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Kappa-Dev/KaSim
python/kappy/kappa_common.py
https://github.com/Kappa-Dev/KaSim/blob/12a01c616a47e3046323103625795fb2fca8273a/python/kappy/kappa_common.py#L72-L77
def toJSON(self): """Get a json dict of the attributes of this object.""" return {"id": self.id, "compile": self.compile, "position": self.position, "version": self.version}
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Get a json dict of the attributes of this object.
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python
valid
HumanCellAtlas/cloud-blobstore
cloud_blobstore/s3.py
https://github.com/HumanCellAtlas/cloud-blobstore/blob/b8a60e8e8c0da0e39dda084cb467a34cd2d1ef0a/cloud_blobstore/s3.py#L295-L308
def get_creation_date( self, bucket: str, key: str, ) -> datetime: """ Retrieves the creation date for a given key in a given bucket. :param bucket: the bucket the object resides in. :param key: the key of the object for which the creation date is ...
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Retrieves the creation date for a given key in a given bucket. :param bucket: the bucket the object resides in. :param key: the key of the object for which the creation date is being retrieved. :return: the creation date
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python
train
shoebot/shoebot
lib/graph/__init__.py
https://github.com/shoebot/shoebot/blob/d554c1765c1899fa25727c9fc6805d221585562b/lib/graph/__init__.py#L551-L554
def nodes_by_category(self, category): """ Returns nodes with the given category attribute. """ return [n for n in self.nodes if n.category == category]
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Returns nodes with the given category attribute.
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python
valid
VikParuchuri/percept
percept/utils/input.py
https://github.com/VikParuchuri/percept/blob/90304ba82053e2a9ad2bacaab3479403d3923bcf/percept/utils/input.py#L1-L11
def import_from_string(import_string): """ Import a class from a string import_string - string path to module to import using dot notation (foo.bar) """ import_split = import_string.split(".") import_class = import_split[-1] module_path = ".".join(import_split[:-1]) mod = __import__(modu...
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Import a class from a string import_string - string path to module to import using dot notation (foo.bar)
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python
train
MisterWil/abodepy
abodepy/automation.py
https://github.com/MisterWil/abodepy/blob/6f84bb428fd1da98855f55083cd427bebbcc57ae/abodepy/automation.py#L42-L54
def trigger(self, only_manual=True): """Trigger a quick-action automation.""" if not self.is_quick_action and only_manual: raise AbodeException((ERROR.TRIGGER_NON_QUICKACTION)) url = CONST.AUTOMATION_APPLY_URL url = url.replace( '$AUTOMATIONID$', self.automation_...
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Trigger a quick-action automation.
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python
train
bokeh/bokeh
bokeh/model.py
https://github.com/bokeh/bokeh/blob/dc8cf49e4e4302fd38537ad089ece81fbcca4737/bokeh/model.py#L734-L777
def _to_json_like(self, include_defaults): ''' Returns a dictionary of the attributes of this object, in a layout corresponding to what BokehJS expects at unmarshalling time. This method does not convert "Bokeh types" into "plain JSON types," for example each child Model will still be a...
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python
train
annoviko/pyclustering
pyclustering/cluster/ga_maths.py
https://github.com/annoviko/pyclustering/blob/98aa0dd89fd36f701668fb1eb29c8fb5662bf7d0/pyclustering/cluster/ga_maths.py#L60-L66
def get_centres(chromosomes, data, count_clusters): """! """ centres = ga_math.calc_centers(chromosomes, data, count_clusters) return centres
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!
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python
valid
hearsaycorp/normalize
normalize/property/meta.py
https://github.com/hearsaycorp/normalize/blob/8b36522ddca6d41b434580bd848f3bdaa7a999c8/normalize/property/meta.py#L36-L113
def has(selfie, self, args, kwargs): """This is called 'has' but is called indirectly. Each Property sub-class is installed with this function which replaces their __new__. It is called 'has', because it runs during property declaration, processes the arguments and is responsible for returning an appr...
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python
train
cocagne/txdbus
txdbus/client.py
https://github.com/cocagne/txdbus/blob/eb424918764b7b93eecd2a4e2e5c2d0b2944407b/txdbus/client.py#L570-L575
def _onMethodTimeout(self, serial, d): """ Called when a remote method invocation timeout occurs """ del self._pendingCalls[serial] d.errback(error.TimeOut('Method call timed out'))
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Called when a remote method invocation timeout occurs
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python
train
zeaphoo/reston
reston/core/dvm.py
https://github.com/zeaphoo/reston/blob/96502487b2259572df55237c9526f92627465088/reston/core/dvm.py#L7938-L7948
def get_fields(self): """ Return all field objects :rtype: a list of :class:`EncodedField` objects """ l = [] for i in self.classes.class_def: for j in i.get_fields(): l.append(j) return l
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Return all field objects :rtype: a list of :class:`EncodedField` objects
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python
train
jhuapl-boss/intern
intern/remote/boss/remote.py
https://github.com/jhuapl-boss/intern/blob/d8fc6df011d8f212c87e6a1fd4cc21cfb5d103ed/intern/remote/boss/remote.py#L794-L809
def create_metadata(self, resource, keys_vals): """ Associates new key-value pairs with the given resource. Will attempt to add all key-value pairs even if some fail. Args: resource (intern.resource.boss.BossResource) keys_vals (dictionary): Collection of key-va...
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Associates new key-value pairs with the given resource. Will attempt to add all key-value pairs even if some fail. Args: resource (intern.resource.boss.BossResource) keys_vals (dictionary): Collection of key-value pairs to assign to given resource. Rais...
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python
train
soravux/scoop
scoop/launch/workerLaunch.py
https://github.com/soravux/scoop/blob/d391dfa62f47e49d48328ee9cf08aa114256fd33/scoop/launch/workerLaunch.py#L80-L106
def _WorkerCommand_environment(self): """Return list of shell commands to prepare the environment for bootstrap.""" worker = self.workersArguments c = [] if worker.prolog: c.extend([ "source", worker.prolog, "&&", ...
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Return list of shell commands to prepare the environment for bootstrap.
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python
train
square/connect-python-sdk
squareconnect/models/order_fulfillment_pickup_details.py
https://github.com/square/connect-python-sdk/blob/adc1d09e817986cdc607391580f71d6b48ed4066/squareconnect/models/order_fulfillment_pickup_details.py#L456-L470
def cancel_reason(self, cancel_reason): """ Sets the cancel_reason of this OrderFulfillmentPickupDetails. A description of why the pickup was canceled. Max length is 100 characters. :param cancel_reason: The cancel_reason of this OrderFulfillmentPickupDetails. :type: str ...
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Sets the cancel_reason of this OrderFulfillmentPickupDetails. A description of why the pickup was canceled. Max length is 100 characters. :param cancel_reason: The cancel_reason of this OrderFulfillmentPickupDetails. :type: str
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python
train
common-workflow-language/cwltool
cwltool/docker_id.py
https://github.com/common-workflow-language/cwltool/blob/cb81b22abc52838823da9945f04d06739ab32fda/cwltool/docker_id.py#L109-L120
def docker_machine_id(): # type: () -> Tuple[Optional[int], Optional[int]] """ Asks docker-machine for active machine and gets the UID of the docker user inside the vm :return: tuple (UID, GID), or (None, None) if error (e.g. docker-machine not present or stopped) """ machine_name = docker_mach...
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python
train
a1ezzz/wasp-general
wasp_general/cache.py
https://github.com/a1ezzz/wasp-general/blob/1029839d33eb663f8dec76c1c46754d53c1de4a9/wasp_general/cache.py#L299-L331
def put(self, result, decorated_function, *args, **kwargs): """ :meth:`WCacheStorage.put` method implementation """ self.__check(decorated_function, *args, **kwargs) ref = weakref.ref(args[0]) if decorated_function not in self._storage: cache_entry = self._cache_record_cls.create(result, decorated_functio...
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:meth:`WCacheStorage.put` method implementation
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python
train
emilydolson/avida-spatial-tools
avidaspatial/utils.py
https://github.com/emilydolson/avida-spatial-tools/blob/7beb0166ccefad5fa722215b030ac2a53d62b59e/avidaspatial/utils.py#L195-L214
def convert_world_to_phenotype(world): """ Converts sets indicating the resources present in a single cell to binary strings (bit order is based on the order of resources in world.resources). TODO: Figure out how to handle relationship between resources and tasks Inputs: world - an EnvironmentFile...
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python
train
kdeldycke/maildir-deduplicate
maildir_deduplicate/mail.py
https://github.com/kdeldycke/maildir-deduplicate/blob/f1c6ff25b80c6c1a4dc2dc7a65b34d808b0b7733/maildir_deduplicate/mail.py#L117-L125
def subject(self): """ Normalized subject. Only used for debugging and human-friendly logging. """ # Fetch subject from first message. subject = self.message.get('Subject', '') subject, _ = re.subn(r'\s+', ' ', subject) return subject
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Normalized subject. Only used for debugging and human-friendly logging.
[ "Normalized", "subject", "." ]
python
train
theiviaxx/Frog
frog/views/piece.py
https://github.com/theiviaxx/Frog/blob/a9475463a8eed1323fe3ef5d51f9751fb1dc9edd/frog/views/piece.py#L57-L67
def image(request, obj_id): """Handles a request based on method and calls the appropriate function""" obj = Image.objects.get(pk=obj_id) if request.method == 'POST': return post(request, obj) elif request.method == 'PUT': getPutData(request) return put(request, obj) elif req...
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Handles a request based on method and calls the appropriate function
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python
train
jf-parent/brome
brome/core/proxy_driver.py
https://github.com/jf-parent/brome/blob/784f45d96b83b703dd2181cb59ca8ea777c2510e/brome/core/proxy_driver.py#L208-L303
def find_all(self, selector, **kwargs): """Return all the elements found with a selector Args: selector (str): the selector used to find the element Kwargs: wait_until_present (bool) default configurable via proxy_driver:wait_until_present_before_find ...
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Return all the elements found with a selector Args: selector (str): the selector used to find the element Kwargs: wait_until_present (bool) default configurable via proxy_driver:wait_until_present_before_find wait_until_visible (bool) default configu...
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python
train
stevearc/dynamo3
dynamo3/connection.py
https://github.com/stevearc/dynamo3/blob/f897c40ece28586272dbcab8f0d99a14a1831dda/dynamo3/connection.py#L781-L811
def batch_get(self, tablename, keys, attributes=None, alias=None, consistent=False, return_capacity=None): """ Perform a batch get of many items in a table Parameters ---------- tablename : str Name of the table to fetch from keys : list or ...
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python
train
googleapis/google-cloud-python
bigtable/google/cloud/bigtable/column_family.py
https://github.com/googleapis/google-cloud-python/blob/85e80125a59cb10f8cb105f25ecc099e4b940b50/bigtable/google/cloud/bigtable/column_family.py#L242-L251
def to_pb(self): """Converts the column family to a protobuf. :rtype: :class:`.table_v2_pb2.ColumnFamily` :returns: The converted current object. """ if self.gc_rule is None: return table_v2_pb2.ColumnFamily() else: return table_v2_pb2.ColumnFamil...
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python
train
limix/glimix-core
glimix_core/cov/_linear.py
https://github.com/limix/glimix-core/blob/cddd0994591d100499cc41c1f480ddd575e7a980/glimix_core/cov/_linear.py#L79-L89
def value(self): """ Covariance matrix. Returns ------- K : ndarray s⋅XXᵀ. """ X = self.X return self.scale * (X @ X.T)
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Covariance matrix. Returns ------- K : ndarray s⋅XXᵀ.
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python
valid
amaas-fintech/amaas-core-sdk-python
amaascore/assets/asset.py
https://github.com/amaas-fintech/amaas-core-sdk-python/blob/347b71f8e776b2dde582b015e31b4802d91e8040/amaascore/assets/asset.py#L91-L97
def maturity_date(self, value): """ The date on which the asset matures and no longer holds value :param value: :return: """ self._maturity_date = parse(value).date() if isinstance(value, type_check) else value
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The date on which the asset matures and no longer holds value :param value: :return:
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python
train
nfcpy/nfcpy
src/nfc/snep/client.py
https://github.com/nfcpy/nfcpy/blob/6649146d1afdd5e82b2b6b1ea00aa58d50785117/src/nfc/snep/client.py#L223-L252
def put(self, ndef_message, timeout=1.0): """Send an NDEF message to the server. Temporarily connects to the default SNEP server if the client is not yet connected. .. deprecated:: 0.13 Use :meth:`put_records` or :meth:`put_octets`. """ if not self.socket: ...
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Send an NDEF message to the server. Temporarily connects to the default SNEP server if the client is not yet connected. .. deprecated:: 0.13 Use :meth:`put_records` or :meth:`put_octets`.
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python
train
SuperCowPowers/workbench
workbench/utils/pcap_streamer.py
https://github.com/SuperCowPowers/workbench/blob/710232756dd717f734253315e3d0b33c9628dafb/workbench/utils/pcap_streamer.py#L83-L98
def store_file(self, filename): ''' Store a file into workbench ''' # Spin up workbench self.workbench = zerorpc.Client(timeout=300, heartbeat=60) self.workbench.connect("tcp://127.0.0.1:4242") # Open the file and send it to workbench storage_name = "streamin...
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Store a file into workbench
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python
train
pytroll/satpy
satpy/composites/__init__.py
https://github.com/pytroll/satpy/blob/1f21d20ac686b745fb0da9b4030d139893e066dd/satpy/composites/__init__.py#L114-L143
def load_compositors(self, sensor_names): """Load all compositor configs for the provided sensors. Args: sensor_names (list of strings): Sensor names that have matching ``sensor_name.yaml`` config files. Returns: (comps, mods)...
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Load all compositor configs for the provided sensors. Args: sensor_names (list of strings): Sensor names that have matching ``sensor_name.yaml`` config files. Returns: (comps, mods): Where `comps` is a dictionary: ...
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python
train
MikaSoftware/django-starterkit
starterkit/auth/backends.py
https://github.com/MikaSoftware/django-starterkit/blob/b82c4cb56ab8ec0b46136e9efcc3d6481fca1eeb/starterkit/auth/backends.py#L27-L38
def authenticate(self, username=None, password=None, **kwargs): """Allow users to log in with their email address or username.""" try: # Try to fetch the user by searching the username or email field user = get_user_model().objects.filter(Q(username=username)|Q(email=username))[0]...
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Allow users to log in with their email address or username.
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python
train
aparo/pyes
pyes/orm/queryset.py
https://github.com/aparo/pyes/blob/712eb6095961755067b2b5baa262008ade6584b3/pyes/orm/queryset.py#L427-L435
def bulk_create(self, objs, batch_size=None): """ Inserts each of the instances into the database. This does *not* call save() on each of the instances, does not send any pre/post save signals, and does not set the primary key attribute if it is an autoincrement field. ""...
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Inserts each of the instances into the database. This does *not* call save() on each of the instances, does not send any pre/post save signals, and does not set the primary key attribute if it is an autoincrement field.
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python
train
nerdvegas/rez
src/rez/serialise.py
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/serialise.py#L369-L395
def load_yaml(stream, **kwargs): """Load yaml-formatted data from a stream. Args: stream (file-like object). Returns: dict. """ # if there's an error parsing the yaml, and you pass yaml.load a string, # it will print lines of context, but will print "<string>" instead of a ...
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Load yaml-formatted data from a stream. Args: stream (file-like object). Returns: dict.
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python
train
cloud-custodian/cloud-custodian
c7n/filters/offhours.py
https://github.com/cloud-custodian/cloud-custodian/blob/52ef732eb3d7bc939d1579faf519314814695c08/c7n/filters/offhours.py#L448-L463
def get_tag_value(self, i): """Get the resource's tag value specifying its schedule.""" # Look for the tag, Normalize tag key and tag value found = False for t in i.get('Tags', ()): if t['Key'].lower() == self.tag_key: found = t['Value'] break ...
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Get the resource's tag value specifying its schedule.
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python
train
QInfer/python-qinfer
src/qinfer/domains.py
https://github.com/QInfer/python-qinfer/blob/8170c84a0be1723f8c6b09e0d3c7a40a886f1fe3/src/qinfer/domains.py#L640-L657
def values(self): """ Returns an `np.array` of type `self.dtype` containing some values from the domain. For domains where ``is_finite`` is ``True``, all elements of the domain will be yielded exactly once. :rtype: `np.ndarray` """ # This code comes from...
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Returns an `np.array` of type `self.dtype` containing some values from the domain. For domains where ``is_finite`` is ``True``, all elements of the domain will be yielded exactly once. :rtype: `np.ndarray`
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python
train
pyapi-gitlab/pyapi-gitlab
gitlab/__init__.py
https://github.com/pyapi-gitlab/pyapi-gitlab/blob/f74b6fb5c13cecae9524997847e928905cc60acf/gitlab/__init__.py#L63-L74
def get_project(self, project): """ Get info for a project identified by id or namespace/project_name :param project: The ID or URL-encoded path of the project :return: Dictionary containing the Project :raise: HttpError: If invalid response returned """ project ...
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Get info for a project identified by id or namespace/project_name :param project: The ID or URL-encoded path of the project :return: Dictionary containing the Project :raise: HttpError: If invalid response returned
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python
train
gregmuellegger/django-superform
django_superform/fields.py
https://github.com/gregmuellegger/django-superform/blob/5f389911ad38932b6dad184cc7fa81f27db752f9/django_superform/fields.py#L301-L310
def allow_blank(self, form, name): """ Allow blank determines if the form might be completely empty. If it's empty it will result in a None as the saved value for the ForeignKey. """ if self.blank is not None: return self.blank model = form._meta.model ...
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Allow blank determines if the form might be completely empty. If it's empty it will result in a None as the saved value for the ForeignKey.
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python
train
mabuchilab/QNET
src/qnet/algebra/pattern_matching/__init__.py
https://github.com/mabuchilab/QNET/blob/cc20d26dad78691d34c67173e5cd67dcac94208a/src/qnet/algebra/pattern_matching/__init__.py#L604-L606
def from_expr(cls, expr): """Instantiate proto-expression from the given Expression""" return cls(expr.args, expr.kwargs, cls=expr.__class__)
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Instantiate proto-expression from the given Expression
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python
train
gem/oq-engine
openquake/commands/abort.py
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/commands/abort.py#L27-L53
def abort(job_id): """ Abort the given job """ job = logs.dbcmd('get_job', job_id) # job_id can be negative if job is None: print('There is no job %d' % job_id) return elif job.status not in ('executing', 'running'): print('Job %d is %s' % (job.id, job.status)) r...
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Abort the given job
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python
train
rbw/pysnow
pysnow/url_builder.py
https://github.com/rbw/pysnow/blob/87c8ce0d3a089c2f59247f30efbd545fcdb8e985/pysnow/url_builder.py#L23-L36
def validate_path(path): """Validates the provided path :param path: path to validate (string) :raise: :InvalidUsage: If validation fails. """ if not isinstance(path, six.string_types) or not re.match('^/(?:[._a-zA-Z0-9-]/?)+[^/]$', path): raise InvalidU...
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Validates the provided path :param path: path to validate (string) :raise: :InvalidUsage: If validation fails.
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python
train
albahnsen/CostSensitiveClassification
costcla/models/cost_tree.py
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/models/cost_tree.py#L185-L242
def _calculate_gain(self, cost_base, y_true, X, cost_mat, split): """ Private function to calculate the gain in cost of using split in the current node. Parameters ---------- cost_base : float Cost of the naive prediction y_true : array indicator matrix ...
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Private function to calculate the gain in cost of using split in the current node. Parameters ---------- cost_base : float Cost of the naive prediction y_true : array indicator matrix Ground truth (correct) labels. X : array-like of shape = [n_...
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python
train
saltstack/salt
salt/modules/npm.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/npm.py#L364-L406
def cache_list(path=None, runas=None, env=None): ''' List NPM cached packages. If no path for a specific package is provided this will list all the cached packages. path The cache subpath to list, or None to list the entire cache runas The user to run NPM with env Env...
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List NPM cached packages. If no path for a specific package is provided this will list all the cached packages. path The cache subpath to list, or None to list the entire cache runas The user to run NPM with env Environment variables to set when invoking npm. Uses the same ``...
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python
train
jay-johnson/antinex-client
antinex_client/log/setup_logging.py
https://github.com/jay-johnson/antinex-client/blob/850ba2a2fe21c836e071def618dcecc9caf5d59c/antinex_client/log/setup_logging.py#L6-L59
def setup_logging( default_level=logging.INFO, default_path="{}/logging.json".format( os.getenv( "LOG_DIR", os.path.dirname(os.path.realpath(__file__)))), env_key="LOG_CFG", config_name=None): """setup_logging Setup logging configurati...
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setup_logging Setup logging configuration :param default_level: level to log :param default_path: path to config (optional) :param env_key: path to config in this env var :param config_name: filename for config
[ "setup_logging" ]
python
train
a10networks/a10-neutron-lbaas
a10_neutron_lbaas/neutron_ext/extensions/a10Certificate.py
https://github.com/a10networks/a10-neutron-lbaas/blob/ff834c295c8019874ca4b209d864367e40cc9881/a10_neutron_lbaas/neutron_ext/extensions/a10Certificate.py#L78-L88
def get_resources(cls): """Returns external resources.""" my_plurals = resource_helper.build_plural_mappings( {}, RESOURCE_ATTRIBUTE_MAP) attributes.PLURALS.update(my_plurals) attr_map = RESOURCE_ATTRIBUTE_MAP ext_resources = resource_helper.build_resource_info(my_plu...
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Returns external resources.
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python
train
inveniosoftware/invenio-oauth2server
invenio_oauth2server/views/server.py
https://github.com/inveniosoftware/invenio-oauth2server/blob/7033d3495c1a2b830e101e43918e92a37bbb49f2/invenio_oauth2server/views/server.py#L108-L116
def errors(): """Error view in case of invalid oauth requests.""" from oauthlib.oauth2.rfc6749.errors import raise_from_error try: error = None raise_from_error(request.values.get('error'), params=dict()) except OAuth2Error as raised: error = raised return render_template('in...
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Error view in case of invalid oauth requests.
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python
train
libnano/primer3-py
primer3/bindings.py
https://github.com/libnano/primer3-py/blob/0901c0ef3ac17afd69329d23db71136c00bcb635/primer3/bindings.py#L70-L97
def calcHairpin(seq, mv_conc=50.0, dv_conc=0.0, dntp_conc=0.8, dna_conc=50.0, temp_c=37, max_loop=30): ''' Calculate the hairpin formation thermodynamics of a DNA sequence. **Note that the maximum length of `seq` is 60 bp.** This is a cap suggested by the Primer3 team as the longest reasona...
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Calculate the hairpin formation thermodynamics of a DNA sequence. **Note that the maximum length of `seq` is 60 bp.** This is a cap suggested by the Primer3 team as the longest reasonable sequence length for which a two-state NN model produces reliable results (see primer3/src/libnano/thal.h:50). Args...
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python
train
sys-git/certifiable
certifiable/operators.py
https://github.com/sys-git/certifiable/blob/a3c33c0d4f3ac2c53be9eded3fae633fa5f697f8/certifiable/operators.py#L58-L83
def NAND(*args, **kwargs): """ ALL args must raise an exception when called overall. Raise the specified exception on failure OR the first exception. :params iterable[Certifier] args: The certifiers to call :param callable kwargs['exc']: Callable that excepts the unexpectedly raised...
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ALL args must raise an exception when called overall. Raise the specified exception on failure OR the first exception. :params iterable[Certifier] args: The certifiers to call :param callable kwargs['exc']: Callable that excepts the unexpectedly raised exception as argument and return an ...
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python
train
bitesofcode/projexui
projexui/widgets/xorbbrowserwidget/xorbquerywidget.py
https://github.com/bitesofcode/projexui/blob/f18a73bec84df90b034ca69b9deea118dbedfc4d/projexui/widgets/xorbbrowserwidget/xorbquerywidget.py#L609-L629
def query( self ): """ Returns the query this widget is representing from the tree widget. :return <Query> || <QueryCompound> || None """ # build a query if not searching all q = Q() operator = 'and' for i in range(se...
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Returns the query this widget is representing from the tree widget. :return <Query> || <QueryCompound> || None
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python
train
PMEAL/OpenPNM
openpnm/models/physics/capillary_pressure.py
https://github.com/PMEAL/OpenPNM/blob/0547b5724ffedc0a593aae48639d36fe10e0baed/openpnm/models/physics/capillary_pressure.py#L279-L340
def purcell_bidirectional(target, r_toroid, num_points=1e2, surface_tension='pore.surface_tension', contact_angle='pore.contact_angle', throat_diameter='throat.diameter', pore_diameter='pore...
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r""" Computes the throat capillary entry pressure assuming the throat is a toroid. Makes use of the toroidal meniscus model with mode touch. This model accounts for mensicus protrusion into adjacent pores and touching solid features. It is bidirectional becauase the connected pores generally have di...
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python
train
mcash/merchant-api-python-sdk
mcash/mapi_client/mapi_client.py
https://github.com/mcash/merchant-api-python-sdk/blob/ebe8734126790354b71077aca519ff263235944e/mcash/mapi_client/mapi_client.py#L777-L784
def upload_receipt(self, url, data): """Upload a receipt to the give url :param url: :param data: :return: """ return self.upload_attachment(url=url, data=data, mime_type='application/vnd.mcash.receipt.v1+json')
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Upload a receipt to the give url :param url: :param data: :return:
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python
train
pybel/pybel
src/pybel/canonicalize.py
https://github.com/pybel/pybel/blob/c8a7a1bdae4c475fa2a8c77f3a9a5f6d79556ca0/src/pybel/canonicalize.py#L244-L273
def _to_bel_lines_footer(graph) -> Iterable[str]: """Iterate the lines of a BEL graph's corresponding BEL script's footer. :param pybel.BELGraph graph: A BEL graph """ unqualified_edges_to_serialize = [ (u, v, d) for u, v, d in graph.edges(data=True) if d[RELATION] in UNQUALIFIE...
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Iterate the lines of a BEL graph's corresponding BEL script's footer. :param pybel.BELGraph graph: A BEL graph
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python
train
quantopian/zipline
zipline/pipeline/factors/factor.py
https://github.com/quantopian/zipline/blob/77ad15e6dc4c1cbcdc133653bac8a63fc704f7fe/zipline/pipeline/factors/factor.py#L285-L308
def function_application(func): """ Factory function for producing function application methods for Factor subclasses. """ if func not in NUMEXPR_MATH_FUNCS: raise ValueError("Unsupported mathematical function '%s'" % func) @with_doc(func) @with_name(func) def mathfunc(self): ...
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Factory function for producing function application methods for Factor subclasses.
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python
train
dmlc/gluon-nlp
scripts/parsing/common/utils.py
https://github.com/dmlc/gluon-nlp/blob/4b83eb6bcc8881e5f1081a3675adaa19fac5c0ba/scripts/parsing/common/utils.py#L56-L144
def update(self, current, values=[], exact=[], strict=[]): """ Updates the progress bar. # Arguments current: Index of current step. values: List of tuples (name, value_for_last_step). The progress bar will display averages for these values. ex...
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Updates the progress bar. # Arguments current: Index of current step. values: List of tuples (name, value_for_last_step). The progress bar will display averages for these values. exact: List of tuples (name, value_for_last_step). The progress b...
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python
train
tensorflow/tensor2tensor
tensor2tensor/models/research/transformer_symshard.py
https://github.com/tensorflow/tensor2tensor/blob/272500b6efe353aeb638d2745ed56e519462ca31/tensor2tensor/models/research/transformer_symshard.py#L227-L339
def _layer_stack(mp, inputs, self_attention_bias, layers, hparams, encoder_output=None, encoder_decoder_attention_bias=None): """A stack of layers. Args: mp: a Parallelism object inputs: a list of Tensors ...
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A stack of layers. Args: mp: a Parallelism object inputs: a list of Tensors self_attention_bias: list of bias Tensor for self-attention (see common_attention.attention_bias()) layers: a string hparams: hyperparameters for model encoder_output: optional list of tensors encoder_decode...
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python
train
Alignak-monitoring/alignak
alignak/external_command.py
https://github.com/Alignak-monitoring/alignak/blob/f3c145207e83159b799d3714e4241399c7740a64/alignak/external_command.py#L1463-L1485
def change_normal_host_check_interval(self, host, check_interval): """Modify host check interval Format of the line that triggers function call:: CHANGE_NORMAL_HOST_CHECK_INTERVAL;<host_name>;<check_interval> :param host: host to edit :type host: alignak.objects.host.Host ...
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Modify host check interval Format of the line that triggers function call:: CHANGE_NORMAL_HOST_CHECK_INTERVAL;<host_name>;<check_interval> :param host: host to edit :type host: alignak.objects.host.Host :param check_interval: new value to set :type check_interval: ...
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python
train
bcbio/bcbio-nextgen
bcbio/variation/annotation.py
https://github.com/bcbio/bcbio-nextgen/blob/6a9348c0054ccd5baffd22f1bb7d0422f6978b20/bcbio/variation/annotation.py#L17-L46
def get_gatk_annotations(config, include_depth=True, include_baseqranksum=True, gatk_input=True): """Retrieve annotations to use for GATK VariantAnnotator. If include_depth is false, we'll skip annotating DP. Since GATK downsamples this will undercount on high depth sequencing and ...
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Retrieve annotations to use for GATK VariantAnnotator. If include_depth is false, we'll skip annotating DP. Since GATK downsamples this will undercount on high depth sequencing and the standard outputs from the original callers may be preferable. BaseQRankSum can cause issues with some MuTect2 and oth...
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python
train
nutechsoftware/alarmdecoder
alarmdecoder/messages/lrr/message.py
https://github.com/nutechsoftware/alarmdecoder/blob/b0c014089e24455228cb4402cf30ba98157578cd/alarmdecoder/messages/lrr/message.py#L59-L94
def _parse_message(self, data): """ Parses the raw message from the device. :param data: message data to parse :type data: string :raises: :py:class:`~alarmdecoder.util.InvalidMessageError` """ try: _, values = data.split(':') values = va...
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Parses the raw message from the device. :param data: message data to parse :type data: string :raises: :py:class:`~alarmdecoder.util.InvalidMessageError`
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python
train
rigetti/pyquil
pyquil/gates.py
https://github.com/rigetti/pyquil/blob/ec98e453084b0037d69d8c3245f6822a5422593d/pyquil/gates.py#L290-L304
def CPHASE00(angle, control, target): """Produces a controlled-phase gate that phases the ``|00>`` state:: CPHASE00(phi) = diag([exp(1j * phi), 1, 1, 1]) This gate applies to two qubit arguments to produce the variant of the controlled phase instruction that affects the state 00. :param angle...
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Produces a controlled-phase gate that phases the ``|00>`` state:: CPHASE00(phi) = diag([exp(1j * phi), 1, 1, 1]) This gate applies to two qubit arguments to produce the variant of the controlled phase instruction that affects the state 00. :param angle: The input phase angle to apply when both qu...
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python
train
ggravlingen/pytradfri
examples/debug_info.py
https://github.com/ggravlingen/pytradfri/blob/63750fa8fb27158c013d24865cdaa7fb82b3ab53/examples/debug_info.py#L115-L125
def print_lamps(): """Print all lamp devices as JSON""" print("Printing information about all lamps paired to the Gateway") lights = [dev for dev in devices if dev.has_light_control] if len(lights) == 0: exit(bold("No lamps paired")) container = [] for l in lights: container.app...
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Print all lamp devices as JSON
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python
train
jobovy/galpy
galpy/orbit/Orbit.py
https://github.com/jobovy/galpy/blob/9c5b9fe65d58835624dffe432be282060918ee08/galpy/orbit/Orbit.py#L2287-L2319
def ra(self,*args,**kwargs): """ NAME: ra PURPOSE: return the right ascension INPUT: t - (optional) time at which to get ra (can be Quantity) obs=[X,Y,Z] - (optional) position of observer (in kpc; entries can be Quantity) (def...
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NAME: ra PURPOSE: return the right ascension INPUT: t - (optional) time at which to get ra (can be Quantity) obs=[X,Y,Z] - (optional) position of observer (in kpc; entries can be Quantity) (default=[8.0,0.,0.]) OR Orbit object that correspond...
[ "NAME", ":" ]
python
train
dopefishh/pympi
pympi/Praat.py
https://github.com/dopefishh/pympi/blob/79c747cde45b5ba203ed93154d8c123ac9c3ef56/pympi/Praat.py#L401-L408
def get_intervals(self, sort=False): """Give all the intervals or points. :param bool sort: Flag for yielding the intervals or points sorted. :yields: All the intervals """ for i in sorted(self.intervals) if sort else self.intervals: yield i
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Give all the intervals or points. :param bool sort: Flag for yielding the intervals or points sorted. :yields: All the intervals
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python
test
doconix/django-mako-plus
django_mako_plus/provider/__init__.py
https://github.com/doconix/django-mako-plus/blob/a90f9b4af19e5fa9f83452989cdcaed21569a181/django_mako_plus/provider/__init__.py#L35-L55
def template_obj_links(request, template_obj, context=None, group=None): ''' Returns the HTML for the given provider group, using a template object. This method should not normally be used (use links() instead). The use of this method is when provider need to be called from regular python code instead ...
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Returns the HTML for the given provider group, using a template object. This method should not normally be used (use links() instead). The use of this method is when provider need to be called from regular python code instead of from within a rendering template environment.
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python
train
joshspeagle/dynesty
dynesty/sampler.py
https://github.com/joshspeagle/dynesty/blob/9e482aafeb5cf84bedb896fa6f07a761d917983e/dynesty/sampler.py#L482-L759
def sample(self, maxiter=None, maxcall=None, dlogz=0.01, logl_max=np.inf, save_bounds=True, save_samples=True): """ **The main nested sampling loop.** Iteratively replace the worst live point with a sample drawn uniformly from the prior until the provided stopping criteria...
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**The main nested sampling loop.** Iteratively replace the worst live point with a sample drawn uniformly from the prior until the provided stopping criteria are reached. Instantiates a generator that will be called by the user. Parameters ---------- maxiter : int, optio...
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python
train
secure-systems-lab/securesystemslib
securesystemslib/ed25519_keys.py
https://github.com/secure-systems-lab/securesystemslib/blob/beb3109d5bb462e5a60eed88fb40ed1167bd354e/securesystemslib/ed25519_keys.py#L289-L404
def verify_signature(public_key, scheme, signature, data, use_pynacl=False): """ <Purpose> Determine whether the private key corresponding to 'public_key' produced 'signature'. verify_signature() will use the public key, the 'scheme' and 'sig', and 'data' arguments to complete the verification. >>...
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<Purpose> Determine whether the private key corresponding to 'public_key' produced 'signature'. verify_signature() will use the public key, the 'scheme' and 'sig', and 'data' arguments to complete the verification. >>> public, private = generate_public_and_private() >>> data = b'The quick brown fo...
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python
train
tensorflow/datasets
tensorflow_datasets/core/utils/py_utils.py
https://github.com/tensorflow/datasets/blob/46ceb0cf7b4690f38ecbbc689e4d659a903d08dc/tensorflow_datasets/core/utils/py_utils.py#L276-L280
def reraise(additional_msg): """Reraise an exception with an additional message.""" exc_type, exc_value, exc_traceback = sys.exc_info() msg = str(exc_value) + "\n" + additional_msg six.reraise(exc_type, exc_type(msg), exc_traceback)
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Reraise an exception with an additional message.
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python
train
mikedh/trimesh
trimesh/scene/scene.py
https://github.com/mikedh/trimesh/blob/25e059bf6d4caa74f62ffd58ce4f61a90ee4e518/trimesh/scene/scene.py#L77-L164
def add_geometry(self, geometry, node_name=None, geom_name=None, parent_node_name=None, transform=None): """ Add a geometry to the scene. If the mesh has multiple transforms defined in its ...
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Add a geometry to the scene. If the mesh has multiple transforms defined in its metadata, they will all be copied into the TransformForest of the current scene automatically. Parameters ---------- geometry : Trimesh, Path2D, Path3D PointCloud or list Geometry ...
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python
train
deepmipt/DeepPavlov
deeppavlov/settings.py
https://github.com/deepmipt/DeepPavlov/blob/f3e4a69a3764d25d2f5bad4f1f1aebc872b00f9c/deeppavlov/settings.py#L24-L35
def main(): """DeepPavlov console configuration utility.""" args = parser.parse_args() path = get_settings_path() if args.default: if populate_settings_dir(force=True): print(f'Populated {path} with default settings files') else: print(f'{path} is already a defau...
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DeepPavlov console configuration utility.
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python
test
jbarlow83/OCRmyPDF
src/ocrmypdf/__main__.py
https://github.com/jbarlow83/OCRmyPDF/blob/79c84eefa353632a3d7ccddbd398c6678c1c1777/src/ocrmypdf/__main__.py#L759-L819
def do_ruffus_exception(ruffus_five_tuple, options, log): """Replace the elaborate ruffus stack trace with a user friendly description of the error message that occurred.""" exit_code = None _task_name, _job_name, exc_name, exc_value, exc_stack = ruffus_five_tuple if isinstance(exc_name, type): ...
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Replace the elaborate ruffus stack trace with a user friendly description of the error message that occurred.
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python
train
davidcarboni/Flask-B3
b3/__init__.py
https://github.com/davidcarboni/Flask-B3/blob/55092cb1070568aeecfd2c07c5ad6122e15ca345/b3/__init__.py#L42-L85
def start_span(request_headers=None): """Collects incoming B3 headers and sets up values for this request as needed. The collected/computed values are stored on the application context g using the defined http header names as keys. :param request_headers: Incoming request headers can be passed explicitly. ...
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Collects incoming B3 headers and sets up values for this request as needed. The collected/computed values are stored on the application context g using the defined http header names as keys. :param request_headers: Incoming request headers can be passed explicitly. If not passed, Flask request.headers will ...
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python
train
Leeps-Lab/otree-redwood
otree_redwood/models.py
https://github.com/Leeps-Lab/otree-redwood/blob/59212f61a256ef77e0a9ed392ff497ea83ee6245/otree_redwood/models.py#L255-L268
def _on_decisions_event(self, event=None, **kwargs): """Called when an Event is received on the decisions channel. Saves the value in group_decisions. If num_subperiods is None, immediately broadcasts the event back out on the group_decisions channel. """ if not self.ran_ready_fu...
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Called when an Event is received on the decisions channel. Saves the value in group_decisions. If num_subperiods is None, immediately broadcasts the event back out on the group_decisions channel.
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python
train
gem/oq-engine
openquake/calculators/export/risk.py
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/calculators/export/risk.py#L131-L148
def export_avg_losses(ekey, dstore): """ :param ekey: export key, i.e. a pair (datastore key, fmt) :param dstore: datastore object """ dskey = ekey[0] oq = dstore['oqparam'] dt = oq.loss_dt() name, value, tags = _get_data(dstore, dskey, oq.hazard_stats().items()) writer = writers.Csv...
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:param ekey: export key, i.e. a pair (datastore key, fmt) :param dstore: datastore object
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python
train
quantum5/2048
_2048/game.py
https://github.com/quantum5/2048/blob/93ada2e3026eaf154e1bbee943d0500c9253e66f/_2048/game.py#L197-L211
def _draw_button(self, overlay, text, location): """Draws a button on the won and lost overlays, and return its hitbox.""" label = self.button_font.render(text, True, (119, 110, 101)) w, h = label.get_size() # Let the callback calculate the location based on # the width and heigh...
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Draws a button on the won and lost overlays, and return its hitbox.
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python
train
MouseLand/rastermap
rastermap/isorec.py
https://github.com/MouseLand/rastermap/blob/eee7a46db80b6e33207543778e11618d0fed08a6/rastermap/isorec.py#L363-L413
def fit(self, X=None, u=None, s = None): """Fit X into an embedded space. Inputs ---------- X : array, shape (n_samples, n_features) u,s,v : svd decomposition of X (optional) Assigns ---------- embedding : array-like, shape (n_samples, n_components) ...
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Fit X into an embedded space. Inputs ---------- X : array, shape (n_samples, n_features) u,s,v : svd decomposition of X (optional) Assigns ---------- embedding : array-like, shape (n_samples, n_components) Stores the embedding vectors. u,sv,v ...
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python
train
cloud9ers/gurumate
environment/lib/python2.7/site-packages/nose/plugins/attrib.py
https://github.com/cloud9ers/gurumate/blob/075dc74d1ee62a8c6b7a8bf2b271364f01629d1e/environment/lib/python2.7/site-packages/nose/plugins/attrib.py#L126-L137
def get_method_attr(method, cls, attr_name, default = False): """Look up an attribute on a method/ function. If the attribute isn't found there, looking it up in the method's class, if any. """ Missing = object() value = getattr(method, attr_name, Missing) if value is Missing and cls is not...
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Look up an attribute on a method/ function. If the attribute isn't found there, looking it up in the method's class, if any.
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python
test
saltstack/salt
salt/modules/xapi_virt.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/xapi_virt.py#L200-L240
def vm_info(vm_=None): ''' Return detailed information about the vms. If you pass a VM name in as an argument then it will return info for just the named VM, otherwise it will return all VMs. CLI Example: .. code-block:: bash salt '*' virt.vm_info ''' with _get_xapi_session()...
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Return detailed information about the vms. If you pass a VM name in as an argument then it will return info for just the named VM, otherwise it will return all VMs. CLI Example: .. code-block:: bash salt '*' virt.vm_info
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python
train
henzk/ape
ape/__init__.py
https://github.com/henzk/ape/blob/a1b7ea5e5b25c42beffeaaa5c32d94ad82634819/ape/__init__.py#L198-L205
def superimpose(self, module): """ superimpose a task module on registered tasks''' :param module: ape tasks module that is superimposed on available ape tasks :return: None """ featuremonkey.compose(module, self._tasks) self._tasks.FEATURE_SELECTION.append(module...
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superimpose a task module on registered tasks''' :param module: ape tasks module that is superimposed on available ape tasks :return: None
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python
train
sublee/etc
etc/adapters/mock.py
https://github.com/sublee/etc/blob/f2be64604da5af0d7739cfacf36f55712f0fc5cb/etc/adapters/mock.py#L87-L101
def canonicalize(self, include_nodes=True, sorted=False): """Generates a canonical :class:`etc.Node` object from this mock node. """ node_class = Directory if self.dir else Value kwargs = {attr: getattr(self, attr) for attr in node_class.__slots__} if self.dir: if inc...
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Generates a canonical :class:`etc.Node` object from this mock node.
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python
train
wummel/linkchecker
linkcheck/strformat.py
https://github.com/wummel/linkchecker/blob/c2ce810c3fb00b895a841a7be6b2e78c64e7b042/linkcheck/strformat.py#L297-L312
def limit (s, length=72): """If the length of the string exceeds the given limit, it will be cut off and three dots will be appended. @param s: the string to limit @type s: string @param length: maximum length @type length: non-negative integer @return: limited string, at most length+3 char...
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If the length of the string exceeds the given limit, it will be cut off and three dots will be appended. @param s: the string to limit @type s: string @param length: maximum length @type length: non-negative integer @return: limited string, at most length+3 characters long
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python
train
tensorflow/tensor2tensor
tensor2tensor/layers/common_layers.py
https://github.com/tensorflow/tensor2tensor/blob/272500b6efe353aeb638d2745ed56e519462ca31/tensor2tensor/layers/common_layers.py#L4118-L4151
def build(self, input_shape=None): """Build `Layer`.""" input_shape = tf.TensorShape(input_shape).as_list() self.input_spec = layers().InputSpec(shape=input_shape) if not self.layer.built: self.layer.build(input_shape) self.layer.built = False if not hasattr(self.layer, "kernel"): ...
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Build `Layer`.
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python
train
treycucco/bidon
bidon/experimental/transfer_tracker.py
https://github.com/treycucco/bidon/blob/d9f24596841d0e69e8ac70a1d1a1deecea95e340/bidon/experimental/transfer_tracker.py#L54-L82
def setup(self): """Creates the default relations and transfers tables. The SQL used may not work on all databases. (It was written for SQLite3) """ cmds = [ """ create table if not exists relations ( id integer not null primary key, name text not null unique, ...
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Creates the default relations and transfers tables. The SQL used may not work on all databases. (It was written for SQLite3)
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python
train
Alveo/pyalveo
pyalveo/pyalveo.py
https://github.com/Alveo/pyalveo/blob/1e9eec22bc031bc9a08066f9966565a546e6242e/pyalveo/pyalveo.py#L1317-L1339
def add_to_item_list_by_name(self, item_urls, item_list_name): """ Instruct the server to add the given items to the specified Item List (which will be created if it does not already exist) :type item_urls: List or ItemGroup :param item_urls: List of URLs for the items to add, ...
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Instruct the server to add the given items to the specified Item List (which will be created if it does not already exist) :type item_urls: List or ItemGroup :param item_urls: List of URLs for the items to add, or an ItemGroup object :type item_list_name: String :par...
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python
train
minhhoit/yacms
yacms/core/views.py
https://github.com/minhhoit/yacms/blob/2921b706b7107c6e8c5f2bbf790ff11f85a2167f/yacms/core/views.py#L224-L231
def server_error(request, template_name="errors/500.html"): """ Mimics Django's error handler but adds ``STATIC_URL`` to the context. """ context = {"STATIC_URL": settings.STATIC_URL} t = get_template(template_name) return HttpResponseServerError(t.render(context, request))
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Mimics Django's error handler but adds ``STATIC_URL`` to the context.
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python
train
bastibe/SoundFile
soundfile.py
https://github.com/bastibe/SoundFile/blob/161e930da9c9ea76579b6ee18a131e10bca8a605/soundfile.py#L1472-L1480
def _format_info(format_int, format_flag=_snd.SFC_GET_FORMAT_INFO): """Return the ID and short description of a given format.""" format_info = _ffi.new("SF_FORMAT_INFO*") format_info.format = format_int _snd.sf_command(_ffi.NULL, format_flag, format_info, _ffi.sizeof("SF_FORMAT_INFO"...
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Return the ID and short description of a given format.
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python
train
danilobellini/audiolazy
examples/save_and_memoize_synth.py
https://github.com/danilobellini/audiolazy/blob/dba0a278937909980ed40b976d866b8e97c35dee/examples/save_and_memoize_synth.py#L92-L110
def new_note_track(env, synth): """ Audio track with the frequencies. Parameters ---------- env: Envelope Stream (which imposes the duration). synth: One-argument function that receives a frequency (in rad/sample) and returns a Stream instance (a synthesized note). Returns ------- Endles...
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Audio track with the frequencies. Parameters ---------- env: Envelope Stream (which imposes the duration). synth: One-argument function that receives a frequency (in rad/sample) and returns a Stream instance (a synthesized note). Returns ------- Endless Stream instance that joins synthesized...
[ "Audio", "track", "with", "the", "frequencies", "." ]
python
train
michael-lazar/rtv
rtv/packages/praw/objects.py
https://github.com/michael-lazar/rtv/blob/ccef2af042566ad384977028cf0bde01bc524dda/rtv/packages/praw/objects.py#L994-L1010
def get_upvoted(self, *args, **kwargs): """Return a listing of the Submissions the user has upvoted. :returns: get_content generator of Submission items. The additional parameters are passed directly into :meth:`.get_content`. Note: the `url` parameter cannot be altered. As a ...
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Return a listing of the Submissions the user has upvoted. :returns: get_content generator of Submission items. The additional parameters are passed directly into :meth:`.get_content`. Note: the `url` parameter cannot be altered. As a default, this listing is only accessible by the use...
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python
train
chinapnr/fishbase
fishbase/fish_data.py
https://github.com/chinapnr/fishbase/blob/23c5147a6bc0d8ed36409e55352ffb2c5b0edc82/fishbase/fish_data.py#L197-L281
def get_zone_info(cls, area_str, match_type='EXACT', result_type='LIST'): """ 输入包含省份、城市、地区信息的内容,返回地区编号; :param: * area_str: (string) 要查询的区域,省份、城市、地区信息,比如 北京市 * match_type: (string) 查询匹配模式,默认值 'EXACT',表示精确匹配,可选 'FUZZY',表示模糊查询 * result_type: (string) 返回结果数量类型,默...
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输入包含省份、城市、地区信息的内容,返回地区编号; :param: * area_str: (string) 要查询的区域,省份、城市、地区信息,比如 北京市 * match_type: (string) 查询匹配模式,默认值 'EXACT',表示精确匹配,可选 'FUZZY',表示模糊查询 * result_type: (string) 返回结果数量类型,默认值 'LIST',表示返回列表,可选 'SINGLE_STR',返回结果的第一个地区编号字符串 :returns: * 返回类型 根据 resu...
[ "输入包含省份、城市、地区信息的内容,返回地区编号;" ]
python
train
pyokagan/pyglreg
glreg.py
https://github.com/pyokagan/pyglreg/blob/68fa5a6c6cee8667879840fbbcc7d30f52852915/glreg.py#L533-L552
def get_requires(self, api=None, profile=None, support=None): """Returns filtered list of Require objects in this registry :param str api: Return Require objects with this api name or None to return all Require objects. :param str profile: Return Require objects with thi...
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Returns filtered list of Require objects in this registry :param str api: Return Require objects with this api name or None to return all Require objects. :param str profile: Return Require objects with this profile or None to return all Require objec...
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python
train
openid/JWTConnect-Python-CryptoJWT
src/cryptojwt/jwk/rsa.py
https://github.com/openid/JWTConnect-Python-CryptoJWT/blob/8863cfbfe77ca885084870b234a66b55bd52930c/src/cryptojwt/jwk/rsa.py#L244-L259
def cmp_private_numbers(pn1, pn2): """ Compare 2 sets of private numbers. This is for comparing 2 private RSA keys. :param pn1: The set of values belonging to the 1st key :param pn2: The set of values belonging to the 2nd key :return: True is the sets are the same otherwise False. """ i...
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Compare 2 sets of private numbers. This is for comparing 2 private RSA keys. :param pn1: The set of values belonging to the 1st key :param pn2: The set of values belonging to the 2nd key :return: True is the sets are the same otherwise False.
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python
train
opencobra/cobrapy
cobra/manipulation/delete.py
https://github.com/opencobra/cobrapy/blob/9d1987cdb3a395cf4125a3439c3b002ff2be2009/cobra/manipulation/delete.py#L36-L56
def prune_unused_reactions(cobra_model): """Remove reactions with no assigned metabolites, returns pruned model Parameters ---------- cobra_model: class:`~cobra.core.Model.Model` object the model to remove unused reactions from Returns ------- output_model: class:`~cobra.core.Model...
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Remove reactions with no assigned metabolites, returns pruned model Parameters ---------- cobra_model: class:`~cobra.core.Model.Model` object the model to remove unused reactions from Returns ------- output_model: class:`~cobra.core.Model.Model` object input model with unused r...
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python
valid
ethereum/lahja
lahja/endpoint.py
https://github.com/ethereum/lahja/blob/e3993c5892232887a11800ed3e66332febcee96b/lahja/endpoint.py#L188-L196
async def start_serving(self, connection_config: ConnectionConfig, loop: Optional[asyncio.AbstractEventLoop] = None) -> None: """ Start serving this :class:`~lahja.endpoint.Endpoint` so that it can receive events. Await until the :class:`~l...
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Start serving this :class:`~lahja.endpoint.Endpoint` so that it can receive events. Await until the :class:`~lahja.endpoint.Endpoint` is ready.
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python
train
UCBerkeleySETI/blimpy
blimpy/calib_utils/fluxcal.py
https://github.com/UCBerkeleySETI/blimpy/blob/b8822d3e3e911944370d84371a91fa0c29e9772e/blimpy/calib_utils/fluxcal.py#L92-L137
def integrate_calib(name,chan_per_coarse,fullstokes=False,**kwargs): ''' Folds Stokes I noise diode data and integrates along coarse channels Parameters ---------- name : str Path to noise diode filterbank file chan_per_coarse : int Number of frequency bins per coarse channel ...
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Folds Stokes I noise diode data and integrates along coarse channels Parameters ---------- name : str Path to noise diode filterbank file chan_per_coarse : int Number of frequency bins per coarse channel fullstokes : boolean Use fullstokes=True if data is in IQUV format or j...
[ "Folds", "Stokes", "I", "noise", "diode", "data", "and", "integrates", "along", "coarse", "channels" ]
python
test
erdc/RAPIDpy
RAPIDpy/postprocess/goodness_of_fit.py
https://github.com/erdc/RAPIDpy/blob/50e14e130554b254a00ff23b226cd7e4c6cfe91a/RAPIDpy/postprocess/goodness_of_fit.py#L21-L32
def filter_nan(s, o): """ this functions removed the data from simulated and observed data whereever the observed data contains nan this is used by all other functions, otherwise they will produce nan as output """ data = np.array([s.flatten(), o.flatten()]) data = ...
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this functions removed the data from simulated and observed data whereever the observed data contains nan this is used by all other functions, otherwise they will produce nan as output
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python
train
wbond/oscrypto
oscrypto/_openssl/_libcrypto.py
https://github.com/wbond/oscrypto/blob/af778bf1c88bf6c4a7342f5353b130686a5bbe1c/oscrypto/_openssl/_libcrypto.py#L57-L85
def handle_openssl_error(result, exception_class=None): """ Checks if an error occured, and if so throws an OSError containing the last OpenSSL error message :param result: An integer result code - 1 or greater indicates success :param exception_class: The exception class to use fo...
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Checks if an error occured, and if so throws an OSError containing the last OpenSSL error message :param result: An integer result code - 1 or greater indicates success :param exception_class: The exception class to use for the exception if an error occurred :raises: OSError -...
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python
valid
rhgrant10/Groupy
groupy/utils.py
https://github.com/rhgrant10/Groupy/blob/ffd8cac57586fa1c218e3b4bfaa531142c3be766/groupy/utils.py#L89-L104
def find(self, objects): """Find exactly one match in the list of objects. :param objects: objects to filter :type objects: :class:`list` :return: the one matching object :raises groupy.exceptions.NoMatchesError: if no objects match :raises groupy.exceptions.MultipleMatc...
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Find exactly one match in the list of objects. :param objects: objects to filter :type objects: :class:`list` :return: the one matching object :raises groupy.exceptions.NoMatchesError: if no objects match :raises groupy.exceptions.MultipleMatchesError: if multiple objects match
[ "Find", "exactly", "one", "match", "in", "the", "list", "of", "objects", "." ]
python
train
broadinstitute/fiss
firecloud/api.py
https://github.com/broadinstitute/fiss/blob/dddf91547479506dbbafb69ec84d44dcc4a94ab4/firecloud/api.py#L918-L935
def update_repository_config_acl(namespace, config, snapshot_id, acl_updates): """Set configuration permissions. The configuration should exist in the methods repository. Args: namespace (str): Configuration namespace config (str): Configuration name snapshot_id (int): snapshot_id ...
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Set configuration permissions. The configuration should exist in the methods repository. Args: namespace (str): Configuration namespace config (str): Configuration name snapshot_id (int): snapshot_id of the method acl_updates (list(dict)): List of access control updates Sw...
[ "Set", "configuration", "permissions", "." ]
python
train
saltstack/salt
salt/states/logadm.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/states/logadm.py#L117-L168
def remove(name, log_file=None): ''' Remove a log from the logadm configuration name : string entryname log_file : string (optional) log file path .. note:: If log_file is specified it will be used instead of the entry name. ''' ret = {'name': name, 'cha...
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Remove a log from the logadm configuration name : string entryname log_file : string (optional) log file path .. note:: If log_file is specified it will be used instead of the entry name.
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python
train
Duke-GCB/DukeDSClient
ddsc/versioncheck.py
https://github.com/Duke-GCB/DukeDSClient/blob/117f68fb9bae82e4c81ea487ad5d61ac350f3726/ddsc/versioncheck.py#L18-L31
def get_pypi_version(): """ Returns the version info from pypi for this app. """ try: response = requests.get(PYPI_URL, timeout=HALF_SECOND_TIMEOUT) response.raise_for_status() data = response.json() version_str = data["info"]["version"] return _parse_version_str(...
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Returns the version info from pypi for this app.
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python
train
learningequality/ricecooker
ricecooker/utils/jsontrees.py
https://github.com/learningequality/ricecooker/blob/2f0385282500cb77ef2894646c6f9ce11bd7a853/ricecooker/utils/jsontrees.py#L48-L56
def read_tree_from_json(srcpath): """ Load ricecooker json tree data from json file at `srcpath`. """ with open(srcpath) as infile: json_tree = json.load(infile) if json_tree is None: raise ValueError('Could not find ricecooker json tree') return json_tree
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Load ricecooker json tree data from json file at `srcpath`.
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python
train
vtkiorg/vtki
vtki/common.py
https://github.com/vtkiorg/vtki/blob/5ccad7ae6d64a03e9594c9c7474c8aab3eb22dd1/vtki/common.py#L907-L920
def update(self, data): """ Update this dictionary with th key-value pairs from a given dictionary """ if not isinstance(data, dict): raise TypeError('Data to update must be in a dictionary.') for k, v in data.items(): arr = np.array(v) ...
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Update this dictionary with th key-value pairs from a given dictionary
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python
train
RJT1990/pyflux
pyflux/ssm/dynlin.py
https://github.com/RJT1990/pyflux/blob/297f2afc2095acd97c12e827dd500e8ea5da0c0f/pyflux/ssm/dynlin.py#L115-L138
def _ss_matrices(self, beta): """ Creates the state space matrices required Parameters ---------- beta : np.array Contains untransformed starting values for latent variables Returns ---------- T, Z, R, Q, H : np.array State space matrices...
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Creates the state space matrices required Parameters ---------- beta : np.array Contains untransformed starting values for latent variables Returns ---------- T, Z, R, Q, H : np.array State space matrices used in KFS algorithm
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python
train
apache/incubator-mxnet
python/mxnet/recordio.py
https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/python/mxnet/recordio.py#L358-L391
def pack(header, s): """Pack a string into MXImageRecord. Parameters ---------- header : IRHeader Header of the image record. ``header.label`` can be a number or an array. See more detail in ``IRHeader``. s : str Raw image string to be packed. Returns ------- s ...
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Pack a string into MXImageRecord. Parameters ---------- header : IRHeader Header of the image record. ``header.label`` can be a number or an array. See more detail in ``IRHeader``. s : str Raw image string to be packed. Returns ------- s : str The packed str...
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python
train
saltstack/salt
salt/states/nexus.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/states/nexus.py#L27-L110
def downloaded(name, artifact, target_dir='/tmp', target_file=None): ''' Ensures that the artifact from nexus exists at given location. If it doesn't exist, then it will be downloaded. If it already exists then the checksum of existing file is checked against checksum in nexus. If it is different then t...
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Ensures that the artifact from nexus exists at given location. If it doesn't exist, then it will be downloaded. If it already exists then the checksum of existing file is checked against checksum in nexus. If it is different then the step will fail. artifact Details of the artifact to be downloaded...
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python
train
hishnash/djangochannelsrestframework
djangochannelsrestframework/consumers.py
https://github.com/hishnash/djangochannelsrestframework/blob/19fdec7efd785b1a94d19612a8de934e1948e344/djangochannelsrestframework/consumers.py#L104-L123
async def handle_exception(self, exc: Exception, action: str, request_id): """ Handle any exception that occurs, by sending an appropriate message """ if isinstance(exc, APIException): await self.reply( action=action, errors=self._format_errors...
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Handle any exception that occurs, by sending an appropriate message
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python
train
dschreij/python-mediadecoder
mediadecoder/decoder.py
https://github.com/dschreij/python-mediadecoder/blob/f01b02d790f2abc52d9792e43076cf4cb7d3ce51/mediadecoder/decoder.py#L345-L357
def __calculate_audio_frames(self): """ Aligns audio with video. This should be called for instance after a seeking operation or resuming from a pause. """ if self.audioformat is None: return start_frame = self.clock.current_frame totalsize = int(self.clip.audio.fps*self.clip.audio.duration) self.au...
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Aligns audio with video. This should be called for instance after a seeking operation or resuming from a pause.
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python
train