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apple/turicreate
src/unity/python/turicreate/extensions.py
https://github.com/apple/turicreate/blob/74514c3f99e25b46f22c6e02977fe3da69221c2e/src/unity/python/turicreate/extensions.py#L654-L734
def _build_native_function_call(fn): """ If fn can be interpreted and handled as a native function: i.e. fn is one of the extensions, or fn is a simple lambda closure using one of the extensions. fn = tc.extensions.add fn = lambda x: tc.extensions.add(5) Then, this returns a closure ...
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If fn can be interpreted and handled as a native function: i.e. fn is one of the extensions, or fn is a simple lambda closure using one of the extensions. fn = tc.extensions.add fn = lambda x: tc.extensions.add(5) Then, this returns a closure object, which describes the function call whi...
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python
train
inveniosoftware/invenio-webhooks
invenio_webhooks/models.py
https://github.com/inveniosoftware/invenio-webhooks/blob/f407cb2245464543ee474a81189fb9d3978bdde5/invenio_webhooks/models.py#L181-L189
def status(self, event): """Return a tuple with current processing status code and message.""" result = AsyncResult(str(event.id)) return ( self.CELERY_STATES_TO_HTTP.get(result.state), result.info.get('message') if result.state in self.CELERY_RESULT_INFO_FOR ...
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Return a tuple with current processing status code and message.
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python
train
uchicago-cs/deepdish
deepdish/image.py
https://github.com/uchicago-cs/deepdish/blob/01af93621fe082a3972fe53ba7375388c02b0085/deepdish/image.py#L176-L194
def save(path, im): """ Saves an image to file. If the image is type float, it will assume to have values in [0, 1]. Parameters ---------- path : str Path to which the image will be saved. im : ndarray (image) Image. """ from PIL import Image if im.dtype == np.u...
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Saves an image to file. If the image is type float, it will assume to have values in [0, 1]. Parameters ---------- path : str Path to which the image will be saved. im : ndarray (image) Image.
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python
train
ckoepp/TwitterSearch
TwitterSearch/TwitterSearch.py
https://github.com/ckoepp/TwitterSearch/blob/627b9f519d49faf6b83859717f9082b3b2622aaf/TwitterSearch/TwitterSearch.py#L309-L325
def search_next_results(self): """ Triggers the search for more results using the Twitter API. \ Raises exception if no further results can be found. \ See `Advanced usage <advanced_usage.html>`_ for example :returns: ``True`` if there are more results available \ within the Twi...
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Triggers the search for more results using the Twitter API. \ Raises exception if no further results can be found. \ See `Advanced usage <advanced_usage.html>`_ for example :returns: ``True`` if there are more results available \ within the Twitter Search API :raises: TwitterSea...
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python
train
portantier/habu
habu/cli/cmd_ping.py
https://github.com/portantier/habu/blob/87091e389dc6332fe1b82830c22b2eefc55816f2/habu/cli/cmd_ping.py#L20-L74
def cmd_ping(ip, interface, count, timeout, wait, verbose): """The classic ping tool that send ICMP echo requests. \b # habu.ping 8.8.8.8 IP / ICMP 8.8.8.8 > 192.168.0.5 echo-reply 0 / Padding IP / ICMP 8.8.8.8 > 192.168.0.5 echo-reply 0 / Padding IP / ICMP 8.8.8.8 > 192.168.0.5 echo-reply 0 / ...
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The classic ping tool that send ICMP echo requests. \b # habu.ping 8.8.8.8 IP / ICMP 8.8.8.8 > 192.168.0.5 echo-reply 0 / Padding IP / ICMP 8.8.8.8 > 192.168.0.5 echo-reply 0 / Padding IP / ICMP 8.8.8.8 > 192.168.0.5 echo-reply 0 / Padding IP / ICMP 8.8.8.8 > 192.168.0.5 echo-reply 0 / Padding
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python
train
ampl/amplpy
amplpy/ampl.py
https://github.com/ampl/amplpy/blob/39df6954049a11a8f666aed26853259b4687099a/amplpy/ampl.py#L326-L335
def isBusy(self): """ Returns true if the underlying engine is doing an async operation. """ # return self._impl.isBusy() if self._lock.acquire(False): self._lock.release() return False else: return True
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Returns true if the underlying engine is doing an async operation.
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python
train
wolverdude/GenSON
genson/schema/builder.py
https://github.com/wolverdude/GenSON/blob/76552d23cf9202e8e7c262cb018eb3cb3df686b9/genson/schema/builder.py#L33-L56
def add_schema(self, schema): """ Merge in a JSON schema. This can be a ``dict`` or another ``SchemaBuilder`` :param schema: a JSON Schema .. note:: There is no schema validation. If you pass in a bad schema, you might get back a bad schema. """ ...
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Merge in a JSON schema. This can be a ``dict`` or another ``SchemaBuilder`` :param schema: a JSON Schema .. note:: There is no schema validation. If you pass in a bad schema, you might get back a bad schema.
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python
train
AndrewAnnex/SpiceyPy
getspice.py
https://github.com/AndrewAnnex/SpiceyPy/blob/fc20a9b9de68b58eed5b332f0c051fb343a6e335/getspice.py#L153-L180
def _distribution_info(self): """Creates the distribution name and the expected extension for the CSPICE package and returns it. :return (distribution, extension) tuple where distribution is the best guess from the strings available within the platform_urls list ...
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Creates the distribution name and the expected extension for the CSPICE package and returns it. :return (distribution, extension) tuple where distribution is the best guess from the strings available within the platform_urls list of strings, and extension is either "zip"...
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python
train
aestrivex/bctpy
bct/algorithms/motifs.py
https://github.com/aestrivex/bctpy/blob/4cb0e759eb4a038750b07e23bd29958c400684b8/bct/algorithms/motifs.py#L744-L843
def motif4struct_wei(W): ''' Structural motifs are patterns of local connectivity. Motif frequency is the frequency of occurrence of motifs around a node. Motif intensity and coherence are weighted generalizations of motif frequency. Parameters ---------- W : NxN np.ndarray weighted...
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Structural motifs are patterns of local connectivity. Motif frequency is the frequency of occurrence of motifs around a node. Motif intensity and coherence are weighted generalizations of motif frequency. Parameters ---------- W : NxN np.ndarray weighted directed connection matrix (all weig...
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python
train
django-extensions/django-extensions
django_extensions/compat.py
https://github.com/django-extensions/django-extensions/blob/7e0bef97ea6cb7f9eea5e2528e3a985a83a7b9b8/django_extensions/compat.py#L33-L40
def get_template_setting(template_key, default=None): """ Read template settings """ templates_var = getattr(settings, 'TEMPLATES', None) if templates_var: for tdict in templates_var: if template_key in tdict: return tdict[template_key] return default
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Read template settings
[ "Read", "template", "settings" ]
python
train
pycontribs/pyrax
pyrax/clouddatabases.py
https://github.com/pycontribs/pyrax/blob/9ddfd5064b3a292d7337906f3b2d5dce95b50b99/pyrax/clouddatabases.py#L625-L631
def update(self, name=None, password=None, host=None): """ Allows you to change one or more of the user's username, password, or host. """ return self.manager.update(self, name=name, password=password, host=host)
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Allows you to change one or more of the user's username, password, or host.
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python
train
kristianfoerster/melodist
melodist/station.py
https://github.com/kristianfoerster/melodist/blob/ddc155c77b65f791be0021dbbaf68c6bac42ecbd/melodist/station.py#L340-L383
def disaggregate_radiation(self, method='pot_rad', pot_rad=None): """ Disaggregate solar radiation. Parameters ---------- method : str, optional Disaggregation method. ``pot_rad`` Calculates potential clear-sky hourly radiation and scales...
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Disaggregate solar radiation. Parameters ---------- method : str, optional Disaggregation method. ``pot_rad`` Calculates potential clear-sky hourly radiation and scales it according to the mean daily radiation. (Default) ``po...
[ "Disaggregate", "solar", "radiation", "." ]
python
train
hyperledger/indy-sdk
wrappers/python/indy/anoncreds.py
https://github.com/hyperledger/indy-sdk/blob/55240dc170308d7883c48f03f308130a6d077be6/wrappers/python/indy/anoncreds.py#L127-L208
async def issuer_create_and_store_revoc_reg(wallet_handle: int, issuer_did: str, revoc_def_type: Optional[str], tag: str, cred_def_id: str, ...
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Create a new revocation registry for the given credential definition as tuple of entities: - Revocation registry definition that encapsulates credentials definition reference, revocation type specific configuration and secrets used for credentials revocation - Revocation registry state that stores the inf...
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python
train
sdispater/pendulum
pendulum/tz/zoneinfo/reader.py
https://github.com/sdispater/pendulum/blob/94d28b0d3cb524ae02361bd1ed7ea03e2e655e4e/pendulum/tz/zoneinfo/reader.py#L35-L46
def read_for(self, timezone): # type: (str) -> Timezone """ Read the zoneinfo structure for a given timezone name. :param timezone: The timezone. """ try: file_path = pytzdata.tz_path(timezone) except TimezoneNotFound: raise InvalidTimezone(timez...
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Read the zoneinfo structure for a given timezone name. :param timezone: The timezone.
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python
train
odlgroup/odl
odl/util/utility.py
https://github.com/odlgroup/odl/blob/b8443f6aca90e191ba36c91d32253c5a36249a6c/odl/util/utility.py#L456-L511
def complex_dtype(dtype, default=None): """Return complex counterpart of ``dtype`` if existing, else ``default``. Parameters ---------- dtype : Real or complex floating point data type. It can be given in any way the `numpy.dtype` constructor understands. default : Object to...
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Return complex counterpart of ``dtype`` if existing, else ``default``. Parameters ---------- dtype : Real or complex floating point data type. It can be given in any way the `numpy.dtype` constructor understands. default : Object to be returned if no complex counterpart is found...
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python
train
chaoss/grimoirelab-perceval
perceval/backends/core/jira.py
https://github.com/chaoss/grimoirelab-perceval/blob/41c908605e88b7ebc3a536c643fa0f212eaf9e0e/perceval/backends/core/jira.py#L336-L344
def get_comments(self, issue_id): """Retrieve all the comments of a given issue. :param issue_id: ID of the issue """ url = urijoin(self.base_url, self.RESOURCE, self.VERSION_API, self.ISSUE, issue_id, self.COMMENT) comments = self.get_items(DEFAULT_DATETIME, url, expand_fields=...
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Retrieve all the comments of a given issue. :param issue_id: ID of the issue
[ "Retrieve", "all", "the", "comments", "of", "a", "given", "issue", "." ]
python
test
priestc/giotto
giotto/contrib/auth/models.py
https://github.com/priestc/giotto/blob/d4c26380caefa7745bb27135e315de830f7254d3/giotto/contrib/auth/models.py#L10-L18
def basic_register(username, password, password2): """ Register a user and session, and then return the session_key and user. """ if password != password2: raise InvalidInput(password={'message': "Passwords do not match"}, username={'value': username}) user = User....
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Register a user and session, and then return the session_key and user.
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python
train
cloud9ers/gurumate
environment/lib/python2.7/site-packages/IPython/core/builtin_trap.py
https://github.com/cloud9ers/gurumate/blob/075dc74d1ee62a8c6b7a8bf2b271364f01629d1e/environment/lib/python2.7/site-packages/IPython/core/builtin_trap.py#L91-L96
def remove_builtin(self, key, orig): """Remove an added builtin and re-set the original.""" if orig is BuiltinUndefined: del __builtin__.__dict__[key] else: __builtin__.__dict__[key] = orig
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Remove an added builtin and re-set the original.
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python
test
swistakm/graceful
src/graceful/serializers.py
https://github.com/swistakm/graceful/blob/d4678cb6349a5c843a5e58002fc80140821609e4/src/graceful/serializers.py#L325-L341
def set_attribute(self, obj, attr, value): """Set value of attribute in given object instance. Reason for existence of this method is the fact that 'attribute' can be also a object's key if it is a dict or any other kind of mapping. Args: obj (object): object instance to mo...
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Set value of attribute in given object instance. Reason for existence of this method is the fact that 'attribute' can be also a object's key if it is a dict or any other kind of mapping. Args: obj (object): object instance to modify attr (str): attribute (or key) to cha...
[ "Set", "value", "of", "attribute", "in", "given", "object", "instance", "." ]
python
train
pycontribs/jira
jira/resources.py
https://github.com/pycontribs/jira/blob/397db5d78441ed6a680a9b7db4c62030ade1fd8a/jira/resources.py#L621-L641
def update(self, object, globalId=None, application=None, relationship=None): """Update a RemoteLink. 'object' is required. For definitions of the allowable fields for 'object' and the keyword arguments 'globalId', 'application' and 'relationship', see https://developer.atlassian.com/display/JI...
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Update a RemoteLink. 'object' is required. For definitions of the allowable fields for 'object' and the keyword arguments 'globalId', 'application' and 'relationship', see https://developer.atlassian.com/display/JIRADEV/JIRA+REST+API+for+Remote+Issue+Links. :param object: the link details to a...
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python
train
deepmipt/DeepPavlov
deeppavlov/metrics/fmeasure.py
https://github.com/deepmipt/DeepPavlov/blob/f3e4a69a3764d25d2f5bad4f1f1aebc872b00f9c/deeppavlov/metrics/fmeasure.py#L40-L56
def round_f1(y_true, y_predicted): """ Calculates F1 (binary) measure. Args: y_true: list of true values y_predicted: list of predicted values Returns: F1 score """ try: predictions = [np.round(x) for x in y_predicted] except TypeError: predictions =...
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Calculates F1 (binary) measure. Args: y_true: list of true values y_predicted: list of predicted values Returns: F1 score
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python
test
mozilla-releng/scriptworker
scriptworker/constants.py
https://github.com/mozilla-releng/scriptworker/blob/8e97bbd83b9b578565ec57904c966dd6ae4ef0ae/scriptworker/constants.py#L463-L475
def get_reversed_statuses(context): """Return a mapping of exit codes to status strings. Args: context (scriptworker.context.Context): the scriptworker context Returns: dict: the mapping of exit codes to status strings. """ _rev = {v: k for k, v in STATUSES.items()} _rev.updat...
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Return a mapping of exit codes to status strings. Args: context (scriptworker.context.Context): the scriptworker context Returns: dict: the mapping of exit codes to status strings.
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python
train
evhub/coconut
coconut/compiler/compiler.py
https://github.com/evhub/coconut/blob/ff97177344e7604e89a0a98a977a87ed2a56fc6d/coconut/compiler/compiler.py#L810-L824
def leading_whitespace(self, inputstring): """Count leading whitespace.""" count = 0 for i, c in enumerate(inputstring): if c == " ": count += 1 elif c == "\t": count += tabworth - (i % tabworth) else: break ...
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Count leading whitespace.
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python
train
rocky/python-uncompyle6
uncompyle6/scanner.py
https://github.com/rocky/python-uncompyle6/blob/c5d7944e657f0ad05a0e2edd34e1acb27001abc0/uncompyle6/scanner.py#L476-L480
def restrict_to_parent(self, target, parent): """Restrict target to parent structure boundaries.""" if not (parent['start'] < target < parent['end']): target = parent['end'] return target
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Restrict target to parent structure boundaries.
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python
train
elsampsa/valkka-live
valkka/mvision/multiprocess.py
https://github.com/elsampsa/valkka-live/blob/218bb2ecf71c516c85b1b6e075454bba13090cd8/valkka/mvision/multiprocess.py#L150-L163
def preRun_(self): """Create the shared memory client immediately after fork """ self.report("preRun_") super().preRun_() self.client = ShmemRGBClient( name=self.shmem_name, n_ringbuffer=self.n_buffer, # size of ring buffer width=self.image_d...
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Create the shared memory client immediately after fork
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python
train
ml31415/numpy-groupies
numpy_groupies/aggregate_numba.py
https://github.com/ml31415/numpy-groupies/blob/0911e9c59b14e11319e82d0876056ad2a17e6568/numpy_groupies/aggregate_numba.py#L208-L226
def callable(self, nans=False): """Compile a jitted function and loop it over the sorted data.""" jitfunc = nb.njit(self.func, nogil=True) def _loop(sortidx, group_idx, a, ret): size = len(ret) group_idx_srt = group_idx[sortidx] a_srt = a[sortidx] ...
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Compile a jitted function and loop it over the sorted data.
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python
train
undertheseanlp/languageflow
languageflow/file_utils.py
https://github.com/undertheseanlp/languageflow/blob/1436e0bf72803e02ccf727f41e8fc85ba167d9fe/languageflow/file_utils.py#L102-L153
def get_from_cache(url: str, cache_dir: Path = None) -> Path: """ Given a URL, look for the corresponding dataset in the local cache. If it's not there, download it. Then return the path to the cached file. """ cache_dir.mkdir(parents=True, exist_ok=True) filename = re.sub(r'.+/', '', url) ...
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Given a URL, look for the corresponding dataset in the local cache. If it's not there, download it. Then return the path to the cached file.
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python
valid
ozak/georasters
georasters/georasters.py
https://github.com/ozak/georasters/blob/0612bd91bb2a2cb2f1d59ba89c1ff131dae27d70/georasters/georasters.py#L990-L1004
def pysal_Join_Counts(self, **kwargs): """ Compute join count statistics for GeoRaster Usage: geo.pysal_Join_Counts(permutations = 1000, rook=True) arguments passed to raster_weights() and pysal.Join_Counts See help(gr.raster_weights), help(pysal.Join_Counts) for option...
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Compute join count statistics for GeoRaster Usage: geo.pysal_Join_Counts(permutations = 1000, rook=True) arguments passed to raster_weights() and pysal.Join_Counts See help(gr.raster_weights), help(pysal.Join_Counts) for options
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python
train
pycontribs/pyrax
pyrax/object_storage.py
https://github.com/pycontribs/pyrax/blob/9ddfd5064b3a292d7337906f3b2d5dce95b50b99/pyrax/object_storage.py#L1195-L1202
def get_cdn_log_retention(self, container): """ Returns the status of the setting for CDN log retention for the specified container. """ resp, resp_body = self.api.cdn_request("/%s" % utils.get_name(container), method="HEAD") return resp.headers.get("x-log...
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Returns the status of the setting for CDN log retention for the specified container.
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python
train
pyQode/pyqode.core
pyqode/core/widgets/tabs.py
https://github.com/pyQode/pyqode.core/blob/a99ec6cd22d519394f613309412f8329dc4e90cb/pyqode/core/widgets/tabs.py#L428-L441
def _on_dirty_changed(self, dirty): """ Adds a star in front of a dirtt tab and emits dirty_changed. """ try: title = self._current._tab_name index = self.indexOf(self._current) if dirty: self.setTabText(index, "* " + title) ...
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Adds a star in front of a dirtt tab and emits dirty_changed.
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python
train
MIT-LCP/wfdb-python
wfdb/io/_signal.py
https://github.com/MIT-LCP/wfdb-python/blob/cc8c9e9e44f10af961b7a9d8ae03708b31ac8a8c/wfdb/io/_signal.py#L754-L894
def _rd_segment(file_name, dir_name, pb_dir, fmt, n_sig, sig_len, byte_offset, samps_per_frame, skew, sampfrom, sampto, channels, smooth_frames, ignore_skew): """ Read the digital samples from a single segment record's associated dat file(s). Parameters ---------- ...
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Read the digital samples from a single segment record's associated dat file(s). Parameters ---------- file_name : list The names of the dat files to be read. dir_name : str The full directory where the dat file(s) are located, if the dat file(s) are local. pb_dir : str ...
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python
train
ska-sa/purr
Purr/Editors.py
https://github.com/ska-sa/purr/blob/4c848768d0485d0f88b30850d0d5372221b21b66/Purr/Editors.py#L436-L468
def addDataProducts(self, dps): """Adds new data products to listview. dps is a list of DP objects. Returns True if new (non-quiet) DPs are added, or if existing non-quiet dps are updated. (this usually tells the main window to wake up) """ busy = Purr.BusyIndicator() wak...
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Adds new data products to listview. dps is a list of DP objects. Returns True if new (non-quiet) DPs are added, or if existing non-quiet dps are updated. (this usually tells the main window to wake up)
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python
train
crdoconnor/commandlib
commandlib/command.py
https://github.com/crdoconnor/commandlib/blob/b630364fd7b0d189b388e22a7f43235d182e12e4/commandlib/command.py#L161-L168
def with_trailing_args(self, *arguments): """ Return new Command object that will be run with specified trailing arguments. """ new_command = copy.deepcopy(self) new_command._trailing_args = [str(arg) for arg in arguments] return new_command
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Return new Command object that will be run with specified trailing arguments.
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python
train
ToFuProject/tofu
tofu/data/_core.py
https://github.com/ToFuProject/tofu/blob/39d6b2e7ced9e13666572dfd37e19403f1d6ff8d/tofu/data/_core.py#L904-L921
def set_dtreat_indt(self, t=None, indt=None): """ Store the desired index array for the time vector If an array of indices (refering to self.ddataRef['t'] is not provided, uses self.select_t(t=t) to produce it """ lC = [indt is not None, t is not None] if all(lC): ...
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Store the desired index array for the time vector If an array of indices (refering to self.ddataRef['t'] is not provided, uses self.select_t(t=t) to produce it
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python
train
pycontribs/pyrax
pyrax/clouddatabases.py
https://github.com/pycontribs/pyrax/blob/9ddfd5064b3a292d7337906f3b2d5dce95b50b99/pyrax/clouddatabases.py#L483-L488
def grant_user_access(self, user, db_names, strict=True): """ Gives access to the databases listed in `db_names` to the user. """ return self._user_manager.grant_user_access(user, db_names, strict=strict)
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Gives access to the databases listed in `db_names` to the user.
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python
train
ozgurgunes/django-manifest
manifest/accounts/utils.py
https://github.com/ozgurgunes/django-manifest/blob/9873bbf2a475b76284ad7e36b2b26c92131e72dd/manifest/accounts/utils.py#L113-L127
def get_datetime_now(): """ Returns datetime object with current point in time. In Django 1.4+ it uses Django's django.utils.timezone.now() which returns an aware or naive datetime that represents the current point in time when ``USE_TZ`` in project's settings is True or False respectively. In ...
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Returns datetime object with current point in time. In Django 1.4+ it uses Django's django.utils.timezone.now() which returns an aware or naive datetime that represents the current point in time when ``USE_TZ`` in project's settings is True or False respectively. In older versions of Django it uses dat...
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python
train
summanlp/textrank
summa/preprocessing/snowball.py
https://github.com/summanlp/textrank/blob/6844bbe8c4b2b468020ae0dfd6574a743f9ad442/summa/preprocessing/snowball.py#L237-L275
def _rv_standard(self, word, vowels): """ Return the standard interpretation of the string region RV. If the second letter is a consonant, RV is the region after the next following vowel. If the first two letters are vowels, RV is the region after the next following consonant. O...
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Return the standard interpretation of the string region RV. If the second letter is a consonant, RV is the region after the next following vowel. If the first two letters are vowels, RV is the region after the next following consonant. Otherwise, RV is the region after the third letter....
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python
train
tensorlayer/tensorlayer
tensorlayer/prepro.py
https://github.com/tensorlayer/tensorlayer/blob/aa9e52e36c7058a7e6fd81d36563ca6850b21956/tensorlayer/prepro.py#L918-L961
def flip_axis_multi(x, axis, is_random=False): """Flip the axises of multiple images together, such as flip left and right, up and down, randomly or non-randomly, Parameters ----------- x : list of numpy.array List of images with dimension of [n_images, row, col, channel] (default). others ...
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Flip the axises of multiple images together, such as flip left and right, up and down, randomly or non-randomly, Parameters ----------- x : list of numpy.array List of images with dimension of [n_images, row, col, channel] (default). others : args See ``tl.prepro.flip_axis``. Retur...
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python
valid
Kyria/EsiPy
esipy/utils.py
https://github.com/Kyria/EsiPy/blob/06407a0218a126678f80d8a7e8a67b9729327865/esipy/utils.py#L74-L88
def generate_code_challenge(verifier): """ source: https://github.com/openstack/deb-python-oauth2client Creates a 'code_challenge' as described in section 4.2 of RFC 7636 by taking the sha256 hash of the verifier and then urlsafe base64-encoding it. Args: verifier: bytestring, representi...
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source: https://github.com/openstack/deb-python-oauth2client Creates a 'code_challenge' as described in section 4.2 of RFC 7636 by taking the sha256 hash of the verifier and then urlsafe base64-encoding it. Args: verifier: bytestring, representing a code_verifier as generated by gene...
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python
train
peri-source/peri
scripts/does_matter/common.py
https://github.com/peri-source/peri/blob/61beed5deaaf978ab31ed716e8470d86ba639867/scripts/does_matter/common.py#L68-L127
def perfect_platonic_per_pixel(N, R, scale=11, pos=None, zscale=1.0, returnpix=None): """ Create a perfect platonic sphere of a given radius R by supersampling by a factor scale on a grid of size N. Scale must be odd. We are able to perfectly position these particles up to 1/scale. Therefore, let'...
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Create a perfect platonic sphere of a given radius R by supersampling by a factor scale on a grid of size N. Scale must be odd. We are able to perfectly position these particles up to 1/scale. Therefore, let's only allow those types of shifts for now, but return the actual position used for the placem...
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python
valid
pydata/xarray
xarray/core/dataset.py
https://github.com/pydata/xarray/blob/6d93a95d05bdbfc33fff24064f67d29dd891ab58/xarray/core/dataset.py#L1373-L1408
def info(self, buf=None): """ Concise summary of a Dataset variables and attributes. Parameters ---------- buf : writable buffer, defaults to sys.stdout See Also -------- pandas.DataFrame.assign netCDF's ncdump """ if buf is None...
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Concise summary of a Dataset variables and attributes. Parameters ---------- buf : writable buffer, defaults to sys.stdout See Also -------- pandas.DataFrame.assign netCDF's ncdump
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python
train
rameshg87/pyremotevbox
pyremotevbox/ZSI/schema.py
https://github.com/rameshg87/pyremotevbox/blob/123dffff27da57c8faa3ac1dd4c68b1cf4558b1a/pyremotevbox/ZSI/schema.py#L164-L189
def getElementDeclaration(cls, namespaceURI, name, isref=False, lazy=False): '''Grab an element declaration, returns a typecode instance representation or a typecode class definition. An element reference has its own facets, and is local so it will not be cached. Parameters: ...
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python
train
HazyResearch/fonduer
src/fonduer/learning/classifier.py
https://github.com/HazyResearch/fonduer/blob/4520f86a716f03dcca458a9f4bddac75b4e7068f/src/fonduer/learning/classifier.py#L333-L362
def marginals(self, X): """ Compute the marginals for the given candidates X. Note: split into batches to avoid OOM errors. :param X: The input data which is a (list of Candidate objects, a sparse matrix of corresponding features) pair or a list of (Candidate, fe...
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Compute the marginals for the given candidates X. Note: split into batches to avoid OOM errors. :param X: The input data which is a (list of Candidate objects, a sparse matrix of corresponding features) pair or a list of (Candidate, features) pairs. :type X: pair or list
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python
train
peri-source/peri
peri/opt/addsubtract.py
https://github.com/peri-source/peri/blob/61beed5deaaf978ab31ed716e8470d86ba639867/peri/opt/addsubtract.py#L213-L243
def should_particle_exist(absent_err, present_err, absent_d, present_d, im_change_frac=0.2, min_derr=0.1): """ Checks whether or not adding a particle should be present. Parameters ---------- absent_err : Float The state error without the particle. present_err ...
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Checks whether or not adding a particle should be present. Parameters ---------- absent_err : Float The state error without the particle. present_err : Float The state error with the particle. absent_d : numpy.ndarray The state residuals without the particle. present_d :...
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python
valid
inveniosoftware/invenio-oauth2server
invenio_oauth2server/views/settings.py
https://github.com/inveniosoftware/invenio-oauth2server/blob/7033d3495c1a2b830e101e43918e92a37bbb49f2/invenio_oauth2server/views/settings.py#L183-L188
def client_reset(client): """Reset client's secret.""" if request.form.get('reset') == 'yes': client.reset_client_secret() db.session.commit() return redirect(url_for('.client_view', client_id=client.client_id))
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Reset client's secret.
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python
train
scanny/python-pptx
pptx/shapes/freeform.py
https://github.com/scanny/python-pptx/blob/d6ab8234f8b03953d2f831ff9394b1852db34130/pptx/shapes/freeform.py#L293-L298
def new(cls, freeform_builder, x, y): """Return a new _LineSegment object ending at point *(x, y)*. Both *x* and *y* are rounded to the nearest integer before use. """ return cls(freeform_builder, int(round(x)), int(round(y)))
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Return a new _LineSegment object ending at point *(x, y)*. Both *x* and *y* are rounded to the nearest integer before use.
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python
train
arne-cl/discoursegraphs
src/discoursegraphs/readwrite/conano.py
https://github.com/arne-cl/discoursegraphs/blob/842f0068a3190be2c75905754521b176b25a54fb/src/discoursegraphs/readwrite/conano.py#L148-L162
def is_valid(self, tree): """ returns true, iff the order of the tokens in the graph are the same as in the Conano file (converted to plain text). """ conano_plaintext = etree.tostring(tree, encoding='utf8', method='text') token_str_list = conano_plaintext.split() ...
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returns true, iff the order of the tokens in the graph are the same as in the Conano file (converted to plain text).
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python
train
zhebrak/raftos
raftos/state.py
https://github.com/zhebrak/raftos/blob/0d6f9e049b526279b1035f597291a96cf50c9b40/raftos/state.py#L42-L57
def validate_commit_index(func): """Apply to State Machine everything up to commit index""" @functools.wraps(func) def wrapped(self, *args, **kwargs): for not_applied in range(self.log.last_applied + 1, self.log.commit_index + 1): self.state_machine.apply(self.log[not_applied]['command'...
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Apply to State Machine everything up to commit index
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python
train
CI-WATER/gsshapy
gsshapy/base/file_base.py
https://github.com/CI-WATER/gsshapy/blob/00fd4af0fd65f1614d75a52fe950a04fb0867f4c/gsshapy/base/file_base.py#L37-L80
def read(self, directory, filename, session, spatial=False, spatialReferenceID=4236, replaceParamFile=None, **kwargs): """ Generic read file into database method. Args: directory (str): Directory containing the file to be read. filename (str): Name of the fi...
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python
train
csparpa/pyowm
pyowm/commons/frontlinkedlist.py
https://github.com/csparpa/pyowm/blob/cdd59eb72f32f7238624ceef9b2e2329a5ebd472/pyowm/commons/frontlinkedlist.py#L203-L215
def contains(self, data): """ Checks if the provided data is stored in at least one node of the list. :param data: the seeked data :type data: object :returns: a boolean """ for item in self: if item.data() == data: return True ...
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Checks if the provided data is stored in at least one node of the list. :param data: the seeked data :type data: object :returns: a boolean
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python
train
Damgaard/PyImgur
pyimgur/__init__.py
https://github.com/Damgaard/PyImgur/blob/606f17078d24158632f807430f8d0b9b3cd8b312/pyimgur/__init__.py#L989-L993
def get_image(self, id): """Return a Image object representing the image with the given id.""" url = self._base_url + "/3/image/{0}".format(id) resp = self._send_request(url) return Image(resp, self)
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Return a Image object representing the image with the given id.
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python
train
edwards-lab/MVtest
meanvar/mvresult.py
https://github.com/edwards-lab/MVtest/blob/fe8cf627464ef59d68b7eda628a19840d033882f/meanvar/mvresult.py#L68-L110
def print_header(self, f=sys.stdout, verbose=False): """Prints header to f (will write header based on verbose) :param f: stream to print output :param verbose: print all data or only the most important parts? """ self.var_count = 2 + len(self.covar_labels) if verbose: ...
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python
train
restran/mountains
mountains/ssh/__init__.py
https://github.com/restran/mountains/blob/a97fee568b112f4e10d878f815d0db3dd0a98d74/mountains/ssh/__init__.py#L219-L232
def get(self, remote_file, local_file): """ 下载文件 :param remote_file: :param local_file: :return: """ sftp = self.get_sftp() try: sftp.get(remote_file, local_file) except Exception as e: logger.error('下载文件失败') log...
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下载文件 :param remote_file: :param local_file: :return:
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python
train
saltstack/salt
salt/netapi/__init__.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/netapi/__init__.py#L163-L176
def runner_async(self, fun, **kwargs): ''' Run `runner modules <all-salt.runners>` asynchronously Wraps :py:meth:`salt.runner.RunnerClient.cmd_async`. Note that runner functions must be called using keyword arguments. Positional arguments are not supported. :return: ev...
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Run `runner modules <all-salt.runners>` asynchronously Wraps :py:meth:`salt.runner.RunnerClient.cmd_async`. Note that runner functions must be called using keyword arguments. Positional arguments are not supported. :return: event data and a job ID for the executed function.
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python
train
rodynnz/xccdf
src/xccdf/models/tailoring.py
https://github.com/rodynnz/xccdf/blob/1b9dc2f06b5cce8db2a54c5f95a8f6bcf5cb6981/src/xccdf/models/tailoring.py#L80-L124
def load_children(self): """ Load the subelements from the xml_element in its correspondent classes. :returns: List of child objects. :rtype: list :raises CardinalityException: If there is more than one Version child. :raises CardinalityException: If there is no Version ...
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Load the subelements from the xml_element in its correspondent classes. :returns: List of child objects. :rtype: list :raises CardinalityException: If there is more than one Version child. :raises CardinalityException: If there is no Version child. :raises CardinalityException: ...
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python
train
jobovy/galpy
galpy/util/bovy_plot.py
https://github.com/jobovy/galpy/blob/9c5b9fe65d58835624dffe432be282060918ee08/galpy/util/bovy_plot.py#L88-L119
def bovy_end_print(filename,**kwargs): """ NAME: bovy_end_print PURPOSE: saves the current figure(s) to filename INPUT: filename - filename for plot (with extension) OPTIONAL INPUTS: format - file-format OUTPUT: (none) HISTORY: 2009-12-23 ...
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NAME: bovy_end_print PURPOSE: saves the current figure(s) to filename INPUT: filename - filename for plot (with extension) OPTIONAL INPUTS: format - file-format OUTPUT: (none) HISTORY: 2009-12-23 - Written - Bovy (NYU)
[ "NAME", ":" ]
python
train
devassistant/devassistant
devassistant/yaml_assistant_loader.py
https://github.com/devassistant/devassistant/blob/2dbfeaa666a64127263664d18969c55d19ecc83e/devassistant/yaml_assistant_loader.py#L137-L170
def get_assistants_file_hierarchy(cls, dirs): """Returns assistants file hierarchy structure (see below) representing assistant hierarchy in given directories. It works like this: 1. It goes through all *.yaml files in all given directories and adds them into hierarchy (if th...
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Returns assistants file hierarchy structure (see below) representing assistant hierarchy in given directories. It works like this: 1. It goes through all *.yaml files in all given directories and adds them into hierarchy (if there are two files with same name in more directories, the...
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python
train
acutesoftware/AIKIF
aikif/dataTools/cls_sql_code_generator.py
https://github.com/acutesoftware/AIKIF/blob/fcf1582dc5f884b9a4fa7c6e20e9de9d94d21d03/aikif/dataTools/cls_sql_code_generator.py#L211-L217
def update_old_to_new(self, col, old_val, new_val): """ simply updates all rows and sets COL to NEW_VAL where col = old_val e.g. update_old_to_new("NAME", "The University of Adelaide", "University of Adelaide") will generate UPDATE table op SET op.NAME = 'University of Adelaide' WHERE op...
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simply updates all rows and sets COL to NEW_VAL where col = old_val e.g. update_old_to_new("NAME", "The University of Adelaide", "University of Adelaide") will generate UPDATE table op SET op.NAME = 'University of Adelaide' WHERE op.NAME = 'The University of Adelaide';
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python
train
python-rope/rope
rope/base/project.py
https://github.com/python-rope/rope/blob/1c9f9cd5964b099a99a9111e998f0dc728860688/rope/base/project.py#L235-L238
def get_python_files(self): """Returns all python files available in the project""" return [resource for resource in self.get_files() if self.pycore.is_python_file(resource)]
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Returns all python files available in the project
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python
train
saltstack/salt
salt/cloud/clouds/linode.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/cloud/clouds/linode.py#L1472-L1502
def _list_linodes(full=False): ''' Helper function to format and parse linode data ''' nodes = _query('linode', 'list')['DATA'] ips = get_ips() ret = {} for node in nodes: this_node = {} linode_id = six.text_type(node['LINODEID']) this_node['id'] = linode_id ...
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Helper function to format and parse linode data
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python
train
solvebio/solvebio-python
solvebio/utils/tabulate.py
https://github.com/solvebio/solvebio-python/blob/b29614643043afd19c1d8074e8f25c6700d51a73/solvebio/utils/tabulate.py#L508-L520
def _line_segment_with_colons(linefmt, align, colwidth): """Return a segment of a horizontal line with optional colons which indicate column's alignment (as in `pipe` output format).""" fill = linefmt.hline w = colwidth if align in ["right", "decimal"]: return (fill[0] * (w - 1)) + ":" e...
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Return a segment of a horizontal line with optional colons which indicate column's alignment (as in `pipe` output format).
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python
test
mk-fg/feedjack
feedjack/fjcloud.py
https://github.com/mk-fg/feedjack/blob/3fe65c0f66dc2cfdf45834aaa7235ec9f81b3ca3/feedjack/fjcloud.py#L42-L50
def getquery(query): 'Performs a query and get the results.' try: conn = connection.cursor() conn.execute(query) data = conn.fetchall() conn.close() except: data = list() return data
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Performs a query and get the results.
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python
train
totalgood/nlpia
src/nlpia/futil.py
https://github.com/totalgood/nlpia/blob/efa01126275e9cd3c3a5151a644f1c798a9ec53f/src/nlpia/futil.py#L346-L355
def read_json(filepath, intkeys=True, intvalues=True): """ read text from filepath (`open(find_filepath(expand_filepath(fp)))`) then json.loads() >>> read_json('HTTP_1.1 Status Code Definitions.html.json') {'100': 'Continue', '101': 'Switching Protocols',... """ d = json.load(ensure_open(...
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read text from filepath (`open(find_filepath(expand_filepath(fp)))`) then json.loads() >>> read_json('HTTP_1.1 Status Code Definitions.html.json') {'100': 'Continue', '101': 'Switching Protocols',...
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python
train
arviz-devs/arviz
arviz/data/io_pystan.py
https://github.com/arviz-devs/arviz/blob/d04d8da07f029fd2931f48d2f7f324cf393e5277/arviz/data/io_pystan.py#L270-L275
def sample_stats_prior_to_xarray(self): """Extract sample_stats_prior from prior.""" prior = self.prior prior_model = self.prior_model data = get_sample_stats_stan3(prior, model=prior_model) return dict_to_dataset(data, library=self.stan, coords=self.coords, dims=self.dims)
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Extract sample_stats_prior from prior.
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python
train
jhermann/rituals
src/rituals/acts/documentation.py
https://github.com/jhermann/rituals/blob/1534f50d81e19bbbe799e2eba0acdefbce047c06/src/rituals/acts/documentation.py#L295-L311
def _to_pypi(self, docs_base, release): """Upload to PyPI.""" url = None with self._zipped(docs_base) as handle: reply = requests.post(self.params['url'], auth=get_pypi_auth(), allow_redirects=False, files=dict(content=(self.cfg.project.name + '.zip'...
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Upload to PyPI.
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python
valid
monarch-initiative/dipper
dipper/sources/OMIA.py
https://github.com/monarch-initiative/dipper/blob/24cc80db355bbe15776edc5c7b41e0886959ba41/dipper/sources/OMIA.py#L327-L360
def process_classes(self, limit): """ After all species have been processed . Loop through the xml file and process the articles, breed, genes, phenes, and phenotype-grouping classes. We add elements to the graph, and store the id-to-label in the label_hash dict, ...
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After all species have been processed . Loop through the xml file and process the articles, breed, genes, phenes, and phenotype-grouping classes. We add elements to the graph, and store the id-to-label in the label_hash dict, along with the internal key-to-external id in the id_h...
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python
train
KE-works/pykechain
pykechain/client.py
https://github.com/KE-works/pykechain/blob/b0296cf34328fd41660bf6f0b9114fd0167c40c4/pykechain/client.py#L992-L1041
def _create_activity2(self, parent, name, activity_type=ActivityType.TASK): """Create a new activity. .. important:: This function creates activities for KE-chain versions later than 2.9.0-135 In effect where the module 'wim' has version '>=2.0.0'. The version of 'wi...
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Create a new activity. .. important:: This function creates activities for KE-chain versions later than 2.9.0-135 In effect where the module 'wim' has version '>=2.0.0'. The version of 'wim' in KE-chain can be found in the property :attr:`Client.app_versions` In WIM...
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python
train
openthread/openthread
tools/harness-thci/OpenThread.py
https://github.com/openthread/openthread/blob/0208d10563aa21c518092985c78ecf9cd223ab74/tools/harness-thci/OpenThread.py#L1058-L1071
def getNetworkFragmentID(self): """get current partition id of Thread Network Partition from LeaderData Returns: The Thread network Partition Id """ print '%s call getNetworkFragmentID' % self.port if not self.__isOpenThreadRunning(): print 'OpenThread is...
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get current partition id of Thread Network Partition from LeaderData Returns: The Thread network Partition Id
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python
train
inveniosoftware/invenio-userprofiles
invenio_userprofiles/views.py
https://github.com/inveniosoftware/invenio-userprofiles/blob/4c682e7d67a4cab8dc38472a31fa1c34cbba03dd/invenio_userprofiles/views.py#L133-L163
def handle_profile_form(form): """Handle profile update form.""" form.process(formdata=request.form) if form.validate_on_submit(): email_changed = False with db.session.begin_nested(): # Update profile. current_userprofile.username = form.username.data cu...
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Handle profile update form.
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python
train
mailgun/talon
talon/signature/extraction.py
https://github.com/mailgun/talon/blob/cdd84563dd329c4f887591807870d10015e0c7a7/talon/signature/extraction.py#L66-L98
def _mark_lines(lines, sender): """Mark message lines with markers to distinguish signature lines. Markers: * e - empty line * s - line identified as signature * t - other i.e. ordinary text line >>> mark_message_lines(['Some text', '', 'Bob'], 'Bob') 'tes' """ global EXTRACTOR ...
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Mark message lines with markers to distinguish signature lines. Markers: * e - empty line * s - line identified as signature * t - other i.e. ordinary text line >>> mark_message_lines(['Some text', '', 'Bob'], 'Bob') 'tes'
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python
train
pgmpy/pgmpy
pgmpy/factors/distributions/GaussianDistribution.py
https://github.com/pgmpy/pgmpy/blob/9381a66aba3c3871d3ccd00672b148d17d63239e/pgmpy/factors/distributions/GaussianDistribution.py#L126-L149
def precision_matrix(self): """ Returns the precision matrix of the distribution. Precision is defined as the inverse of the variance. This method returns the inverse matrix of the covariance. Examples -------- >>> import numpy as np >>> from pgmpy.facto...
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Returns the precision matrix of the distribution. Precision is defined as the inverse of the variance. This method returns the inverse matrix of the covariance. Examples -------- >>> import numpy as np >>> from pgmpy.factors.distributions import GaussianDistribution as ...
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python
train
tBaxter/activity-monitor
activity_monitor/managers.py
https://github.com/tBaxter/activity-monitor/blob/be6c6edc7c6b4141923b47376502cde0f785eb68/activity_monitor/managers.py#L41-L45
def get_for_model(self, model): """ Return a QuerySet of only items of a certain type. """ return self.filter(content_type=ContentType.objects.get_for_model(model))
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Return a QuerySet of only items of a certain type.
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python
train
uktrade/directory-validators
directory_validators/company.py
https://github.com/uktrade/directory-validators/blob/e01f9d2aec683e34d978e4f67ed383ea2f9b85a0/directory_validators/company.py#L142-L156
def case_study_social_link_linkedin(value): """ Confirms that the social media url is pointed at the correct domain. Args: value (string): The url to check. Raises: django.forms.ValidationError """ parsed = parse.urlparse(value.lower()) if not parsed.netloc.endswith('link...
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Confirms that the social media url is pointed at the correct domain. Args: value (string): The url to check. Raises: django.forms.ValidationError
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python
train
SMTG-UCL/sumo
sumo/electronic_structure/dos.py
https://github.com/SMTG-UCL/sumo/blob/47aec6bbfa033a624435a65bd4edabd18bfb437f/sumo/electronic_structure/dos.py#L212-L267
def get_element_pdos(dos, element, sites, lm_orbitals=None, orbitals=None): """Get the projected density of states for an element. Args: dos (:obj:`~pymatgen.electronic_structure.dos.CompleteDos`): The density of states. element (str): Element symbol. E.g. 'Zn'. sites (tuple...
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Get the projected density of states for an element. Args: dos (:obj:`~pymatgen.electronic_structure.dos.CompleteDos`): The density of states. element (str): Element symbol. E.g. 'Zn'. sites (tuple): The atomic indices over which to sum the density of states, as a :ob...
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python
train
tensorflow/tensorboard
tensorboard/program.py
https://github.com/tensorflow/tensorboard/blob/8e5f497b48e40f2a774f85416b8a35ac0693c35e/tensorboard/program.py#L358-L410
def with_port_scanning(cls): """Create a server factory that performs port scanning. This function returns a callable whose signature matches the specification of `TensorBoardServer.__init__`, using `cls` as an underlying implementation. It passes through `flags` unchanged except in the case that `flags.port...
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Create a server factory that performs port scanning. This function returns a callable whose signature matches the specification of `TensorBoardServer.__init__`, using `cls` as an underlying implementation. It passes through `flags` unchanged except in the case that `flags.port is None`, in which case it repeat...
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python
train
e3krisztian/pyrene
pyrene/shell.py
https://github.com/e3krisztian/pyrene/blob/ad9f2fb979f06930399c9c8214c3fe3c2d6efa06/pyrene/shell.py#L192-L222
def do_copy(self, line): ''' Copy packages between repos copy SOURCE DESTINATION Where SOURCE can be either LOCAL-FILE or REPO:PACKAGE-SPEC DESTINATION can be either a REPO: or a directory. ''' words = line.split() source, destination = words d...
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Copy packages between repos copy SOURCE DESTINATION Where SOURCE can be either LOCAL-FILE or REPO:PACKAGE-SPEC DESTINATION can be either a REPO: or a directory.
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python
train
saltstack/salt
salt/modules/win_iis.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/win_iis.py#L1503-L1544
def remove_app(name, site): ''' Remove an IIS application. Args: name (str): The application name. site (str): The IIS site name. Returns: bool: True if successful, otherwise False CLI Example: .. code-block:: bash salt '*' win_iis.remove_app name='app0' site...
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Remove an IIS application. Args: name (str): The application name. site (str): The IIS site name. Returns: bool: True if successful, otherwise False CLI Example: .. code-block:: bash salt '*' win_iis.remove_app name='app0' site='site0'
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python
train
mardix/Mocha
mocha/contrib/views/auth.py
https://github.com/mardix/Mocha/blob/bce481cb31a0972061dd99bc548701411dcb9de3/mocha/contrib/views/auth.py#L337-L366
def reset_password(self, action_token, signed_data): """Reset the user password. It was triggered by LOST-PASSWORD """ try: action = "reset-password" user = get_user_by_action_token(action, action_token) if not user or not user.signed_data_match(signed_data, action): ...
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Reset the user password. It was triggered by LOST-PASSWORD
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python
train
joke2k/faker
faker/providers/date_time/__init__.py
https://github.com/joke2k/faker/blob/965824b61132e52d92d1a6ce470396dbbe01c96c/faker/providers/date_time/__init__.py#L1574-L1587
def date_between(self, start_date='-30y', end_date='today'): """ Get a Date object based on a random date between two given dates. Accepts date strings that can be recognized by strtotime(). :param start_date Defaults to 30 years ago :param end_date Defaults to "today" :...
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Get a Date object based on a random date between two given dates. Accepts date strings that can be recognized by strtotime(). :param start_date Defaults to 30 years ago :param end_date Defaults to "today" :example Date('1999-02-02') :return Date
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python
train
ianmiell/shutit
shutit_pexpect.py
https://github.com/ianmiell/shutit/blob/19cd64cdfb23515b106b40213dccff4101617076/shutit_pexpect.py#L1926-L2155
def get_distro_info(self, loglevel=logging.DEBUG): """Get information about which distro we are using, placing it in the environment object. Fails if distro could not be determined. Should be called with the container is started up, and uses as core info as possible. Note: if the install type is apt, it iss...
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Get information about which distro we are using, placing it in the environment object. Fails if distro could not be determined. Should be called with the container is started up, and uses as core info as possible. Note: if the install type is apt, it issues the following: - apt-get update - apt-ge...
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python
train
gmr/email-normalize
email_normalize.py
https://github.com/gmr/email-normalize/blob/407d8271285e40afd77c94ee2dd2180dfdedffdb/email_normalize.py#L103-L137
def normalize(email_address, resolve=True): """Return the normalized email address, removing :param str email_address: The normalized email address :param bool resolve: Resolve the domain :rtype: str """ address = utils.parseaddr(email_address) local_part, domain_part = address[1].lower()....
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Return the normalized email address, removing :param str email_address: The normalized email address :param bool resolve: Resolve the domain :rtype: str
[ "Return", "the", "normalized", "email", "address", "removing" ]
python
train
six8/pytailer
src/tailer/__init__.py
https://github.com/six8/pytailer/blob/8f78431b9d2e63077d7f7150264869506c890024/src/tailer/__init__.py#L153-L182
def follow(self, delay=1.0): """\ Iterator generator that returns lines as data is added to the file. Based on: http://aspn.activestate.com/ASPN/Cookbook/Python/Recipe/157035 """ trailing = True while 1: where = self.file.tell() line = self.file....
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\ Iterator generator that returns lines as data is added to the file. Based on: http://aspn.activestate.com/ASPN/Cookbook/Python/Recipe/157035
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python
train
Iotic-Labs/py-IoticAgent
src/IoticAgent/Core/Validation.py
https://github.com/Iotic-Labs/py-IoticAgent/blob/893e8582ad1dacfe32dfc0ee89452bbd6f57d28d/src/IoticAgent/Core/Validation.py#L298-L306
def __search_text_check_convert(cls, text): """Converts and keeps only words in text deemed to be valid""" text = cls.check_convert_string(text, name='text', no_leading_trailing_whitespace=False) if len(text) > VALIDATION_META_SEARCH_TEXT: raise ValueError("Search text can contain at...
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Converts and keeps only words in text deemed to be valid
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python
train
treycucco/bidon
bidon/spreadsheet/excel.py
https://github.com/treycucco/bidon/blob/d9f24596841d0e69e8ac70a1d1a1deecea95e340/bidon/spreadsheet/excel.py#L78-L81
def _parse_date(self, cell_value): """Attempts to parse a cell_value as a date.""" date_tuple = xlrd.xldate_as_tuple(cell_value, self.raw_sheet.book.datemode) return self.tuple_to_datetime(date_tuple)
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Attempts to parse a cell_value as a date.
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python
train
noxdafox/clipspy
clips/modules.py
https://github.com/noxdafox/clipspy/blob/b22d71a6da821c1715d8fa00d7d75cabc09ed364/clips/modules.py#L102-L109
def modules(self): """Iterates over the defined Modules.""" defmodule = lib.EnvGetNextDefmodule(self._env, ffi.NULL) while defmodule != ffi.NULL: yield Module(self._env, defmodule) defmodule = lib.EnvGetNextDefmodule(self._env, defmodule)
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Iterates over the defined Modules.
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python
train
tensorflow/probability
tensorflow_probability/examples/vq_vae.py
https://github.com/tensorflow/probability/blob/e87fe34111d68c35db0f9eeb4935f1ece9e1a8f5/tensorflow_probability/examples/vq_vae.py#L259-L301
def add_ema_control_dependencies(vector_quantizer, one_hot_assignments, codes, commitment_loss, decay): """Add control dependencies to the commmitment loss to update the codebook. Arg...
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Add control dependencies to the commmitment loss to update the codebook. Args: vector_quantizer: An instance of the VectorQuantizer class. one_hot_assignments: The one-hot vectors corresponding to the matched codebook entry for each code in the batch. codes: A `float`-like `Tensor` containing the l...
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python
test
DLR-RM/RAFCON
source/rafcon/core/execution/execution_engine.py
https://github.com/DLR-RM/RAFCON/blob/24942ef1a904531f49ab8830a1dbb604441be498/source/rafcon/core/execution/execution_engine.py#L280-L298
def run_to_selected_state(self, path, state_machine_id=None): """Execute the state machine until a specific state. This state won't be executed. This is an asynchronous task """ if self.state_machine_manager.get_active_state_machine() is not None: self.state_machine_manager.get_activ...
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Execute the state machine until a specific state. This state won't be executed. This is an asynchronous task
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python
train
jupyter-widgets/ipywidgets
ipywidgets/widgets/widget_selectioncontainer.py
https://github.com/jupyter-widgets/ipywidgets/blob/36fe37594cd5a268def228709ca27e37b99ac606/ipywidgets/widgets/widget_selectioncontainer.py#L33-L46
def set_title(self, index, title): """Sets the title of a container page. Parameters ---------- index : int Index of the container page title : unicode New title """ # JSON dictionaries have string keys, so we convert index to a string ...
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Sets the title of a container page. Parameters ---------- index : int Index of the container page title : unicode New title
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python
train
72squared/redpipe
redpipe/keyspaces.py
https://github.com/72squared/redpipe/blob/e6ee518bc9f3e2fee323c8c53d08997799bd9b1b/redpipe/keyspaces.py#L121-L132
def redis_key(cls, key): """ Get the key we pass to redis. If no namespace is declared, it will use the class name. :param key: str the name of the redis key :return: str """ keyspace = cls.keyspace tpl = cls.keyspace_template key = "%s" % key...
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Get the key we pass to redis. If no namespace is declared, it will use the class name. :param key: str the name of the redis key :return: str
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python
train
zeromake/aiko
aiko/worker.py
https://github.com/zeromake/aiko/blob/53b246fa88652466a9e38ac3d1a99a6198195b0f/aiko/worker.py#L25-L36
def init_process(self) -> None: """ GunicornWorker 初始化回调 """ default_loop = asyncio.get_event_loop() if default_loop.is_running(): default_loop.close() self.loop = asyncio.new_event_loop() asyncio.set_event_loop(self.loop) else: ...
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GunicornWorker 初始化回调
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python
train
openvax/topiary
topiary/sequence_helpers.py
https://github.com/openvax/topiary/blob/04f0077bc4bf1ad350a0e78c26fa48c55fe7813b/topiary/sequence_helpers.py#L19-L50
def protein_subsequences_around_mutations(effects, padding_around_mutation): """ From each effect get a mutant protein sequence and pull out a subsequence around the mutation (based on the given padding). Returns a dictionary of subsequences and a dictionary of subsequence start offsets. """ pro...
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From each effect get a mutant protein sequence and pull out a subsequence around the mutation (based on the given padding). Returns a dictionary of subsequences and a dictionary of subsequence start offsets.
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python
train
juju/charm-helpers
charmhelpers/fetch/__init__.py
https://github.com/juju/charm-helpers/blob/aa785c40c3b7a8c69dbfbc7921d6b9f30142e171/charmhelpers/fetch/__init__.py#L75-L79
def base_url(self, url): """Return url without querystring or fragment""" parts = list(self.parse_url(url)) parts[4:] = ['' for i in parts[4:]] return urlunparse(parts)
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Return url without querystring or fragment
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python
train
thespacedoctor/fundamentals
fundamentals/times.py
https://github.com/thespacedoctor/fundamentals/blob/1d2c007ac74442ec2eabde771cfcacdb9c1ab382/fundamentals/times.py#L18-L39
def get_now_sql_datetime(): """ *A datetime stamp in MySQL format: ``YYYY-MM-DDTHH:MM:SS``* **Return:** - ``now`` -- current time and date in MySQL format **Usage:** .. code-block:: python from fundamentals import times now = times.get_now_sql_datetime() ...
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*A datetime stamp in MySQL format: ``YYYY-MM-DDTHH:MM:SS``* **Return:** - ``now`` -- current time and date in MySQL format **Usage:** .. code-block:: python from fundamentals import times now = times.get_now_sql_datetime() print now # OUT: 201...
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python
train
biocore/burrito-fillings
bfillings/bwa.py
https://github.com/biocore/burrito-fillings/blob/02ab71a46119b40793bd56a4ae00ca15f6dc3329/bfillings/bwa.py#L614-L635
def create_bwa_index_from_fasta_file(fasta_in, params=None): """Create a BWA index from an input fasta file. fasta_in: the input fasta file from which to create the index params: dict of bwa index specific paramters This method returns a dictionary where the keys are the various output suffixes (....
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Create a BWA index from an input fasta file. fasta_in: the input fasta file from which to create the index params: dict of bwa index specific paramters This method returns a dictionary where the keys are the various output suffixes (.amb, .ann, .bwt, .pac, .sa) and the values are open file objects...
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python
train
vslutov/turingmarkov
turingmarkov/turing.py
https://github.com/vslutov/turingmarkov/blob/63e2ba255d7d0d868cbc4bf3e568b1c1bbcf38ce/turingmarkov/turing.py#L175-L185
def build_machine(lines): """Build machine from list of lines.""" if lines == []: raise SyntaxError('Empty file') else: machine = Machine(lines[0].split()) for line in lines[1:]: if line.strip() != '': machine.add_state(line) machine.check() return...
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Build machine from list of lines.
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python
train
rigetti/quantumflow
quantumflow/circuits.py
https://github.com/rigetti/quantumflow/blob/13a66cabbe8aabf6e023cc675f4a4ebe6ccda8fb/quantumflow/circuits.py#L227-L257
def ccnot_circuit(qubits: Qubits) -> Circuit: """Standard decomposition of CCNOT (Toffoli) gate into six CNOT gates (Plus Hadamard and T gates.) [Nielsen2000]_ .. [Nielsen2000] M. A. Nielsen and I. L. Chuang, Quantum Computation and Quantum Information, Cambridge University Press (2000). ...
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Standard decomposition of CCNOT (Toffoli) gate into six CNOT gates (Plus Hadamard and T gates.) [Nielsen2000]_ .. [Nielsen2000] M. A. Nielsen and I. L. Chuang, Quantum Computation and Quantum Information, Cambridge University Press (2000).
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python
train
CloverHealth/temple
temple/update.py
https://github.com/CloverHealth/temple/blob/d7b75da2459f72ba74d6f3b6e1ab95c3d1b92ccd/temple/update.py#L152-L162
def _needs_new_cc_config_for_update(old_template, old_version, new_template, new_version): """ Given two templates and their respective versions, return True if a new cookiecutter config needs to be obtained from the user """ if old_template != new_template: return True else: ret...
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Given two templates and their respective versions, return True if a new cookiecutter config needs to be obtained from the user
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python
valid
arviz-devs/arviz
arviz/stats/stats.py
https://github.com/arviz-devs/arviz/blob/d04d8da07f029fd2931f48d2f7f324cf393e5277/arviz/stats/stats.py#L564-L611
def _gpdfit(x): """Estimate the parameters for the Generalized Pareto Distribution (GPD). Empirical Bayes estimate for the parameters of the generalized Pareto distribution given the data. Parameters ---------- x : array sorted 1D data array Returns ------- k : float ...
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Estimate the parameters for the Generalized Pareto Distribution (GPD). Empirical Bayes estimate for the parameters of the generalized Pareto distribution given the data. Parameters ---------- x : array sorted 1D data array Returns ------- k : float estimated shape para...
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python
train
eaton-lab/toytree
toytree/etemini.py
https://github.com/eaton-lab/toytree/blob/0347ed2098acc5f707fadf52a0ecd411a6d1859c/toytree/etemini.py#L1333-L1347
def sort_descendants(self, attr="name"): """ This function sort the branches of a given tree by considerening node names. After the tree is sorted, nodes are labeled using ascendent numbers. This can be used to ensure that nodes in a tree with the same node names are always ...
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This function sort the branches of a given tree by considerening node names. After the tree is sorted, nodes are labeled using ascendent numbers. This can be used to ensure that nodes in a tree with the same node names are always labeled in the same way. Note that if duplicated names ar...
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python
train
J535D165/recordlinkage
recordlinkage/adapters.py
https://github.com/J535D165/recordlinkage/blob/87a5f4af904e0834047cd07ff1c70146b1e6d693/recordlinkage/adapters.py#L57-L78
def _prob_match(self, features): """Compute match probabilities. Parameters ---------- features : numpy.ndarray The data to train the model on. Returns ------- numpy.ndarray The match probabilties. """ # compute the proba...
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Compute match probabilities. Parameters ---------- features : numpy.ndarray The data to train the model on. Returns ------- numpy.ndarray The match probabilties.
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python
train