnn.py#L583-L649
def _build(self, input_sequence, state): """Connects the BidirectionalRNN module into the graph. Args: input_sequence: tensor (time, batch, [feature_1, ..]). It must be time_major. state: tuple of states for the forward and backward cores. Returns: A dict with forward/backard s...
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Connects the BidirectionalRNN module into the graph. Args: input_sequence: tensor (time, batch, [feature_1, ..]). It must be time_major. state: tuple of states for the forward and backward cores. Returns: A dict with forward/backard states and output sequences: "outputs":{...
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python
train
trentm/cmdln
examples/svn.py
https://github.com/trentm/cmdln/blob/55e980cf52c9b03e62d2349a7e62c9101d08ae10/examples/svn.py#L223-L238
def do_copy(self, subcmd, opts, *args): """Duplicate something in working copy or repository, remembering history. usage: copy SRC DST SRC and DST can each be either a working copy (WC) path or URL: WC -> WC: copy and schedule for addition (with history) ...
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Duplicate something in working copy or repository, remembering history. usage: copy SRC DST SRC and DST can each be either a working copy (WC) path or URL: WC -> WC: copy and schedule for addition (with history) WC -> URL: immediately commit a copy of WC to...
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python
train
klen/muffin-oauth
muffin_oauth.py
https://github.com/klen/muffin-oauth/blob/2d169840e2d08b9ba4a2f0915f99344c5f2c4aa6/muffin_oauth.py#L40-L49
def client(self, client_name, **params): """Initialize OAuth client from registry.""" if client_name not in self.cfg.clients: raise OAuthException('Unconfigured client: %s' % client_name) if client_name not in ClientRegistry.clients: raise OAuthException('Unsupported ser...
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Initialize OAuth client from registry.
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python
train
MacHu-GWU/superjson-project
superjson/pkg/dateutil/parser.py
https://github.com/MacHu-GWU/superjson-project/blob/782ca4b2edbd4b4018b8cedee42eeae7c921b917/superjson/pkg/dateutil/parser.py#L623-L1069
def _parse(self, timestr, dayfirst=None, yearfirst=None, fuzzy=False, fuzzy_with_tokens=False): """ Private method which performs the heavy lifting of parsing, called from ``parse()``, which passes on its ``kwargs`` to this function. :param timestr: The string...
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Private method which performs the heavy lifting of parsing, called from ``parse()``, which passes on its ``kwargs`` to this function. :param timestr: The string to parse. :param dayfirst: Whether to interpret the first value in an ambiguous 3-integer date (e...
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python
valid
belbio/bel
bel/nanopub/nanopubs.py
https://github.com/belbio/bel/blob/60333e8815625b942b4836903f3b618cf44b3771/bel/nanopub/nanopubs.py#L108-L138
def bel_edges( self, nanopub: Mapping[str, Any], namespace_targets: Mapping[str, List[str]] = {}, rules: List[str] = [], orthologize_target: str = None, ) -> List[Mapping[str, Any]]: """Create BEL Edges from BEL nanopub Args: nanopub (Mapping[str,...
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Create BEL Edges from BEL nanopub Args: nanopub (Mapping[str, Any]): bel nanopub namespace_targets (Mapping[str, List[str]]): what namespaces to canonicalize rules (List[str]): which computed edge rules to process, default is all, look at BEL Specification yam...
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python
train
openstack/networking-cisco
networking_cisco/plugins/cisco/cfg_agent/device_drivers/iosxe/iosxe_routing_driver.py
https://github.com/openstack/networking-cisco/blob/aa58a30aec25b86f9aa5952b0863045975debfa9/networking_cisco/plugins/cisco/cfg_agent/device_drivers/iosxe/iosxe_routing_driver.py#L600-L639
def _check_response(self, rpc_obj, snippet_name, conf_str=None): """This function checks the rpc response object for status. This function takes as input the response rpc_obj and the snippet name that was executed. It parses it to see, if the last edit operation was a success or not. ...
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This function checks the rpc response object for status. This function takes as input the response rpc_obj and the snippet name that was executed. It parses it to see, if the last edit operation was a success or not. <?xml version="1.0" encoding="UTF-8"?> <rpc-reply mess...
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python
train
SheffieldML/GPy
GPy/util/netpbmfile.py
https://github.com/SheffieldML/GPy/blob/54c32d79d289d622fb18b898aee65a2a431d90cf/GPy/util/netpbmfile.py#L209-L235
def _read_data(self, fh, byteorder='>'): """Return image data from open file as numpy array.""" fh.seek(len(self.header)) data = fh.read() dtype = 'u1' if self.maxval < 256 else byteorder + 'u2' depth = 1 if self.magicnum == b"P7 332" else self.depth shape = [-1, self.hei...
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Return image data from open file as numpy array.
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python
train
inasafe/inasafe
safe/utilities/utilities.py
https://github.com/inasafe/inasafe/blob/831d60abba919f6d481dc94a8d988cc205130724/safe/utilities/utilities.py#L130-L163
def humanise_seconds(seconds): """Utility function to humanise seconds value into e.g. 10 seconds ago. The function will try to make a nice phrase of the seconds count provided. .. note:: Currently seconds that amount to days are not supported. :param seconds: Mandatory seconds value e.g. 1100. ...
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Utility function to humanise seconds value into e.g. 10 seconds ago. The function will try to make a nice phrase of the seconds count provided. .. note:: Currently seconds that amount to days are not supported. :param seconds: Mandatory seconds value e.g. 1100. :type seconds: int :returns: A...
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python
train
roclark/sportsreference
sportsreference/mlb/roster.py
https://github.com/roclark/sportsreference/blob/ea0bae432be76450e137671d2998eb38f962dffd/sportsreference/mlb/roster.py#L565-L689
def _dataframe_fields(self): """ Creates a dictionary of all fields to include with DataFrame. With the result of the calls to class properties changing based on the class index value, the dictionary should be regenerated every time the index is changed when the dataframe proper...
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Creates a dictionary of all fields to include with DataFrame. With the result of the calls to class properties changing based on the class index value, the dictionary should be regenerated every time the index is changed when the dataframe property is requested. Returns -------...
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python
train
pneff/wsgiservice
wsgiservice/resource.py
https://github.com/pneff/wsgiservice/blob/03c064ac2e8c53a1aac9c7b99970f23cf79e20f4/wsgiservice/resource.py#L177-L191
def get_resource(self, resource, **kwargs): """Returns a new instance of the resource class passed in as resource. This is a helper to make future-compatibility easier when new arguments get added to the constructor. :param resource: Resource class to instantiate. Gets called with the ...
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Returns a new instance of the resource class passed in as resource. This is a helper to make future-compatibility easier when new arguments get added to the constructor. :param resource: Resource class to instantiate. Gets called with the named arguments as required for...
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python
train
KnowledgeLinks/rdfframework
rdfframework/connections/blazegraph.py
https://github.com/KnowledgeLinks/rdfframework/blob/9ec32dcc4bed51650a4b392cc5c15100fef7923a/rdfframework/connections/blazegraph.py#L132-L173
def check_status(self): """ tests both the ext_url and local_url to see if the database is running returns: True if a connection can be made False if the connection cannot me made """ def validate_namespace(self): if not self....
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tests both the ext_url and local_url to see if the database is running returns: True if a connection can be made False if the connection cannot me made
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python
train
CiscoDevNet/webexteamssdk
webexteamssdk/api/messages.py
https://github.com/CiscoDevNet/webexteamssdk/blob/6fc2cc3557e080ba4b2a380664cb2a0532ae45cd/webexteamssdk/api/messages.py#L137-L219
def create(self, roomId=None, toPersonId=None, toPersonEmail=None, text=None, markdown=None, files=None, **request_parameters): """Post a message, and optionally a attachment, to a room. The files parameter is a list, which accepts multiple values to allow for future expansion, b...
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Post a message, and optionally a attachment, to a room. The files parameter is a list, which accepts multiple values to allow for future expansion, but currently only one file may be included with the message. Args: roomId(basestring): The room ID. toPersonId(ba...
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python
test
pdkit/pdkit
pdkit/tremor_processor.py
https://github.com/pdkit/pdkit/blob/c7120263da2071bb139815fbdb56ca77b544f340/pdkit/tremor_processor.py#L172-L190
def amplitude_by_welch(self, data_frame): """ This methods uses the Welch method :cite:`Welch1967` to obtain the power spectral density, this is a robust alternative to using fft_signal & amplitude :param data_frame: the data frame :type data_frame: pandas.DataF...
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This methods uses the Welch method :cite:`Welch1967` to obtain the power spectral density, this is a robust alternative to using fft_signal & amplitude :param data_frame: the data frame :type data_frame: pandas.DataFrame :return: the ampl :rtype ampl: float ...
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python
train
pyrogram/pyrogram
pyrogram/vendor/typing/typing.py
https://github.com/pyrogram/pyrogram/blob/e7258a341ba905cfa86264c22040654db732ec1c/pyrogram/vendor/typing/typing.py#L1579-L1592
def no_type_check_decorator(decorator): """Decorator to give another decorator the @no_type_check effect. This wraps the decorator with something that wraps the decorated function in @no_type_check. """ @functools.wraps(decorator) def wrapped_decorator(*args, **kwds): func = decorator(...
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Decorator to give another decorator the @no_type_check effect. This wraps the decorator with something that wraps the decorated function in @no_type_check.
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python
train
evhub/coconut
coconut/compiler/matching.py
https://github.com/evhub/coconut/blob/ff97177344e7604e89a0a98a977a87ed2a56fc6d/coconut/compiler/matching.py#L642-L650
def build(self, stmts=None, set_check_var=True, invert=False): """Construct code for performing the match then executing stmts.""" out = "" if set_check_var: out += self.check_var + " = False\n" out += self.out() if stmts is not None: out += "if " + ("not ...
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Construct code for performing the match then executing stmts.
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python
train
mjirik/io3d
io3d/datawriter.py
https://github.com/mjirik/io3d/blob/ccaf3e378dcc967f2565d477fc27583fd0f61fcc/io3d/datawriter.py#L527-L542
def saveOverlayToDicomCopy(input_dcmfilelist, output_dicom_dir, overlays, crinfo, orig_shape): """ Save overlay to dicom. """ from . import datawriter as dwriter # import qmisc if not os.path.exists(output_dicom_dir): os.makedirs(output_dicom_dir) import imtools....
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Save overlay to dicom.
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python
train
RudolfCardinal/pythonlib
cardinal_pythonlib/file_io.py
https://github.com/RudolfCardinal/pythonlib/blob/0b84cb35f38bd7d8723958dae51b480a829b7227/cardinal_pythonlib/file_io.py#L104-L109
def write_text(filename: str, text: str) -> None: """ Writes text to a file. """ with open(filename, 'w') as f: # type: TextIO print(text, file=f)
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Writes text to a file.
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python
train
acorg/dark-matter
dark/blast/alignments.py
https://github.com/acorg/dark-matter/blob/c78a1bf262667fa5db3548fa7066c4ec14d0551d/dark/blast/alignments.py#L145-L193
def getSubjectSequence(self, title): """ Obtain information about a subject sequence given its title. This information is cached in self._subjectTitleToSubject. It can be obtained from either a) an sqlite database (given via the sqliteDatabaseFilename argument to __init__), b) t...
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Obtain information about a subject sequence given its title. This information is cached in self._subjectTitleToSubject. It can be obtained from either a) an sqlite database (given via the sqliteDatabaseFilename argument to __init__), b) the FASTA that was originally given to BLAST (via ...
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python
train
gamechanger/mongothon
mongothon/queries.py
https://github.com/gamechanger/mongothon/blob/5305bdae8e38d09bfe7881f1edc99ac0a2e6b96b/mongothon/queries.py#L80-L89
def cursor(self): """ Returns a cursor for the currently assembled query, creating it if it doesn't already exist. """ if not self._active_cursor: self._active_cursor = self.model.find(self.query, self.projection or No...
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Returns a cursor for the currently assembled query, creating it if it doesn't already exist.
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python
train
mdiener/grace
grace/py27/slimit/parser.py
https://github.com/mdiener/grace/blob/2dab13a2cf636da5da989904c5885166fc94d36d/grace/py27/slimit/parser.py#L783-L793
def p_conditional_expr(self, p): """ conditional_expr \ : logical_or_expr | logical_or_expr CONDOP assignment_expr COLON assignment_expr """ if len(p) == 2: p[0] = p[1] else: p[0] = ast.Conditional( predicate=p[1], c...
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conditional_expr \ : logical_or_expr | logical_or_expr CONDOP assignment_expr COLON assignment_expr
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python
train
rameshg87/pyremotevbox
pyremotevbox/ZSI/wstools/c14n.py
https://github.com/rameshg87/pyremotevbox/blob/123dffff27da57c8faa3ac1dd4c68b1cf4558b1a/pyremotevbox/ZSI/wstools/c14n.py#L224-L233
def _do_text(self, node): '''_do_text(self, node) -> None Process a text or CDATA node. Render various special characters as their C14N entity representations.''' if not _in_subset(self.subset, node): return s = string.replace(node.data, "&", "&amp;") s = string.replace(...
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_do_text(self, node) -> None Process a text or CDATA node. Render various special characters as their C14N entity representations.
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python
train
xtuml/pyxtuml
xtuml/persist.py
https://github.com/xtuml/pyxtuml/blob/7dd9343b9a0191d1db1887ab9288d0a026608d9a/xtuml/persist.py#L185-L193
def persist_instances(metamodel, path, mode='w'): ''' Persist all instances in a *metamodel* by serializing them and saving to a *path* on disk. ''' with open(path, mode) as f: for inst in metamodel.instances: s = serialize_instance(inst) f.write(s)
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Persist all instances in a *metamodel* by serializing them and saving to a *path* on disk.
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python
test
viswa-swami/python-foscam
libpyfoscam/foscam.py
https://github.com/viswa-swami/python-foscam/blob/d76f2f7016959b7b758751637fad103c9032e488/libpyfoscam/foscam.py#L722-L729
def set_h264_frm_ref_mode(self, mode=1, callback=None): ''' Set frame shipping reference mode of H264 encode stream. params: `mode`: see docstr of meth::get_h264_frm_ref_mode ''' params = {'mode': mode} return self.execute_command('setH264FrmRefMode', params, ...
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Set frame shipping reference mode of H264 encode stream. params: `mode`: see docstr of meth::get_h264_frm_ref_mode
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python
train
KnowledgeLinks/rdfframework
rdfframework/rdfclass/rdfclass.py
https://github.com/KnowledgeLinks/rdfframework/blob/9ec32dcc4bed51650a4b392cc5c15100fef7923a/rdfframework/rdfclass/rdfclass.py#L32-L49
def find(value): """ returns a dictionary of rdfclasses based on the a lowercase search args: value: the value to search by """ value = str(value).lower() rtn_dict = RegistryDictionary() for attr in dir(MODULE.rdfclass): if value in attr.l...
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returns a dictionary of rdfclasses based on the a lowercase search args: value: the value to search by
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python
train
DataBiosphere/toil
src/toil/lib/bioio.py
https://github.com/DataBiosphere/toil/blob/a8252277ff814e7bee0971139c2344f88e44b644/src/toil/lib/bioio.py#L199-L203
def absSymPath(path): """like os.path.abspath except it doesn't dereference symlinks """ curr_path = os.getcwd() return os.path.normpath(os.path.join(curr_path, path))
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like os.path.abspath except it doesn't dereference symlinks
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python
train
hyperledger/indy-plenum
stp_zmq/zstack.py
https://github.com/hyperledger/indy-plenum/blob/dcd144e238af7f17a869ffc9412f13dc488b7020/stp_zmq/zstack.py#L584-L629
def connect(self, name=None, remoteId=None, ha=None, verKeyRaw=None, publicKeyRaw=None): """ Connect to the node specified by name. """ if not name: raise ValueError('Remote name should be specifi...
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Connect to the node specified by name.
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python
train
carpedm20/fbchat
fbchat/_client.py
https://github.com/carpedm20/fbchat/blob/f480d68b5773473e6daba7f66075ee30e8d737a8/fbchat/_client.py#L2372-L2381
def muteThreadMentions(self, mute=True, thread_id=None): """ Mutes thread mentions :param mute: Boolean. True to mute, False to unmute :param thread_id: User/Group ID to mute. See :ref:`intro_threads` """ thread_id, thread_type = self._getThread(thread_id, None) ...
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Mutes thread mentions :param mute: Boolean. True to mute, False to unmute :param thread_id: User/Group ID to mute. See :ref:`intro_threads`
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python
train
CalebBell/fluids
fluids/two_phase.py
https://github.com/CalebBell/fluids/blob/57f556752e039f1d3e5a822f408c184783db2828/fluids/two_phase.py#L2569-L2657
def two_phase_dP_gravitational(angle, z, alpha_i, rho_li, rho_gi, alpha_o=None, rho_lo=None, rho_go=None, g=g): r'''This function handles calculation of two-phase liquid-gas pressure drop due to gravitation for flow inside channels. This is a discrete calculation for a segm...
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r'''This function handles calculation of two-phase liquid-gas pressure drop due to gravitation for flow inside channels. This is a discrete calculation for a segment with a known difference in elevation (and ideally known inlet and outlet pressures so density dependence can be included). .. math:...
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python
train
vinci1it2000/schedula
examples/processing_chain/process.py
https://github.com/vinci1it2000/schedula/blob/addb9fd685be81544b796c51383ac00a31543ce9/examples/processing_chain/process.py#L13-L25
def read_excel(input_fpath): """ Reads the excel file. :param input_fpath: Input file path. :type input_fpath: str :return: Raw Data. :rtype: dict """ return {k: v.values for k, v in pd.read_excel(input_fpath).items()}
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Reads the excel file. :param input_fpath: Input file path. :type input_fpath: str :return: Raw Data. :rtype: dict
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python
train
aparo/pyes
pyes/scriptfields.py
https://github.com/aparo/pyes/blob/712eb6095961755067b2b5baa262008ade6584b3/pyes/scriptfields.py#L48-L59
def add_parameter(self, field_name, param_name, param_value): """ Add a parameter to a field into script_fields The ScriptFields object will be returned, so calls to this can be chained. """ try: self.fields[field_name]['params'][param_name] = param_value exc...
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Add a parameter to a field into script_fields The ScriptFields object will be returned, so calls to this can be chained.
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python
train
hobson/aima
aima/text.py
https://github.com/hobson/aima/blob/3572b2fb92039b4a1abe384be8545560fbd3d470/aima/text.py#L126-L138
def query(self, query_text, n=10): """Return a list of n (score, docid) pairs for the best matches. Also handle the special syntax for 'learn: command'.""" if query_text.startswith("learn:"): doctext = os.popen(query_text[len("learn:"):], 'r').read() self.index_document(d...
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Return a list of n (score, docid) pairs for the best matches. Also handle the special syntax for 'learn: command'.
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python
valid
xflows/rdm
rdm/helpers.py
https://github.com/xflows/rdm/blob/d984e2a0297e5fa8d799953bbd0dba79b05d403d/rdm/helpers.py#L5-L18
def arff_to_orange_table(arff): ''' Convert a string in arff format to an Orange table. :param arff: string in arff format :return: Orange data table object constructed from the arff string :rtype: orange.ExampleTable ''' with tempfile.NamedTemporaryFile(suffix='.arff', delete=...
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Convert a string in arff format to an Orange table. :param arff: string in arff format :return: Orange data table object constructed from the arff string :rtype: orange.ExampleTable
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python
train
tensorflow/tensorboard
tensorboard/plugins/image/images_plugin.py
https://github.com/tensorflow/tensorboard/blob/8e5f497b48e40f2a774f85416b8a35ac0693c35e/tensorboard/plugins/image/images_plugin.py#L77-L93
def is_active(self): """The images plugin is active iff any run has at least one relevant tag.""" if self._db_connection_provider: # The plugin is active if one relevant tag can be found in the database. db = self._db_connection_provider() cursor = db.execute( ''' SELECT 1 ...
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The images plugin is active iff any run has at least one relevant tag.
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python
train
anteater/anteater
anteater/src/get_lists.py
https://github.com/anteater/anteater/blob/a980adbed8563ef92494f565acd371e91f50f155/anteater/src/get_lists.py#L209-L232
def ignore_directories(self, project): """ Gathers a list of directories to ignore """ project_list = False try: ignore_directories = il['ignore_directories'] except KeyError: logger.error('Key Error processing ignore_directories list values') try: ...
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Gathers a list of directories to ignore
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python
train
erdc/RAPIDpy
RAPIDpy/gis/muskingum.py
https://github.com/erdc/RAPIDpy/blob/50e14e130554b254a00ff23b226cd7e4c6cfe91a/RAPIDpy/gis/muskingum.py#L227-L259
def CreateMuskingumKFile(lambda_k, in_kfac_file, out_k_file): """ Creates muskingum k file from kfac file. Parameters ---------- lambda_k: float The value for lambda given from RAPID after the calibration process. If no calibration h...
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Creates muskingum k file from kfac file. Parameters ---------- lambda_k: float The value for lambda given from RAPID after the calibration process. If no calibration has been performed, 0.35 is reasonable. in_kfac_file: str The path to the input kfac file. out_k_file: str ...
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python
train
ultrabug/py3status
py3status/autodoc.py
https://github.com/ultrabug/py3status/blob/4c105f1b44f7384ca4f7da5f821a47e468c7dee2/py3status/autodoc.py#L300-L317
def create_py3_docs(): """ Create the include files for py3 documentation. """ # we want the correct .rst 'type' for our data trans = {"methods": "function", "exceptions": "exception", "constants": "attribute"} data = get_py3_info() for k, v in data.items(): output = [] for n...
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Create the include files for py3 documentation.
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python
train
fastai/fastai
fastai/train.py
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/train.py#L66-L75
def on_epoch_end(self, n_epochs:int, last_metrics:MetricsList, **kwargs)->bool: "If we have `last_metrics` plot them in our pbar graph" if last_metrics is not None and np.any(last_metrics): rec = self.learn.recorder iters = range_of(rec.losses) val_iter = np.array(rec...
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If we have `last_metrics` plot them in our pbar graph
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python
train
pyviz/holoviews
setup.py
https://github.com/pyviz/holoviews/blob/ae0dd2f3de448b0ca5e9065aabd6ef8d84c7e655/setup.py#L55-L77
def embed_version(basepath, ref='v0.2.2'): """ Autover is purely a build time dependency in all cases (conda and pip) except for when you use pip's remote git support [git+url] as 1) you need a dynamically changing version and 2) the environment starts off clean with zero dependencies installed. ...
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Autover is purely a build time dependency in all cases (conda and pip) except for when you use pip's remote git support [git+url] as 1) you need a dynamically changing version and 2) the environment starts off clean with zero dependencies installed. This function acts as a fallback to make Version avail...
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python
train
saltstack/salt
salt/returners/pgjsonb.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/returners/pgjsonb.py#L347-L358
def get_load(jid): ''' Return the load data that marks a specified jid ''' with _get_serv(ret=None, commit=True) as cur: sql = '''SELECT load FROM jids WHERE jid = %s;''' cur.execute(sql, (jid,)) data = cur.fetchone() if data: return data[0] return {}
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Return the load data that marks a specified jid
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python
train
OLC-Bioinformatics/sipprverse
pointfinder/PointFinder.py
https://github.com/OLC-Bioinformatics/sipprverse/blob/d4f10cdf8e1a39dac0953db61c21c97efc6006de/pointfinder/PointFinder.py#L933-L1046
def write_output(gene, gene_name, mis_matches, known_mutations, known_stop_codon, unknown_flag, GENES): """ This function takes a gene name a list of mis matches found betreewn subject and query of this gene, the dictionary of known mutation in the point finder database, and the flag telling weather th...
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This function takes a gene name a list of mis matches found betreewn subject and query of this gene, the dictionary of known mutation in the point finder database, and the flag telling weather the user wants unknown mutations to be reported. All mis matches are looked up in the known mutation dict to se if...
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python
train
log2timeline/plaso
plaso/multi_processing/task_manager.py
https://github.com/log2timeline/plaso/blob/9c564698d2da3ffbe23607a3c54c0582ea18a6cc/plaso/multi_processing/task_manager.py#L76-L98
def PushTask(self, task): """Pushes a task onto the heap. Args: task (Task): task. Raises: ValueError: if the size of the storage file is not set in the task. """ storage_file_size = getattr(task, 'storage_file_size', None) if not storage_file_size: raise ValueError('Task sto...
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Pushes a task onto the heap. Args: task (Task): task. Raises: ValueError: if the size of the storage file is not set in the task.
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python
train
cltk/cltk
cltk/text_reuse/text_reuse.py
https://github.com/cltk/cltk/blob/ed9c025b7ec43c949481173251b70e05e4dffd27/cltk/text_reuse/text_reuse.py#L92-L113
def compare_sliding_window(self, str_a, str_b, window_length=50, curse_forward=20): """ Compare two strings with a sliding window method based on window_length and curse_forward values :param string_a: str :param string_b: str :param window_length: int :param curse_forwar...
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Compare two strings with a sliding window method based on window_length and curse_forward values :param string_a: str :param string_b: str :param window_length: int :param curse_forward: int :return: list [[Comparison]]
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python
train
synw/dataswim
dataswim/data/select.py
https://github.com/synw/dataswim/blob/4a4a53f80daa7cd8e8409d76a19ce07296269da2/dataswim/data/select.py#L41-L49
def unique_(self, col): """ Returns unique values in a column """ try: df = self.df.drop_duplicates(subset=[col], inplace=False) return list(df[col]) except Exception as e: self.err(e, "Can not select unique data")
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python
train
inveniosoftware/invenio-webhooks
invenio_webhooks/views.py
https://github.com/inveniosoftware/invenio-webhooks/blob/f407cb2245464543ee474a81189fb9d3978bdde5/invenio_webhooks/views.py#L168-L171
def get(self, receiver_id=None, event_id=None): """Handle GET request.""" event = self._get_event(receiver_id, event_id) return make_response(event)
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Handle GET request.
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python
train
lemieuxl/pyGenClean
pyGenClean/PlateBias/plate_bias.py
https://github.com/lemieuxl/pyGenClean/blob/6173a48ccc0cf3a3bd711b1f2a1fa16248b8bf55/pyGenClean/PlateBias/plate_bias.py#L34-L73
def main(argString=None): """The main function of this module. :param argString: the options. :type argString: list These are the steps: 1. Runs a plate bias analysis using Plink (:py:func:`executePlateBiasAnalysis`). 2. Extracts the list of significant markers after plate bias analys...
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python
train
SuperCowPowers/bat
bat/live_simulator.py
https://github.com/SuperCowPowers/bat/blob/069e6bc52843dc07760969c531cc442ca7da8e0c/bat/live_simulator.py#L48-L67
def readrows(self): """Using the BroLogReader this method yields each row of the log file replacing timestamps, looping and emitting rows based on EPS rate """ # Loop forever or until max_rows is reached num_rows = 0 while True: # Yield the rows from the ...
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python
train
graphql-python/graphql-core-next
graphql/language/parser.py
https://github.com/graphql-python/graphql-core-next/blob/073dce3f002f897d40f9348ffd8f107815160540/graphql/language/parser.py#L928-L940
def parse_union_type_extension(lexer: Lexer) -> UnionTypeExtensionNode: """UnionTypeExtension""" start = lexer.token expect_keyword(lexer, "extend") expect_keyword(lexer, "union") name = parse_name(lexer) directives = parse_directives(lexer, True) types = parse_union_member_types(lexer) ...
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UnionTypeExtension
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python
train
williballenthin/python-pyqt5-hexview
hexview/hexview.py
https://github.com/williballenthin/python-pyqt5-hexview/blob/461feb286dfde60bdbc12b3fb772d650f4b8ba71/hexview/hexview.py#L252-L255
def _bselect(self, selection, start_bindex, end_bindex): """ add the given buffer indices to the given QItemSelection, both byte and char panes """ selection.select(self._model.index2qindexb(start_bindex), self._model.index2qindexb(end_bindex)) selection.select(self._model.index2qindexc(start_bi...
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add the given buffer indices to the given QItemSelection, both byte and char panes
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python
train
gitpython-developers/GitPython
git/objects/fun.py
https://github.com/gitpython-developers/GitPython/blob/1f66e25c25cde2423917ee18c4704fff83b837d1/git/objects/fun.py#L120-L185
def traverse_trees_recursive(odb, tree_shas, path_prefix): """ :return: list with entries according to the given binary tree-shas. The result is encoded in a list of n tuple|None per blob/commit, (n == len(tree_shas)), where * [0] == 20 byte sha * [1] == mode as int * [2]...
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:return: list with entries according to the given binary tree-shas. The result is encoded in a list of n tuple|None per blob/commit, (n == len(tree_shas)), where * [0] == 20 byte sha * [1] == mode as int * [2] == path relative to working tree root The entry tuple is None ...
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python
train