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rameshg87/pyremotevbox
pyremotevbox/ZSI/wstools/Utility.py
https://github.com/rameshg87/pyremotevbox/blob/123dffff27da57c8faa3ac1dd4c68b1cf4558b1a/pyremotevbox/ZSI/wstools/Utility.py#L251-L260
def GetSOAPEnvUri(self, version): """Return the appropriate SOAP envelope uri for a given human-friendly SOAP version string (e.g. '1.1').""" attrname = 'NS_SOAP_ENV_%s' % join(split(version, '.'), '_') value = getattr(self, attrname, None) if value is not None: re...
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Return the appropriate SOAP envelope uri for a given human-friendly SOAP version string (e.g. '1.1').
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python
train
crazy-canux/arguspy
arguspy/http_requests.py
https://github.com/crazy-canux/arguspy/blob/e9486b5df61978a990d56bf43de35f3a4cdefcc3/arguspy/http_requests.py#L61-L67
def close(self): """Close the http/https connect.""" try: self.response.close() self.logger.debug("close connect succeed.") except Exception as e: self.unknown("close connect error: %s" % e)
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Close the http/https connect.
[ "Close", "the", "http", "/", "https", "connect", "." ]
python
valid
logston/py3s3
py3s3/storage.py
https://github.com/logston/py3s3/blob/1910ca60c53a53d839d6f7b09c05b555f3bfccf4/py3s3/storage.py#L261-L274
def _get_content_type(self, file): """ Return content type of file. If file does not have a content type, make a guess. """ if file.mimetype: return file.mimetype # get file extension _, extension = os.path.splitext(file.name) extension = exte...
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Return content type of file. If file does not have a content type, make a guess.
[ "Return", "content", "type", "of", "file", ".", "If", "file", "does", "not", "have", "a", "content", "type", "make", "a", "guess", "." ]
python
train
biocore/burrito
burrito/util.py
https://github.com/biocore/burrito/blob/3b1dcc560431cc2b7a4856b99aafe36d32082356/burrito/util.py#L399-L421
def _get_base_command(self): """ Returns the full command string input_arg: the argument to the command which represents the input to the program, this will be a string, either representing input or a filename to get input from tI""" command_parts = ...
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Returns the full command string input_arg: the argument to the command which represents the input to the program, this will be a string, either representing input or a filename to get input from tI
[ "Returns", "the", "full", "command", "string" ]
python
train
cthoyt/ols-client
src/ols_client/client.py
https://github.com/cthoyt/ols-client/blob/8c6bb54888675652d25324184967392d00d128fc/src/ols_client/client.py#L93-L107
def suggest(self, name, ontology=None): """Suggest terms from an optional list of ontologies :param str name: :param list[str] ontology: :rtype: dict .. seealso:: https://www.ebi.ac.uk/ols/docs/api#_suggest_term """ params = {'q': name} if ontology: ...
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Suggest terms from an optional list of ontologies :param str name: :param list[str] ontology: :rtype: dict .. seealso:: https://www.ebi.ac.uk/ols/docs/api#_suggest_term
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python
test
googleapis/oauth2client
oauth2client/_helpers.py
https://github.com/googleapis/oauth2client/blob/50d20532a748f18e53f7d24ccbe6647132c979a9/oauth2client/_helpers.py#L182-L202
def parse_unique_urlencoded(content): """Parses unique key-value parameters from urlencoded content. Args: content: string, URL-encoded key-value pairs. Returns: dict, The key-value pairs from ``content``. Raises: ValueError: if one of the keys is repeated. """ urlenco...
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Parses unique key-value parameters from urlencoded content. Args: content: string, URL-encoded key-value pairs. Returns: dict, The key-value pairs from ``content``. Raises: ValueError: if one of the keys is repeated.
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python
valid
nschloe/matplotlib2tikz
matplotlib2tikz/line2d.py
https://github.com/nschloe/matplotlib2tikz/blob/ac5daca6f38b834d757f6c6ae6cc34121956f46b/matplotlib2tikz/line2d.py#L147-L182
def _mpl_marker2pgfp_marker(data, mpl_marker, marker_face_color): """Translates a marker style of matplotlib to the corresponding style in PGFPlots. """ # try default list try: pgfplots_marker = _MP_MARKER2PGF_MARKER[mpl_marker] except KeyError: pass else: if (marker_...
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Translates a marker style of matplotlib to the corresponding style in PGFPlots.
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python
train
madsbk/lrcloud
lrcloud/__main__.py
https://github.com/madsbk/lrcloud/blob/8d99be3e1abdf941642e9a1c86b7d775dc373c0b/lrcloud/__main__.py#L271-L369
def cmd_normal(args): """Normal procedure: * Pull from cloud (if necessary) * Run Lightroom * Push to cloud """ logging.info("cmd_normal") (lcat, ccat) = (args.local_catalog, args.cloud_catalog) (lmeta, cmeta) = ("%s.lrcloud"%lcat, "%s.lrcloud"%ccat) if not isfile(lcat)...
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Normal procedure: * Pull from cloud (if necessary) * Run Lightroom * Push to cloud
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python
valid
ucsb-cs-education/hairball
hairball/plugins/blocks.py
https://github.com/ucsb-cs-education/hairball/blob/c6da8971f8a34e88ce401d36b51431715e1dff5b/hairball/plugins/blocks.py#L67-L71
def finalize(self): """Output the number of instances that contained dead code.""" if self.total_instances > 1: print('{} of {} instances contained dead code.' .format(self.dead_code_instances, self.total_instances))
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Output the number of instances that contained dead code.
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python
train
Becksteinlab/GromacsWrapper
gromacs/core.py
https://github.com/Becksteinlab/GromacsWrapper/blob/d4f9a8cb6f48292732cf7c7e4ef4a6d2ccbc51b9/gromacs/core.py#L301-L322
def transform_args(self, *args, **kwargs): """Transform arguments and return them as a list suitable for Popen.""" options = [] for option,value in kwargs.items(): if not option.startswith('-'): # heuristic for turning key=val pairs into options # (fai...
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Transform arguments and return them as a list suitable for Popen.
[ "Transform", "arguments", "and", "return", "them", "as", "a", "list", "suitable", "for", "Popen", "." ]
python
valid
Dentosal/python-sc2
sc2/client.py
https://github.com/Dentosal/python-sc2/blob/608bd25f04e89d39cef68b40101d8e9a8a7f1634/sc2/client.py#L197-L230
async def query_pathings(self, zipped_list: List[List[Union[Unit, Point2, Point3]]]) -> List[Union[float, int]]: """ Usage: await self.query_pathings([[unit1, target2], [unit2, target2]]) -> returns [distance1, distance2] Caution: returns 0 when path not found Might merge this function w...
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Usage: await self.query_pathings([[unit1, target2], [unit2, target2]]) -> returns [distance1, distance2] Caution: returns 0 when path not found Might merge this function with the function above
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python
train
kronok/django-google-analytics-reporter
google_analytics_reporter/tracking.py
https://github.com/kronok/django-google-analytics-reporter/blob/cca5fb0920ec68cfe03069cedf53fb4c6440cc11/google_analytics_reporter/tracking.py#L53-L64
def get_payload(self, *args, **kwargs): """Receive all passed in args, kwargs, and combine them together with any required params""" if not kwargs: kwargs = self.default_params else: kwargs.update(self.default_params) for item in args: if isinstance(it...
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Receive all passed in args, kwargs, and combine them together with any required params
[ "Receive", "all", "passed", "in", "args", "kwargs", "and", "combine", "them", "together", "with", "any", "required", "params" ]
python
train
mrcagney/gtfstk
gtfstk/shapes.py
https://github.com/mrcagney/gtfstk/blob/c91494e6fefc02523889655a0dc92d1c0eee8d03/gtfstk/shapes.py#L213-L247
def geometrize_shapes( shapes: DataFrame, *, use_utm: bool = False ) -> DataFrame: """ Given a GTFS shapes DataFrame, convert it to a GeoPandas GeoDataFrame and return the result. The result has a ``'geometry'`` column of WGS84 LineStrings instead of the columns ``'shape_pt_sequence'``, ``'shape...
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Given a GTFS shapes DataFrame, convert it to a GeoPandas GeoDataFrame and return the result. The result has a ``'geometry'`` column of WGS84 LineStrings instead of the columns ``'shape_pt_sequence'``, ``'shape_pt_lon'``, ``'shape_pt_lat'``, and ``'shape_dist_traveled'``. If ``use_utm``, then use loc...
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python
train
Jarn/jarn.viewdoc
jarn/viewdoc/viewdoc.py
https://github.com/Jarn/jarn.viewdoc/blob/59ae82fd1658889c41096c1d8c08dcb1047dc349/jarn/viewdoc/viewdoc.py#L463-L507
def parse_options(self, args, depth=0): """Parse command line options. """ style_names = tuple(self.defaults.known_styles) style_opts = tuple('--'+x for x in style_names) try: options, remaining_args = getopt.gnu_getopt(args, 'b:c:hls:v', ('help', 'st...
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Parse command line options.
[ "Parse", "command", "line", "options", "." ]
python
train
knagra/farnsworth
base/redirects.py
https://github.com/knagra/farnsworth/blob/1b6589f0d9fea154f0a1e2231ed906764ed26d26/base/redirects.py#L23-L32
def red_home(request, message=None): ''' Convenience function for redirecting users who don't have access to a page to the home page. Parameters: request - the request in the calling function message - a message from the caller function ''' if message: messages.add_message(re...
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Convenience function for redirecting users who don't have access to a page to the home page. Parameters: request - the request in the calling function message - a message from the caller function
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python
train
saltstack/salt
salt/utils/master.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/utils/master.py#L625-L635
def secure(self): ''' secure the sockets for root-only access ''' log.debug('ConCache securing sockets') if os.path.exists(self.cache_sock): os.chmod(self.cache_sock, 0o600) if os.path.exists(self.update_sock): os.chmod(self.update_sock, 0o600) ...
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secure the sockets for root-only access
[ "secure", "the", "sockets", "for", "root", "-", "only", "access" ]
python
train
googledatalab/pydatalab
google/datalab/storage/_bucket.py
https://github.com/googledatalab/pydatalab/blob/d9031901d5bca22fe0d5925d204e6698df9852e1/google/datalab/storage/_bucket.py#L215-L233
def contains(self, name): """Checks if the specified bucket exists. Args: name: the name of the bucket to lookup. Returns: True if the bucket exists; False otherwise. Raises: Exception if there was an error requesting information about the bucket. """ try: self._api.buck...
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Checks if the specified bucket exists. Args: name: the name of the bucket to lookup. Returns: True if the bucket exists; False otherwise. Raises: Exception if there was an error requesting information about the bucket.
[ "Checks", "if", "the", "specified", "bucket", "exists", "." ]
python
train
onicagroup/runway
runway/util.py
https://github.com/onicagroup/runway/blob/3f3549ec3bf6e39b9f27d9738a1847f3a4369e7f/runway/util.py#L165-L179
def fix_windows_command_list(commands): # type: (List[str]) -> List[str] """Return command list with working Windows commands. npm on windows is npm.cmd, which will blow up subprocess.check_call(['npm', '...']) Similar issues arise when calling python apps like pipenv that will have a windows-...
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Return command list with working Windows commands. npm on windows is npm.cmd, which will blow up subprocess.check_call(['npm', '...']) Similar issues arise when calling python apps like pipenv that will have a windows-only suffix applied to them
[ "Return", "command", "list", "with", "working", "Windows", "commands", "." ]
python
train
gitpython-developers/GitPython
git/refs/log.py
https://github.com/gitpython-developers/GitPython/blob/1f66e25c25cde2423917ee18c4704fff83b837d1/git/refs/log.py#L239-L252
def to_file(self, filepath): """Write the contents of the reflog instance to a file at the given filepath. :param filepath: path to file, parent directories are assumed to exist""" lfd = LockedFD(filepath) assure_directory_exists(filepath, is_file=True) fp = lfd.open(write=True,...
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Write the contents of the reflog instance to a file at the given filepath. :param filepath: path to file, parent directories are assumed to exist
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python
train
gwastro/pycbc
pycbc/io/record.py
https://github.com/gwastro/pycbc/blob/7a64cdd104d263f1b6ea0b01e6841837d05a4cb3/pycbc/io/record.py#L1822-L1825
def spin_sx(self): """Returns the x-component of the spin of the secondary mass.""" return conversions.secondary_spin(self.mass1, self.mass2, self.spin1x, self.spin2x)
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Returns the x-component of the spin of the secondary mass.
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python
train
twoolie/NBT
nbt/region.py
https://github.com/twoolie/NBT/blob/b06dd6cc8117d2788da1d8416e642d58bad45762/nbt/region.py#L618-L707
def write_blockdata(self, x, z, data, compression=COMPRESSION_ZLIB): """ Compress the data, write it to file, and add pointers in the header so it can be found as chunk(x,z). """ if compression == COMPRESSION_GZIP: # Python 3.1 and earlier do not yet support `data = ...
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Compress the data, write it to file, and add pointers in the header so it can be found as chunk(x,z).
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python
train
rfarley3/Kibana
kibana/mapping.py
https://github.com/rfarley3/Kibana/blob/3df1e13be18edfb39ec173d8d2bbe9e90be61022/kibana/mapping.py#L181-L192
def get_index_mappings(self, index): """Converts all index's doc_types to .kibana""" fields_arr = [] for (key, val) in iteritems(index): # self.pr_dbg("\tdoc_type: %s" % key) doc_mapping = self.get_doc_type_mappings(index[key]) # self.pr_dbg("\tdoc_mapping: %s...
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Converts all index's doc_types to .kibana
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python
train
gccxml/pygccxml
pygccxml/declarations/pattern_parser.py
https://github.com/gccxml/pygccxml/blob/2b1efbb9e37ceb2ae925c7f3ce1570f476db9e1e/pygccxml/declarations/pattern_parser.py#L203-L210
def normalize(self, decl_string, arg_separator=None): """implementation details""" if not self.has_pattern(decl_string): return decl_string name, args = self.split(decl_string) for i, arg in enumerate(args): args[i] = self.normalize(arg) return self.join(n...
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implementation details
[ "implementation", "details" ]
python
train
Shizmob/pydle
pydle/client.py
https://github.com/Shizmob/pydle/blob/7ec7d65d097318ed0bcdc5d8401470287d8c7cf7/pydle/client.py#L365-L373
async def handle_forever(self): """ Handle data forever. """ while self.connected: data = await self.connection.recv() if not data: if self.connected: await self.disconnect(expected=False) break await self.on_data(da...
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Handle data forever.
[ "Handle", "data", "forever", "." ]
python
train
wkentaro/pytorch-fcn
torchfcn/ext/fcn.berkeleyvision.org/siftflow_layers.py
https://github.com/wkentaro/pytorch-fcn/blob/97189cbccb2c9b8bd776b356a1fd4b6c03f67d79/torchfcn/ext/fcn.berkeleyvision.org/siftflow_layers.py#L107-L122
def load_label(self, idx, label_type=None): """ Load label image as 1 x height x width integer array of label indices. The leading singleton dimension is required by the loss. """ if label_type == 'semantic': label = scipy.io.loadmat('{}/SemanticLabels/spatial_envelop...
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Load label image as 1 x height x width integer array of label indices. The leading singleton dimension is required by the loss.
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python
train
JarryShaw/PyPCAPKit
src/utilities/validations.py
https://github.com/JarryShaw/PyPCAPKit/blob/c7f0da9aebc2cf210bf8f8b912f7d3cbb98ca10e/src/utilities/validations.py#L66-L73
def number_check(*args, func=None): """Check if arguments are numbers.""" func = func or inspect.stack()[2][3] for var in args: if not isinstance(var, numbers.Number): name = type(var).__name__ raise DigitError( f'Function {func} expected number, {name} got in...
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Check if arguments are numbers.
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python
train
fossasia/knittingpattern
knittingpattern/Instruction.py
https://github.com/fossasia/knittingpattern/blob/8e608896b0ab82fea1ca9fbfa2b4ee023d8c8027/knittingpattern/Instruction.py#L260-L270
def transfer_to_row(self, new_row): """Transfer this instruction to a new row. :param knittingpattern.Row.Row new_row: the new row the instruction is in. """ if new_row != self._row: index = self.get_index_in_row() if index is not None: ...
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Transfer this instruction to a new row. :param knittingpattern.Row.Row new_row: the new row the instruction is in.
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python
valid
roclark/sportsreference
sportsreference/nba/teams.py
https://github.com/roclark/sportsreference/blob/ea0bae432be76450e137671d2998eb38f962dffd/sportsreference/nba/teams.py#L114-L177
def dataframe(self): """ Returns a pandas DataFrame containing all other class properties and values. The index for the DataFrame is the string abbreviation of the team, such as 'DET'. """ fields_to_include = { 'abbreviation': self.abbreviation, 'a...
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Returns a pandas DataFrame containing all other class properties and values. The index for the DataFrame is the string abbreviation of the team, such as 'DET'.
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python
train
pjuren/pyokit
src/pyokit/io/genomeAlignment.py
https://github.com/pjuren/pyokit/blob/fddae123b5d817daa39496183f19c000d9c3791f/src/pyokit/io/genomeAlignment.py#L297-L306
def _build_index(maf_strm, ref_spec): """Build an index for a MAF genome alig file and return StringIO of it.""" idx_strm = StringIO.StringIO() bound_iter = functools.partial(genome_alignment_iterator, reference_species=ref_spec) hash_func = JustInTimeGenomeAlignmentBlock.build_...
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Build an index for a MAF genome alig file and return StringIO of it.
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python
train
geelweb/geelweb-django-contactform
src/geelweb/django/contactform/views.py
https://github.com/geelweb/geelweb-django-contactform/blob/9c5934e0877f61c3ddeca48569836703e1d6344a/src/geelweb/django/contactform/views.py#L12-L29
def contact(request): """Displays the contact form and sends the email""" form = ContactForm(request.POST or None) if form.is_valid(): subject = form.cleaned_data['subject'] message = form.cleaned_data['message'] sender = form.cleaned_data['sender'] cc_myself = form.cleaned_d...
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Displays the contact form and sends the email
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python
valid
mrahnis/drapery
drapery/cli/drape.py
https://github.com/mrahnis/drapery/blob/c0c0906fb5ff846cf591cb9fe8a9eaee68e8820c/drapery/cli/drape.py#L21-L67
def cli(source_f, raster_f, output, verbose): """ Converts 2D geometries to 3D using GEOS sample through fiona. \b Example: drape point.shp elevation.tif -o point_z.shp """ with fiona.open(source_f, 'r') as source: source_driver = source.driver source_crs = source.crs ...
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Converts 2D geometries to 3D using GEOS sample through fiona. \b Example: drape point.shp elevation.tif -o point_z.shp
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python
train
zomux/deepy
deepy/networks/network.py
https://github.com/zomux/deepy/blob/090fbad22a08a809b12951cd0d4984f5bd432698/deepy/networks/network.py#L166-L179
def setup_variables(self): """ Set up variables. """ if self.input_tensor: if type(self.input_tensor) == int: x = dim_to_var(self.input_tensor, name="x") else: x = self.input_tensor else: x = T.matrix('x') ...
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Set up variables.
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python
test
Fizzadar/pydocs
pydocs/__init__.py
https://github.com/Fizzadar/pydocs/blob/72713201dc4cf40335f9c3d380c9111b23c2c38b/pydocs/__init__.py#L16-L26
def _parse_module_list(module_list): '''Loop through all the modules and parse them.''' for module_meta in module_list: name = module_meta['module'] # Import & parse module module = import_module(name) output = parse_module(module) # Assign to meta.content modul...
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Loop through all the modules and parse them.
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python
train
openstack/quark
quark/drivers/ironic_driver.py
https://github.com/openstack/quark/blob/1112e6a66917d3e98e44cb7b33b107fd5a74bb2e/quark/drivers/ironic_driver.py#L290-L367
def create_port(self, context, network_id, port_id, **kwargs): """Create a port. :param context: neutron api request context. :param network_id: neutron network id. :param port_id: neutron port id. :param kwargs: required keys - device_id: neutron port device_id (ins...
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Create a port. :param context: neutron api request context. :param network_id: neutron network id. :param port_id: neutron port id. :param kwargs: required keys - device_id: neutron port device_id (instance_id) instance_node_id: nova hypervisor ho...
[ "Create", "a", "port", "." ]
python
valid
secdev/scapy
scapy/automaton.py
https://github.com/secdev/scapy/blob/3ffe757c184017dd46464593a8f80f85abc1e79a/scapy/automaton.py#L129-L134
def _timeout_thread(self, remain): """Timeout before releasing every thing, if nothing was returned""" time.sleep(remain) if not self._ended: self._ended = True self._release_all()
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Timeout before releasing every thing, if nothing was returned
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python
train
PyCQA/astroid
astroid/brain/brain_builtin_inference.py
https://github.com/PyCQA/astroid/blob/e0a298df55b15abcb77c2a93253f5ab7be52d0fb/astroid/brain/brain_builtin_inference.py#L121-L147
def register_builtin_transform(transform, builtin_name): """Register a new transform function for the given *builtin_name*. The transform function must accept two parameters, a node and an optional context. """ def _transform_wrapper(node, context=None): result = transform(node, context=co...
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Register a new transform function for the given *builtin_name*. The transform function must accept two parameters, a node and an optional context.
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python
train
Phyks/libbmc
libbmc/doi.py
https://github.com/Phyks/libbmc/blob/9ef1a29d2514157d1edd6c13ecbd61b07ae9315e/libbmc/doi.py#L188-L209
def get_bibtex(doi): """ Get a BibTeX entry for a given DOI. .. note:: Adapted from https://gist.github.com/jrsmith3/5513926. :param doi: The canonical DOI to get BibTeX from. :returns: A BibTeX string or ``None``. >>> get_bibtex('10.1209/0295-5075/111/40005') '@article{Verney_20...
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Get a BibTeX entry for a given DOI. .. note:: Adapted from https://gist.github.com/jrsmith3/5513926. :param doi: The canonical DOI to get BibTeX from. :returns: A BibTeX string or ``None``. >>> get_bibtex('10.1209/0295-5075/111/40005') '@article{Verney_2015,\\n\\tdoi = {10.1209/0295-5075...
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python
train
decryptus/sonicprobe
sonicprobe/libs/pworkerpool.py
https://github.com/decryptus/sonicprobe/blob/72f73f3a40d2982d79ad68686e36aa31d94b76f8/sonicprobe/libs/pworkerpool.py#L170-L178
def set_max_workers(self, nb): """ Set the maximum workers to create. """ self.count_lock.acquire() self.shared['max_workers'] = nb if self.shared['workers'] > self.shared['max_workers']: self.kill(self.shared['workers'] - self.shared['max_workers']) s...
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Set the maximum workers to create.
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python
train
geomet/geomet
geomet/wkt.py
https://github.com/geomet/geomet/blob/b82d7118113ab723751eba3de5df98c368423c2b/geomet/wkt.py#L57-L100
def dumps(obj, decimals=16): """ Dump a GeoJSON-like `dict` to a WKT string. """ try: geom_type = obj['type'] exporter = _dumps_registry.get(geom_type) if exporter is None: _unsupported_geom_type(geom_type) # Check for empty cases if geom_type == 'Ge...
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Dump a GeoJSON-like `dict` to a WKT string.
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python
train
quantopian/pyfolio
pyfolio/perf_attrib.py
https://github.com/quantopian/pyfolio/blob/712716ab0cdebbec9fabb25eea3bf40e4354749d/pyfolio/perf_attrib.py#L419-L468
def plot_factor_contribution_to_perf( perf_attrib_data, ax=None, title='Cumulative common returns attribution', ): """ Plot each factor's contribution to performance. Parameters ---------- perf_attrib_data : pd.DataFrame df with factors, common returns, and specific ...
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Plot each factor's contribution to performance. Parameters ---------- perf_attrib_data : pd.DataFrame df with factors, common returns, and specific returns as columns, and datetimes as index - Example: momentum reversal common_returns specific_returns ...
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python
valid
Stewori/pytypes
pytypes/typechecker.py
https://github.com/Stewori/pytypes/blob/b814d38709e84c0e0825caf8b721c20eb5a8ab3b/pytypes/typechecker.py#L1167-L1172
def check_argument_types(cllable = None, call_args = None, clss = None, caller_level = 0): """Can be called from within a function or method to apply typechecking to the arguments that were passed in by the caller. Checking is applied w.r.t. type hints of the function or method hosting the call to check_arg...
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Can be called from within a function or method to apply typechecking to the arguments that were passed in by the caller. Checking is applied w.r.t. type hints of the function or method hosting the call to check_argument_types.
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python
train
gabrielelanaro/chemview
chemview/viewer.py
https://github.com/gabrielelanaro/chemview/blob/2c9768dd23db99e59e27adff2a953bb8ee795fa3/chemview/viewer.py#L312-L335
def cartoon(self, cmap=None): '''Display a protein secondary structure as a pymol-like cartoon representation. :param cmap: is a dictionary that maps the secondary type (H=helix, E=sheet, C=coil) to a hexadecimal color (0xffffff for white) ''' # Parse secondary struc...
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Display a protein secondary structure as a pymol-like cartoon representation. :param cmap: is a dictionary that maps the secondary type (H=helix, E=sheet, C=coil) to a hexadecimal color (0xffffff for white)
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python
train
mitsei/dlkit
dlkit/json_/grading/managers.py
https://github.com/mitsei/dlkit/blob/445f968a175d61c8d92c0f617a3c17dc1dc7c584/dlkit/json_/grading/managers.py#L1718-L1735
def get_gradebook_hierarchy_design_session(self, proxy): """Gets the session designing gradebook hierarchies. arg: proxy (osid.proxy.Proxy): a proxy return: (osid.grading.GradebookHierarchyDesignSession) - a ``GradebookHierarchyDesignSession`` raise: NullArgument - `...
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Gets the session designing gradebook hierarchies. arg: proxy (osid.proxy.Proxy): a proxy return: (osid.grading.GradebookHierarchyDesignSession) - a ``GradebookHierarchyDesignSession`` raise: NullArgument - ``proxy`` is ``null`` raise: OperationFailed - unable to com...
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python
train
rigetti/grove
grove/measurements/estimation.py
https://github.com/rigetti/grove/blob/dc6bf6ec63e8c435fe52b1e00f707d5ce4cdb9b3/grove/measurements/estimation.py#L37-L55
def get_rotation_program(pauli_term: PauliTerm) -> Program: """ Generate a rotation program so that the pauli term is diagonal. :param pauli_term: The Pauli term used to generate diagonalizing one-qubit rotations. :return: The rotation program. """ meas_basis_change = Program() for index, g...
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Generate a rotation program so that the pauli term is diagonal. :param pauli_term: The Pauli term used to generate diagonalizing one-qubit rotations. :return: The rotation program.
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python
train
ioos/compliance-checker
compliance_checker/acdd.py
https://github.com/ioos/compliance-checker/blob/ee89c27b0daade58812489a2da3aa3b6859eafd9/compliance_checker/acdd.py#L566-L582
def verify_convention_version(self, ds): """ Verify that the version in the Conventions field is correct """ try: for convention in getattr(ds, "Conventions", '').replace(' ', '').split(','): if convention == 'ACDD-' + self._cc_spec_version: ...
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Verify that the version in the Conventions field is correct
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python
train
mitsei/dlkit
dlkit/json_/commenting/sessions.py
https://github.com/mitsei/dlkit/blob/445f968a175d61c8d92c0f617a3c17dc1dc7c584/dlkit/json_/commenting/sessions.py#L2654-L2681
def get_book_nodes(self, book_id, ancestor_levels, descendant_levels, include_siblings): """Gets a portion of the hierarchy for the given book. arg: book_id (osid.id.Id): the ``Id`` to query arg: ancestor_levels (cardinal): the maximum number of ancestor levels to include....
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Gets a portion of the hierarchy for the given book. arg: book_id (osid.id.Id): the ``Id`` to query arg: ancestor_levels (cardinal): the maximum number of ancestor levels to include. A value of 0 returns no parents in the node. arg: descendant_levels (car...
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python
train
joshspeagle/dynesty
dynesty/nestedsamplers.py
https://github.com/joshspeagle/dynesty/blob/9e482aafeb5cf84bedb896fa6f07a761d917983e/dynesty/nestedsamplers.py#L346-L362
def update(self, pointvol): """Update the bounding ellipsoid using the current set of live points.""" # Check if we should use the provided pool for updating. if self.use_pool_update: pool = self.pool else: pool = None # Update the ellipsoid. ...
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Update the bounding ellipsoid using the current set of live points.
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python
train
Cadene/pretrained-models.pytorch
pretrainedmodels/models/polynet.py
https://github.com/Cadene/pretrained-models.pytorch/blob/021d97897c9aa76ec759deff43d341c4fd45d7ba/pretrainedmodels/models/polynet.py#L461-L480
def polynet(num_classes=1000, pretrained='imagenet'): """PolyNet architecture from the paper 'PolyNet: A Pursuit of Structural Diversity in Very Deep Networks' https://arxiv.org/abs/1611.05725 """ if pretrained: settings = pretrained_settings['polynet'][pretrained] assert num_classes...
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PolyNet architecture from the paper 'PolyNet: A Pursuit of Structural Diversity in Very Deep Networks' https://arxiv.org/abs/1611.05725
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python
train
inasafe/inasafe
safe/common/parameters/default_value_parameter_widget.py
https://github.com/inasafe/inasafe/blob/831d60abba919f6d481dc94a8d988cc205130724/safe/common/parameters/default_value_parameter_widget.py#L77-L97
def get_parameter(self): """Obtain list parameter object from the current widget state. :returns: A DefaultValueParameter from the current state of widget :rtype: DefaultValueParameter """ radio_button_checked_id = self.input_button_group.checkedId() # No radio button ch...
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Obtain list parameter object from the current widget state. :returns: A DefaultValueParameter from the current state of widget :rtype: DefaultValueParameter
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python
train
tomislater/RandomWords
random_words/random_words.py
https://github.com/tomislater/RandomWords/blob/601aa48732d3c389f4c17ba0ed98ffe0e4821d78/random_words/random_words.py#L48-L55
def load_nicknames(self, file): """ Load dict from file for random nicknames. :param str file: filename """ with open(os.path.join(main_dir, file + '.dat'), 'r') as f: self.nicknames = json.load(f)
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Load dict from file for random nicknames. :param str file: filename
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python
train
tensorflow/lucid
lucid/optvis/objectives.py
https://github.com/tensorflow/lucid/blob/d1a1e2e4fd4be61b89b8cba20dc425a5ae34576e/lucid/optvis/objectives.py#L165-L170
def channel(layer, n_channel, batch=None): """Visualize a single channel""" if batch is None: return lambda T: tf.reduce_mean(T(layer)[..., n_channel]) else: return lambda T: tf.reduce_mean(T(layer)[batch, ..., n_channel])
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Visualize a single channel
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python
train
kentwait/nxsim
nxsim/simulation.py
https://github.com/kentwait/nxsim/blob/88090d8099e574bc6fd1d24734cfa205ecce4c1d/nxsim/simulation.py#L57-L85
def run_trial(self, trial_id=0): """Run a single trial of the simulation Parameters ---------- trial_id : int """ # Set-up trial environment and graph self.env = NetworkEnvironment(self.G.copy(), initial_time=0, **self.environment_params) # self.G = self....
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Run a single trial of the simulation Parameters ---------- trial_id : int
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python
train
bitesofcode/projexui
projexui/widgets/xviewwidget/xviewprofiletoolbar.py
https://github.com/bitesofcode/projexui/blob/f18a73bec84df90b034ca69b9deea118dbedfc4d/projexui/widgets/xviewwidget/xviewprofiletoolbar.py#L329-L339
def profiles(self): """ Returns a list of profiles for this toolbar. :return <projexui.widgets.xviewwidget.XViewProfile> """ output = [] for act in self.actions(): if ( isinstance(act, XViewProfileAction) ): output.append(...
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Returns a list of profiles for this toolbar. :return <projexui.widgets.xviewwidget.XViewProfile>
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python
train
jazzband/django-model-utils
model_utils/tracker.py
https://github.com/jazzband/django-model-utils/blob/d557c4253312774a7c2f14bcd02675e9ac2ea05f/model_utils/tracker.py#L270-L277
def has_changed(self, field): """Returns ``True`` if field has changed from currently saved value""" if not self.instance.pk: return True elif field in self.saved_data: return self.previous(field) != self.get_field_value(field) else: raise FieldError('...
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Returns ``True`` if field has changed from currently saved value
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python
train
mlperf/training
image_classification/tensorflow/official/resnet/resnet_run_loop.py
https://github.com/mlperf/training/blob/1c6ae725a81d15437a2b2df05cac0673fde5c3a4/image_classification/tensorflow/official/resnet/resnet_run_loop.py#L130-L218
def learning_rate_with_decay( batch_size, batch_denom, num_images, boundary_epochs, decay_rates, base_lr=0.1, enable_lars=False): """Get a learning rate that decays step-wise as training progresses. Args: batch_size: the number of examples processed in each training batch. batch_denom: this value w...
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Get a learning rate that decays step-wise as training progresses. Args: batch_size: the number of examples processed in each training batch. batch_denom: this value will be used to scale the base learning rate. `0.1 * batch size` is divided by this number, such that when batch_denom == batch_size...
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python
train
matthiask/django-cte-forest
cte_forest/query.py
https://github.com/matthiask/django-cte-forest/blob/7bff29d69eddfcf214e9cf61647c91d28655619c/cte_forest/query.py#L227-L246
def get_compiler(self, using=None, connection=None): """ Overrides the Query method get_compiler in order to return an instance of the above custom compiler. """ # Copy the body of this method from Django except the final # return statement. We will ignore code coverage for t...
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Overrides the Query method get_compiler in order to return an instance of the above custom compiler.
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python
train
pyGrowler/Growler
growler/http/response.py
https://github.com/pyGrowler/Growler/blob/90c923ff204f28b86a01d741224987a22f69540f/growler/http/response.py#L377-L396
def stringify(self, use_bytes=False): """ Returns representation of headers as a valid HTTP header string. This is called by __str__. Args: use_bytes (bool): Returns a bytes object instead of a str. """ def _str_value(value): if isinstance(value, ...
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Returns representation of headers as a valid HTTP header string. This is called by __str__. Args: use_bytes (bool): Returns a bytes object instead of a str.
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python
train
wglass/lighthouse
lighthouse/log/cli.py
https://github.com/wglass/lighthouse/blob/f4ce6550895acc31e433ede0c05d366718a3ffe5/lighthouse/log/cli.py#L39-L57
def create_thread_color_cycle(): """ Generates a never-ending cycle of colors to choose from for individual threads. If color is not available, a cycle that repeats None every time is returned instead. """ if not color_available: return itertools.cycle([None]) return itertools....
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Generates a never-ending cycle of colors to choose from for individual threads. If color is not available, a cycle that repeats None every time is returned instead.
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python
train
requests/requests-oauthlib
requests_oauthlib/oauth2_session.py
https://github.com/requests/requests-oauthlib/blob/800976faab3b827a42fa1cb80f13fcc03961d2c9/requests_oauthlib/oauth2_session.py#L175-L363
def fetch_token( self, token_url, code=None, authorization_response=None, body="", auth=None, username=None, password=None, method="POST", force_querystring=False, timeout=None, headers=None, verify=True, pro...
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Generic method for fetching an access token from the token endpoint. If you are using the MobileApplicationClient you will want to use `token_from_fragment` instead of `fetch_token`. The current implementation enforces the RFC guidelines. :param token_url: Token endpoint URL, must use...
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python
valid
inveniosoftware/invenio-migrator
invenio_migrator/legacy/utils.py
https://github.com/inveniosoftware/invenio-migrator/blob/6902c6968a39b747d15e32363f43b7dffe2622c2/invenio_migrator/legacy/utils.py#L60-L68
def init_app_context(): """Initialize app context for Invenio 2.x.""" try: from invenio.base.factory import create_app app = create_app() app.test_request_context('/').push() app.preprocess_request() except ImportError: pass
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Initialize app context for Invenio 2.x.
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python
test
standage/tag
tag/feature.py
https://github.com/standage/tag/blob/94686adf57115cea1c5235e99299e691f80ba10b/tag/feature.py#L468-L489
def get_attribute(self, attrkey, as_string=False, as_list=False): """ Get the value of an attribute. By default, returns a string for ID and attributes with a single value, and a list of strings for attributes with multiple values. The `as_string` and `as_list` options can be us...
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Get the value of an attribute. By default, returns a string for ID and attributes with a single value, and a list of strings for attributes with multiple values. The `as_string` and `as_list` options can be used to force the function to return values as a string (comma-separated in case...
[ "Get", "the", "value", "of", "an", "attribute", "." ]
python
train
thomasdelaet/python-velbus
velbus/controller.py
https://github.com/thomasdelaet/python-velbus/blob/af2f8af43f1a24bf854eff9f3126fd7b5c41b3dd/velbus/controller.py#L167-L173
def sync_clock(self): """ This will send all the needed messages to sync the cloc """ self.send(velbus.SetRealtimeClock()) self.send(velbus.SetDate()) self.send(velbus.SetDaylightSaving())
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This will send all the needed messages to sync the cloc
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python
train
sorgerlab/indra
indra/sources/biopax/processor.py
https://github.com/sorgerlab/indra/blob/79a70415832c5702d7a820c7c9ccc8e25010124b/indra/sources/biopax/processor.py#L58-L69
def save_model(self, file_name=None): """Save the BioPAX model object in an OWL file. Parameters ---------- file_name : Optional[str] The name of the OWL file to save the model in. """ if file_name is None: logger.error('Missing file name') ...
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Save the BioPAX model object in an OWL file. Parameters ---------- file_name : Optional[str] The name of the OWL file to save the model in.
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python
train
tgbugs/pyontutils
pyontutils/hierarchies.py
https://github.com/tgbugs/pyontutils/blob/3d913db29c177db39151592909a4f56170ef8b35/pyontutils/hierarchies.py#L43-L45
def tcsort(item): # FIXME SUCH WOW SO INEFFICIENT O_O """ get len of transitive closure assume type items is tree... """ return len(item[1]) + sum(tcsort(kv) for kv in item[1].items())
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get len of transitive closure assume type items is tree...
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python
train
manjitkumar/drf-url-filters
filters/validations.py
https://github.com/manjitkumar/drf-url-filters/blob/ebac358729bcd9aa70537247b2ccd6005f5678c1/filters/validations.py#L13-L32
def IntegerLike(msg=None): ''' Checks whether a value is: - int, or - long, or - float without a fractional part, or - str or unicode composed only of digits ''' def fn(value): if not any([ isinstance(value, numbers.Integral), (isinstance(v...
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Checks whether a value is: - int, or - long, or - float without a fractional part, or - str or unicode composed only of digits
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python
train
varikin/Tigre
tigre/tigre.py
https://github.com/varikin/Tigre/blob/6ffac1de52f087cf92cbf368997b336c35a0e3c0/tigre/tigre.py#L87-L106
def sync_folder(self, path, bucket): """Syncs a local directory with an S3 bucket. Currently does not delete files from S3 that are not in the local directory. path: The path to the directory to sync to S3 bucket: The name of the bucket on S3 """ bucket = self.conn...
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Syncs a local directory with an S3 bucket. Currently does not delete files from S3 that are not in the local directory. path: The path to the directory to sync to S3 bucket: The name of the bucket on S3
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python
test
The-Politico/politico-civic-geography
geography/models/division.py
https://github.com/The-Politico/politico-civic-geography/blob/032b3ee773b50b65cfe672f230dda772df0f89e0/geography/models/division.py#L70-L82
def save(self, *args, **kwargs): """ **uid**: :code:`division:{parentuid}_{levelcode}-{code}` """ slug = "{}:{}".format(self.level.uid, self.code) if self.parent: self.uid = "{}_{}".format(self.parent.uid, slug) else: self.uid = slug self.s...
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**uid**: :code:`division:{parentuid}_{levelcode}-{code}`
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python
train
dade-ai/snipy
snipy/io/fileutil.py
https://github.com/dade-ai/snipy/blob/408520867179f99b3158b57520e2619f3fecd69b/snipy/io/fileutil.py#L261-L268
def listfolder(p): """ generator of list folder in the path. folders only """ for entry in scandir.scandir(p): if entry.is_dir(): yield entry.name
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generator of list folder in the path. folders only
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python
valid
gplepage/gvar
examples/pendulum-clock.py
https://github.com/gplepage/gvar/blob/d6671697319eb6280de3793c9a1c2b616c6f2ae0/examples/pendulum-clock.py#L46-L56
def find_period(y, Tapprox): """ Find oscillation period of y(t). Parameter Tapprox is the approximate period. The code finds the time between 0.7 * Tapprox and 1.3 * Tapprox where y(t)[1] = d/dt theta(t) vanishes. This is the period. """ def dtheta_dt(t): """ vanishes when dtheta/dt = ...
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Find oscillation period of y(t). Parameter Tapprox is the approximate period. The code finds the time between 0.7 * Tapprox and 1.3 * Tapprox where y(t)[1] = d/dt theta(t) vanishes. This is the period.
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python
train
materialsproject/pymatgen
pymatgen/io/abinit/flows.py
https://github.com/materialsproject/pymatgen/blob/4ca558cf72f8d5f8a1f21dfdfc0181a971c186da/pymatgen/io/abinit/flows.py#L633-L646
def iflat_tasks_wti(self, status=None, op="==", nids=None): """ Generator to iterate over all the tasks of the `Flow`. Yields: (task, work_index, task_index) If status is not None, only the tasks whose status satisfies the condition (task.status op status) are selec...
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Generator to iterate over all the tasks of the `Flow`. Yields: (task, work_index, task_index) If status is not None, only the tasks whose status satisfies the condition (task.status op status) are selected status can be either one of the flags defined in the :class:`Task` c...
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python
train
T-002/pycast
pycast/common/matrix.py
https://github.com/T-002/pycast/blob/8a53505c6d8367e0ea572e8af768e80b29e1cc41/pycast/common/matrix.py#L236-L251
def to_multi_dim_timeseries(self): """Return a TimeSeries with the values of :py:obj:`self` The index of the row is used for the timestamp :return: Return a new MultiDimensionalTimeSeries with the values of the Matrix :rtype: MultiDimensionalTimeSeries ...
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Return a TimeSeries with the values of :py:obj:`self` The index of the row is used for the timestamp :return: Return a new MultiDimensionalTimeSeries with the values of the Matrix :rtype: MultiDimensionalTimeSeries
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python
train
romanz/trezor-agent
libagent/gpg/keyring.py
https://github.com/romanz/trezor-agent/blob/513b1259c4d7aca5f88cd958edc11828d0712f1b/libagent/gpg/keyring.py#L243-L249
def export_public_keys(env=None, sp=subprocess): """Export all GPG public keys.""" args = gpg_command(['--export']) result = check_output(args=args, env=env, sp=sp) if not result: raise KeyError('No GPG public keys found at env: {!r}'.format(env)) return result
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Export all GPG public keys.
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python
train
PiotrDabkowski/Js2Py
js2py/base.py
https://github.com/PiotrDabkowski/Js2Py/blob/c0fa43f5679cf91ca8986c5747fcb07a433dc584/js2py/base.py#L357-L427
def put(self, prop, val, op=None): #external use! '''Just like in js: self.prop op= val for example when op is '+' it will be self.prop+=val op can be either None for simple assignment or one of: * / % + - << >> & ^ |''' if self.Class == 'Undefined' or self.Class == 'Nu...
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Just like in js: self.prop op= val for example when op is '+' it will be self.prop+=val op can be either None for simple assignment or one of: * / % + - << >> & ^ |
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python
valid
apple/turicreate
src/unity/python/turicreate/toolkits/regression/linear_regression.py
https://github.com/apple/turicreate/blob/74514c3f99e25b46f22c6e02977fe3da69221c2e/src/unity/python/turicreate/toolkits/regression/linear_regression.py#L519-L564
def predict(self, dataset, missing_value_action='auto'): """ Return target value predictions for ``dataset``, using the trained linear regression model. This method can be used to get fitted values for the model by inputting the training dataset. Parameters ---------- ...
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Return target value predictions for ``dataset``, using the trained linear regression model. This method can be used to get fitted values for the model by inputting the training dataset. Parameters ---------- dataset : SFrame | pandas.Dataframe Dataset of new observat...
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python
train
inasafe/inasafe
safe/utilities/metadata.py
https://github.com/inasafe/inasafe/blob/831d60abba919f6d481dc94a8d988cc205130724/safe/utilities/metadata.py#L183-L247
def read_iso19115_metadata(layer_uri, keyword=None, version_35=False): """Retrieve keywords from a metadata object :param layer_uri: Uri to layer. :type layer_uri: basestring :param keyword: The key of keyword that want to be read. If None, return all keywords in dictionary. :type keyword:...
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Retrieve keywords from a metadata object :param layer_uri: Uri to layer. :type layer_uri: basestring :param keyword: The key of keyword that want to be read. If None, return all keywords in dictionary. :type keyword: basestring :returns: Dictionary of keywords or value of key as string. ...
[ "Retrieve", "keywords", "from", "a", "metadata", "object" ]
python
train
open-mmlab/mmcv
mmcv/image/transforms/geometry.py
https://github.com/open-mmlab/mmcv/blob/0d77f61450aab4dde8b8585a577cc496acb95d7f/mmcv/image/transforms/geometry.py#L112-L163
def imcrop(img, bboxes, scale=1.0, pad_fill=None): """Crop image patches. 3 steps: scale the bboxes -> clip bboxes -> crop and pad. Args: img (ndarray): Image to be cropped. bboxes (ndarray): Shape (k, 4) or (4, ), location of cropped bboxes. scale (float, optional): Scale ratio of...
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Crop image patches. 3 steps: scale the bboxes -> clip bboxes -> crop and pad. Args: img (ndarray): Image to be cropped. bboxes (ndarray): Shape (k, 4) or (4, ), location of cropped bboxes. scale (float, optional): Scale ratio of bboxes, the default value 1.0 means no paddin...
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python
test
iterative/dvc
dvc/utils/__init__.py
https://github.com/iterative/dvc/blob/8bb21261e34c9632453e09090de7ebe50e38d341/dvc/utils/__init__.py#L83-L105
def dict_filter(d, exclude=[]): """ Exclude specified keys from a nested dict """ if isinstance(d, list): ret = [] for e in d: ret.append(dict_filter(e, exclude)) return ret elif isinstance(d, dict): ret = {} for k, v in d.items(): if ...
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Exclude specified keys from a nested dict
[ "Exclude", "specified", "keys", "from", "a", "nested", "dict" ]
python
train
cloud9ers/gurumate
environment/lib/python2.7/site-packages/IPython/core/inputsplitter.py
https://github.com/cloud9ers/gurumate/blob/075dc74d1ee62a8c6b7a8bf2b271364f01629d1e/environment/lib/python2.7/site-packages/IPython/core/inputsplitter.py#L338-L391
def push(self, lines): """Push one or more lines of input. This stores the given lines and returns a status code indicating whether the code forms a complete Python block or not. Any exceptions generated in compilation are swallowed, but if an exception was produced, the method...
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Push one or more lines of input. This stores the given lines and returns a status code indicating whether the code forms a complete Python block or not. Any exceptions generated in compilation are swallowed, but if an exception was produced, the method returns True. Parameters...
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python
test
dhylands/rshell
rshell/main.py
https://github.com/dhylands/rshell/blob/a92a8fa8074ac792241c83c640a51b394667c324/rshell/main.py#L1080-L1109
def send_file_to_host(src_filename, dst_file, filesize): """Function which runs on the pyboard. Matches up with recv_file_from_remote.""" import sys import ubinascii try: with open(src_filename, 'rb') as src_file: bytes_remaining = filesize if HAS_BUFFER: ...
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Function which runs on the pyboard. Matches up with recv_file_from_remote.
[ "Function", "which", "runs", "on", "the", "pyboard", ".", "Matches", "up", "with", "recv_file_from_remote", "." ]
python
train
un33k/django-toolware
toolware/templatetags/rounder.py
https://github.com/un33k/django-toolware/blob/973f3e003dc38b812897dab88455bee37dcaf931/toolware/templatetags/rounder.py#L10-L34
def roundplus(number): """ given an number, this fuction rounds the number as the following examples: 87 -> 87, 100 -> 100+, 188 -> 100+, 999 -> 900+, 1001 -> 1000+, ...etc """ num = str(number) if not num.isdigit(): return num num = str(number) digits = len(num) rounded = '...
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given an number, this fuction rounds the number as the following examples: 87 -> 87, 100 -> 100+, 188 -> 100+, 999 -> 900+, 1001 -> 1000+, ...etc
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python
test
sirfoga/pyhal
hal/cvs/gits.py
https://github.com/sirfoga/pyhal/blob/4394d8a1f7e45bea28a255ec390f4962ee64d33a/hal/cvs/gits.py#L135-L147
def get_version(self, diff_to_increase_ratio): """Gets version :param diff_to_increase_ratio: Ratio to convert number of changes into :return: Version of this code, based on commits diffs """ diffs = self.get_diff_amounts() version = Version() for diff in diffs:...
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Gets version :param diff_to_increase_ratio: Ratio to convert number of changes into :return: Version of this code, based on commits diffs
[ "Gets", "version" ]
python
train
llllllllll/codetransformer
codetransformer/decompiler/_343.py
https://github.com/llllllllll/codetransformer/blob/c5f551e915df45adc7da7e0b1b635f0cc6a1bb27/codetransformer/decompiler/_343.py#L1344-L1352
def _binop_handler(nodetype): """ Factory function for binary operator handlers. """ def _handler(toplevel, stack_builders): right = make_expr(stack_builders) left = make_expr(stack_builders) return ast.BinOp(left=left, op=nodetype(), right=right) return _handler
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Factory function for binary operator handlers.
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python
train
spacetelescope/stsci.tools
lib/stsci/tools/convertlog.py
https://github.com/spacetelescope/stsci.tools/blob/9a022503ad24ca54ce83331482dfa3ff6de9f403/lib/stsci/tools/convertlog.py#L53-L112
def convert(input, width=132, output=None, keep=False): """Input ASCII trailer file "input" will be read. The contents will then be written out to a FITS file in the same format as used by 'stwfits' from IRAF. Parameters =========== input : str Filename of input ASCII trailer file ...
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Input ASCII trailer file "input" will be read. The contents will then be written out to a FITS file in the same format as used by 'stwfits' from IRAF. Parameters =========== input : str Filename of input ASCII trailer file width : int Number of characters wide to use for defin...
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python
train
crodjer/paster
paster/services.py
https://github.com/crodjer/paster/blob/0cd7230074850ba74e80c740a8bc2502645dd743/paster/services.py#L63-L74
def list_syntax(self): ''' Prints a list of available syntax for the current paste service ''' syntax_list = ['Available syntax for %s:' %(self)] logging.info(syntax_list[0]) for key in self.SYNTAX_DICT.keys(): syntax = '\t%-20s%-30s' %(key, self.SYNTAX_DICT[k...
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Prints a list of available syntax for the current paste service
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python
train
OSSOS/MOP
src/ossos/core/ossos/parsers.py
https://github.com/OSSOS/MOP/blob/94f91d32ad5ec081d5a1ebd67604a838003465af/src/ossos/core/ossos/parsers.py#L23-L41
def ossos_release_parser(table=False, data_release=parameters.RELEASE_VERSION): """ extra fun as this is space-separated so using CSV parsers is not an option """ names = ['cl', 'p', 'j', 'k', 'sh', 'object', 'mag', 'e_mag', 'Filt', 'Hsur', 'dist', 'e_dist', 'Nobs', 'time', 'av_xres', 'av_y...
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extra fun as this is space-separated so using CSV parsers is not an option
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python
train
rbuffat/pyepw
pyepw/epw.py
https://github.com/rbuffat/pyepw/blob/373d4d3c8386c8d35789f086ac5f6018c2711745/pyepw/epw.py#L6011-L6039
def relative_humidity(self, value=999): """Corresponds to IDD Field `relative_humidity` Args: value (int): value for IDD Field `relative_humidity` value >= 0 value <= 110 Missing value: 999 if `value` is None it will not be che...
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Corresponds to IDD Field `relative_humidity` Args: value (int): value for IDD Field `relative_humidity` value >= 0 value <= 110 Missing value: 999 if `value` is None it will not be checked against the specification and ...
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python
train
PythonSanSebastian/docstamp
docstamp/qrcode.py
https://github.com/PythonSanSebastian/docstamp/blob/b43808f2e15351b0b2f0b7eade9c7ef319c9e646/docstamp/qrcode.py#L10-L41
def save_into_qrcode(text, out_filepath, color='', box_size=10, pixel_size=1850): """ Save `text` in a qrcode svg image file. Parameters ---------- text: str The string to be codified in the QR image. out_filepath: str Path to the output file color: str A RGB color exp...
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Save `text` in a qrcode svg image file. Parameters ---------- text: str The string to be codified in the QR image. out_filepath: str Path to the output file color: str A RGB color expressed in 6 hexadecimal values. box_size: scalar Size of the QR code boxes.
[ "Save", "text", "in", "a", "qrcode", "svg", "image", "file", "." ]
python
test
renatopp/liac-arff
arff.py
https://github.com/renatopp/liac-arff/blob/6771f4cdd13d0eca74d3ebbaa6290297dd0a381d/arff.py#L968-L976
def encode(self, obj): '''Encodes a given object to an ARFF file. :param obj: the object containing the ARFF information. :return: the ARFF file as an unicode string. ''' data = [row for row in self.iter_encode(obj)] return u'\n'.join(data)
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Encodes a given object to an ARFF file. :param obj: the object containing the ARFF information. :return: the ARFF file as an unicode string.
[ "Encodes", "a", "given", "object", "to", "an", "ARFF", "file", "." ]
python
train
rkhleics/wagtailmenus
wagtailmenus/models/mixins.py
https://github.com/rkhleics/wagtailmenus/blob/a41f240bed0d362e0d4dd4ef04a230f2b1827a93/wagtailmenus/models/mixins.py#L21-L56
def _get_specified_sub_menu_template_name(self, level): """ Called by get_sub_menu_template(). Iterates through the various ways in which developers can specify potential sub menu templates for a menu, and returns the name of the most suitable template for the ``current_level``. ...
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Called by get_sub_menu_template(). Iterates through the various ways in which developers can specify potential sub menu templates for a menu, and returns the name of the most suitable template for the ``current_level``. Values are checked in the following order: 1. The ``sub_menu_templ...
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python
train
gwastro/pycbc
pycbc/workflow/segment.py
https://github.com/gwastro/pycbc/blob/7a64cdd104d263f1b6ea0b01e6841837d05a4cb3/pycbc/workflow/segment.py#L1325-L1393
def file_needs_generating(file_path, cp, tags=None): """ This job tests the file location and determines if the file should be generated now or if an error should be raised. This uses the generate_segment_files variable, global to this module, which is described above and in the documentation. ...
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This job tests the file location and determines if the file should be generated now or if an error should be raised. This uses the generate_segment_files variable, global to this module, which is described above and in the documentation. Parameters ----------- file_path : path Location ...
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python
train
mushkevych/scheduler
synergy/scheduler/tree.py
https://github.com/mushkevych/scheduler/blob/6740331360f49083c208085fb5a60ce80ebf418b/synergy/scheduler/tree.py#L78-L106
def _get_next_child_node(self, parent): """ Iterates among children of the given parent and looks for a suitable node to process In case given parent has no suitable nodes, a younger parent will be found and the logic will be repeated for him """ children_keys...
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Iterates among children of the given parent and looks for a suitable node to process In case given parent has no suitable nodes, a younger parent will be found and the logic will be repeated for him
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python
train
adafruit/Adafruit_CircuitPython_OneWire
adafruit_onewire/bus.py
https://github.com/adafruit/Adafruit_CircuitPython_OneWire/blob/113ca99b9087f7031f0b46a963472ad106520f9b/adafruit_onewire/bus.py#L126-L141
def write(self, buf, *, start=0, end=None): """ Write the bytes from ``buf`` to the device. If ``start`` or ``end`` is provided, then the buffer will be sliced as if ``buffer[start:end]``. This will not cause an allocation like ``buffer[start:end]`` will so it saves memory. ...
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Write the bytes from ``buf`` to the device. If ``start`` or ``end`` is provided, then the buffer will be sliced as if ``buffer[start:end]``. This will not cause an allocation like ``buffer[start:end]`` will so it saves memory. :param bytearray buf: buffer containing the bytes to write ...
[ "Write", "the", "bytes", "from", "buf", "to", "the", "device", "." ]
python
train
dopefishh/pympi
pympi/Elan.py
https://github.com/dopefishh/pympi/blob/79c747cde45b5ba203ed93154d8c123ac9c3ef56/pympi/Elan.py#L436-L464
def create_gaps_and_overlaps_tier(self, tier1, tier2, tier_name=None, maxlen=-1, fast=False): """Create a tier with the gaps and overlaps of the annotations. For types see :func:`get_gaps_and_overlaps` :param str tier1: Name of the first tier. :para...
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Create a tier with the gaps and overlaps of the annotations. For types see :func:`get_gaps_and_overlaps` :param str tier1: Name of the first tier. :param str tier2: Name of the second tier. :param str tier_name: Name of the new tier, if ``None`` the name will ...
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python
test
cisco-sas/kitty
kitty/data/data_manager.py
https://github.com/cisco-sas/kitty/blob/cb0760989dcdfe079e43ac574d872d0b18953a32/kitty/data/data_manager.py#L290-L300
def _create_table(self): ''' create the current table if not exists ''' self._cursor.execute(''' CREATE TABLE IF NOT EXISTS %(name)s ( %(fields)s ) ''' % { 'name': self._name, 'fields': ','.join('%s %s' % (k, v) for (k, v) in self._fields) ...
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create the current table if not exists
[ "create", "the", "current", "table", "if", "not", "exists" ]
python
train
GNS3/gns3-server
gns3server/controller/compute.py
https://github.com/GNS3/gns3-server/blob/a221678448fb5d24e977ef562f81d56aacc89ab1/gns3server/controller/compute.py#L376-L388
def http_query(self, method, path, data=None, dont_connect=False, **kwargs): """ :param dont_connect: If true do not reconnect if not connected """ if not self._connected and not dont_connect: if self._id == "vm" and not self._controller.gns3vm.running: yield...
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:param dont_connect: If true do not reconnect if not connected
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python
train
theelous3/asks
asks/request_object.py
https://github.com/theelous3/asks/blob/ea522ea971ecb031d488a6301dc2718516cadcd6/asks/request_object.py#L427-L460
def _dict_to_query(data, params=True, base_query=False): ''' Turns python dicts in to valid body-queries or queries for use directly in the request url. Unlike the stdlib quote() and it's variations, this also works on iterables like lists which are normally not valid. The use o...
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Turns python dicts in to valid body-queries or queries for use directly in the request url. Unlike the stdlib quote() and it's variations, this also works on iterables like lists which are normally not valid. The use of lists in this manner is not a great idea unless the server supports...
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python
train
inasafe/inasafe
safe/definitions/utilities.py
https://github.com/inasafe/inasafe/blob/831d60abba919f6d481dc94a8d988cc205130724/safe/definitions/utilities.py#L380-L393
def all_default_fields(): """Helper to retrieve all fields which has default value. :returns: List of default fields. :rtype: list """ default_fields = [] for item in dir(fields): if not item.startswith("__"): var = getattr(definitions, item) if isinstance(var, d...
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Helper to retrieve all fields which has default value. :returns: List of default fields. :rtype: list
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python
train
berkerpeksag/astor
astor/node_util.py
https://github.com/berkerpeksag/astor/blob/d9e893eb49d9eb2e30779680f90cd632c30e0ba1/astor/node_util.py#L61-L92
def dump_tree(node, name=None, initial_indent='', indentation=' ', maxline=120, maxmerged=80, # Runtime optimization iter_node=iter_node, special=ast.AST, list=list, isinstance=isinstance, type=type, len=len): """Dumps an AST or similar structure: -...
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Dumps an AST or similar structure: - Pretty-prints with indentation - Doesn't print line/column/ctx info
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python
train
robdmc/behold
behold/logger.py
https://github.com/robdmc/behold/blob/ac1b7707e2d7472a50d837dda78be1e23af8fce5/behold/logger.py#L519-L528
def is_true(self, item=None): """ If you are filtering on object values, you need to pass that object here. """ if item: values = [item] else: values = [] self._get_item_and_att_names(*values) return self._passes_all
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python
train
ansible/tower-cli
tower_cli/resources/role.py
https://github.com/ansible/tower-cli/blob/a2b151fed93c47725018d3034848cb3a1814bed7/tower_cli/resources/role.py#L203-L209
def set_display_columns(self, set_true=[], set_false=[]): """Add or remove columns from the output.""" for i in range(len(self.fields)): if self.fields[i].name in set_true: self.fields[i].display = True elif self.fields[i].name in set_false: self.f...
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Add or remove columns from the output.
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python
valid