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kivy/python-for-android
pythonforandroid/bootstraps/pygame/build/buildlib/jinja2.egg/jinja2/compiler.py
https://github.com/kivy/python-for-android/blob/8e0e8056bc22e4d5bd3398a6b0301f38ff167933/pythonforandroid/bootstraps/pygame/build/buildlib/jinja2.egg/jinja2/compiler.py#L861-L878
def visit_Block(self, node, frame): """Call a block and register it for the template.""" level = 1 if frame.toplevel: # if we know that we are a child template, there is no need to # check if we are one if self.has_known_extends: return ...
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Call a block and register it for the template.
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python
train
evhub/coconut
coconut/compiler/grammar.py
https://github.com/evhub/coconut/blob/ff97177344e7604e89a0a98a977a87ed2a56fc6d/coconut/compiler/grammar.py#L445-L461
def op_funcdef_handle(tokens): """Process infix defs.""" func, base_args = get_infix_items(tokens) args = [] for arg in base_args[:-1]: rstrip_arg = arg.rstrip() if not rstrip_arg.endswith(unwrapper): if not rstrip_arg.endswith(","): arg += ", " el...
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Process infix defs.
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python
train
iotile/coretools
iotileemulate/iotile/emulate/reference/reference_device.py
https://github.com/iotile/coretools/blob/2d794f5f1346b841b0dcd16c9d284e9bf2f3c6ec/iotileemulate/iotile/emulate/reference/reference_device.py#L160-L169
def close_streaming_interface(self): """Called when someone closes the streaming interface to the device. This method will automatically notify sensor_graph that there is a no longer a streaming interface opened. """ super(ReferenceDevice, self).close_streaming_interface() ...
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Called when someone closes the streaming interface to the device. This method will automatically notify sensor_graph that there is a no longer a streaming interface opened.
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python
train
saltstack/salt
salt/runners/bgp.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/runners/bgp.py#L203-L225
def _display_runner(rows, labels, title, display=_DEFAULT_DISPLAY, outputter=_DEFAULT_OUTPUTTER): ''' Display or return the rows. ''' if display: if outputter == 'table': ret = salt.output.out_format({'ro...
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Display or return the rows.
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python
train
saltstack/salt
salt/modules/elasticsearch.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/elasticsearch.py#L517-L537
def index_delete(index, hosts=None, profile=None): ''' Delete an index index Index name CLI example:: salt myminion elasticsearch.index_delete testindex ''' es = _get_instance(hosts, profile) try: result = es.indices.delete(index=index) return result.get(...
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Delete an index index Index name CLI example:: salt myminion elasticsearch.index_delete testindex
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python
train
insightindustry/validator-collection
validator_collection/validators.py
https://github.com/insightindustry/validator-collection/blob/8c8047a0fa36cc88a021771279898278c4cc98e3/validator_collection/validators.py#L2422-L2471
def ip_address(value, allow_empty = False, **kwargs): """Validate that ``value`` is a valid IP address. .. note:: First, the validator will check if the address is a valid IPv6 address. If that doesn't work, the validator will check if the address is a valid IPv...
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Validate that ``value`` is a valid IP address. .. note:: First, the validator will check if the address is a valid IPv6 address. If that doesn't work, the validator will check if the address is a valid IPv4 address. If neither works, the validator will raise an error (as always). :pa...
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python
train
openstates/billy
billy/web/public/views/bills.py
https://github.com/openstates/billy/blob/5fc795347f12a949e410a8cfad0c911ea6bced67/billy/web/public/views/bills.py#L404-L425
def vote(request, abbr, vote_id): ''' Context: - abbr - metadata - bill - vote - nav_active Templates: - vote.html ''' vote = db.votes.find_one(vote_id) if vote is None: raise Http404('no such vote: {0}'.format(vote_id)) bill = vote.bi...
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Context: - abbr - metadata - bill - vote - nav_active Templates: - vote.html
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python
train
tanghaibao/goatools
goatools/gosubdag/godag_rcnt_init.py
https://github.com/tanghaibao/goatools/blob/407682e573a108864a79031f8ca19ee3bf377626/goatools/gosubdag/godag_rcnt_init.py#L71-L83
def get_depth2goobjs(go2obj, max_depth=2): """Init depth2goobjs using list sorted by depth, get level-00/01 GO terms.""" depth2goobjs = {d:list() for d in range(max_depth+1)} goid_seen = set() for _, goobj in sorted(go2obj.items(), key=lambda t: t[1].depth): # Save depth-00, ...
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Init depth2goobjs using list sorted by depth, get level-00/01 GO terms.
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python
train
dshean/demcoreg
demcoreg/dem_mask.py
https://github.com/dshean/demcoreg/blob/abd6be75d326b35f52826ee30dff01f9e86b4b52/demcoreg/dem_mask.py#L143-L158
def get_bareground_mask(bareground_ds, bareground_thresh=60, out_fn=None): """Generate raster mask for exposed bare ground from global bareground data """ print("Loading bareground") b = bareground_ds.GetRasterBand(1) l = b.ReadAsArray() print("Masking pixels with <%0.1f%% bare ground" % baregro...
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Generate raster mask for exposed bare ground from global bareground data
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python
train
PyCQA/pylint
pylint/graph.py
https://github.com/PyCQA/pylint/blob/2bf5c61a3ff6ae90613b81679de42c0f19aea600/pylint/graph.py#L158-L170
def get_cycles(graph_dict, vertices=None): """given a dictionary representing an ordered graph (i.e. key are vertices and values is a list of destination vertices representing edges), return a list of detected cycles """ if not graph_dict: return () result = [] if vertices is None: ...
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given a dictionary representing an ordered graph (i.e. key are vertices and values is a list of destination vertices representing edges), return a list of detected cycles
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python
test
peterwittek/ncpol2sdpa
ncpol2sdpa/sdp_relaxation.py
https://github.com/peterwittek/ncpol2sdpa/blob/bce75d524d0b9d0093f32e3a0a5611f8589351a7/ncpol2sdpa/sdp_relaxation.py#L1290-L1434
def get_relaxation(self, level, objective=None, inequalities=None, equalities=None, substitutions=None, momentinequalities=None, momentequalities=None, momentsubstitutions=None, removeequalities=False, extramonomials=None, ...
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Get the SDP relaxation of a noncommutative polynomial optimization problem. :param level: The level of the relaxation. The value -1 will skip automatic monomial generation and use only the monomials supplied by the option `extramonomials`. :type level...
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python
train
Grk0/python-libconf
libconf.py
https://github.com/Grk0/python-libconf/blob/9c4cf5f56d56ebbc1fe0e1596807218b7d5d5da4/libconf.py#L575-L606
def get_dump_type(value): '''Get the libconfig datatype of a value Return values: ``'d'`` (dict), ``'l'`` (list), ``'a'`` (array), ``'i'`` (integer), ``'i64'`` (long integer), ``'b'`` (bool), ``'f'`` (float), or ``'s'`` (string). Produces the proper type for LibconfList, LibconfArray, LibconfInt64...
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Get the libconfig datatype of a value Return values: ``'d'`` (dict), ``'l'`` (list), ``'a'`` (array), ``'i'`` (integer), ``'i64'`` (long integer), ``'b'`` (bool), ``'f'`` (float), or ``'s'`` (string). Produces the proper type for LibconfList, LibconfArray, LibconfInt64 instances.
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python
train
oceanprotocol/squid-py
squid_py/ocean/ocean_conditions.py
https://github.com/oceanprotocol/squid-py/blob/43a5b7431627e4c9ab7382ed9eb8153e96ed4483/squid_py/ocean/ocean_conditions.py#L28-L40
def grant_access(self, agreement_id, did, grantee_address, account): """ Grant access condition. :param agreement_id: id of the agreement, hex str :param did: DID, str :param grantee_address: Address, hex str :param account: Account :return: """ r...
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Grant access condition. :param agreement_id: id of the agreement, hex str :param did: DID, str :param grantee_address: Address, hex str :param account: Account :return:
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python
train
GPflow/GPflow
gpflow/training/monitor.py
https://github.com/GPflow/GPflow/blob/549394f0b1b0696c7b521a065e49bdae6e7acf27/gpflow/training/monitor.py#L238-L246
def global_step(self) -> int: """ Evaluates the value of the global step variable if it is set, otherwise returns the current iteration number. """ if self.session is None or self.global_step_tensor is None: return self.iteration_no + self.init_global_step els...
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python
train
textX/textX
textx/metamodel.py
https://github.com/textX/textX/blob/5796ac38116ad86584392dbecdbf923ede746361/textx/metamodel.py#L619-L634
def metamodel_from_file(file_name, **kwargs): """ Creates new metamodel from the given file. Args: file_name(str): The name of the file with textX language description. other params: See metamodel_from_str. """ with codecs.open(file_name, 'r', 'utf-8') as f: lang_desc = f.re...
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Creates new metamodel from the given file. Args: file_name(str): The name of the file with textX language description. other params: See metamodel_from_str.
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python
train
sailthru/relay
relay/plugins/__init__.py
https://github.com/sailthru/relay/blob/995209346c6663675d96d0cbff3bb67b9758c8e2/relay/plugins/__init__.py#L155-L172
def stop_if_mostly_diverging(errdata): """This is an example stop condition that asks Relay to quit if the error difference between consecutive samples is increasing more than half of the time. It's quite sensitive and designed for the demo, so you probably shouldn't use this is a production settin...
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This is an example stop condition that asks Relay to quit if the error difference between consecutive samples is increasing more than half of the time. It's quite sensitive and designed for the demo, so you probably shouldn't use this is a production setting
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python
train
tensorflow/mesh
mesh_tensorflow/ops.py
https://github.com/tensorflow/mesh/blob/3921196e5e43302e820da0a87329f25d7e2a3016/mesh_tensorflow/ops.py#L4456-L4483
def _parse_string_to_list_of_pairs(s, seconds_to_int=False): r"""Parses a string into a list of pairs. In the input string, each pair is separated by a colon, and the delimiters between pairs are any of " ,.;". e.g. "rows:32,cols:32" Args: s: str to parse. seconds_to_int: Boolean. If True, then the...
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r"""Parses a string into a list of pairs. In the input string, each pair is separated by a colon, and the delimiters between pairs are any of " ,.;". e.g. "rows:32,cols:32" Args: s: str to parse. seconds_to_int: Boolean. If True, then the second elements are returned as integers; otherwise the...
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python
train
openstack/python-scciclient
scciclient/irmc/elcm.py
https://github.com/openstack/python-scciclient/blob/4585ce2f76853b9773fb190ca0cfff0aa04a7cf8/scciclient/irmc/elcm.py#L821-L842
def set_secure_boot_mode(irmc_info, enable): """Enable/Disable secure boot on the server. :param irmc_info: node info :param enable: True, if secure boot needs to be enabled for next boot, else False. """ bios_config_data = { 'Server': { '@Version': '1.01', ...
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Enable/Disable secure boot on the server. :param irmc_info: node info :param enable: True, if secure boot needs to be enabled for next boot, else False.
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python
train
rabitt/pysox
sox/core.py
https://github.com/rabitt/pysox/blob/eae89bde74567136ec3f723c3e6b369916d9b837/sox/core.py#L65-L85
def _get_valid_formats(): ''' Calls SoX help for a lists of audio formats available with the current install of SoX. Returns: -------- formats : list List of audio file extensions that SoX can process. ''' if NO_SOX: return [] so = subprocess.check_output(['sox', '-h']...
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Calls SoX help for a lists of audio formats available with the current install of SoX. Returns: -------- formats : list List of audio file extensions that SoX can process.
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python
valid
ibis-project/ibis
ibis/expr/rules.py
https://github.com/ibis-project/ibis/blob/1e39a5fd9ef088b45c155e8a5f541767ee8ef2e7/ibis/expr/rules.py#L55-L69
def cast(source, target): """Currently Literal to *Scalar implicit casts are allowed""" import ibis.expr.operations as ops # TODO: don't use ops here if not castable(source, target): raise com.IbisTypeError('Source is not castable to target type!') # currently it prevents column -> scalar imp...
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Currently Literal to *Scalar implicit casts are allowed
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python
train
tensorflow/cleverhans
cleverhans/future/tf2/utils_tf.py
https://github.com/tensorflow/cleverhans/blob/97488e215760547b81afc53f5e5de8ba7da5bd98/cleverhans/future/tf2/utils_tf.py#L5-L33
def clip_eta(eta, ord, eps): """ Helper function to clip the perturbation to epsilon norm ball. :param eta: A tensor with the current perturbation. :param ord: Order of the norm (mimics Numpy). Possible values: np.inf, 1 or 2. :param eps: Epsilon, bound of the perturbation. """ # Clipping p...
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Helper function to clip the perturbation to epsilon norm ball. :param eta: A tensor with the current perturbation. :param ord: Order of the norm (mimics Numpy). Possible values: np.inf, 1 or 2. :param eps: Epsilon, bound of the perturbation.
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python
train
TurboGears/gearbox
gearbox/commands/serve.py
https://github.com/TurboGears/gearbox/blob/df496ab28050ce6a4cc4c502488f5c5812f2baff/gearbox/commands/serve.py#L313-L326
def parse_vars(self, args): """ Given variables like ``['a=b', 'c=d']`` turns it into ``{'a': 'b', 'c': 'd'}`` """ result = {} for arg in args: if '=' not in arg: raise ValueError( 'Variable assignment %r invalid (no "=")' ...
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Given variables like ``['a=b', 'c=d']`` turns it into ``{'a': 'b', 'c': 'd'}``
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python
train
draperjames/qtpandas
qtpandas/models/DataFrameModelManager.py
https://github.com/draperjames/qtpandas/blob/64294fb69f1839e53dee5ea453337266bfaf24f4/qtpandas/models/DataFrameModelManager.py#L111-L129
def set_model(self, df_model, file_path): """ Sets a DataFrameModel and registers it to the given file_path. :param df_model: (DataFrameModel) The DataFrameModel to register. :param file_path: The file path to associate with the DataFrameModel. *Overri...
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Sets a DataFrameModel and registers it to the given file_path. :param df_model: (DataFrameModel) The DataFrameModel to register. :param file_path: The file path to associate with the DataFrameModel. *Overrides the current filePath on the DataFrameModel (if any) ...
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python
train
Beyond-Digital/django-gaekit
gaekit/boot.py
https://github.com/Beyond-Digital/django-gaekit/blob/b587acd52b5cfd48217a70920d4b61d5f923c8c5/gaekit/boot.py#L1-L17
def break_sandbox(): """Patches sandbox to add match-all regex to sandbox whitelist """ class EvilCM(object): def __enter__(self): return self def __exit__(self, exc_type, exc, tb): import re tb.tb_next.tb_next.tb_next.tb_frame.f_locals[ '...
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Patches sandbox to add match-all regex to sandbox whitelist
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python
train
econ-ark/HARK
HARK/ConsumptionSaving/ConsIndShockModel.py
https://github.com/econ-ark/HARK/blob/3d184153a189e618a87c9540df1cd12044039cc5/HARK/ConsumptionSaving/ConsIndShockModel.py#L635-L654
def defUtilityFuncs(self): ''' Defines CRRA utility function for this period (and its derivatives, and their inverses), saving them as attributes of self for other methods to use. Parameters ---------- none Returns ------- none ''...
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Defines CRRA utility function for this period (and its derivatives, and their inverses), saving them as attributes of self for other methods to use. Parameters ---------- none Returns ------- none
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python
train
mbedmicro/pyOCD
pyocd/flash/flash_builder.py
https://github.com/mbedmicro/pyOCD/blob/41a174718a9739f3cbe785c2ba21cb7fd1310c6f/pyocd/flash/flash_builder.py#L174-L212
def add_data(self, addr, data): """! @brief Add a block of data to be programmed. @note Programming does not start until the method program() is called. @param self @param addr Base address of the block of data passed to this method. The entire block of data must be...
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! @brief Add a block of data to be programmed. @note Programming does not start until the method program() is called. @param self @param addr Base address of the block of data passed to this method. The entire block of data must be contained within the flash memory region a...
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python
train
django-danceschool/django-danceschool
danceschool/financial/admin.py
https://github.com/django-danceschool/django-danceschool/blob/bb08cbf39017a812a5a94bdb4ea34170bf1a30ba/danceschool/financial/admin.py#L382-L389
def resetStaffCompensationInfo(self, request, queryset): ''' This action is added to the list for staff member to permit bulk reseting to category defaults of compensation information for staff members. ''' selected = request.POST.getlist(admin.ACTION_CHECKBOX_NAME) ct = ContentType.objects.get_...
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This action is added to the list for staff member to permit bulk reseting to category defaults of compensation information for staff members.
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python
train
burnash/gspread
gspread/models.py
https://github.com/burnash/gspread/blob/0e8debe208095aeed3e3e7136c2fa5cd74090946/gspread/models.py#L675-L705
def col_values(self, col, value_render_option='FORMATTED_VALUE'): """Returns a list of all values in column `col`. Empty cells in this list will be rendered as :const:`None`. :param col: Column number. :type col: int :param value_render_option: (optional) Determines how values ...
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Returns a list of all values in column `col`. Empty cells in this list will be rendered as :const:`None`. :param col: Column number. :type col: int :param value_render_option: (optional) Determines how values should be rendered in the the output. See...
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python
train
jangler/readlike
readlike.py
https://github.com/jangler/readlike/blob/2901260c50bd1aecfb981c3990e0c6333de8aac8/readlike.py#L51-L55
def _backward_delete_char(text, pos): """Delete the character behind pos.""" if pos == 0: return text, pos return text[:pos - 1] + text[pos:], pos - 1
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Delete the character behind pos.
[ "Delete", "the", "character", "behind", "pos", "." ]
python
train
O365/python-o365
O365/mailbox.py
https://github.com/O365/python-o365/blob/02a71cf3775cc6a3c042e003365d6a07c8c75a73/O365/mailbox.py#L434-L468
def move_folder(self, to_folder, *, update_parent_if_changed=True): """ Move this folder to another folder :param to_folder: the destination Folder/folder_id to move into :type to_folder: mailbox.Folder or str :param bool update_parent_if_changed: updates self.parent with the n...
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Move this folder to another folder :param to_folder: the destination Folder/folder_id to move into :type to_folder: mailbox.Folder or str :param bool update_parent_if_changed: updates self.parent with the new parent Folder if changed :return: The new folder after copying ...
[ "Move", "this", "folder", "to", "another", "folder" ]
python
train
Nic30/hwt
hwt/simulator/hdlSimulator.py
https://github.com/Nic30/hwt/blob/8cbb399e326da3b22c233b98188a9d08dec057e6/hwt/simulator/hdlSimulator.py#L532-L536
def add_process(self, proc) -> None: """ Add process to events with default priority on current time """ self._events.push(self.now, PRIORITY_NORMAL, proc)
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Add process to events with default priority on current time
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python
test
gatagat/lap
lap/lapmod.py
https://github.com/gatagat/lap/blob/c2b6309ba246d18205a71228cdaea67210e1a039/lap/lapmod.py#L273-L341
def lapmod(n, cc, ii, kk, fast=True, return_cost=True, fp_version=FP_DYNAMIC): """Solve sparse linear assignment problem using Jonker-Volgenant algorithm. n: number of rows of the assignment cost matrix cc: 1D array of all finite elements of the assignement cost matrix ii: 1D array of indice...
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Solve sparse linear assignment problem using Jonker-Volgenant algorithm. n: number of rows of the assignment cost matrix cc: 1D array of all finite elements of the assignement cost matrix ii: 1D array of indices of the row starts in cc. The following must hold: ii[0] = 0 and ii[n+1] = len(cc). ...
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python
train
edx/completion
completion/services.py
https://github.com/edx/completion/blob/5c23806f6db69ce6be3fd068fc5b5fdf4d66bd60/completion/services.py#L114-L120
def blocks_to_mark_complete_on_view(self, blocks): """ Returns a set of blocks which should be marked complete on view and haven't been yet. """ blocks = {block for block in blocks if self.can_mark_block_complete_on_view(block)} completions = self.get_completions({block.location ...
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Returns a set of blocks which should be marked complete on view and haven't been yet.
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python
train
i3visio/osrframework
osrframework/thirdparties/pipl_com/lib/search.py
https://github.com/i3visio/osrframework/blob/83437f4c14c9c08cb80a896bd9834c77f6567871/osrframework/thirdparties/pipl_com/lib/search.py#L180-L207
def _prepare_filtering_params(domain=None, category=None, sponsored_source=None, has_field=None, has_fields=None, query_params_match=None, query_person_match=None, **kwargs): """Transform the params to th...
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Transform the params to the API format, return a list of params.
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python
train
materialsproject/pymatgen
pymatgen/util/serialization.py
https://github.com/materialsproject/pymatgen/blob/4ca558cf72f8d5f8a1f21dfdfc0181a971c186da/pymatgen/util/serialization.py#L77-L98
def persistent_load(self, pid): """ This method is invoked whenever a persistent ID is encountered. Here, pid is the tuple returned by PmgPickler. """ try: type_tag, key_id = pid except Exception as exc: # Sometimes we get a string such as ('Elemen...
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This method is invoked whenever a persistent ID is encountered. Here, pid is the tuple returned by PmgPickler.
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python
train
quikmile/trellio
trellio/utils/log.py
https://github.com/quikmile/trellio/blob/e8b050077562acf32805fcbb9c0c162248a23c62/trellio/utils/log.py#L21-L32
def formatTime(self, record, datefmt=None): # noqa """ Overrides formatTime method to use datetime module instead of time module to display time in microseconds. Time module by default does not resolve time to microseconds. """ if datefmt: s = datetime.dateti...
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Overrides formatTime method to use datetime module instead of time module to display time in microseconds. Time module by default does not resolve time to microseconds.
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python
train
iotaledger/iota.lib.py
iota/adapter/wrappers.py
https://github.com/iotaledger/iota.lib.py/blob/97cdd1e241498446b46157b79b2a1ea2ec6d387a/iota/adapter/wrappers.py#L77-L98
def add_route(self, command, adapter): # type: (Text, AdapterSpec) -> RoutingWrapper """ Adds a route to the wrapper. :param command: The name of the command to route (e.g., "attachToTangle"). :param adapter: The adapter object or URI to route requests t...
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Adds a route to the wrapper. :param command: The name of the command to route (e.g., "attachToTangle"). :param adapter: The adapter object or URI to route requests to.
[ "Adds", "a", "route", "to", "the", "wrapper", "." ]
python
test
RJT1990/pyflux
pyflux/arma/nnarx.py
https://github.com/RJT1990/pyflux/blob/297f2afc2095acd97c12e827dd500e8ea5da0c0f/pyflux/arma/nnarx.py#L430-L447
def general_neg_loglik(self, beta): """ Calculates the negative log-likelihood of the model Parameters ---------- beta : np.ndarray Contains untransformed starting values for latent variables Returns ---------- The negative logliklihood of the model ...
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Calculates the negative log-likelihood of the model Parameters ---------- beta : np.ndarray Contains untransformed starting values for latent variables Returns ---------- The negative logliklihood of the model
[ "Calculates", "the", "negative", "log", "-", "likelihood", "of", "the", "model" ]
python
train
bspaans/python-mingus
mingus/extra/tunings.py
https://github.com/bspaans/python-mingus/blob/aa5a5d992d45ada61be0f9f86261380731bd7749/mingus/extra/tunings.py#L95-L143
def find_fingering(self, notes, max_distance=4, not_strings=[]): """Return a list [(string, fret)] of possible fingerings for 'notes'. The notes parameter should be a list of strings or Notes or a NoteContainer; max_distance denotes the maximum distance between frets; not_string...
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Return a list [(string, fret)] of possible fingerings for 'notes'. The notes parameter should be a list of strings or Notes or a NoteContainer; max_distance denotes the maximum distance between frets; not_strings can be used to disclude certain strings and is used internally to ...
[ "Return", "a", "list", "[", "(", "string", "fret", ")", "]", "of", "possible", "fingerings", "for", "notes", "." ]
python
train
dpgaspar/Flask-AppBuilder
flask_appbuilder/security/sqla/manager.py
https://github.com/dpgaspar/Flask-AppBuilder/blob/c293734c1b86e176a3ba57ee2deab6676d125576/flask_appbuilder/security/sqla/manager.py#L344-L355
def find_permission_view_menu(self, permission_name, view_menu_name): """ Finds and returns a PermissionView by names """ permission = self.find_permission(permission_name) view_menu = self.find_view_menu(view_menu_name) if permission and view_menu: return...
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Finds and returns a PermissionView by names
[ "Finds", "and", "returns", "a", "PermissionView", "by", "names" ]
python
train
JdeRobot/base
src/drivers/MAVLinkServer/MAVProxy/pymavlink/quaternion.py
https://github.com/JdeRobot/base/blob/303b18992785b2fe802212f2d758a60873007f1f/src/drivers/MAVLinkServer/MAVProxy/pymavlink/quaternion.py#L551-L561
def _dcm_array_to_matrix3(self, dcm): """ Converts dcm array into Matrix3 :param dcm: 3x3 dcm array :returns: Matrix3 """ assert(dcm.shape == (3, 3)) a = Vector3(dcm[0][0], dcm[0][1], dcm[0][2]) b = Vector3(dcm[1][0], dcm[1][1], dcm[1][2]) c = Vect...
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Converts dcm array into Matrix3 :param dcm: 3x3 dcm array :returns: Matrix3
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python
train
openthread/openthread
tools/harness-thci/OpenThread.py
https://github.com/openthread/openthread/blob/0208d10563aa21c518092985c78ecf9cd223ab74/tools/harness-thci/OpenThread.py#L1988-L2021
def scanJoiner(self, xEUI='*', strPSKd='threadjpaketest'): """scan Joiner Args: xEUI: Joiner's EUI-64 strPSKd: Joiner's PSKd for commissioning Returns: True: successful to add Joiner's steering data False: fail to add Joiner's steering data ...
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scan Joiner Args: xEUI: Joiner's EUI-64 strPSKd: Joiner's PSKd for commissioning Returns: True: successful to add Joiner's steering data False: fail to add Joiner's steering data
[ "scan", "Joiner" ]
python
train
log2timeline/plaso
plaso/preprocessors/macos.py
https://github.com/log2timeline/plaso/blob/9c564698d2da3ffbe23607a3c54c0582ea18a6cc/plaso/preprocessors/macos.py#L47-L93
def _ParseFileData(self, knowledge_base, file_object): """Parses file content (data) for a preprocessing attribute. Args: knowledge_base (KnowledgeBase): to fill with preprocessing information. file_object (dfvfs.FileIO): file-like object that contains the artifact value data. Raises...
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Parses file content (data) for a preprocessing attribute. Args: knowledge_base (KnowledgeBase): to fill with preprocessing information. file_object (dfvfs.FileIO): file-like object that contains the artifact value data. Raises: errors.PreProcessFail: if the preprocessing fails.
[ "Parses", "file", "content", "(", "data", ")", "for", "a", "preprocessing", "attribute", "." ]
python
train
Clinical-Genomics/scout
scout/server/blueprints/cases/controllers.py
https://github.com/Clinical-Genomics/scout/blob/90a551e2e1653a319e654c2405c2866f93d0ebb9/scout/server/blueprints/cases/controllers.py#L261-L306
def coverage_report_contents(store, institute_obj, case_obj, base_url): """Posts a request to chanjo-report and capture the body of the returned response to include it in case report Args: store(adapter.MongoAdapter) institute_obj(models.Institute) case_obj(models.Case) base_url...
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Posts a request to chanjo-report and capture the body of the returned response to include it in case report Args: store(adapter.MongoAdapter) institute_obj(models.Institute) case_obj(models.Case) base_url(str): base url of server Returns: coverage_data(str): string rend...
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python
test
BoGoEngine/bogo-python
bogo/core.py
https://github.com/BoGoEngine/bogo-python/blob/9b85329a408ded4cead3539cecba12984d5d7650/bogo/core.py#L469-L489
def _can_undo(comps, trans_list): """ Return whether a components can be undone with one of the transformation in trans_list. """ comps = list(comps) accent_list = list(map(accent.get_accent_char, comps[1])) mark_list = list(map(mark.get_mark_char, utils.join(comps))) action_list = list(...
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Return whether a components can be undone with one of the transformation in trans_list.
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python
train
noahbenson/neuropythy
neuropythy/geometry/util.py
https://github.com/noahbenson/neuropythy/blob/b588889f6db36ddb9602ae4a72c1c0d3f41586b2/neuropythy/geometry/util.py#L23-L31
def vector_angle_cos(u, v): ''' vector_angle_cos(u, v) yields the cosine of the angle between the two vectors u and v. If u or v (or both) is a (d x n) matrix of n vectors, the result will be a length n vector of the cosines. ''' u = np.asarray(u) v = np.asarray(v) return (u * v).sum(0) ...
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vector_angle_cos(u, v) yields the cosine of the angle between the two vectors u and v. If u or v (or both) is a (d x n) matrix of n vectors, the result will be a length n vector of the cosines.
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python
train
bioasp/ingranalyze
src/query.py
https://github.com/bioasp/ingranalyze/blob/60bdd679b6044a4d142abbca5bbe3cd5e9fd7596/src/query.py#L198-L214
def whatsnew(instance,pred): ''' [whatsnew(instance,pred)] is a TermSet equal to [pred] where all predicates vlabel and elabel which have a corresponding obs_vlabel and obs_elabel in [instance] have been deleted. This function is meant to see which of the invariants are not a direct consequence of t...
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[whatsnew(instance,pred)] is a TermSet equal to [pred] where all predicates vlabel and elabel which have a corresponding obs_vlabel and obs_elabel in [instance] have been deleted. This function is meant to see which of the invariants are not a direct consequence of the observations.
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python
train
mnick/scikit-tensor
sktensor/sptensor.py
https://github.com/mnick/scikit-tensor/blob/fe517e9661a08164b8d30d2dddf7c96aeeabcf36/sktensor/sptensor.py#L179-L195
def _ttm_me_compute(self, V, edims, sdims, transp): """ Assume Y = T x_i V_i for i = 1...n can fit into memory """ shapeY = np.copy(self.shape) # Determine size of Y for n in np.union1d(edims, sdims): shapeY[n] = V[n].shape[1] if transp else V[n].shape[0] ...
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python
train
tensorflow/tensor2tensor
tensor2tensor/layers/common_layers.py
https://github.com/tensorflow/tensor2tensor/blob/272500b6efe353aeb638d2745ed56e519462ca31/tensor2tensor/layers/common_layers.py#L2189-L2214
def running_global_pool_1d(inputs, pooling_type="MAX"): """Same global pool, but only for the elements up to the current element. Useful for outputs where the state of future elements is not known. Takes no mask as all elements up to the current element are assumed to exist. Currently only supports maximum. Eq...
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Same global pool, but only for the elements up to the current element. Useful for outputs where the state of future elements is not known. Takes no mask as all elements up to the current element are assumed to exist. Currently only supports maximum. Equivalent to using a lower triangle bias. Args: inputs:...
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python
train
rochacbruno/python-pagseguro
pagseguro/__init__.py
https://github.com/rochacbruno/python-pagseguro/blob/18a9ca3301783cb323e838574b59f9ddffa9a593/pagseguro/__init__.py#L260-L277
def query_transactions(self, initial_date, final_date, page=None, max_results=None): """ query transaction by date range """ last_page = False results = [] while last_page is False: search_result = self._consume_query_tran...
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query transaction by date range
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python
train
pandas-dev/pandas
pandas/core/base.py
https://github.com/pandas-dev/pandas/blob/9feb3ad92cc0397a04b665803a49299ee7aa1037/pandas/core/base.py#L86-L95
def _reset_cache(self, key=None): """ Reset cached properties. If ``key`` is passed, only clears that key. """ if getattr(self, '_cache', None) is None: return if key is None: self._cache.clear() else: self._cache.pop(key, None)
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Reset cached properties. If ``key`` is passed, only clears that key.
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python
train
BD2KOnFHIR/fhirtordf
fhirtordf/loaders/fhirresourceloader.py
https://github.com/BD2KOnFHIR/fhirtordf/blob/f97b3df683fa4caacf5cf4f29699ab060bcc0fbf/fhirtordf/loaders/fhirresourceloader.py#L157-L185
def add_value_node(self, subj: Node, pred: URIRef, val: Union[JsonObj, str, List], valuetype: Optional[URIRef]= None) -> None: """ Expand val according to the range of pred and add it to the graph :param subj: graph subject :param pred: graph predicate :par...
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Expand val according to the range of pred and add it to the graph :param subj: graph subject :param pred: graph predicate :param val: JSON representation of target object :param valuetype: predicate type if it can't be directly determined
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python
train
kovidgoyal/html5-parser
src/html5_parser/__init__.py
https://github.com/kovidgoyal/html5-parser/blob/65ce451652cbab71ed86a9b53ac8c8906f2a2d67/src/html5_parser/__init__.py#L121-L207
def parse( html, transport_encoding=None, namespace_elements=False, treebuilder='lxml', fallback_encoding=None, keep_doctype=True, maybe_xhtml=False, return_root=True, line_number_attr=None, sanitize_names=True, stack_size=16 * 1024 ): ''' Parse the specified :attr:`h...
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Parse the specified :attr:`html` and return the parsed representation. :param html: The HTML to be parsed. Can be either bytes or a unicode string. :param transport_encoding: If specified, assume the passed in bytes are in this encoding. Ignored if :attr:`html` is unicode. :param namespace_elemen...
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python
train
JIC-CSB/jicimagelib
jicimagelib/io.py
https://github.com/JIC-CSB/jicimagelib/blob/fbd67accb2e6d55969c6d4ed7e8b4bb4ab65cd44/jicimagelib/io.py#L148-L160
def run_command(self, input_file, output_dir=None): """Return the command for running bfconvert as a list. :param input_file: path to microscopy image to be converted :param ouput_dir: directory to write output tiff files to :returns: list """ base_name = os.path...
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Return the command for running bfconvert as a list. :param input_file: path to microscopy image to be converted :param ouput_dir: directory to write output tiff files to :returns: list
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python
train
saltstack/salt
salt/renderers/pyobjects.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/renderers/pyobjects.py#L339-L365
def load_states(): ''' This loads our states into the salt __context__ ''' states = {} # the loader expects to find pillar & grain data __opts__['grains'] = salt.loader.grains(__opts__) __opts__['pillar'] = __pillar__ lazy_utils = salt.loader.utils(__opts__) lazy_funcs = salt.loader...
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This loads our states into the salt __context__
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python
train
monarch-initiative/dipper
dipper/sources/Decipher.py
https://github.com/monarch-initiative/dipper/blob/24cc80db355bbe15776edc5c7b41e0886959ba41/dipper/sources/Decipher.py#L101-L226
def _process_ddg2p_annotations(self, limit): """ The ddg2p annotations associate a gene symbol to an omim disease, along with some HPO ids and pubs. The gene symbols come from gencode, which in turn come from HGNC official gene symbols. Therefore, we use the HGNC source class to...
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The ddg2p annotations associate a gene symbol to an omim disease, along with some HPO ids and pubs. The gene symbols come from gencode, which in turn come from HGNC official gene symbols. Therefore, we use the HGNC source class to get the id/symbol mapping for use in our annotations her...
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python
train
cosven/feeluown-core
fuocore/xiami/api.py
https://github.com/cosven/feeluown-core/blob/62dc64638f62971b16be0a75c0b8c7ae2999869e/fuocore/xiami/api.py#L54-L72
def _sign_payload(self, payload): """使用 appkey 对 payload 进行签名,返回新的请求参数 """ app_key = self._app_key t = int(time.time() * 1000) requestStr = { 'header': self._req_header, 'model': payload } data = json.dumps({'requestStr': json.dumps(request...
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使用 appkey 对 payload 进行签名,返回新的请求参数
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python
train
gem/oq-engine
openquake/baselib/datastore.py
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/baselib/datastore.py#L285-L301
def extend(self, key, array, **attrs): """ Extend the dataset associated to the given key; create it if needed :param key: name of the dataset :param array: array to store :param attrs: a dictionary of attributes """ try: dset = self.hdf5[key] ...
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Extend the dataset associated to the given key; create it if needed :param key: name of the dataset :param array: array to store :param attrs: a dictionary of attributes
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python
train
softlayer/softlayer-python
SoftLayer/CLI/order/package_locations.py
https://github.com/softlayer/softlayer-python/blob/9f181be08cc3668353b05a6de0cb324f52cff6fa/SoftLayer/CLI/order/package_locations.py#L15-L32
def cli(env, package_keyname): """List Datacenters a package can be ordered in. Use the location Key Name to place orders """ manager = ordering.OrderingManager(env.client) table = formatting.Table(COLUMNS) locations = manager.package_locations(package_keyname) for region in locations: ...
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List Datacenters a package can be ordered in. Use the location Key Name to place orders
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python
train
m-weigand/sip_models
lib/sip_models/res/cc.py
https://github.com/m-weigand/sip_models/blob/917da5d956215d9df2bf65b24123ba020e3e17c0/lib/sip_models/res/cc.py#L306-L334
def dim_dc(self, pars): r""" :math:`\frac{\partial \hat{\rho''}(\omega)}{\partial c} = \rho_0 \frac{-m sin(\frac{c \pi}{2}) ln(\omega \tau)(\omega \tau)^c - m (\omega \tau)^c \frac{\pi}{2} cos(\frac{\pi}{2}}{1 + 2 (\omega \tau)^c cos(\frac{c \pi}{2}) + (\omega \tau)^{2 c}} + \rho...
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r""" :math:`\frac{\partial \hat{\rho''}(\omega)}{\partial c} = \rho_0 \frac{-m sin(\frac{c \pi}{2}) ln(\omega \tau)(\omega \tau)^c - m (\omega \tau)^c \frac{\pi}{2} cos(\frac{\pi}{2}}{1 + 2 (\omega \tau)^c cos(\frac{c \pi}{2}) + (\omega \tau)^{2 c}} + \rho_0 \frac{\left[-m (\omeg...
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python
train
HumanCellAtlas/dcp-cli
hca/upload/upload_area.py
https://github.com/HumanCellAtlas/dcp-cli/blob/cc70817bc4e50944c709eaae160de0bf7a19f0f3/hca/upload/upload_area.py#L159-L168
def checksum_status(self, filename): """ Retrieve checksum status and values for a file :param str filename: The name of the file within the Upload Area :return: a dict with checksum information :rtype: dict :raises UploadApiException: if information could not be obtaine...
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python
train
pkgw/pwkit
pwkit/msmt.py
https://github.com/pkgw/pwkit/blob/d40957a1c3d2ea34e7ceac2267ee9635135f2793/pwkit/msmt.py#L806-L818
def _lval_add_towards_polarity(x, polarity): """Compute the appropriate Lval "kind" for the limit of value `x` towards `polarity`. Either 'toinf' or 'pastzero' depending on the sign of `x` and the infinity direction of polarity. """ if x < 0: if polarity < 0: return Lval('toinf'...
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Compute the appropriate Lval "kind" for the limit of value `x` towards `polarity`. Either 'toinf' or 'pastzero' depending on the sign of `x` and the infinity direction of polarity.
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python
train
materialsproject/pymatgen
pymatgen/analysis/graphs.py
https://github.com/materialsproject/pymatgen/blob/4ca558cf72f8d5f8a1f21dfdfc0181a971c186da/pymatgen/analysis/graphs.py#L1796-L1814
def set_node_attributes(self): """ Replicates molecule site properties (specie, coords, etc.) in the MoleculeGraph. :return: """ species = {} coords = {} properties = {} for node in self.graph.nodes(): species[node] = self.molecule[no...
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Replicates molecule site properties (specie, coords, etc.) in the MoleculeGraph. :return:
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python
train
secdev/scapy
scapy/contrib/http2.py
https://github.com/secdev/scapy/blob/3ffe757c184017dd46464593a8f80f85abc1e79a/scapy/contrib/http2.py#L2312-L2326
def resize(self, ns): # type: (int) -> None """Resize the dynamic table. If the new size (ns) must be between 0 and the cap size. If the new size is lower than the current size of the dynamic table, entries are evicted. @param int ns: the new size of the dynamic table @ra...
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Resize the dynamic table. If the new size (ns) must be between 0 and the cap size. If the new size is lower than the current size of the dynamic table, entries are evicted. @param int ns: the new size of the dynamic table @raise AssertionError
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python
train
calston/rhumba
rhumba/http_client.py
https://github.com/calston/rhumba/blob/05e3cbf4e531cc51b4777912eb98a4f006893f5e/rhumba/http_client.py#L69-L75
def abort_request(self, request): """Called to abort request on timeout""" self.timedout = True try: request.cancel() except error.AlreadyCancelled: return
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Called to abort request on timeout
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python
train
EnergieID/smappy
smappy/smappy.py
https://github.com/EnergieID/smappy/blob/1ada3abc9a51c76205c072369258f6f4f4e8fd0f/smappy/smappy.py#L173-L213
def get_consumption(self, service_location_id, start, end, aggregation, raw=False): """ Request Elektricity consumption and Solar production for a given service location. Parameters ---------- service_location_id : int start : int | dt.datetime | pd.Timestamp ...
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Request Elektricity consumption and Solar production for a given service location. Parameters ---------- service_location_id : int start : int | dt.datetime | pd.Timestamp end : int | dt.datetime | pd.Timestamp start and end support epoch (in milliseconds), ...
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python
train
SecurityInnovation/PGPy
pgpy/pgp.py
https://github.com/SecurityInnovation/PGPy/blob/f1c3d68e32c334f5aa14c34580925e97f17f4fde/pgpy/pgp.py#L609-L636
def new(cls, pn, comment="", email=""): """ Create a new User ID or photo. :param pn: User ID name, or photo. If this is a ``bytearray``, it will be loaded as a photo. Otherwise, it will be used as the name field for a User ID. :type pn: ``bytearray``, ``str``, ``unic...
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Create a new User ID or photo. :param pn: User ID name, or photo. If this is a ``bytearray``, it will be loaded as a photo. Otherwise, it will be used as the name field for a User ID. :type pn: ``bytearray``, ``str``, ``unicode`` :param comment: The comment field for a User I...
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python
train
thiagopbueno/pyrddl
pyrddl/rddl.py
https://github.com/thiagopbueno/pyrddl/blob/3bcfa850b1a7532c7744358f3c6b9e0f8ab978c9/pyrddl/rddl.py#L130-L139
def action_fluent_variables(self) -> FluentParamsList: '''Returns the instantiated action fluents in canonical order. Returns: Sequence[Tuple[str, List[str]]]: A tuple of pairs of fluent name and a list of instantiated fluents represented as strings. ''' fluents ...
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Returns the instantiated action fluents in canonical order. Returns: Sequence[Tuple[str, List[str]]]: A tuple of pairs of fluent name and a list of instantiated fluents represented as strings.
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python
train
Esri/ArcREST
src/arcrest/manageags/_data.py
https://github.com/Esri/ArcREST/blob/ab240fde2b0200f61d4a5f6df033516e53f2f416/src/arcrest/manageags/_data.py#L293-L310
def validateDataStore(self, dataStoreName, machineName): """ Checks the status of ArcGIS Data Store and provides a health check response. Inputs: dataStoreName - name of the datastore machineName - name of the machine """ url = self._url + "/items/e...
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Checks the status of ArcGIS Data Store and provides a health check response. Inputs: dataStoreName - name of the datastore machineName - name of the machine
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python
train
biocore/burrito-fillings
bfillings/seqprep.py
https://github.com/biocore/burrito-fillings/blob/02ab71a46119b40793bd56a4ae00ca15f6dc3329/bfillings/seqprep.py#L185-L229
def _get_result_paths(self, data): """Captures SeqPrep output. """ result = {} # Always output: result['UnassembledReads1'] = ResultPath(Path= self._unassembled_reads1_out_file_name( ...
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Captures SeqPrep output.
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python
train
cjdrake/pyeda
pyeda/boolalg/bfarray.py
https://github.com/cjdrake/pyeda/blob/554ee53aa678f4b61bcd7e07ba2c74ddc749d665/pyeda/boolalg/bfarray.py#L899-L906
def _coord2offset(self, coord): """Convert a normalized coordinate to an item offset.""" size = self.size offset = 0 for dim, index in enumerate(coord): size //= self._normshape[dim] offset += size * index return offset
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Convert a normalized coordinate to an item offset.
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python
train
ellmetha/neojsonrpc
neojsonrpc/client.py
https://github.com/ellmetha/neojsonrpc/blob/e369b633a727482d5f9e310f0c3337ae5f7265db/neojsonrpc/client.py#L74-L83
def get_account_state(self, address, **kwargs): """ Returns the account state information associated with a specific address. :param address: a 34-bit length address (eg. AJBENSwajTzQtwyJFkiJSv7MAaaMc7DsRz) :type address: str :return: dictionary containing the account state information ...
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Returns the account state information associated with a specific address. :param address: a 34-bit length address (eg. AJBENSwajTzQtwyJFkiJSv7MAaaMc7DsRz) :type address: str :return: dictionary containing the account state information :rtype: dict
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python
test
bitesofcode/projexui
projexui/widgets/xcombobox.py
https://github.com/bitesofcode/projexui/blob/f18a73bec84df90b034ca69b9deea118dbedfc4d/projexui/widgets/xcombobox.py#L167-L176
def checkedItems( self ): """ Returns the checked items for this combobox. :return [<str>, ..] """ if not self.isCheckable(): return [] return [nativestring(self.itemText(i)) for i in self.checkedIndexes()]
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Returns the checked items for this combobox. :return [<str>, ..]
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python
train
skibblenybbles/django-commando
commando/management/base.py
https://github.com/skibblenybbles/django-commando/blob/dd1dd6969fc0dd8231fc115fee3eeb690809585b/commando/management/base.py#L286-L307
def handle(self, *arguments, **options): """ Parses arguments and options, runs validate_<action> for each action named by self.get_actions(), then runs handle_<action> for each action named by self.get_actions(). """ self.arguments = arguments self.optio...
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Parses arguments and options, runs validate_<action> for each action named by self.get_actions(), then runs handle_<action> for each action named by self.get_actions().
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python
train
soimort/you-get
src/you_get/util/log.py
https://github.com/soimort/you-get/blob/b746ac01c9f39de94cac2d56f665285b0523b974/src/you_get/util/log.py#L72-L74
def print_log(text, *colors): """Print a log message to standard error.""" sys.stderr.write(sprint("{}: {}".format(script_name, text), *colors) + "\n")
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Print a log message to standard error.
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python
test
kubernetes-client/python
kubernetes/client/apis/admissionregistration_v1beta1_api.py
https://github.com/kubernetes-client/python/blob/5e512ff564c244c50cab780d821542ed56aa965a/kubernetes/client/apis/admissionregistration_v1beta1_api.py#L1185-L1209
def patch_validating_webhook_configuration(self, name, body, **kwargs): """ partially update the specified ValidatingWebhookConfiguration This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True >>> thread = api.pat...
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partially update the specified ValidatingWebhookConfiguration This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True >>> thread = api.patch_validating_webhook_configuration(name, body, async_req=True) >>> result = thread....
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python
train
Netflix-Skunkworks/swag-client
swag_client/cli.py
https://github.com/Netflix-Skunkworks/swag-client/blob/e43816a85c4f48011cf497a4eae14f9df71fee0f/swag_client/cli.py#L146-L154
def list_service(ctx, name): """Retrieve accounts pertaining to named service.""" swag = create_swag_from_ctx(ctx) accounts = swag.get_service_enabled(name) _table = [[result['name'], result.get('id')] for result in accounts] click.echo( tabulate(_table, headers=["Account Name", "Account Nu...
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Retrieve accounts pertaining to named service.
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python
train
mlperf/training
rnn_translator/pytorch/seq2seq/data/tokenizer.py
https://github.com/mlperf/training/blob/1c6ae725a81d15437a2b2df05cac0673fde5c3a4/rnn_translator/pytorch/seq2seq/data/tokenizer.py#L44-L56
def pad_vocabulary(self, vocab, pad): """ Pads vocabulary to a multiple of 'pad' tokens. :param vocab: list with vocabulary :param pad: integer """ vocab_size = len(vocab) padded_vocab_size = (vocab_size + pad - 1) // pad * pad for i in range(0, padded_vo...
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Pads vocabulary to a multiple of 'pad' tokens. :param vocab: list with vocabulary :param pad: integer
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python
train
vaexio/vaex
packages/vaex-core/vaex/functions.py
https://github.com/vaexio/vaex/blob/a45b672f8287afca2ada8e36b74b604b9b28dd85/packages/vaex-core/vaex/functions.py#L770-L805
def str_get(x, i): """Extract a character from each sample at the specified position from a string column. Note that if the specified position is out of bound of the string sample, this method returns '', while pandas retunrs nan. :param int i: The index location, at which to extract the character. :re...
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Extract a character from each sample at the specified position from a string column. Note that if the specified position is out of bound of the string sample, this method returns '', while pandas retunrs nan. :param int i: The index location, at which to extract the character. :returns: an expression conta...
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python
test
abusque/qng
qng/generator.py
https://github.com/abusque/qng/blob/93d2efd637b2a6bba7d3872fb9ff2bb3fc5c979d/qng/generator.py#L111-L119
def _get_surnames(self): """Get the list of surnames. :return: A list of surname entries. """ names = self._read_name_file('surnames.json') names = self._compute_weights(names) return names
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Get the list of surnames. :return: A list of surname entries.
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python
train
tanghaibao/jcvi
jcvi/formats/psl.py
https://github.com/tanghaibao/jcvi/blob/d2e31a77b6ade7f41f3b321febc2b4744d1cdeca/jcvi/formats/psl.py#L105-L113
def _isProtein(self): """ check if blockSizes and scores are in the protein space or not """ last = self.blockCount - 1 return ((self.tEnd == self.tStarts[last] + 3 * self.blockSizes[last]) \ and self.strand == "+") or \ ((self.tStart == self.tSize...
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check if blockSizes and scores are in the protein space or not
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python
train
ulule/django-badgify
badgify/recipe.py
https://github.com/ulule/django-badgify/blob/1bf233ffeb6293ee659454de7b3794682128b6ca/badgify/recipe.py#L174-L180
def get_current_user_ids(self, db_read=None): """ Returns current user ids and the count. """ db_read = db_read or self.db_read return self.user_ids.using(db_read)
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Returns current user ids and the count.
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python
train
has2k1/plotnine
plotnine/facets/facet.py
https://github.com/has2k1/plotnine/blob/566e579af705367e584fb27a74e6c5199624ca89/plotnine/facets/facet.py#L507-L553
def draw_strip_text(self, text_lines, location, pid): """ Create a background patch and put a label on it """ ax = self.axs[pid] themeable = self.figure._themeable dim = self.strip_dimensions(text_lines, location, pid) if location == 'right': rotation...
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Create a background patch and put a label on it
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python
train
arne-cl/discoursegraphs
src/discoursegraphs/readwrite/mmax2.py
https://github.com/arne-cl/discoursegraphs/blob/842f0068a3190be2c75905754521b176b25a54fb/src/discoursegraphs/readwrite/mmax2.py#L225-L227
def get_token_nodes_from_sentence(self, sentence_root_node): """returns a list of token node IDs belonging to the given sentence""" return spanstring2tokens(self, self.node[sentence_root_node][self.ns+':span'])
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returns a list of token node IDs belonging to the given sentence
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python
train
CI-WATER/mapkit
mapkit/__init__.py
https://github.com/CI-WATER/mapkit/blob/ce5fbded6af7adabdf1eec85631c6811ef8ecc34/mapkit/__init__.py#L22-L48
def lookupSpatialReferenceID(wellKnownText): """ This function can be used to look up the EPSG spatial reference system using the web service available at: http://prj2epsg.org Args: wellKnownText (str): The Well Known Text definition of the spatial reference system. Returns: int: S...
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This function can be used to look up the EPSG spatial reference system using the web service available at: http://prj2epsg.org Args: wellKnownText (str): The Well Known Text definition of the spatial reference system. Returns: int: Spatial Reference ID
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python
train
gautammishra/lyft-rides-python-sdk
lyft_rides/client.py
https://github.com/gautammishra/lyft-rides-python-sdk/blob/b6d96a0fceaf7dc3425153c418a8e25c57803431/lyft_rides/client.py#L54-L77
def _api_call(self, method, target, args=None): """Create a Request object and execute the call to the API Server. Parameters method (str) HTTP request (e.g. 'POST'). target (str) The target URL with leading slash (e.g. '/v1/products'). ...
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Create a Request object and execute the call to the API Server. Parameters method (str) HTTP request (e.g. 'POST'). target (str) The target URL with leading slash (e.g. '/v1/products'). args (dict) Optional dictionary of argumen...
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python
train
cjdrake/pyeda
pyeda/boolalg/bdd.py
https://github.com/cjdrake/pyeda/blob/554ee53aa678f4b61bcd7e07ba2c74ddc749d665/pyeda/boolalg/bdd.py#L116-L131
def _expr2bddnode(expr): """Convert an expression into a BDD node.""" if expr.is_zero(): return BDDNODEZERO elif expr.is_one(): return BDDNODEONE else: top = expr.top # Register this variable _ = bddvar(top.names, top.indices) root = top.uniqid l...
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Convert an expression into a BDD node.
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python
train
hodgesds/elasticsearch_tornado
elasticsearch_tornado/client.py
https://github.com/hodgesds/elasticsearch_tornado/blob/5acc1385589c92ffe3587ad05b7921c2cd1a30da/elasticsearch_tornado/client.py#L1260-L1272
def abort_benchmark(self, name=None, params={}, body='', callback=None, **kwargs): """ Aborts a running benchmark. `<http://www.elasticsearch.org/guide/en/elasticsearch/reference/master/search-benchmark.html>`_ :arg name: A benchmark name """ url = self.mk_url(*['_bench'...
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Aborts a running benchmark. `<http://www.elasticsearch.org/guide/en/elasticsearch/reference/master/search-benchmark.html>`_ :arg name: A benchmark name
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python
train
datadotworld/data.world-py
datadotworld/client/api.py
https://github.com/datadotworld/data.world-py/blob/ffaeb115f358731ab0b805b0c43b7ff2e3cf0a77/datadotworld/client/api.py#L162-L206
def update_dataset(self, dataset_key, **kwargs): """Update an existing dataset :param description: Dataset description :type description: str, optional :param summary: Dataset summary markdown :type summary: str, optional :param tags: Dataset tags :type tags: lis...
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Update an existing dataset :param description: Dataset description :type description: str, optional :param summary: Dataset summary markdown :type summary: str, optional :param tags: Dataset tags :type tags: list, optional :param license: Dataset license ...
[ "Update", "an", "existing", "dataset" ]
python
train
echonest/pyechonest
pyechonest/song.py
https://github.com/echonest/pyechonest/blob/d8c7af6c1da699b50b2f4b1bd3c0febe72e7f1ee/pyechonest/song.py#L120-L143
def get_song_hotttnesss(self, cache=True): """Get our numerical description of how hottt a song currently is Args: Kwargs: cache (bool): A boolean indicating whether or not the cached value should be used (if available). Defaults to True. Returns: ...
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Get our numerical description of how hottt a song currently is Args: Kwargs: cache (bool): A boolean indicating whether or not the cached value should be used (if available). Defaults to True. Returns: A float representing hotttnesss. ...
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python
train
miso-belica/sumy
sumy/evaluation/content_based.py
https://github.com/miso-belica/sumy/blob/099ab4938e2c1b6a011297375586bac2953641b9/sumy/evaluation/content_based.py#L36-L57
def unit_overlap(evaluated_model, reference_model): """ Computes unit overlap of two text documents. Documents has to be represented as TF models of non-empty document. :returns float: 0 <= overlap <= 1, where 0 means no match and 1 means exactly the same. """ if not (isinstance...
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Computes unit overlap of two text documents. Documents has to be represented as TF models of non-empty document. :returns float: 0 <= overlap <= 1, where 0 means no match and 1 means exactly the same.
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python
train
willkg/socorro-siggen
siggen/cmd_fetch_data.py
https://github.com/willkg/socorro-siggen/blob/db7e3233e665a458a961c48da22e93a69b1d08d6/siggen/cmd_fetch_data.py#L20-L39
def _fill_text(self, text, width, indent): """Wraps text like HelpFormatter, but doesn't squash lines This makes it easier to do lists and paragraphs. """ parts = text.split('\n\n') for i, part in enumerate(parts): # Check to see if it's a bulleted list--if so, then...
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Wraps text like HelpFormatter, but doesn't squash lines This makes it easier to do lists and paragraphs.
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python
train
sloria/environs
environs.py
https://github.com/sloria/environs/blob/cf0b5e865b0ce96ce77d459124a1dba84c9deda7/environs.py#L83-L94
def _dict2schema(dct): """Generate a `marshmallow.Schema` class given a dictionary of `Fields <marshmallow.fields.Field>`. """ attrs = dct.copy() if MARSHMALLOW_VERSION_INFO[0] < 3: class Meta(object): strict = True attrs["Meta"] = Meta return type(str(""), (ma.Sche...
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Generate a `marshmallow.Schema` class given a dictionary of `Fields <marshmallow.fields.Field>`.
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python
train
Rikanishu/static-bundle
static_bundle/bundles.py
https://github.com/Rikanishu/static-bundle/blob/2f6458cb9d9d9049b4fd829f7d6951a45d547c68/static_bundle/bundles.py#L94-L105
def add_prepare_handler(self, prepare_handlers): """ Add prepare handler to bundle :type: prepare_handler: static_bundle.handlers.AbstractPrepareHandler """ if not isinstance(prepare_handlers, static_bundle.BUNDLE_ITERABLE_TYPES): prepare_handlers = [prepare_handlers...
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Add prepare handler to bundle :type: prepare_handler: static_bundle.handlers.AbstractPrepareHandler
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python
valid
SmileyChris/easy-thumbnails
easy_thumbnails/files.py
https://github.com/SmileyChris/easy-thumbnails/blob/b08ab44883bf7b221a98dadb9b589cb95d35b0bf/easy_thumbnails/files.py#L749-L769
def save(self, name, content, *args, **kwargs): """ Save the image. The image will be resized down using a ``ThumbnailField`` if ``resize_source`` (a dictionary of thumbnail options) is provided by the field. """ options = getattr(self.field, 'resize_source', Non...
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Save the image. The image will be resized down using a ``ThumbnailField`` if ``resize_source`` (a dictionary of thumbnail options) is provided by the field.
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python
train
tornadoweb/tornado
tornado/iostream.py
https://github.com/tornadoweb/tornado/blob/b8b481770bcdb333a69afde5cce7eaa449128326/tornado/iostream.py#L159-L179
def append(self, data: Union[bytes, bytearray, memoryview]) -> None: """ Append the given piece of data (should be a buffer-compatible object). """ size = len(data) if size > self._large_buf_threshold: if not isinstance(data, memoryview): data = memory...
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Append the given piece of data (should be a buffer-compatible object).
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python
train
trolldbois/ctypeslib
ctypeslib/codegen/cursorhandler.py
https://github.com/trolldbois/ctypeslib/blob/2aeb1942a5a32a5cc798c287cd0d9e684a0181a8/ctypeslib/codegen/cursorhandler.py#L362-L405
def _get_var_decl_init_value_single(self, _ctype, child): """ Handling of a single child for initialization value. Accepted types are expressions and declarations """ init_value = None # FIXME: always return (child.kind, child.value) log.debug( '_get_v...
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Handling of a single child for initialization value. Accepted types are expressions and declarations
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python
train
etcher-be/emiz
emiz/weather/custom_metar/custom_metar.py
https://github.com/etcher-be/emiz/blob/1c3e32711921d7e600e85558ffe5d337956372de/emiz/weather/custom_metar/custom_metar.py#L118-L143
def _handlePressure(self, d): """ Parse an altimeter-pressure group. The following attributes are set: press [int] """ press = d['press'] if press != '////': press = float(press.replace('O', '0')) if d['unit']: if d[...
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Parse an altimeter-pressure group. The following attributes are set: press [int]
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python
train
MacHu-GWU/angora-project
angora/filesystem/filesystem.py
https://github.com/MacHu-GWU/angora-project/blob/689a60da51cd88680ddbe26e28dbe81e6b01d275/angora/filesystem/filesystem.py#L942-L958
def sort_by(self, attr_name, reverse=False): """Sort files by one of it's attributes. **中文文档** 对容器内的WinFile根据其某一个属性升序或者降序排序。 """ try: d = dict() for abspath, winfile in self.files.items(): d[abspath] = getattr(winfile, att...
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Sort files by one of it's attributes. **中文文档** 对容器内的WinFile根据其某一个属性升序或者降序排序。
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python
train
edeposit/edeposit.amqp.ftp
src/edeposit/amqp/ftp/request_parser.py
https://github.com/edeposit/edeposit.amqp.ftp/blob/fcdcbffb6e5d194e1bb4f85f0b8eaa9dbb08aa71/src/edeposit/amqp/ftp/request_parser.py#L114-L124
def _safe_read_meta_file(fn, error_protocol): """ Try to read MetadataFile. If the exception is raised, log the errors to the `error_protocol` and return None. """ try: return MetadataFile(fn) except Exception, e: error_protocol.append( "Can't read MetadataFile '%s':\...
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Try to read MetadataFile. If the exception is raised, log the errors to the `error_protocol` and return None.
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python
train