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jlaine/python-netfilter
netfilter/table.py
https://github.com/jlaine/python-netfilter/blob/e4942c0f6a654a985049b629ead3dc6dcdb30145/netfilter/table.py#L75-L82
def flush_chain(self, chainname=None): """Flushes the specified chain (all the chains in the table if none is given). This is equivalent to deleting all the rules one by one. """ args = ['-F'] if chainname: args.append(chainname) self.__run_iptables(args)
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Flushes the specified chain (all the chains in the table if none is given). This is equivalent to deleting all the rules one by one.
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python
train
vaexio/vaex
packages/vaex-core/vaex/dataframe.py
https://github.com/vaexio/vaex/blob/a45b672f8287afca2ada8e36b74b604b9b28dd85/packages/vaex-core/vaex/dataframe.py#L1595-L1631
def plot_widget(self, x, y, z=None, grid=None, shape=256, limits=None, what="count(*)", figsize=None, f="identity", figure_key=None, fig=None, axes=None, xlabel=None, ylabel=None, title=None, show=True, selection=[None, True], colormap="afmhot", grid_limits=None, normalize="norma...
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Viz 1d, 2d or 3d in a Jupyter notebook .. note:: This API is not fully settled and may change in the future Example: >>> df.plot_widget(df.x, df.y, backend='bqplot') >>> df.plot_widget(df.pickup_longitude, df.pickup_latitude, backend='ipyleaflet') :param backend: ...
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python
test
Microsoft/nni
src/sdk/pynni/nni/networkmorphism_tuner/graph_transformer.py
https://github.com/Microsoft/nni/blob/c7cc8db32da8d2ec77a382a55089f4e17247ce41/src/sdk/pynni/nni/networkmorphism_tuner/graph_transformer.py#L38-L55
def to_wider_graph(graph): ''' wider graph ''' weighted_layer_ids = graph.wide_layer_ids() weighted_layer_ids = list( filter(lambda x: graph.layer_list[x].output.shape[-1], weighted_layer_ids) ) wider_layers = sample(weighted_layer_ids, 1) for layer_id in wider_layers: layer...
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wider graph
[ "wider", "graph" ]
python
train
hvac/hvac
hvac/api/secrets_engines/kv_v1.py
https://github.com/hvac/hvac/blob/cce5b86889193f622c2a72a4a1b7e1c9c8aff1ce/hvac/api/secrets_engines/kv_v1.py#L36-L58
def list_secrets(self, path, mount_point=DEFAULT_MOUNT_POINT): """Return a list of key names at the specified location. Folders are suffixed with /. The input must be a folder; list on a file will not return a value. Note that no policy-based filtering is performed on keys; do not encode sensit...
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Return a list of key names at the specified location. Folders are suffixed with /. The input must be a folder; list on a file will not return a value. Note that no policy-based filtering is performed on keys; do not encode sensitive information in key names. The values themselves are not access...
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python
train
cltl/KafNafParserPy
KafNafParserPy/term_data.py
https://github.com/cltl/KafNafParserPy/blob/9bc32e803c176404b255ba317479b8780ed5f569/KafNafParserPy/term_data.py#L338-L348
def add_term(self,term_obj): """ Adds a term object to the layer @type term_obj: L{Cterm} @param term_obj: the term object """ if term_obj.get_id() in self.idx: raise ValueError("Term with id {} already exists!" .format(term_obj.ge...
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Adds a term object to the layer @type term_obj: L{Cterm} @param term_obj: the term object
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python
train
PolyJIT/benchbuild
benchbuild/likwid.py
https://github.com/PolyJIT/benchbuild/blob/9ad2ec54d96e97b642b1f06eddcbad9ba7aeaf58/benchbuild/likwid.py#L126-L152
def get_measurements(region, core_info, data, extra_offset=0): """ Get the complete measurement info from likwid's region info. Args: region: The region we took a measurement in. core_info: The core information. data: The raw data. extra_offset (int): default = 0 Return...
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Get the complete measurement info from likwid's region info. Args: region: The region we took a measurement in. core_info: The core information. data: The raw data. extra_offset (int): default = 0 Returns (list((region, metric, core, value))): A list of measurement tupl...
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python
train
saltstack/salt
salt/cli/support/collector.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/cli/support/collector.py#L203-L220
def _setup_fun_config(self, fun_conf): ''' Setup function configuration. :param conf: :return: ''' conf = copy.deepcopy(self.config) conf['file_client'] = 'local' conf['fun'] = '' conf['arg'] = [] conf['kwarg'] = {} conf['cache_job...
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Setup function configuration. :param conf: :return:
[ "Setup", "function", "configuration", "." ]
python
train
Dallinger/Dallinger
dallinger/models.py
https://github.com/Dallinger/Dallinger/blob/76ca8217c709989c116d0ebd8fca37bd22f591af/dallinger/models.py#L1415-L1424
def fail(self): """Fail a vector.""" if self.failed is True: raise AttributeError("Cannot fail {} - it has already failed.".format(self)) else: self.failed = True self.time_of_death = timenow() for t in self.transmissions(): t.fail...
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Fail a vector.
[ "Fail", "a", "vector", "." ]
python
train
lpantano/seqcluster
seqcluster/seqbuster/__init__.py
https://github.com/lpantano/seqcluster/blob/774e23add8cd4fdc83d626cea3bd1f458e7d060d/seqcluster/seqbuster/__init__.py#L130-L146
def _read_gtf(gtf): """ Load GTF file with precursor positions on genome """ if not gtf: return gtf db = defaultdict(list) with open(gtf) as in_handle: for line in in_handle: if line.startswith("#"): continue cols = line.strip().split("\t")...
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Load GTF file with precursor positions on genome
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python
train
rodluger/everest
everest/missions/k2/k2.py
https://github.com/rodluger/everest/blob/6779591f9f8b3556847e2fbf761bdfac7520eaea/everest/missions/k2/k2.py#L1766-L1785
def TargetDirectory(ID, season, relative=False, **kwargs): ''' Returns the location of the :py:mod:`everest` data on disk for a given target. :param ID: The target ID :param int season: The target season number :param bool relative: Relative path? Default :py:obj:`False` ''' if season...
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Returns the location of the :py:mod:`everest` data on disk for a given target. :param ID: The target ID :param int season: The target season number :param bool relative: Relative path? Default :py:obj:`False`
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python
train
senaite/senaite.core
bika/lims/browser/worksheet/views/analyses.py
https://github.com/senaite/senaite.core/blob/7602ce2ea2f9e81eb34e20ce17b98a3e70713f85/bika/lims/browser/worksheet/views/analyses.py#L374-L397
def fill_slots_headers(self, items): """Generates the header cell for each slot. For each slot, the first cell displays information about the parent all analyses within that given slot have in common, such as the AR Id, SampleType, etc. :param items: dictionary with items to be rendered...
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Generates the header cell for each slot. For each slot, the first cell displays information about the parent all analyses within that given slot have in common, such as the AR Id, SampleType, etc. :param items: dictionary with items to be rendered in the list
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python
train
bheinzerling/pyrouge
pyrouge/Rouge155.py
https://github.com/bheinzerling/pyrouge/blob/afeb37dd2608f1399e2fb24a4ee2fe10a2a18603/pyrouge/Rouge155.py#L208-L235
def convert_text_to_rouge_format(text, title="dummy title"): """ Convert a text to a format ROUGE understands. The text is assumed to contain one sentence per line. text: The text to convert, containg one sentence per line. title: Optional title for the text. The titl...
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Convert a text to a format ROUGE understands. The text is assumed to contain one sentence per line. text: The text to convert, containg one sentence per line. title: Optional title for the text. The title will appear in the converted file, but doesn't seem to have...
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python
train
zetaops/zengine
zengine/messaging/lib.py
https://github.com/zetaops/zengine/blob/b5bc32d3b37bca799f8985be916f04528ac79e4a/zengine/messaging/lib.py#L89-L92
def encrypt_password(self): """ encrypt password if not already encrypted """ if self.password and not self.password.startswith('$pbkdf2'): self.set_password(self.password)
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encrypt password if not already encrypted
[ "encrypt", "password", "if", "not", "already", "encrypted" ]
python
train
jaywink/federation
federation/protocols/diaspora/protocol.py
https://github.com/jaywink/federation/blob/59d31bb37e662891dbea72c1dee05dc53146c78b/federation/protocols/diaspora/protocol.py#L33-L52
def identify_request(request: RequestType): """Try to identify whether this is a Diaspora request. Try first public message. Then private message. The check if this is a legacy payload. """ # Private encrypted JSON payload try: data = json.loads(decode_if_bytes(request.body)) if "en...
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Try to identify whether this is a Diaspora request. Try first public message. Then private message. The check if this is a legacy payload.
[ "Try", "to", "identify", "whether", "this", "is", "a", "Diaspora", "request", "." ]
python
train
inveniosoftware/invenio-files-rest
invenio_files_rest/models.py
https://github.com/inveniosoftware/invenio-files-rest/blob/59a950da61cc8d5882a03c6fde6db2e2ed10befd/invenio_files_rest/models.py#L1353-L1365
def delete(cls, object_version, key=None): """Delete tags. :param object_version: The object version instance or id. :param key: Key of the tag to delete. Default: delete all tags. """ with db.session.begin_nested(): q = cls.query.filter_by( ...
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Delete tags. :param object_version: The object version instance or id. :param key: Key of the tag to delete. Default: delete all tags.
[ "Delete", "tags", "." ]
python
train
PlaidWeb/Pushl
pushl/feeds.py
https://github.com/PlaidWeb/Pushl/blob/5ea92275c37a6c1989e3d5f53e26c6e0ebfb9a8c/pushl/feeds.py#L95-L137
async def get_feed(config, url): """ Get a feed Arguments: config -- the configuration url -- The URL of the feed retval -- a tuple of feed,previous_version,changed """ LOGGER.debug("++WAIT: cache get feed %s", url) previous = config.cache.get( 'feed', url, schema_version=SCH...
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Get a feed Arguments: config -- the configuration url -- The URL of the feed retval -- a tuple of feed,previous_version,changed
[ "Get", "a", "feed" ]
python
train
aschn/drf-tracking
rest_framework_tracking/base_mixins.py
https://github.com/aschn/drf-tracking/blob/1910f413bd5166bbeaf694c7c0101f331af4f47d/rest_framework_tracking/base_mixins.py#L100-L106
def _get_ip_address(self, request): """Get the remote ip address the request was generated from. """ ipaddr = request.META.get("HTTP_X_FORWARDED_FOR", None) if ipaddr: # X_FORWARDED_FOR returns client1, proxy1, proxy2,... return ipaddr.split(",")[0].strip() return...
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Get the remote ip address the request was generated from.
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python
train
pmuller/versions
versions/packages.py
https://github.com/pmuller/versions/blob/951bc3fd99b6a675190f11ee0752af1d7ff5b440/versions/packages.py#L84-L93
def build_options(self): """The package build options. :returns: :func:`set` of build options strings. """ if self.version.build_metadata: return set(self.version.build_metadata.split('.')) else: return set()
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The package build options. :returns: :func:`set` of build options strings.
[ "The", "package", "build", "options", "." ]
python
train
ARMmbed/mbed-cloud-sdk-python
src/mbed_cloud/subscribe/channels/channel.py
https://github.com/ARMmbed/mbed-cloud-sdk-python/blob/c0af86fb2cdd4dc7ed26f236139241067d293509/src/mbed_cloud/subscribe/channels/channel.py#L109-L123
def _filter_optional_keys(self, data): """Filtering for this channel, based on key-value matching""" for filter_key, filter_value in (self._optional_filters or {}).items(): data_value = data.get(filter_key) LOG.debug( 'optional keys filter %s: %s (%s)', ...
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Filtering for this channel, based on key-value matching
[ "Filtering", "for", "this", "channel", "based", "on", "key", "-", "value", "matching" ]
python
train
crytic/slither
slither/printers/summary/variable_order.py
https://github.com/crytic/slither/blob/04c147f7e50223c6af458ca430befae747ccd259/slither/printers/summary/variable_order.py#L15-L31
def output(self, _filename): """ _filename is not used Args: _filename(string) """ txt = '' for contract in self.slither.contracts_derived: txt += '\n{}:\n'.format(contract.name) table = PrettyTable(['Name', 'Type']) ...
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_filename is not used Args: _filename(string)
[ "_filename", "is", "not", "used", "Args", ":", "_filename", "(", "string", ")" ]
python
train
polyaxon/polyaxon-cli
polyaxon_cli/cli/run.py
https://github.com/polyaxon/polyaxon-cli/blob/a7f5eed74d4d909cad79059f3c21c58606881449/polyaxon_cli/cli/run.py#L48-L211
def run(ctx, project, file, name, tags, description, ttl, u, l): # pylint:disable=redefined-builtin """Run polyaxonfile specification. Examples: \b ```bash $ polyaxon run -f file -f file_override ... ``` Upload before running \b ```bash $ polyaxon run -f file -u ``` ...
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Run polyaxonfile specification. Examples: \b ```bash $ polyaxon run -f file -f file_override ... ``` Upload before running \b ```bash $ polyaxon run -f file -u ``` Run and set description and tags for this run \b ```bash $ polyaxon run -f file -u --descripti...
[ "Run", "polyaxonfile", "specification", "." ]
python
valid
Neurita/boyle
boyle/nifti/sets.py
https://github.com/Neurita/boyle/blob/2dae7199849395a209c887d5f30506e1de8a9ad9/boyle/nifti/sets.py#L100-L132
def check_compatibility(self, one_img, another_img=None): """ Parameters ---------- one_img: str or img-like object. See NeuroImage constructor docstring. anoter_img: str or img-like object. See NeuroImage constructor docstring. If None will u...
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Parameters ---------- one_img: str or img-like object. See NeuroImage constructor docstring. anoter_img: str or img-like object. See NeuroImage constructor docstring. If None will use the first image of self.images, if there is any. Raises --...
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python
valid
jhermann/rituals
src/rituals/util/scm/__init__.py
https://github.com/jhermann/rituals/blob/1534f50d81e19bbbe799e2eba0acdefbce047c06/src/rituals/util/scm/__init__.py#L33-L42
def auto_detect(workdir): """ Return string signifying the SCM used in the given directory. Currently, 'git' is supported. Anything else returns 'unknown'. """ # Any additions here also need a change to `SCM_PROVIDERS`! if os.path.isdir(os.path.join(workdir, '.git')) and os.path.isfile(os.path....
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Return string signifying the SCM used in the given directory. Currently, 'git' is supported. Anything else returns 'unknown'.
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python
valid
log2timeline/plaso
plaso/parsers/olecf_plugins/dtfabric_plugin.py
https://github.com/log2timeline/plaso/blob/9c564698d2da3ffbe23607a3c54c0582ea18a6cc/plaso/parsers/olecf_plugins/dtfabric_plugin.py#L103-L142
def _ReadData(self, file_object, file_offset, data_size): """Reads data. Args: file_object (dvfvs.FileIO): a file-like object to read. file_offset (int): offset of the data relative to the start of the file-like object. data_size (int): size of the data. The resulting data size much...
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Reads data. Args: file_object (dvfvs.FileIO): a file-like object to read. file_offset (int): offset of the data relative to the start of the file-like object. data_size (int): size of the data. The resulting data size much match the requested data size so that dtFabric can map...
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python
train
ranaroussi/pywallet
pywallet/utils/ethereum.py
https://github.com/ranaroussi/pywallet/blob/206ff224389c490d8798f660c9e79fe97ebb64cf/pywallet/utils/ethereum.py#L638-L664
def from_signature(message, signature): """ Attempts to create PublicKey object by deriving it from the message and signature. Args: message (bytes): The message to be verified. signature (Signature): The signature for message. The recovery_id must not be ...
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Attempts to create PublicKey object by deriving it from the message and signature. Args: message (bytes): The message to be verified. signature (Signature): The signature for message. The recovery_id must not be None! Returns: PublicKey: ...
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python
train
CI-WATER/gsshapy
gsshapy/orm/idx.py
https://github.com/CI-WATER/gsshapy/blob/00fd4af0fd65f1614d75a52fe950a04fb0867f4c/gsshapy/orm/idx.py#L137-L168
def write(self, directory, name=None, session=None, replaceParamFile=None): """ Index Map Write to File Method """ # Initiate file if name != None: filename = '%s.%s' % (name, self.fileExtension) filePath = os.path.join(directory, filename) else: ...
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Index Map Write to File Method
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python
train
bitesofcode/projexui
projexui/widgets/xnodewidget/xnodescene.py
https://github.com/bitesofcode/projexui/blob/f18a73bec84df90b034ca69b9deea118dbedfc4d/projexui/widgets/xnodewidget/xnodescene.py#L1436-L1446
def setModified( self, state = True ): """ Flags the scene as being modified based on the inputed value. :param state <bool> """ if ( state == self._modified ): return self._modified = state self.emitModifiedStateChanged()
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Flags the scene as being modified based on the inputed value. :param state <bool>
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python
train
waqasbhatti/astrobase
astrobase/services/mast.py
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/services/mast.py#L342-L448
def tic_conesearch( ra, decl, radius_arcmin=5.0, apiversion='v0', forcefetch=False, cachedir='~/.astrobase/mast-cache', verbose=True, timeout=10.0, refresh=5.0, maxtimeout=90.0, maxtries=3, jitter=5.0, raiseonfail=Fa...
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This runs a TESS Input Catalog cone search on MAST. If you use this, please cite the TIC paper (Stassun et al 2018; http://adsabs.harvard.edu/abs/2018AJ....156..102S). Also see the "living" TESS input catalog docs: https://docs.google.com/document/d/1zdiKMs4Ld4cXZ2DW4lMX-fuxAF6hPHTjqjIwGqnfjqI Al...
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python
valid
pilosus/ForgeryPy3
forgery_py/forgery/credit_card.py
https://github.com/pilosus/ForgeryPy3/blob/e15f2e59538deb4cbfceaac314f5ea897f2d5450/forgery_py/forgery/credit_card.py#L73-L107
def number(type=None, length=None, prefixes=None): """ Return a random credit card number. :param type: credit card type. Defaults to a random selection. :param length: length of the credit card number. Defaults to the length for the selected card type. :param prefixes: allowed p...
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Return a random credit card number. :param type: credit card type. Defaults to a random selection. :param length: length of the credit card number. Defaults to the length for the selected card type. :param prefixes: allowed prefixes for the card number. Defaults to p...
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python
valid
maikelboogerd/eventcore
eventcore/decorators.py
https://github.com/maikelboogerd/eventcore/blob/3675f15344d70111874e0f5e5d3305c925dd38d4/eventcore/decorators.py#L18-L36
def dispatch_event(event, subject='id'): """ Dispatch an event when the decorated method is called. :param event: the event class to instantiate and dispatch. :param subject_property: the property name to get the subject. """ def wrapper(method): def inner_wrapper(*args, **kwargs): ...
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Dispatch an event when the decorated method is called. :param event: the event class to instantiate and dispatch. :param subject_property: the property name to get the subject.
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python
train
GMadorell/abris
abris_transform/abris.py
https://github.com/GMadorell/abris/blob/0d8ab7ec506835a45fae6935d129f5d7e6937bb2/abris_transform/abris.py#L32-L40
def apply(self, data_source): """ Called with the predict data (new information). @param data_source: Either a pandas.DataFrame or a file-like object. """ dataframe = self.__get_dataframe(data_source, use_target=False) dataframe = self.__cleaner.apply(dataframe) d...
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Called with the predict data (new information). @param data_source: Either a pandas.DataFrame or a file-like object.
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python
train
blockstack/blockstack-core
blockstack/blockstackd.py
https://github.com/blockstack/blockstack-core/blob/1dcfdd39b152d29ce13e736a6a1a0981401a0505/blockstack/blockstackd.py#L2431-L2484
def genesis_block_load(module_path=None): """ Make sure the genesis block is good to go. Load and instantiate it. """ if os.environ.get('BLOCKSTACK_GENESIS_BLOCK_PATH') is not None: log.warning('Using envar-given genesis block') module_path = os.environ['BLOCKSTACK_GENESIS_BLOCK_PATH...
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Make sure the genesis block is good to go. Load and instantiate it.
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python
train
bjodah/pyodesys
pyodesys/symbolic.py
https://github.com/bjodah/pyodesys/blob/0034a6165b550d8d9808baef58678dca5a493ab7/pyodesys/symbolic.py#L466-L508
def from_other(cls, ori, **kwargs): """ Creates a new instance with an existing one as a template. Parameters ---------- ori : SymbolicSys instance \\*\\*kwargs: Keyword arguments used to create the new instance. Returns ------- A new instanc...
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Creates a new instance with an existing one as a template. Parameters ---------- ori : SymbolicSys instance \\*\\*kwargs: Keyword arguments used to create the new instance. Returns ------- A new instance of the class.
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python
train
mouse-reeve/horoscope-generator
horoscope_generator/HoroscopeGenerator.py
https://github.com/mouse-reeve/horoscope-generator/blob/01acf298116745ded5819d348c28a98a7492ccf3/horoscope_generator/HoroscopeGenerator.py#L17-L38
def get_sentence(start=None, depth=7): ''' follow the grammatical patterns to generate a random sentence ''' if not GRAMMAR: return 'Please set a GRAMMAR file' start = start if start else GRAMMAR.start() if isinstance(start, Nonterminal): productions = GRAMMAR.productions(start) ...
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follow the grammatical patterns to generate a random sentence
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python
train
square/pylink
pylink/jlink.py
https://github.com/square/pylink/blob/81dda0a191d923a8b2627c52cb778aba24d279d7/pylink/jlink.py#L3411-L3459
def num_available_breakpoints(self, arm=False, thumb=False, ram=False, flash=False, hw=False): """Returns the number of available breakpoints of the specified type. If ``arm`` is set, gets the number of available ARM breakpoint units. If ``thumb`` is set, gets the number of available THUMB brea...
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Returns the number of available breakpoints of the specified type. If ``arm`` is set, gets the number of available ARM breakpoint units. If ``thumb`` is set, gets the number of available THUMB breakpoint units. If ``ram`` is set, gets the number of available software RAM breakpoint uni...
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python
train
spyder-ide/pywinpty
winpty/ptyprocess.py
https://github.com/spyder-ide/pywinpty/blob/f4461cde9f0c53047e61e9eff7f7ec21ecbc4573/winpty/ptyprocess.py#L227-L241
def terminate(self, force=False): """This forces a child process to terminate.""" if not self.isalive(): return True self.kill(signal.SIGINT) time.sleep(self.delayafterterminate) if not self.isalive(): return True if force: self.kill(si...
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This forces a child process to terminate.
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python
train
Fire-Proof/cuepy
cuepy/cuepy.py
https://github.com/Fire-Proof/cuepy/blob/5add7d62a31589bcdc7d2103c9c482bf718556ec/cuepy/cuepy.py#L48-L58
def device_count(self): """ Find amount of CUE devices :returns: amount of CUE devices :rtype: int """ device_count = get_device_count(self.corsair_sdk) if device_count == -1: self._raise_corsair_error() return device_count
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Find amount of CUE devices :returns: amount of CUE devices :rtype: int
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python
train
ttu/ruuvitag-sensor
examples/post_to_influxdb.py
https://github.com/ttu/ruuvitag-sensor/blob/b5d1367c26844ae5875b2964c68e7b2f4e1cb082/examples/post_to_influxdb.py#L35-L63
def convert_to_influx(mac, payload): ''' Convert data into RuuviCollector naming schme and scale returns: Object to be written to InfluxDB ''' dataFormat = payload["data_format"] if ('data_format' in payload) else None fields = {} fields["temperature"] = payload["tempe...
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Convert data into RuuviCollector naming schme and scale returns: Object to be written to InfluxDB
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python
train
cuihantao/andes
andes/models/base.py
https://github.com/cuihantao/andes/blob/7067898d4f26ce7534e968b8486c4aa8fe3a511a/andes/models/base.py#L1211-L1218
def _param_to_list(self): """ Convert parameters defined in `self._param` to list :return None """ for item in self._params: self.__dict__[item] = list(self.__dict__[item])
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Convert parameters defined in `self._param` to list :return None
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python
train
codeinn/vcs
vcs/cli.py
https://github.com/codeinn/vcs/blob/e6cd94188e9c36d273411bf3adc0584ac6ab92a0/vcs/cli.py#L319-L326
def handle(self, *args, **options): """ Runs ``pre_process``, ``handle_repo`` and ``post_process`` methods, in that order. """ self.pre_process(self.repo) self.handle_repo(self.repo, *args, **options) self.post_process(self.repo, **options)
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Runs ``pre_process``, ``handle_repo`` and ``post_process`` methods, in that order.
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python
train
geronimp/graftM
graftm/unpack_sequences.py
https://github.com/geronimp/graftM/blob/c82576517290167f605fd0bc4facd009cee29f48/graftm/unpack_sequences.py#L108-L111
def basename(self): '''Return the name of the file with the '.fasta' or 'fq.gz' etc removed''' return os.path.basename(self.read_file)[:-len(self._get_extension(self.read_file))]
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Return the name of the file with the '.fasta' or 'fq.gz' etc removed
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python
train
blackecho/Deep-Learning-TensorFlow
yadlt/utils/utilities.py
https://github.com/blackecho/Deep-Learning-TensorFlow/blob/ddeb1f2848da7b7bee166ad2152b4afc46bb2086/yadlt/utils/utilities.py#L156-L170
def masking_noise(data, sess, v): """Apply masking noise to data in X. In other words a fraction v of elements of X (chosen at random) is forced to zero. :param data: array_like, Input data :param sess: TensorFlow session :param v: fraction of elements to distort, float :return: transformed...
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Apply masking noise to data in X. In other words a fraction v of elements of X (chosen at random) is forced to zero. :param data: array_like, Input data :param sess: TensorFlow session :param v: fraction of elements to distort, float :return: transformed data
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python
train
pyviz/imagen
imagen/transferfn/__init__.py
https://github.com/pyviz/imagen/blob/53c5685c880f54b42795964d8db50b02e8590e88/imagen/transferfn/__init__.py#L31-L42
def initialize(self, **kwargs): """ Transfer functions may need additional information before the supplied numpy array can be modified in place. For instance, transfer functions may have state which needs to be allocated in memory with a certain size. In other cases, the transfe...
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python
train
draperjames/qtpandas
qtpandas/views/CustomDelegates.py
https://github.com/draperjames/qtpandas/blob/64294fb69f1839e53dee5ea453337266bfaf24f4/qtpandas/views/CustomDelegates.py#L238-L248
def setModelData(self, editor, model, index): """Gets data from the editor widget and stores it in the specified model at the item index. Args: editor (QtGui.QLineEdit): editor widget. model (QAbstractItemModel): parent model. index (QModelIndex): model data index. ...
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Gets data from the editor widget and stores it in the specified model at the item index. Args: editor (QtGui.QLineEdit): editor widget. model (QAbstractItemModel): parent model. index (QModelIndex): model data index.
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python
train
klmitch/appathy
appathy/actions.py
https://github.com/klmitch/appathy/blob/a10aa7d21d38622e984a8fe106ab37114af90dc2/appathy/actions.py#L129-L162
def serializer(self, req): """ Selects and returns the serializer to use, based on the serializers declared on the action method and its extensions. The returned content type is selected based on the types available and the best match generated from the HTTP `Accept` head...
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Selects and returns the serializer to use, based on the serializers declared on the action method and its extensions. The returned content type is selected based on the types available and the best match generated from the HTTP `Accept` header. Raises `HTTPNotAcceptable` if the request ...
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python
train
ddorn/GUI
GUI/draw.py
https://github.com/ddorn/GUI/blob/e1fcb5286d24e0995f280d5180222e51895c368c/GUI/draw.py#L71-L122
def ring(surf, xy, r, width, color): """Draws a ring""" r2 = r - width x0, y0 = xy x = r2 y = 0 err = 0 # collect points of the inner circle right = {} while x >= y: right[x] = y right[y] = x right[-x] = y right[-y] = x y += 1 if er...
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Draws a ring
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python
train
briancappello/flask-unchained
flask_unchained/bundles/security/services/security_utils_service.py
https://github.com/briancappello/flask-unchained/blob/4d536cb90e2cc4829c1c05f2c74d3e22901a1399/flask_unchained/bundles/security/services/security_utils_service.py#L45-L65
def verify_password(self, user, password): """ Returns ``True`` if the password is valid for the specified user. Additionally, the hashed password in the database is updated if the hashing algorithm happens to have changed. :param user: The user to verify against :param...
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Returns ``True`` if the password is valid for the specified user. Additionally, the hashed password in the database is updated if the hashing algorithm happens to have changed. :param user: The user to verify against :param password: The plaintext password to verify
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python
train
ArchiveTeam/wpull
wpull/protocol/http/web.py
https://github.com/ArchiveTeam/wpull/blob/ddf051aa3322479325ba20aa778cb2cb97606bf5/wpull/protocol/http/web.py#L133-L152
def _process_response(self, response: Response): '''Handle the response and update the internal state.''' _logger.debug('Handling response') self._redirect_tracker.load(response) if self._redirect_tracker.is_redirect(): self._process_redirect() self._loop_type =...
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Handle the response and update the internal state.
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python
train
aichaos/rivescript-python
rivescript/rivescript.py
https://github.com/aichaos/rivescript-python/blob/b55c820cf02a194605fd66af1f070e239f84ed31/rivescript/rivescript.py#L521-L555
def sort_replies(self, thats=False): """Sort the loaded triggers in memory. After you have finished loading your RiveScript code, call this method to populate the various internal sort buffers. This is absolutely necessary for reply matching to work efficiently! """ # (R...
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Sort the loaded triggers in memory. After you have finished loading your RiveScript code, call this method to populate the various internal sort buffers. This is absolutely necessary for reply matching to work efficiently!
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python
train
wright-group/WrightTools
WrightTools/kit/_list.py
https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_list.py#L17-L52
def flatten_list(items, seqtypes=(list, tuple), in_place=True): """Flatten an irregular sequence. Works generally but may be slower than it could be if you can make assumptions about your list. `Source`__ __ https://stackoverflow.com/a/10824086 Parameters ---------- items : iterable ...
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Flatten an irregular sequence. Works generally but may be slower than it could be if you can make assumptions about your list. `Source`__ __ https://stackoverflow.com/a/10824086 Parameters ---------- items : iterable The irregular sequence to flatten. seqtypes : iterable of t...
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python
train
Karaage-Cluster/karaage
karaage/datastores/__init__.py
https://github.com/Karaage-Cluster/karaage/blob/2f4c8b4e2d728b3fcbb151160c49000f1c04f5c9/karaage/datastores/__init__.py#L251-L258
def get_institute_details(institute): """ Get details for this user. """ result = [] for datastore in _get_datastores(): value = datastore.get_institute_details(institute) value['datastore'] = datastore.config['DESCRIPTION'] result.append(value) return result
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Get details for this user.
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python
train
blockstack/blockstack-core
blockstack/lib/operations/register.py
https://github.com/blockstack/blockstack-core/blob/1dcfdd39b152d29ce13e736a6a1a0981401a0505/blockstack/lib/operations/register.py#L999-L1091
def parse(bin_payload, block_height): """ Interpret a block's nulldata back into a name. The first three bytes (2 magic + 1 opcode) will not be present in bin_payload. The name will be directly represented by the bytes given. This works for registrations and renewals. Record format (pre...
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Interpret a block's nulldata back into a name. The first three bytes (2 magic + 1 opcode) will not be present in bin_payload. The name will be directly represented by the bytes given. This works for registrations and renewals. Record format (pre F-day 2017): 0 2 3 ...
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python
train
consbio/gis-metadata-parser
gis_metadata/arcgis_metadata_parser.py
https://github.com/consbio/gis-metadata-parser/blob/59eefb2e51cd4d8cc3e94623a2167499ca9ef70f/gis_metadata/arcgis_metadata_parser.py#L407-L440
def _update_report_item(self, **update_props): """ Update the text for each element at the configured path if attribute matches """ tree_to_update = update_props['tree_to_update'] prop = update_props['prop'] values = wrap_value(update_props['values']) xroot = self._get_xroot_for...
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Update the text for each element at the configured path if attribute matches
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python
train
sethmlarson/virtualbox-python
virtualbox/library.py
https://github.com/sethmlarson/virtualbox-python/blob/706c8e3f6e3aee17eb06458e73cbb4bc2d37878b/virtualbox/library.py#L19165-L19222
def directory_create_temp(self, template_name, mode, path, secure): """Creates a temporary directory in the guest. in template_name of type str Template for the name of the directory to create. This must contain at least one 'X' character. The first group of consecutive ...
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Creates a temporary directory in the guest. in template_name of type str Template for the name of the directory to create. This must contain at least one 'X' character. The first group of consecutive 'X' characters in the template will be replaced by a random alp...
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python
train
ThreatConnect-Inc/tcex
tcex/tcex_resources.py
https://github.com/ThreatConnect-Inc/tcex/blob/dd4d7a1ef723af1561687120191886b9a2fd4b47/tcex/tcex_resources.py#L312-L362
def association_custom(self, association_name, association_resource=None): """Custom Indicator association for this resource with resource value. **Example Endpoints URI's** +--------+--------------------------------------------------------------------------+ | HTTP | API Endpoint UR...
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Custom Indicator association for this resource with resource value. **Example Endpoints URI's** +--------+--------------------------------------------------------------------------+ | HTTP | API Endpoint URI's | +========+========...
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python
train
spyder-ide/spyder
spyder/app/mainwindow.py
https://github.com/spyder-ide/spyder/blob/f76836ce1b924bcc4efd3f74f2960d26a4e528e0/spyder/app/mainwindow.py#L192-L210
def get_python_doc_path(): """ Return Python documentation path (Windows: return the PythonXX.chm path if available) """ if os.name == 'nt': doc_path = osp.join(sys.prefix, "Doc") if not osp.isdir(doc_path): return python_chm = [path for path in os.listdi...
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Return Python documentation path (Windows: return the PythonXX.chm path if available)
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python
train
econ-ark/HARK
HARK/interpolation.py
https://github.com/econ-ark/HARK/blob/3d184153a189e618a87c9540df1cd12044039cc5/HARK/interpolation.py#L2017-L2037
def derivativeY(self,x,y): ''' Evaluate the first derivative with respect to y of the function at given state space points. Parameters ---------- x : np.array First input values. y : np.array Second input values; should be of same shape ...
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Evaluate the first derivative with respect to y of the function at given state space points. Parameters ---------- x : np.array First input values. y : np.array Second input values; should be of same shape as x. Returns ------- ...
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python
train
Pylons/hupper
src/hupper/worker.py
https://github.com/Pylons/hupper/blob/197173c09e775b66c148468b6299c571e736c381/src/hupper/worker.py#L50-L60
def search_traceback(self, tb): """ Inspect a traceback for new paths to add to our path set.""" new_paths = [] with self.lock: for filename, line, funcname, txt in traceback.extract_tb(tb): path = os.path.abspath(filename) if path not in self.paths: ...
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Inspect a traceback for new paths to add to our path set.
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python
train
DistrictDataLabs/yellowbrick
yellowbrick/classifier/rocauc.py
https://github.com/DistrictDataLabs/yellowbrick/blob/59b67236a3862c73363e8edad7cd86da5b69e3b2/yellowbrick/classifier/rocauc.py#L399-L503
def roc_auc(model, X, y=None, ax=None, **kwargs): """ROCAUC Quick method: Receiver Operating Characteristic (ROC) curves are a measure of a classifier's predictive quality that compares and visualizes the tradeoff between the models' sensitivity and specificity. The ROC curve displays the true posi...
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ROCAUC Quick method: Receiver Operating Characteristic (ROC) curves are a measure of a classifier's predictive quality that compares and visualizes the tradeoff between the models' sensitivity and specificity. The ROC curve displays the true positive rate on the Y axis and the false positive rate on th...
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python
train
empymod/empymod
empymod/transform.py
https://github.com/empymod/empymod/blob/4a78ca4191ed4b4d42d019ce715a9a3889dba1bc/empymod/transform.py#L766-L806
def fft(fEM, time, freq, ftarg): r"""Fourier Transform using the Fast Fourier Transform. The function is called from one of the modelling routines in :mod:`model`. Consult these modelling routines for a description of the input and output parameters. Returns ------- tEM : array Ret...
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r"""Fourier Transform using the Fast Fourier Transform. The function is called from one of the modelling routines in :mod:`model`. Consult these modelling routines for a description of the input and output parameters. Returns ------- tEM : array Returns time-domain EM response of ``fEM...
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python
train
pkgw/pwkit
pwkit/numutil.py
https://github.com/pkgw/pwkit/blob/d40957a1c3d2ea34e7ceac2267ee9635135f2793/pwkit/numutil.py#L423-L470
def dfsmooth (window, df, ucol, k=None): """Smooth a :class:`pandas.DataFrame` according to a window, weighting based on uncertainties. Arguments are: window The smoothing window. df The :class:`pandas.DataFrame`. ucol The name of the column in *df* that contains the uncertai...
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Smooth a :class:`pandas.DataFrame` according to a window, weighting based on uncertainties. Arguments are: window The smoothing window. df The :class:`pandas.DataFrame`. ucol The name of the column in *df* that contains the uncertainties to weight by. k = None If ...
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python
train
data-8/datascience
datascience/maps.py
https://github.com/data-8/datascience/blob/4cee38266903ca169cea4a53b8cc39502d85c464/datascience/maps.py#L370-L373
def _set_folium_map(self): """A map containing only the feature.""" m = Map(features=[self], width=self._width, height=self._height) self._folium_map = m.draw()
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A map containing only the feature.
[ "A", "map", "containing", "only", "the", "feature", "." ]
python
train
pudo-attic/scrapekit
scrapekit/tasks.py
https://github.com/pudo-attic/scrapekit/blob/cfd258120922fcd571430cdf00ba50f3cf18dc15/scrapekit/tasks.py#L163-L174
def chain(self, other_task): """ Add a chain listener to the execution of this task. Whenever an item has been processed by the task, the registered listener task will be queued to be executed with the output of this task. Can also be written as:: pipeline = task1 > task2 ...
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Add a chain listener to the execution of this task. Whenever an item has been processed by the task, the registered listener task will be queued to be executed with the output of this task. Can also be written as:: pipeline = task1 > task2
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python
train
mozilla/crontabber
crontabber/app.py
https://github.com/mozilla/crontabber/blob/b510be349e71f165c1a9506db95bda0b88728f8b/crontabber/app.py#L876-L921
def nagios(self, stream=sys.stdout): """ return 0 (OK) if there are no errors in the state. return 1 (WARNING) if a backfill app only has 1 error. return 2 (CRITICAL) if a backfill app has > 1 error. return 2 (CRITICAL) if a non-backfill app has 1 error. """ warni...
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return 0 (OK) if there are no errors in the state. return 1 (WARNING) if a backfill app only has 1 error. return 2 (CRITICAL) if a backfill app has > 1 error. return 2 (CRITICAL) if a non-backfill app has 1 error.
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python
train
BeyondTheClouds/enoslib
enoslib/api.py
https://github.com/BeyondTheClouds/enoslib/blob/fb00be58e56a7848cfe482187d659744919fe2f7/enoslib/api.py#L45-L96
def _load_defaults(inventory_path=None, roles=None, extra_vars=None, tags=None, basedir=False): """Load common defaults data structures. For factorization purpose.""" extra_vars = extra_vars or {} tags = tags or [] loader = DataLoader() if basedir: loader.set_basedir...
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Load common defaults data structures. For factorization purpose.
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python
train
mikedh/trimesh
trimesh/path/path.py
https://github.com/mikedh/trimesh/blob/25e059bf6d4caa74f62ffd58ce4f61a90ee4e518/trimesh/path/path.py#L954-L982
def rasterize(self, pitch, origin, resolution=None, fill=True, width=None, **kwargs): """ Rasterize a Path2D object into a boolean image ("mode 1"). Parameters ------------ ...
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Rasterize a Path2D object into a boolean image ("mode 1"). Parameters ------------ pitch: float, length in model space of a pixel edge origin: (2,) float, origin position in model space resolution: (2,) int, resolution in pixel space fill: bool, if True wi...
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python
train
saltstack/salt
salt/proxy/esxi.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/proxy/esxi.py#L508-L531
def find_credentials(host): ''' Cycle through all the possible credentials and return the first one that works. ''' user_names = [__pillar__['proxy'].get('username', 'root')] passwords = __pillar__['proxy']['passwords'] for user in user_names: for password in passwords: t...
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Cycle through all the possible credentials and return the first one that works.
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python
train
MisterY/asset-allocation
asset_allocation/loader.py
https://github.com/MisterY/asset-allocation/blob/72239aa20762cda67c091f27b86e65d61bf3b613/asset_allocation/loader.py#L161-L180
def __load_child_classes(self, ac: AssetClass): """ Loads child classes/stocks """ # load child classes for ac db = self.__get_session() entities = ( db.query(dal.AssetClass) .filter(dal.AssetClass.parentid == ac.id) .order_by(dal.AssetClass.sortorder)...
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Loads child classes/stocks
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python
train
foremast/foremast
src/foremast/autoscaling_policy/create_policy.py
https://github.com/foremast/foremast/blob/fb70f29b8ce532f061685a17d120486e47b215ba/src/foremast/autoscaling_policy/create_policy.py#L129-L153
def delete_existing_policy(self, scaling_policy, server_group): """Given a scaling_policy and server_group, deletes the existing scaling_policy. Scaling policies need to be deleted instead of upserted for consistency. Args: scaling_policy (json): the scaling_policy json from Spinnak...
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Given a scaling_policy and server_group, deletes the existing scaling_policy. Scaling policies need to be deleted instead of upserted for consistency. Args: scaling_policy (json): the scaling_policy json from Spinnaker that should be deleted server_group (str): the affected serv...
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python
train
splunk/splunk-sdk-python
examples/analytics/bottle.py
https://github.com/splunk/splunk-sdk-python/blob/a245a4eeb93b3621730418008e31715912bcdcd8/examples/analytics/bottle.py#L1350-L1355
def _ekey(self, key): ''' Translate header field name to CGI/WSGI environ key. ''' key = key.replace('-','_').upper() if key in self.cgikeys: return key return 'HTTP_' + key
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Translate header field name to CGI/WSGI environ key.
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python
train
Fantomas42/django-blog-zinnia
zinnia/views/mixins/templates.py
https://github.com/Fantomas42/django-blog-zinnia/blob/b4949304b104a8e1a7a7a0773cbfd024313c3a15/zinnia/views/mixins/templates.py#L137-L148
def get_archive_part_value(self, part): """Return archive part for today""" parts_dict = {'year': '%Y', 'month': self.month_format, 'week': self.week_format, 'day': '%d'} if self.today is None: today = timezone.now() ...
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Return archive part for today
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python
train
secdev/scapy
scapy/layers/tls/crypto/cipher_aead.py
https://github.com/secdev/scapy/blob/3ffe757c184017dd46464593a8f80f85abc1e79a/scapy/layers/tls/crypto/cipher_aead.py#L335-L370
def auth_decrypt(self, A, C, seq_num): """ Decrypt the data and verify the authentication code (in this order). Note that TLS 1.3 is not supposed to use any additional data A. If the verification fails, an AEADTagError is raised. It is the user's responsibility to catch it if dee...
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Decrypt the data and verify the authentication code (in this order). Note that TLS 1.3 is not supposed to use any additional data A. If the verification fails, an AEADTagError is raised. It is the user's responsibility to catch it if deemed useful. If we lack the key, we raise a CipherEr...
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python
train
seung-lab/cloud-volume
cloudvolume/lib.py
https://github.com/seung-lab/cloud-volume/blob/d2fd4500333f1bc3cd3e3919a8b649cec5d8e214/cloudvolume/lib.py#L740-L790
def generate_slices(slices, minsize, maxsize, bounded=True): """Assisting function for __getitem__. e.g. vol[:,:,:,:]""" if isinstance(slices, integer_types) or isinstance(slices, floating_types): slices = [ slice(int(slices), int(slices)+1, 1) ] elif type(slices) == slice: slices = [ slices ] elif sli...
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Assisting function for __getitem__. e.g. vol[:,:,:,:]
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python
train
saltstack/salt
salt/cli/support/__init__.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/cli/support/__init__.py#L15-L22
def _render_profile(path, caller, runner): ''' Render profile as Jinja2. :param path: :return: ''' env = jinja2.Environment(loader=jinja2.FileSystemLoader(os.path.dirname(path)), trim_blocks=False) return env.get_template(os.path.basename(path)).render(salt=caller, runners=runner).strip()
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Render profile as Jinja2. :param path: :return:
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python
train
ArchiveTeam/wpull
wpull/document/html.py
https://github.com/ArchiveTeam/wpull/blob/ddf051aa3322479325ba20aa778cb2cb97606bf5/wpull/document/html.py#L214-L226
def is_file(cls, file): '''Return whether the file is likely to be HTML.''' peeked_data = wpull.string.printable_bytes( wpull.util.peek_file(file)).lower() if b'<!doctype html' in peeked_data \ or b'<head' in peeked_data \ or b'<title' in peeked_data \ ...
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Return whether the file is likely to be HTML.
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python
train
remram44/rpaths
rpaths.py
https://github.com/remram44/rpaths/blob/e4ff55d985c4d643d9fd214539d45af39ae5a7cd/rpaths.py#L937-L940
def move(self, target): """Recursively moves a file or directory to the given target location. """ shutil.move(self.path, self._to_backend(target))
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Recursively moves a file or directory to the given target location.
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python
train
taskcluster/taskcluster-client.py
taskcluster/aio/hooks.py
https://github.com/taskcluster/taskcluster-client.py/blob/bcc95217f8bf80bed2ae5885a19fa0035da7ebc9/taskcluster/aio/hooks.py#L190-L202
async def resetTriggerToken(self, *args, **kwargs): """ Reset a trigger token Reset the token for triggering a given hook. This invalidates token that may have been issued via getTriggerToken with a new token. This method gives output: ``v1/trigger-token-response.json#`` ...
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Reset a trigger token Reset the token for triggering a given hook. This invalidates token that may have been issued via getTriggerToken with a new token. This method gives output: ``v1/trigger-token-response.json#`` This method is ``stable``
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python
train
chop-dbhi/varify-data-warehouse
vdw/raw/utils/stream.py
https://github.com/chop-dbhi/varify-data-warehouse/blob/1600ee1bc5fae6c68fd03b23624467298570cca8/vdw/raw/utils/stream.py#L119-L137
def read(self, size=-1): """Read `size` bytes from the reader relative to the parsed output. This is generally acceptable in practice since VCF lines are condensed, but if the output line <<< record, this means the actual memory used will be much greater than `size`. """ ...
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Read `size` bytes from the reader relative to the parsed output. This is generally acceptable in practice since VCF lines are condensed, but if the output line <<< record, this means the actual memory used will be much greater than `size`.
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python
train
awslabs/aws-sam-cli
samcli/commands/local/lib/sam_function_provider.py
https://github.com/awslabs/aws-sam-cli/blob/c05af5e7378c6f05f7d82ad3f0bca17204177db6/samcli/commands/local/lib/sam_function_provider.py#L81-L108
def _extract_functions(resources): """ Extracts and returns function information from the given dictionary of SAM/CloudFormation resources. This method supports functions defined with AWS::Serverless::Function and AWS::Lambda::Function :param dict resources: Dictionary of SAM/CloudForma...
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Extracts and returns function information from the given dictionary of SAM/CloudFormation resources. This method supports functions defined with AWS::Serverless::Function and AWS::Lambda::Function :param dict resources: Dictionary of SAM/CloudFormation resources :return dict(string : samcli.com...
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python
train
geophysics-ubonn/crtomo_tools
lib/crtomo/tdManager.py
https://github.com/geophysics-ubonn/crtomo_tools/blob/27c3e21a557f8df1c12455b96c4c2e00e08a5b4a/lib/crtomo/tdManager.py#L577-L589
def get_sensitivity(self, config_nr): """return a sensitivity, as well as corresponding metadata, for a given measurement configuration. Indices start at zero. """ if self.assignments['sensitivities'] is None: self._check_state() if self.can_model: ...
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return a sensitivity, as well as corresponding metadata, for a given measurement configuration. Indices start at zero.
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python
train
geophysics-ubonn/crtomo_tools
src/td_correct_temperature.py
https://github.com/geophysics-ubonn/crtomo_tools/blob/27c3e21a557f8df1c12455b96c4c2e00e08a5b4a/src/td_correct_temperature.py#L27-L89
def handle_options(): '''Handle options. ''' parser = OptionParser() parser.set_defaults(add=False) parser.set_defaults(rhofile=False) parser.set_defaults(aniso=False) parser.add_option("-m", dest="m", type="float", help="Use...
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Handle options.
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python
train
ultrabug/py3status
py3status/modules/player_control.py
https://github.com/ultrabug/py3status/blob/4c105f1b44f7384ca4f7da5f821a47e468c7dee2/py3status/modules/player_control.py#L137-L142
def _change_volume(self, increase): """Change volume using amixer """ sign = "+" if increase else "-" delta = "%d%%%s" % (self.volume_tick, sign) self._run(["amixer", "-q", "sset", "Master", delta])
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Change volume using amixer
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python
train
hayd/pep8radius
pep8radius/radius.py
https://github.com/hayd/pep8radius/blob/0c1d14835d390f7feeb602f35a768e52ce306a0a/pep8radius/radius.py#L265-L270
def _maybe_print(something_to_print, end=None, min_=1, max_=99, verbose=0): """Print if verbose is within min_ and max_.""" if min_ <= verbose <= max_: import sys print(something_to_print, end=end) sys.stdout.flush()
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Print if verbose is within min_ and max_.
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python
train
brainiak/brainiak
brainiak/utils/utils.py
https://github.com/brainiak/brainiak/blob/408f12dec2ff56559a26873a848a09e4c8facfeb/brainiak/utils/utils.py#L342-L487
def gen_design(stimtime_files, scan_duration, TR, style='FSL', temp_res=0.01, hrf_para={'response_delay': 6, 'undershoot_delay': 12, 'response_dispersion': 0.9, 'undershoot_dispersion': 0.9, 'undershoot_scale': 0.03...
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Generate design matrix based on a list of names of stimulus timing files. The function will read each file, and generate a numpy array of size [time_points \\* condition], where time_points equals duration / TR, and condition is the size of stimtime_filenames. Each column is the hypothet...
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python
train
PredixDev/predixpy
predix/data/timeseries.py
https://github.com/PredixDev/predixpy/blob/a0cb34cf40f716229351bb6d90d6ecace958c81f/predix/data/timeseries.py#L85-L95
def _get_query_zone_id(self): """ Returns the ZoneId for performing queries of a Predix Time Series instance from environment inspection. """ if 'VCAP_SERVICES' in os.environ: services = json.loads(os.getenv('VCAP_SERVICES')) predix_timeseries = services['...
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Returns the ZoneId for performing queries of a Predix Time Series instance from environment inspection.
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python
train
higlass/higlass-python
higlass/server.py
https://github.com/higlass/higlass-python/blob/0a5bf2759cc0020844aefbf0df4f9e8f9137a0b7/higlass/server.py#L339-L386
def start(self, log_file="/tmp/hgserver.log", log_level=logging.INFO): """ Start a lightweight higlass server. Parameters ---------- log_file: string Where to place diagnostic log files log_level: logging.* What level to log at """ ...
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Start a lightweight higlass server. Parameters ---------- log_file: string Where to place diagnostic log files log_level: logging.* What level to log at
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python
train
bitesofcode/projexui
projexui/widgets/xrichtextedit/xrichtextedit.py
https://github.com/bitesofcode/projexui/blob/f18a73bec84df90b034ca69b9deea118dbedfc4d/projexui/widgets/xrichtextedit/xrichtextedit.py#L188-L196
def blockSignals(self, state): """ Propagates the block signals for this editor down to the text editor. :param state | <bool> """ super(XRichTextEdit, self).blockSignals(state) self.uiEditTXT.blockSignals(state)
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Propagates the block signals for this editor down to the text editor. :param state | <bool>
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python
train
apache/incubator-mxnet
python/mxnet/autograd.py
https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/python/mxnet/autograd.py#L223-L240
def _parse_head(heads, head_grads): """parse head gradient for backward and grad.""" if isinstance(heads, NDArray): heads = [heads] if isinstance(head_grads, NDArray): head_grads = [head_grads] head_handles = c_handle_array(heads) if head_grads is None: hgrad_handles = ctyp...
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parse head gradient for backward and grad.
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python
train
llllllllll/codetransformer
codetransformer/transformers/literals.py
https://github.com/llllllllll/codetransformer/blob/c5f551e915df45adc7da7e0b1b635f0cc6a1bb27/codetransformer/transformers/literals.py#L237-L268
def overloaded_constants(type_, __doc__=None): """A factory for transformers that apply functions to literals. Parameters ---------- type_ : type The type to overload. __doc__ : str, optional Docstring for the generated transformer. Returns ------- transformer : subclas...
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A factory for transformers that apply functions to literals. Parameters ---------- type_ : type The type to overload. __doc__ : str, optional Docstring for the generated transformer. Returns ------- transformer : subclass of CodeTransformer A new code transformer cl...
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python
train
swistakm/graceful
src/graceful/validators.py
https://github.com/swistakm/graceful/blob/d4678cb6349a5c843a5e58002fc80140821609e4/src/graceful/validators.py#L31-L45
def max_validator(max_value): """Return validator function that ensures upper bound of a number. Result validation function will validate the internal value of resource instance field with the ``value >= min_value`` check. Args: max_value: maximum value for new validator """ def valid...
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Return validator function that ensures upper bound of a number. Result validation function will validate the internal value of resource instance field with the ``value >= min_value`` check. Args: max_value: maximum value for new validator
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python
train
tensorflow/tensor2tensor
tensor2tensor/data_generators/allen_brain.py
https://github.com/tensorflow/tensor2tensor/blob/272500b6efe353aeb638d2745ed56e519462ca31/tensor2tensor/data_generators/allen_brain.py#L81-L121
def _get_case_file_paths(tmp_dir, case, training_fraction=0.95): """Obtain a list of image paths corresponding to training or eval case. Args: tmp_dir: str, the root path to which raw images were written, at the top level having meta/ and raw/ subdirs. case: bool, whether obtaining file paths for tra...
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Obtain a list of image paths corresponding to training or eval case. Args: tmp_dir: str, the root path to which raw images were written, at the top level having meta/ and raw/ subdirs. case: bool, whether obtaining file paths for training (true) or eval (false). training_fraction: float, the ...
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python
train
aws/aws-dynamodb-encryption-python
src/dynamodb_encryption_sdk/encrypted/item.py
https://github.com/aws/aws-dynamodb-encryption-python/blob/8de3bbe13df39c59b21bf431010f7acfcf629a2f/src/dynamodb_encryption_sdk/encrypted/item.py#L122-L147
def encrypt_python_item(item, crypto_config): # type: (dynamodb_types.ITEM, CryptoConfig) -> dynamodb_types.ITEM """Encrypt a dictionary for DynamoDB. >>> from dynamodb_encryption_sdk.encrypted.item import encrypt_python_item >>> plaintext_item = { ... 'some': 'data', ... 'more': 5 ...
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Encrypt a dictionary for DynamoDB. >>> from dynamodb_encryption_sdk.encrypted.item import encrypt_python_item >>> plaintext_item = { ... 'some': 'data', ... 'more': 5 ... } >>> encrypted_item = encrypt_python_item( ... item=plaintext_item, ... crypto_config=my_crypto_con...
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python
train
pybel/pybel
src/pybel/parser/parse_metadata.py
https://github.com/pybel/pybel/blob/c8a7a1bdae4c475fa2a8c77f3a9a5f6d79556ca0/src/pybel/parser/parse_metadata.py#L200-L206
def raise_for_redefined_annotation(self, line: str, position: int, annotation: str) -> None: """Raise an exception if the given annotation is already defined. :raises: RedefinedAnnotationError """ if self.disallow_redefinition and self.has_annotation(annotation): raise Redef...
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Raise an exception if the given annotation is already defined. :raises: RedefinedAnnotationError
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python
train
fboender/ansible-cmdb
lib/mako/util.py
https://github.com/fboender/ansible-cmdb/blob/ebd960ac10684e8c9ec2b12751bba2c4c9504ab7/lib/mako/util.py#L265-L338
def restore__ast(_ast): """Attempt to restore the required classes to the _ast module if it appears to be missing them """ if hasattr(_ast, 'AST'): return _ast.PyCF_ONLY_AST = 2 << 9 m = compile("""\ def foo(): pass class Bar(object): pass if False: pass baz = 'mako' 1 + 2 - 3 * 4 / 5 6 ...
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Attempt to restore the required classes to the _ast module if it appears to be missing them
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python
train
graphql-python/graphql-core
graphql/utils/suggestion_list.py
https://github.com/graphql-python/graphql-core/blob/d8e9d3abe7c209eb2f51cf001402783bfd480596/graphql/utils/suggestion_list.py#L23-L52
def lexical_distance(a, b): """ Computes the lexical distance between strings A and B. The "distance" between two strings is given by counting the minimum number of edits needed to transform string A into string B. An edit can be an insertion, deletion, or substitution of a single character, or ...
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Computes the lexical distance between strings A and B. The "distance" between two strings is given by counting the minimum number of edits needed to transform string A into string B. An edit can be an insertion, deletion, or substitution of a single character, or a swap of two adjacent characters. ...
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python
train
chaoss/grimoirelab-cereslib
cereslib/enrich/enrich.py
https://github.com/chaoss/grimoirelab-cereslib/blob/5110e6ca490a4f24bec3124286ebf51fd4e08bdd/cereslib/enrich/enrich.py#L489-L506
def enrich(self, columns): """ This method convert to utf-8 the provided columns :param columns: list of columns to convert to :type columns: list of strings :return: original dataframe with converted strings :rtype: pandas.DataFrame """ for column in columns: ...
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This method convert to utf-8 the provided columns :param columns: list of columns to convert to :type columns: list of strings :return: original dataframe with converted strings :rtype: pandas.DataFrame
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python
train
pyblish/pyblish-houdini
pyblish_houdini/lib.py
https://github.com/pyblish/pyblish-houdini/blob/661b08696f04b4c5d8b03aa0c75cba3ca72f1e8d/pyblish_houdini/lib.py#L20-L38
def setup(console=False, port=None): """Setup integration Register plug-ins and integrate into the host Arguments: console (bool): DEPRECATED port (int, optional): DEPRECATED """ if self._has_been_setup: teardown() register_plugins() register_host() self._ha...
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Setup integration Register plug-ins and integrate into the host Arguments: console (bool): DEPRECATED port (int, optional): DEPRECATED
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python
train
d0c-s4vage/pfp
pfp/fields.py
https://github.com/d0c-s4vage/pfp/blob/32f2d34fdec1c70019fa83c7006d5e3be0f92fcd/pfp/fields.py#L247-L268
def _pfp__process_metadata(self): """Process the metadata once the entire struct has been declared. """ if self._pfp__metadata_processor is None: return metadata_info = self._pfp__metadata_processor() if isinstance(metadata_info, list): for metada...
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Process the metadata once the entire struct has been declared.
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python
train
devassistant/devassistant
devassistant/gui/main_window.py
https://github.com/devassistant/devassistant/blob/2dbfeaa666a64127263664d18969c55d19ecc83e/devassistant/gui/main_window.py#L110-L115
def tooltip_queries(self, item, x_coord, y_coord, key_mode, tooltip, text): """ The function is used for setting tooltip on menus and submenus """ tooltip.set_text(text) return True
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python
train
inasafe/inasafe
safe/metadata35/impact_layer_metadata.py
https://github.com/inasafe/inasafe/blob/831d60abba919f6d481dc94a8d988cc205130724/safe/metadata35/impact_layer_metadata.py#L312-L339
def _read_provenance_from_xml(self, root): """ read metadata provenance from xml. :param root: container in which we search :type root: ElementTree.Element """ path = self._special_properties['provenance'] provenance = root.find(path, XML_NS) for step in ...
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read metadata provenance from xml. :param root: container in which we search :type root: ElementTree.Element
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python
train