repo stringlengths 7 54 | path stringlengths 4 192 | url stringlengths 87 284 | code stringlengths 78 104k | code_tokens list | docstring stringlengths 1 46.9k | docstring_tokens list | language stringclasses 1
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kyuupichan/aiorpcX | aiorpcx/jsonrpc.py | https://github.com/kyuupichan/aiorpcX/blob/707c989ed1c67ac9a40cd20b0161b1ce1f4d7db0/aiorpcx/jsonrpc.py#L284-L287 | def request_message(cls, item, request_id):
'''Convert an RPCRequest item to a message.'''
assert isinstance(item, Request)
return cls.encode_payload(cls.request_payload(item, request_id)) | [
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materialsproject/pymatgen | pymatgen/analysis/gb/grain.py | https://github.com/materialsproject/pymatgen/blob/4ca558cf72f8d5f8a1f21dfdfc0181a971c186da/pymatgen/analysis/gb/grain.py#L110-L122 | def copy(self):
"""
Convenience method to get a copy of the structure, with options to add
site properties.
Returns:
A copy of the Structure, with optionally new site_properties and
optionally sanitized.
"""
return GrainBoundary(self.lattice, self... | [
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monarch-initiative/dipper | dipper/models/Genotype.py | https://github.com/monarch-initiative/dipper/blob/24cc80db355bbe15776edc5c7b41e0886959ba41/dipper/models/Genotype.py#L56-L77 | def addAllele(
self, allele_id, allele_label, allele_type=None,
allele_description=None):
"""
Make an allele object.
If no allele_type is added, it will default to a geno:allele
:param allele_id: curie for allele (required)
:param allele_label: label for a... | [
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:param allele_label: label for allele (required)
:param allele_type: id for an allele type (optional,
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isislovecruft/python-gnupg | pretty_bad_protocol/_meta.py | https://github.com/isislovecruft/python-gnupg/blob/784571449032e811587249743e183fc5e908a673/pretty_bad_protocol/_meta.py#L352-L360 | def default_preference_list(self, prefs):
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"""
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fermiPy/fermipy | fermipy/srcmap_utils.py | https://github.com/fermiPy/fermipy/blob/9df5e7e3728307fd58c5bba36fd86783c39fbad4/fermipy/srcmap_utils.py#L380-L403 | def delete_source_map(srcmap_file, names, logger=None):
"""Delete a map from a binned analysis source map file if it exists.
Parameters
----------
srcmap_file : str
Path to the source map file.
names : list
List of HDU keys of source maps to be deleted.
"""
with fits.open(sr... | [
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srcmap_file : str
Path to the source map file.
names : list
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QuantEcon/QuantEcon.py | quantecon/game_theory/repeated_game.py | https://github.com/QuantEcon/QuantEcon.py/blob/26a66c552f2a73967d7efb6e1f4b4c4985a12643/quantecon/game_theory/repeated_game.py#L306-L366 | def _find_C(C, points, vertices, equations, extended_payoff, IC, tol):
"""
Find all the intersection points between the current convex hull
and the two IC constraints. It is done by iterating simplex
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Parameters
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C : ndarray(float, ndim=2)
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Clinical-Genomics/housekeeper | housekeeper/store/models.py | https://github.com/Clinical-Genomics/housekeeper/blob/a7d10d327dc9f06274bdef5504ed1b9413f2c8c1/housekeeper/store/models.py#L52-L54 | def relative_root_dir(self):
"""Build the relative root dir path for the bundle version."""
return Path(self.bundle.name) / str(self.created_at.date()) | [
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viniciuschiele/flask-apscheduler | flask_apscheduler/auth.py | https://github.com/viniciuschiele/flask-apscheduler/blob/cc52c39e1948c4e8de5da0d01db45f1779f61997/flask_apscheduler/auth.py#L82-L102 | def get_authorization(self):
"""
Get the username and password for Basic authentication header.
:return Authentication: The authentication data or None if it is not present or invalid.
"""
auth = get_authorization_header()
if not auth:
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annoviko/pyclustering | pyclustering/nnet/sync.py | https://github.com/annoviko/pyclustering/blob/98aa0dd89fd36f701668fb1eb29c8fb5662bf7d0/pyclustering/nnet/sync.py#L258-L299 | def allocate_phase_matrix(self, grid_width = None, grid_height = None, iteration = None):
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@brief Returns 2D matrix of phase values of oscillators at the specified iteration of simulation.
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mozilla-iot/webthing-python | webthing/property.py | https://github.com/mozilla-iot/webthing-python/blob/65d467c89ed79d0bbc42b8b3c8f9e5a320edd237/webthing/property.py#L91-L98 | def set_value(self, value):
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Set the current value of the property.
value -- the value to set
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self.validate_value(value)
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awslabs/aws-cfn-template-flip | cfn_flip/__init__.py | https://github.com/awslabs/aws-cfn-template-flip/blob/837576bea243e3f5efb0a20b84802371272e2d33/cfn_flip/__init__.py#L63-L73 | def to_yaml(template, clean_up=False, long_form=False):
"""
Assume the input is JSON and convert to YAML
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data = load_json(template)
if clean_up:
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chaosmail/python-fs | fs/fs.py | https://github.com/chaosmail/python-fs/blob/2567922ced9387e327e65f3244caff3b7af35684/fs/fs.py#L175-L180 | def listdirs(path='.'):
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cuihantao/andes | andes/filters/card.py | https://github.com/cuihantao/andes/blob/7067898d4f26ce7534e968b8486c4aa8fe3a511a/andes/filters/card.py#L26-L110 | def read(file, system):
"""Parse an ANDES card file into internal variables"""
try:
fid = open(file, 'r')
raw_file = fid.readlines()
except IOError:
print('* IOError while reading input card file.')
return
ret_dict = dict()
ret_dict['outfile'] = file.split('.')[0].lo... | [
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transifex/transifex-python-library | txlib/api/resources.py | https://github.com/transifex/transifex-python-library/blob/9fea86b718973de35ccca6d54bd1f445c9632406/txlib/api/resources.py#L27-L32 | def retrieve_content(self):
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path = self._construct_path_to_source_content()
res = self._http.get(path)
self._populated_fields['content'] = res['content']
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woolfson-group/isambard | isambard/add_ons/filesystem.py | https://github.com/woolfson-group/isambard/blob/ebc33b48a28ad217e18f93b910dfba46e6e71e07/isambard/add_ons/filesystem.py#L131-L179 | def fastas(self, download=False):
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If True, downloads the fasta file from the PDB.
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markovmodel/msmtools | msmtools/analysis/dense/pcca.py | https://github.com/markovmodel/msmtools/blob/54dc76dd2113a0e8f3d15d5316abab41402941be/msmtools/analysis/dense/pcca.py#L194-L219 | def _fill_matrix(rot_crop_matrix, eigvectors):
"""
Helper function for opt_soft
"""
(x, y) = rot_crop_matrix.shape
row_sums = np.sum(rot_crop_matrix, axis=1)
row_sums = np.reshape(row_sums, (x, 1))
# add -row_sums as leftmost column to rot_crop_matrix
rot_crop_matrix = np.concatenate... | [
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biocore/deblur | deblur/workflow.py | https://github.com/biocore/deblur/blob/4b4badccdbac8fe9d8f8b3f1349f3700e31b5d7b/deblur/workflow.py#L532-L570 | def remove_chimeras_denovo_from_seqs(seqs_fp, working_dir, threads=1):
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Parameters
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seqs_fp: string
file path to FASTA input sequence file
output_fp: string
file path to store chimera-free results
threads... | [
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genesluder/python-agiletixapi | agiletixapi/utils.py | https://github.com/genesluder/python-agiletixapi/blob/a7a3907414cd5623f4542b03cb970862368a894a/agiletixapi/utils.py#L79-L83 | def to_pascal_case(s):
"""Transform underscore separated string to pascal case
"""
return re.sub(r'(?!^)_([a-zA-Z])', lambda m: m.group(1).upper(), s.capitalize()) | [
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mandiant/ioc_writer | ioc_writer/ioc_api.py | https://github.com/mandiant/ioc_writer/blob/712247f3a10bdc2584fa18ac909fc763f71df21a/ioc_writer/ioc_api.py#L694-L704 | def get_i_text(node):
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Get the text for an Indicator node.
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Alignak-monitoring/alignak | alignak/objects/service.py | https://github.com/Alignak-monitoring/alignak/blob/f3c145207e83159b799d3714e4241399c7740a64/alignak/objects/service.py#L1346-L1356 | def apply_inheritance(self):
""" For all items and templates inherit properties and custom
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:return: None
"""
super(Services, self).apply_inheritance()
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saltstack/salt | salt/states/cron.py | https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/states/cron.py#L451-L669 | def file(name,
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mulkieran/justbases | src/justbases/_rationals.py | https://github.com/mulkieran/justbases/blob/dd52ff4b3d11609f54b2673599ee4eeb20f9734f/src/justbases/_rationals.py#L562-L589 | def _increment(sign, integer_part, non_repeating_part, base):
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Return an increment radix.
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:param integer_part: the integer part
:type integer_part: list of int
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Kortemme-Lab/klab | klab/bio/uniprot.py | https://github.com/Kortemme-Lab/klab/blob/6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b/klab/bio/uniprot.py#L892-L915 | def get_common_PDB_IDs(pdb_id, cache_dir = None, exception_on_failure = True):
'''This function takes a PDB ID, maps it to UniProt ACCs, then returns the common set of PDB IDs related to those ACCs.
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opencobra/memote | memote/support/consistency_helpers.py | https://github.com/opencobra/memote/blob/276630fcd4449fb7b914186edfd38c239e7052df/memote/support/consistency_helpers.py#L216-L233 | def get_internals(model):
"""
Return non-boundary reactions and their metabolites.
Boundary reactions are unbalanced by their nature. They are excluded here
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borntyping/python-riemann-client | riemann_client/command.py | https://github.com/borntyping/python-riemann-client/blob/3e181d90bdf685afd21c1ec5ee20e6840b011ea5/riemann_client/command.py#L131-L134 | def query(transport, query):
"""Query the Riemann server"""
with CommandLineClient(transport) as client:
echo_event(client.query(query)) | [
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apache/spark | python/pyspark/sql/functions.py | https://github.com/apache/spark/blob/618d6bff71073c8c93501ab7392c3cc579730f0b/python/pyspark/sql/functions.py#L1761-L1770 | def regexp_replace(str, pattern, replacement):
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>>> df.select(regexp_replace('str', r'(\d+)', '--').alias('d')).collect()
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pyviz/holoviews | holoviews/plotting/mpl/element.py | https://github.com/pyviz/holoviews/blob/ae0dd2f3de448b0ca5e9065aabd6ef8d84c7e655/holoviews/plotting/mpl/element.py#L527-L537 | def update_handles(self, key, axis, element, ranges, style):
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self.teardown_handles()
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fhs/pyhdf | pyhdf/SD.py | https://github.com/fhs/pyhdf/blob/dbdc1810a74a38df50dcad81fe903e239d2b388d/pyhdf/SD.py#L2959-L3018 | def getscale(self):
"""Obtain the scale values along a dimension.
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PmagPy/PmagPy | programs/pmag_gui.py | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/pmag_gui.py#L765-L782 | def on_menu_exit(self, event):
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Exit the GUI
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self.help_window.Destroy()
except:
pass
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apache/spark | python/pyspark/sql/functions.py | https://github.com/apache/spark/blob/618d6bff71073c8c93501ab7392c3cc579730f0b/python/pyspark/sql/functions.py#L314-L329 | def approx_count_distinct(col, rsd=None):
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chaimleib/intervaltree | intervaltree/node.py | https://github.com/chaimleib/intervaltree/blob/ffb2b1667f8b832e89324a75a175be8440504c9d/intervaltree/node.py#L216-L223 | def discard(self, interval):
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neurodata/ndio | ndio/convert/tiff.py | https://github.com/neurodata/ndio/blob/792dd5816bc770b05a3db2f4327da42ff6253531/ndio/convert/tiff.py#L98-L133 | def load_tiff_multipage(tiff_filename, dtype='float32'):
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cherrypy/cheroot | cheroot/ssl/pyopenssl.py | https://github.com/cherrypy/cheroot/blob/2af3b1798d66da697957480d3a8b4831a405770b/cheroot/ssl/pyopenssl.py#L270-L278 | def get_context(self):
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sethmlarson/virtualbox-python | virtualbox/library.py | https://github.com/sethmlarson/virtualbox-python/blob/706c8e3f6e3aee17eb06458e73cbb4bc2d37878b/virtualbox/library.py#L9585-L9628 | def set_final_values(self, enabled, v_box_values, extra_config_values):
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tritemio/PyBroMo | pybromo/psflib.py | https://github.com/tritemio/PyBroMo/blob/b75f82a4551ff37e7c7a7e6954c536451f3e6d06/pybromo/psflib.py#L132-L137 | def load_PSFLab_file(fname):
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if os.path.exists(fname) or os.path.exists(fname + '.mat'):
return loadmat(fname)['data']
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archman/beamline | beamline/lattice.py | https://github.com/archman/beamline/blob/417bc5dc13e754bc89d246427984590fced64d07/beamline/lattice.py#L580-L589 | def getElementCtrlConf(self, elementKw):
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PyPSA/PyPSA | pypsa/geo.py | https://github.com/PyPSA/PyPSA/blob/46954b1b3c21460550f7104681517065279a53b7/pypsa/geo.py#L36-L83 | def haversine(a0,a1):
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Compute the distance in km between two sets of points in long/lat.
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UDST/pandana | pandana/network.py | https://github.com/UDST/pandana/blob/961a7ef8d3b0144b190cb60bbd61845fca6fb314/pandana/network.py#L495-L581 | def nearest_pois(self, distance, category, num_pois=1, max_distance=None,
imp_name=None, include_poi_ids=False):
"""
Find the distance to the nearest pois from each source node. The
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saltstack/salt | salt/utils/asynchronous.py | https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/utils/asynchronous.py#L15-L24 | def current_ioloop(io_loop):
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A context manager that will set the current ioloop to io_loop for the context
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ValvePython/steam | steam/util/binary.py | https://github.com/ValvePython/steam/blob/2de1364c47598410b572114e6129eab8fff71d5b/steam/util/binary.py#L51-L61 | def unpack(self, format_text):
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cltrudeau/django-flowr | flowr/models.py | https://github.com/cltrudeau/django-flowr/blob/d077b90376ede33721db55ff29e08b8a16ed17ae/flowr/models.py#L226-L236 | def ancestors(self):
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numenta/nupic | src/nupic/database/connection.py | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/database/connection.py#L643-L656 | def _getCommonSteadyDBArgsDict():
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pycontribs/pyrax | pyrax/cloudmonitoring.py | https://github.com/pycontribs/pyrax/blob/9ddfd5064b3a292d7337906f3b2d5dce95b50b99/pyrax/cloudmonitoring.py#L1321-L1327 | def update_alarm(self, entity, alarm, criteria=None, disabled=False,
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gtalarico/airtable-python-wrapper | airtable/airtable.py | https://github.com/gtalarico/airtable-python-wrapper/blob/48b2d806178085b52a31817571e5a1fc3dce4045/airtable/airtable.py#L420-L445 | def update_by_field(self, field_name, field_value, fields, typecast=False, **options):
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Updates the first record to match field name and value.
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acrisci/i3ipc-python | i3ipc/i3ipc.py | https://github.com/acrisci/i3ipc-python/blob/243d353434cdd2a93a9ca917c6bbf07b865c39af/i3ipc/i3ipc.py#L534-L549 | def get_bar_config(self, bar_id=None):
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MillionIntegrals/vel | vel/util/intepolate.py | https://github.com/MillionIntegrals/vel/blob/e0726e1f63742b728966ccae0c8b825ea0ba491a/vel/util/intepolate.py#L48-L50 | def interpolate_series(start, end, steps, how='linear'):
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Qiskit/qiskit-terra | qiskit/visualization/text.py | https://github.com/Qiskit/qiskit-terra/blob/d4f58d903bc96341b816f7c35df936d6421267d1/qiskit/visualization/text.py#L473-L481 | def dump(self, filename, encoding="utf8"):
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raiden-network/raiden | raiden/transfer/merkle_tree.py | https://github.com/raiden-network/raiden/blob/407ba15c72074e9de88771d6b9661ff4dc36bef5/raiden/transfer/merkle_tree.py#L16-L33 | def hash_pair(first: Keccak256, second: Optional[Keccak256]) -> Keccak256:
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oz123/blogit | blogit/blogit.py | https://github.com/oz123/blogit/blob/15b94969fa43aaf8dc677a8184b144ae8c0f7700/blogit/blogit.py#L349-L354 | def render_archive(entries):
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fabioz/PyDev.Debugger | pydevd_attach_to_process/winappdbg/textio.py | https://github.com/fabioz/PyDev.Debugger/blob/ed9c4307662a5593b8a7f1f3389ecd0e79b8c503/pydevd_attach_to_process/winappdbg/textio.py#L1799-L1814 | def __logfile_error(self, e):
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rueckstiess/mtools | mtools/mlogfilter/filters/logline_filter.py | https://github.com/rueckstiess/mtools/blob/a6a22910c3569c0c8a3908660ca218a4557e4249/mtools/mlogfilter/filters/logline_filter.py#L124-L152 | def accept(self, logevent):
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Qiskit/qiskit-terra | qiskit/providers/basicaer/basicaertools.py | https://github.com/Qiskit/qiskit-terra/blob/d4f58d903bc96341b816f7c35df936d6421267d1/qiskit/providers/basicaer/basicaertools.py#L127-L175 | def _einsum_matmul_index_helper(gate_indices, number_of_qubits):
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tensorflow/tensor2tensor | tensor2tensor/layers/common_layers.py | https://github.com/tensorflow/tensor2tensor/blob/272500b6efe353aeb638d2745ed56e519462ca31/tensor2tensor/layers/common_layers.py#L1385-L1416 | def sepconv_relu_sepconv(inputs,
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roboogle/gtkmvc3 | gtkmvco/gtkmvc3/adapters/containers.py | https://github.com/roboogle/gtkmvc3/blob/63405fd8d2056be26af49103b13a8d5e57fe4dff/gtkmvco/gtkmvc3/adapters/containers.py#L165-L177 | def update_widget(self, idx=None):
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androguard/androguard | androguard/core/bytecodes/apk.py | https://github.com/androguard/androguard/blob/984c0d981be2950cf0451e484f7b0d4d53bc4911/androguard/core/bytecodes/apk.py#L1082-L1093 | def get_main_activity(self):
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saltstack/salt | salt/states/selinux.py | https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/states/selinux.py#L318-L396 | def fcontext_policy_present(name, sel_type, filetype='a', sel_user=None, sel_level=None):
'''
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jilljenn/tryalgo | tryalgo/dfs.py | https://github.com/jilljenn/tryalgo/blob/89a4dd9655e7b6b0a176f72b4c60d0196420dfe1/tryalgo/dfs.py#L66-L82 | def dfs_grid_recursive(grid, i, j, mark='X', free='.'):
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ubyssey/dispatch | dispatch/api/views.py | https://github.com/ubyssey/dispatch/blob/8da6084fe61726f20e9cf675190480cfc45ee764/dispatch/api/views.py#L76-L112 | def get_queryset(self):
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CEA-COSMIC/ModOpt | modopt/base/transform.py | https://github.com/CEA-COSMIC/ModOpt/blob/019b189cb897cbb4d210c44a100daaa08468830c/modopt/base/transform.py#L16-L60 | def cube2map(data_cube, layout):
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data_cube : np.ndarray
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bcbio/bcbio-nextgen | bcbio/variation/vcfutils.py | https://github.com/bcbio/bcbio-nextgen/blob/6a9348c0054ccd5baffd22f1bb7d0422f6978b20/bcbio/variation/vcfutils.py#L326-L335 | def _check_samples_nodups(fnames):
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"""
counts = defaultdict(int)
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iotile/coretools | transport_plugins/native_ble/iotile_transport_native_ble/connection_manager.py | https://github.com/iotile/coretools/blob/2d794f5f1346b841b0dcd16c9d284e9bf2f3c6ec/transport_plugins/native_ble/iotile_transport_native_ble/connection_manager.py#L491-L524 | def _force_disconnect_action(self, action):
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Args:
action (ConnectionAction): the action object describing what we are
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conn_key = action.data['id']
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SoCo/SoCo | dev_tools/analyse_ws.py | https://github.com/SoCo/SoCo/blob/671937e07d7973b78c0cbee153d4f3ad68ec48c6/dev_tools/analyse_ws.py#L434-L489 | def __build_option_parser():
""" Build the option parser for this script """
description = """
Tool to analyze Wireshark dumps of Sonos traffic.
The files that are input to this script must be in the
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chaoss/grimoirelab-elk | grimoire_elk/enriched/enrich.py | https://github.com/chaoss/grimoirelab-elk/blob/64e08b324b36d9f6909bf705145d6451c8d34e65/grimoire_elk/enriched/enrich.py#L867-L872 | def get_sh_ids(self, identity, backend_name):
""" Return the Sorting Hat id and uuid for an identity """
# Convert the dict to tuple so it is hashable
identity_tuple = tuple(identity.items())
sh_ids = self.__get_sh_ids_cache(identity_tuple, backend_name)
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ActivisionGameScience/assertpy | assertpy/assertpy.py | https://github.com/ActivisionGameScience/assertpy/blob/08d799cdb01f9a25d3e20672efac991c7bc26d79/assertpy/assertpy.py#L653-L663 | def matches(self, pattern):
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NoviceLive/intellicoder | intellicoder/utils.py | https://github.com/NoviceLive/intellicoder/blob/6cac5ebfce65c370dbebe47756a1789b120ef982/intellicoder/utils.py#L181-L186 | def read_files(filenames, with_name=False):
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text = [read_file(filename) for filename in filenames]
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glue-viz/glue-vispy-viewers | glue_vispy_viewers/extern/vispy/visuals/transforms/linear.py | https://github.com/glue-viz/glue-vispy-viewers/blob/54a4351d98c1f90dfb1a557d1b447c1f57470eea/glue_vispy_viewers/extern/vispy/visuals/transforms/linear.py#L181-L190 | def move(self, move):
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python/core-workflow | blurb/blurb.py | https://github.com/python/core-workflow/blob/b93c76195f6db382cfcefee334380fb4c68d4e21/blurb/blurb.py#L1204-L1584 | def split(*, released=False):
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Split the current Misc/NEWS into a zillion little blurb files.
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pandas-dev/pandas | pandas/core/series.py | https://github.com/pandas-dev/pandas/blob/9feb3ad92cc0397a04b665803a49299ee7aa1037/pandas/core/series.py#L523-L538 | def compress(self, condition, *args, **kwargs):
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Return selected slices of an array along given axis as a Series.
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numpy.ndarray.compress
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alexa/alexa-skills-kit-sdk-for-python | ask-sdk-core/ask_sdk_core/utils/viewport.py | https://github.com/alexa/alexa-skills-kit-sdk-for-python/blob/097b6406aa12d5ca0b825b00c936861b530cbf39/ask-sdk-core/ask_sdk_core/utils/viewport.py#L147-L246 | def get_viewport_profile(request_envelope):
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quantopian/zipline | zipline/pipeline/loaders/earnings_estimates.py | https://github.com/quantopian/zipline/blob/77ad15e6dc4c1cbcdc133653bac8a63fc704f7fe/zipline/pipeline/loaders/earnings_estimates.py#L1294-L1336 | def merge_split_adjustments_with_overwrites(
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Merge split adjustments with the dict containing overwrites.
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pre : dict[str -> dict[int -> list]]
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calmjs/calmjs | src/calmjs/dist.py | https://github.com/calmjs/calmjs/blob/b9b407c2b6a7662da64bccba93bb8d92e7a5fafd/src/calmjs/dist.py#L219-L227 | def read_egginfo_json(pkg_name, filename=DEFAULT_JSON, working_set=None):
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ECESeniorDesign/lazy_record | lazy_record/repo.py | https://github.com/ECESeniorDesign/lazy_record/blob/929d3cc7c2538b0f792365c0d2b0e0d41084c2dd/lazy_record/repo.py#L93-L99 | def _standard_items(self, restrictions):
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names = ["{}.{} == ?".format(pair[0], pair[1])
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kervi/kervi-core | kervi/displays/__init__.py | https://github.com/kervi/kervi-core/blob/3c1e3c8a17a7b4d085d8a28b99180ff2a96b0e23/kervi/displays/__init__.py#L69-L83 | def add_page(self, page, default = True):
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Add a display page to the display.
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osrg/ryu | ryu/lib/packet/packet_utils.py | https://github.com/osrg/ryu/blob/6f906e72c92e10bd0264c9b91a2f7bb85b97780c/ryu/lib/packet/packet_utils.py#L106-L138 | def fletcher_checksum(data, offset):
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StackStorm/pybind | pybind/nos/v6_0_2f/rbridge_id/crypto/__init__.py | https://github.com/StackStorm/pybind/blob/44c467e71b2b425be63867aba6e6fa28b2cfe7fb/pybind/nos/v6_0_2f/rbridge_id/crypto/__init__.py#L127-L148 | def _set_ca(self, v, load=False):
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thespacedoctor/tastic | tastic/tastic.py | https://github.com/thespacedoctor/tastic/blob/a0a16cf329a50057906ac3f696bb60b6fcee25e0/tastic/tastic.py#L1197-L1247 | def add_note(
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ivbeg/qddate | qddate/qdparser.py | https://github.com/ivbeg/qddate/blob/f7730610611f2509ab264bc8d77a902742daf08c/qddate/qdparser.py#L79-L122 | def match(self, text, noprefix=False):
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CGATOxford/UMI-tools | umi_tools/sam_methods.py | https://github.com/CGATOxford/UMI-tools/blob/c4b5d84aac391d59916d294f8f4f8f5378abcfbe/umi_tools/sam_methods.py#L520-L558 | def get_gene_count_tab(infile,
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bc_getter: method to get umi (plus optionally, cell barcode) from
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GoogleCloudPlatform/datastore-ndb-python | ndb/context.py | https://github.com/GoogleCloudPlatform/datastore-ndb-python/blob/cf4cab3f1f69cd04e1a9229871be466b53729f3f/ndb/context.py#L908-L928 | def call_on_commit(self, callback):
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click-contrib/click-repl | click_repl/__init__.py | https://github.com/click-contrib/click-repl/blob/2d78dc520eb0bb5b813bad3b72344edbd22a7f4e/click_repl/__init__.py#L146-L165 | def bootstrap_prompt(prompt_kwargs, group):
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Bootstrap prompt_toolkit kwargs or use user defined values.
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prompt_kwargs = prompt_kwargs or {}
defaults = {
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titusjan/argos | argos/repo/baserti.py | https://github.com/titusjan/argos/blob/20d0a3cae26c36ea789a5d219c02ca7df21279dd/argos/repo/baserti.py#L60-L66 | def createFromFileName(cls, fileName):
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# See https://julien.danjou.info/blog/2013/guide-python-static-class-abstract-methods
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saltstack/salt | salt/modules/openbsdpkg.py | https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/openbsdpkg.py#L57-L98 | def list_pkgs(versions_as_list=False, **kwargs):
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List the packages currently installed as a dict::
{'<package_name>': '<version>'}
CLI Example:
.. code-block:: bash
salt '*' pkg.list_pkgs
'''
versions_as_list = salt.utils.data.is_true(versions_as_list)
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bohea/sanic-limiter | sanic_limiter/extension.py | https://github.com/bohea/sanic-limiter/blob/54c9fc4a3a3f1a9bb69367262637d07701ae5694/sanic_limiter/extension.py#L116-L147 | def init_app(self, app):
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self.enabled = app.config.setdefault(C.ENABLED, True)
self._swallow_errors = app.config.setdefault(
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HPENetworking/PYHPEIMC | pyhpeimc/plat/alarms.py | https://github.com/HPENetworking/PYHPEIMC/blob/4fba31827573587e03a6233c7db60f188038c8e5/pyhpeimc/plat/alarms.py#L102-L138 | def get_alarms(username, auth, url):
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materialsproject/pymatgen | pymatgen/optimization/linear_assignment_numpy.py | https://github.com/materialsproject/pymatgen/blob/4ca558cf72f8d5f8a1f21dfdfc0181a971c186da/pymatgen/optimization/linear_assignment_numpy.py#L187-L244 | def _build_tree(self):
"""
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self._x and self._y
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kata198/python-subprocess2 | subprocess2/__init__.py | https://github.com/kata198/python-subprocess2/blob/8544b0b651d8e14de9fdd597baa704182e248b01/subprocess2/__init__.py#L63-L85 | def waitUpTo(self, timeoutSeconds, pollInterval=DEFAULT_POLL_INTERVAL):
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Azure/azure-storage-python | azure-storage-queue/azure/storage/queue/queueservice.py | https://github.com/Azure/azure-storage-python/blob/52327354b192cbcf6b7905118ec6b5d57fa46275/azure-storage-queue/azure/storage/queue/queueservice.py#L894-L929 | def delete_message(self, queue_name, message_id, pop_receipt, timeout=None):
'''
Deletes the specified message.
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houtianze/bypy | bypy/bypy.py | https://github.com/houtianze/bypy/blob/c59b6183e2fca45f11138bbcdec6247449b2eaad/bypy/bypy.py#L2922-L2937 | def cleancache(self):
''' Usage: cleancache - remove invalid entries from hash cache file'''
if os.path.exists(self.__hashcachepath):
try:
# backup first
backup = self.__hashcachepath + '.lastclean'
shutil.copy(self.__hashcachepath, backup)
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klmitch/bark | bark/format.py | https://github.com/klmitch/bark/blob/6e0e002d55f01fee27e3e45bb86e30af1bfeef36/bark/format.py#L381-L393 | def append_text(self, text):
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inveniosoftware-attic/invenio-utils | invenio_utils/filedownload.py | https://github.com/inveniosoftware-attic/invenio-utils/blob/9a1c6db4e3f1370901f329f510480dd8df188296/invenio_utils/filedownload.py#L253-L295 | def download_local_file(filename, download_to_file):
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Copies a local file to Invenio's temporary directory.
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pip-services3-python/pip-services3-components-python | pip_services3_components/log/CachedLogger.py | https://github.com/pip-services3-python/pip-services3-components-python/blob/1de9c1bb544cf1891111e9a5f5d67653f62c9b52/pip_services3_components/log/CachedLogger.py#L55-L77 | def _write(self, level, correlation_id, ex, message):
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SKA-ScienceDataProcessor/integration-prototype | sip/execution_control/docker_api/sip_docker_swarm/docker_swarm_client.py | https://github.com/SKA-ScienceDataProcessor/integration-prototype/blob/8c8006de6ad71dcd44114b0338780738079c87d4/sip/execution_control/docker_api/sip_docker_swarm/docker_swarm_client.py#L310-L330 | def get_node_list(self) -> list:
"""Get a list of nodes.
Only the manager nodes can retrieve all the nodes
Returns:
list, all the ids of the nodes in swarm
"""
# Initialising empty list
nodes = []
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Only the manager nodes can retrieve all the nodes
Returns:
list, all the ids of the nodes in swarm | [
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expfactory/expfactory | expfactory/database/filesystem.py | https://github.com/expfactory/expfactory/blob/27ce6cc93e17231df8a8024f18e631336afd3501/expfactory/database/filesystem.py#L188-L199 | def validate_token(self, token):
'''retrieve a subject based on a token. Valid means we return a participant
invalid means we return None
'''
# A token that is finished or revoked is not valid
subid = None
if not token.endswith(('finished','revoked')):
subid = self.generate_subid(toke... | [
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klen/starter | starter/core.py | https://github.com/klen/starter/blob/24a65c10d4ac5a9ca8fc1d8b3d54b3fb13603f5f/starter/core.py#L42-L50 | def make_directory(path):
""" Create directory if that not exists. """
try:
makedirs(path)
logging.debug('Directory created: {0}'.format(path))
except OSError as e:
if e.errno != errno.EEXIST:
raise | [
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scheibler/khard | khard/khard.py | https://github.com/scheibler/khard/blob/0f69430c2680f1ff5f073a977a3c5b753b96cc17/khard/khard.py#L921-L982 | def phone_subcommand(search_terms, vcard_list, parsable):
"""Print a phone application friendly contact table.
:param search_terms: used as search term to filter the contacts before
printing
:type search_terms: str
:param vcard_list: the vcards to search for matching entries which should
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streamlink/streamlink | src/streamlink_cli/main.py | https://github.com/streamlink/streamlink/blob/c8ed1daff14ac03195870238b9b900c1109dd5c1/src/streamlink_cli/main.py#L504-L534 | def format_valid_streams(plugin, streams):
"""Formats a dict of streams.
Filters out synonyms and displays them next to
the stream they point to.
Streams are sorted according to their quality
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"""
delimiter = ", "
validstreams = []
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DarkEnergySurvey/ugali | ugali/isochrone/model.py | https://github.com/DarkEnergySurvey/ugali/blob/21e890b4117fc810afb6fb058e8055d564f03382/ugali/isochrone/model.py#L389-L444 | def absolute_magnitude_martin(self, richness=1, steps=1e4, n_trials=1000, mag_bright=None, mag_faint=23., alpha=0.32, seed=None):
"""
Calculate the absolute magnitude (Mv) of the isochrone using
the prescription of Martin et al. 2008.
ADW: Seems like the faint and bright limits ... | [
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ADW: Seems like the faint and bright limits should depend on the survey maglim?
Parameters:
-----------
richness : Isochrone nomalization factor
steps : N... | [
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ambitioninc/rabbitmq-admin | rabbitmq_admin/api.py | https://github.com/ambitioninc/rabbitmq-admin/blob/ff65054115f19991da153f0e4f4e45e526545fea/rabbitmq_admin/api.py#L476-L488 | def get_policy_for_vhost(self, vhost, name):
"""
Get a specific policy for a vhost.
:param vhost: The virtual host the policy is for
:type vhost: str
:param name: The name of the policy
:type name: str
"""
return self._api_get('/api/policies/{0}/{1}'.form... | [
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senaite/senaite.core | bika/lims/browser/analysisservice.py | https://github.com/senaite/senaite.core/blob/7602ce2ea2f9e81eb34e20ce17b98a3e70713f85/bika/lims/browser/analysisservice.py#L131-L140 | def analysis_log_view(self):
"""Get the log view of the requested analysis
"""
service = self.get_analysis_or_service()
if not self.can_view_logs_of(service):
return None
view = api.get_view("auditlog", context=service, request=self.request)
view.update()
... | [
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alimanfoo/csvvalidator | csvvalidator.py | https://github.com/alimanfoo/csvvalidator/blob/50a86eefdc549c48f65a91a5c0a66099010ee65d/csvvalidator.py#L591-L629 | def _apply_value_predicates(self, i, r,
summarize=False,
report_unexpected_exceptions=True,
context=None):
"""Apply value predicates on the given record `r`."""
for field_name, predicate, code, message, modu... | [
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] | python | valid |
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