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howie6879/ruia
ruia/response.py
https://github.com/howie6879/ruia/blob/2dc5262fc9c3e902a8faa7d5fa2f046f9d9ee1fa/ruia/response.py#L123-L130
async def json(self, *, encoding: str = None, loads: JSONDecoder = DEFAULT_JSON_DECODER, content_type: Optional[str] = 'application/json') -> Any: """Read and decodes JSON response.""" return await self._aws_json( en...
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Read and decodes JSON response.
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python
test
decryptus/sonicprobe
sonicprobe/libs/xys.py
https://github.com/decryptus/sonicprobe/blob/72f73f3a40d2982d79ad68686e36aa31d94b76f8/sonicprobe/libs/xys.py#L278-L282
def _split_params(tag_prefix, tag_suffix): "Split comma-separated tag_suffix[:-1] and map with _maybe_int" if tag_suffix[-1:] != ')': raise ValueError, "unbalanced parenthesis in type %s%s" % (tag_prefix, tag_suffix) return map(_maybe_int, tag_suffix[:-1].split(','))
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Split comma-separated tag_suffix[:-1] and map with _maybe_int
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python
train
scivision/gridaurora
gridaurora/calcemissions.py
https://github.com/scivision/gridaurora/blob/c3957b93c2201afff62bd104e0acead52c0d9e90/gridaurora/calcemissions.py#L169-L187
def catvl(z, ver, vnew, lamb, lambnew, br): """ trapz integrates over altitude axis, axis = -2 concatenate over reaction dimension, axis = -1 br: column integrated brightness lamb: wavelength [nm] ver: volume emission rate [photons / cm^-3 s^-3 ...] """ if ver is not None: br =...
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trapz integrates over altitude axis, axis = -2 concatenate over reaction dimension, axis = -1 br: column integrated brightness lamb: wavelength [nm] ver: volume emission rate [photons / cm^-3 s^-3 ...]
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python
train
juanifioren/django-oidc-provider
oidc_provider/lib/utils/token.py
https://github.com/juanifioren/django-oidc-provider/blob/f0daed07b2ac7608565b80d4c80ccf04d8c416a8/oidc_provider/lib/utils/token.py#L105-L123
def create_token(user, client, scope, id_token_dic=None): """ Create and populate a Token object. Return a Token object. """ token = Token() token.user = user token.client = client token.access_token = uuid.uuid4().hex if id_token_dic is not None: token.id_token = id_token_d...
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Create and populate a Token object. Return a Token object.
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python
train
molmod/molmod
molmod/examples/003_internal_coordinates/c_ff_hessian.py
https://github.com/molmod/molmod/blob/a7b5b4364ed514ad4c465856c05b5eda1cb561e0/molmod/examples/003_internal_coordinates/c_ff_hessian.py#L106-L144
def setup_hydrocarbon_ff(graph): """Create a simple ForceField object for hydrocarbons based on the graph.""" # A) Define parameters. # the bond parameters: bond_params = { (6, 1): 310*kcalmol/angstrom**2, (6, 6): 220*kcalmol/angstrom**2, } # for every (a, b), also add (b, a) ...
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Create a simple ForceField object for hydrocarbons based on the graph.
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python
train
PmagPy/PmagPy
dialogs/drop_down_menus2.py
https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/dialogs/drop_down_menus2.py#L311-L350
def on_select_menuitem(self, event, grid, row, col, selection): """ sets value of selected cell to value selected from menu """ if self.grid.changes: # if user selects a menuitem, that is an edit self.grid.changes.add(row) else: self.grid.changes = {row} ...
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sets value of selected cell to value selected from menu
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python
train
JdeRobot/base
src/drivers/MAVLinkServer/MAVProxy/pymavlink/tools/mavgpslock.py
https://github.com/JdeRobot/base/blob/303b18992785b2fe802212f2d758a60873007f1f/src/drivers/MAVLinkServer/MAVProxy/pymavlink/tools/mavgpslock.py#L19-L58
def lock_time(logfile): '''work out gps lock times for a log file''' print("Processing log %s" % filename) mlog = mavutil.mavlink_connection(filename) locked = False start_time = 0.0 total_time = 0.0 t = None m = mlog.recv_match(type=['GPS_RAW_INT','GPS_RAW'], condition=args.condition) ...
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work out gps lock times for a log file
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python
train
prompt-toolkit/pymux
pymux/arrangement.py
https://github.com/prompt-toolkit/pymux/blob/3f66e62b9de4b2251c7f9afad6c516dc5a30ec67/pymux/arrangement.py#L485-L541
def change_size_for_pane(self, pane, up=0, right=0, down=0, left=0): """ Increase the size of the current pane in any of the four directions. Positive values indicate an increase, negative values a decrease. """ assert isinstance(pane, Pane) def find_split_and_child(spli...
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Increase the size of the current pane in any of the four directions. Positive values indicate an increase, negative values a decrease.
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python
train
ANTsX/ANTsPy
ants/core/ants_image_io.py
https://github.com/ANTsX/ANTsPy/blob/638020af2cdfc5ff4bdb9809ffe67aa505727a3b/ants/core/ants_image_io.py#L208-L243
def matrix_to_images(data_matrix, mask): """ Unmasks rows of a matrix and writes as images ANTsR function: `matrixToImages` Arguments --------- data_matrix : numpy.ndarray each row corresponds to an image array should have number of columns equal to non-zero voxels in the mask ...
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Unmasks rows of a matrix and writes as images ANTsR function: `matrixToImages` Arguments --------- data_matrix : numpy.ndarray each row corresponds to an image array should have number of columns equal to non-zero voxels in the mask mask : ANTsImage image containing a bina...
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python
train
tknapen/FIRDeconvolution
src/FIRDeconvolution.py
https://github.com/tknapen/FIRDeconvolution/blob/6263496a356c449062fe4c216fef56541f6dc151/src/FIRDeconvolution.py#L300-L310
def calculate_rsq(self): """calculate_rsq calculates coefficient of determination, or r-squared, defined here as 1.0 - SS_res / SS_tot. rsq is only calculated for those timepoints in the data for which the design matrix is non-zero. """ assert hasattr(self, 'betas'), 'no betas found, please run ...
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calculate_rsq calculates coefficient of determination, or r-squared, defined here as 1.0 - SS_res / SS_tot. rsq is only calculated for those timepoints in the data for which the design matrix is non-zero.
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python
train
ralphje/imagemounter
imagemounter/filesystems.py
https://github.com/ralphje/imagemounter/blob/86213781c366cad65096447d91f522f0a3fb4b93/imagemounter/filesystems.py#L460-L494
def mount(self, volume): """Performs mount actions on a LVM. Scans for active volume groups from the loopback device, activates it and fills :attr:`volumes` with the logical volumes. :raises NoLoopbackAvailableError: when no loopback was available :raises IncorrectFilesystemError: when ...
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Performs mount actions on a LVM. Scans for active volume groups from the loopback device, activates it and fills :attr:`volumes` with the logical volumes. :raises NoLoopbackAvailableError: when no loopback was available :raises IncorrectFilesystemError: when the volume is not a volume group
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python
train
spyder-ide/spyder
spyder/plugins/explorer/widgets.py
https://github.com/spyder-ide/spyder/blob/f76836ce1b924bcc4efd3f74f2960d26a4e528e0/spyder/plugins/explorer/widgets.py#L551-L559
def open(self, fnames=None): """Open files with the appropriate application""" if fnames is None: fnames = self.get_selected_filenames() for fname in fnames: if osp.isfile(fname) and encoding.is_text_file(fname): self.parent_widget.sig_open_file.emit...
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Open files with the appropriate application
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python
train
base4sistemas/pyescpos
escpos/conn/serial.py
https://github.com/base4sistemas/pyescpos/blob/621bd00f1499aff700f37d8d36d04e0d761708f1/escpos/conn/serial.py#L444-L449
def write(self, data): """Write data to serial port.""" for chunk in chunks(data, 512): self.wait_to_write() self.comport.write(chunk) self.comport.flush()
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Write data to serial port.
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python
train
arne-cl/discoursegraphs
src/discoursegraphs/corpora.py
https://github.com/arne-cl/discoursegraphs/blob/842f0068a3190be2c75905754521b176b25a54fb/src/discoursegraphs/corpora.py#L89-L107
def get_document(self, doc_id): """ given a document ID, returns a merged document graph containng all available annotation layers. """ layer_graphs = [] for layer_name in self.layers: layer_files, read_function = self.layers[layer_name] for layer_...
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given a document ID, returns a merged document graph containng all available annotation layers.
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python
train
balloob/pychromecast
pychromecast/controllers/youtube.py
https://github.com/balloob/pychromecast/blob/831b09c4fed185a7bffe0ea330b7849d5f4e36b6/pychromecast/controllers/youtube.py#L29-L35
def start_session_if_none(self): """ Starts a session it is not yet initialized. """ if not (self._screen_id and self._session): self.update_screen_id() self._session = YouTubeSession(screen_id=self._screen_id)
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Starts a session it is not yet initialized.
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python
train
materialsproject/pymatgen
pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py
https://github.com/materialsproject/pymatgen/blob/4ca558cf72f8d5f8a1f21dfdfc0181a971c186da/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py#L662-L684
def indices_separate(self, points, dist_tolerance): """ Returns three lists containing the indices of the points lying on one side of the plane, on the plane and on the other side of the plane. The dist_tolerance parameter controls the tolerance to which a point is considered to lie on t...
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Returns three lists containing the indices of the points lying on one side of the plane, on the plane and on the other side of the plane. The dist_tolerance parameter controls the tolerance to which a point is considered to lie on the plane or not (distance to the plane) :param points: list of p...
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python
train
rgs1/zk_shell
zk_shell/shell.py
https://github.com/rgs1/zk_shell/blob/bbf34fdfcf1f81100e2a5816fad8af6afc782a54/zk_shell/shell.py#L1275-L1291
def do_zero(self, params): """ \x1b[1mNAME\x1b[0m zero - Set the znode's to None (no bytes) \x1b[1mSYNOPSIS\x1b[0m zero <path> [version] \x1b[1mOPTIONS\x1b[0m * version: only update if version matches (default: -1) \x1b[1mEXAMPLES\x1b[0m > zero /foo > zero /foo 3 ...
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python
train
BerkeleyAutomation/perception
perception/webcam_sensor.py
https://github.com/BerkeleyAutomation/perception/blob/03d9b37dd6b66896cdfe173905c9413c8c3c5df6/perception/webcam_sensor.py#L104-L132
def frames(self, most_recent=False): """Retrieve a new frame from the PhoXi and convert it to a ColorImage, a DepthImage, and an IrImage. Parameters ---------- most_recent: bool If true, the OpenCV buffer is emptied for the webcam before reading the most recent frame...
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Retrieve a new frame from the PhoXi and convert it to a ColorImage, a DepthImage, and an IrImage. Parameters ---------- most_recent: bool If true, the OpenCV buffer is emptied for the webcam before reading the most recent frame. Returns ------- :obj:...
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python
train
gem/oq-engine
openquake/calculators/base.py
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/calculators/base.py#L321-L331
def check_time_event(oqparam, occupancy_periods): """ Check the `time_event` parameter in the datastore, by comparing with the periods found in the exposure. """ time_event = oqparam.time_event if time_event and time_event not in occupancy_periods: raise ValueError( 'time_eve...
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Check the `time_event` parameter in the datastore, by comparing with the periods found in the exposure.
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python
train
mkouhei/tonicdnscli
src/tonicdnscli/processing.py
https://github.com/mkouhei/tonicdnscli/blob/df2d6fb2104ae4d49fa89d1bba2f3ccd2fed388c/src/tonicdnscli/processing.py#L124-L137
def delete_zone(server, token, domain): """Delete specific zone. Argument: server: TonicDNS API server token: TonicDNS API authentication token domain: Specify domain name x-authentication-token: token """ method = 'DELETE' uri = 'https://' + server + '/zone/' + domai...
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Delete specific zone. Argument: server: TonicDNS API server token: TonicDNS API authentication token domain: Specify domain name x-authentication-token: token
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python
train
pandas-dev/pandas
pandas/core/internals/construction.py
https://github.com/pandas-dev/pandas/blob/9feb3ad92cc0397a04b665803a49299ee7aa1037/pandas/core/internals/construction.py#L62-L98
def masked_rec_array_to_mgr(data, index, columns, dtype, copy): """ Extract from a masked rec array and create the manager. """ # essentially process a record array then fill it fill_value = data.fill_value fdata = ma.getdata(data) if index is None: index = get_names_from_index(fdat...
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Extract from a masked rec array and create the manager.
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python
train
markovmodel/PyEMMA
pyemma/datasets/potentials.py
https://github.com/markovmodel/PyEMMA/blob/5c3124398217de05ba5ce9c8fb01519222481ab8/pyemma/datasets/potentials.py#L85-L93
def folding_model_gradient(rvec, rcut): r"""computes the potential's gradient at point rvec""" rnorm = np.linalg.norm(rvec) if rnorm == 0.0: return np.zeros(rvec.shape) r = rnorm - rcut if r < 0.0: return -5.0 * r * rvec / rnorm return (1.5 * r - 2.0) * rvec / rnorm
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r"""computes the potential's gradient at point rvec
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python
train
vinci1it2000/schedula
schedula/utils/io.py
https://github.com/vinci1it2000/schedula/blob/addb9fd685be81544b796c51383ac00a31543ce9/schedula/utils/io.py#L126-L164
def load_default_values(dsp, path): """ Load Dispatcher default values in Python pickle format. Pickles are a serialized byte stream of a Python object. This format will preserve Python objects used as nodes or edges. :param dsp: A dispatcher that identifies the model adopted. :type ds...
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Load Dispatcher default values in Python pickle format. Pickles are a serialized byte stream of a Python object. This format will preserve Python objects used as nodes or edges. :param dsp: A dispatcher that identifies the model adopted. :type dsp: schedula.Dispatcher :param path: ...
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python
train
mnooner256/pyqrcode
pyqrcode/builder.py
https://github.com/mnooner256/pyqrcode/blob/674a77b5eaf850d063f518bd90c243ee34ad6b5d/pyqrcode/builder.py#L233-L274
def encode_kanji(self): """This method encodes the QR code's data if its mode is kanji. It returns the data encoded as a binary string. """ def two_bytes(data): """Output two byte character code as a single integer.""" def next_byte(b): """Make sur...
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This method encodes the QR code's data if its mode is kanji. It returns the data encoded as a binary string.
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python
train
larsks/thecache
thecache/cache.py
https://github.com/larsks/thecache/blob/e535f91031a7f92f19b5ff6fe2a1a03c7680e9e0/thecache/cache.py#L201-L206
def load_iter(self, key, chunksize=None, noexpire=None): '''Lookup an item in the cache and return an iterator that reads chunksize bytes of data at a time. The underlying file will be closed when all data has been read''' return chunk_iterator(self.load_fd(key, noexpire=noexpire), ...
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Lookup an item in the cache and return an iterator that reads chunksize bytes of data at a time. The underlying file will be closed when all data has been read
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python
train
hardbyte/python-can
can/interfaces/ixxat/canlib.py
https://github.com/hardbyte/python-can/blob/cdc5254d96072df7739263623f3e920628a7d214/can/interfaces/ixxat/canlib.py#L99-L131
def __check_status(result, function, arguments): """ Check the result of a vcinpl function call and raise appropriate exception in case of an error. Used as errcheck function when mapping C functions with ctypes. :param result: Function call numeric result :param callable fun...
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Check the result of a vcinpl function call and raise appropriate exception in case of an error. Used as errcheck function when mapping C functions with ctypes. :param result: Function call numeric result :param callable function: Called function :param arguments: ...
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python
train
rabitt/pysox
sox/transform.py
https://github.com/rabitt/pysox/blob/eae89bde74567136ec3f723c3e6b369916d9b837/sox/transform.py#L1662-L1699
def loudness(self, gain_db=-10.0, reference_level=65.0): '''Loudness control. Similar to the gain effect, but provides equalisation for the human auditory system. The gain is adjusted by gain_db and the signal is equalised according to ISO 226 w.r.t. reference_level. Parameters...
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Loudness control. Similar to the gain effect, but provides equalisation for the human auditory system. The gain is adjusted by gain_db and the signal is equalised according to ISO 226 w.r.t. reference_level. Parameters ---------- gain_db : float, default=-10.0 ...
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python
valid
hassa/BeatCop
beatcop.py
https://github.com/hassa/BeatCop/blob/bf7721e17a7828728b15c5833f047d858111197c/beatcop.py#L140-L170
def run(self): """Run process if nobody else is, otherwise wait until we're needed. Never returns.""" log.info("Waiting for lock, currently held by %s", self.lock.who()) if self.lock.acquire(): log.info("Lock '%s' acquired", self.lockname) # We got the lock, so we make s...
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Run process if nobody else is, otherwise wait until we're needed. Never returns.
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python
train
MaxStrange/AudioSegment
algorithms/asa.py
https://github.com/MaxStrange/AudioSegment/blob/1daefb8de626ddff3ff7016697c3ad31d262ecd6/algorithms/asa.py#L263-L283
def _lookup_offset_by_onset_idx(onset_idx, onsets, offsets): """ Takes an onset index (freq, sample) and returns the offset index (freq, sample) such that frequency index is the same, and sample index is the minimum of all offsets ocurring after the given onset. If there are no offsets after the given ...
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Takes an onset index (freq, sample) and returns the offset index (freq, sample) such that frequency index is the same, and sample index is the minimum of all offsets ocurring after the given onset. If there are no offsets after the given onset in that frequency channel, the final sample in that channel is r...
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python
test
DeepHorizons/iarm
iarm/arm_instructions/_meta.py
https://github.com/DeepHorizons/iarm/blob/b913c9fd577b793a6bbced78b78a5d8d7cd88de4/iarm/arm_instructions/_meta.py#L241-L257
def get_parameters(self, regex_exp, parameters): """ Given a regex expression and the string with the paramers, either return a regex match object or raise an exception if the regex did not find a match :param regex_exp: :param parameters: :return: """ ...
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Given a regex expression and the string with the paramers, either return a regex match object or raise an exception if the regex did not find a match :param regex_exp: :param parameters: :return:
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python
train
Iotic-Labs/py-IoticAgent
src/IoticAgent/IOT/Client.py
https://github.com/Iotic-Labs/py-IoticAgent/blob/893e8582ad1dacfe32dfc0ee89452bbd6f57d28d/src/IoticAgent/IOT/Client.py#L453-L483
def register_callback_deleted(self, func, serialised=True): """ Register a callback for resource deletion. This will be called when any resource is deleted within your agent. If `serialised` is not set, the callbacks might arrive in a different order to they were requested. The...
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Register a callback for resource deletion. This will be called when any resource is deleted within your agent. If `serialised` is not set, the callbacks might arrive in a different order to they were requested. The payload passed to your callback is an OrderedDict with the following keys ...
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python
train
sdispater/pendulum
pendulum/datetime.py
https://github.com/sdispater/pendulum/blob/94d28b0d3cb524ae02361bd1ed7ea03e2e655e4e/pendulum/datetime.py#L512-L530
def farthest(self, dt1, dt2, *dts): from functools import reduce """ Get the farthest date from the instance. :type dt1: datetime.datetime :type dt2: datetime.datetime :type dts: list[datetime.datetime,] :rtype: DateTime """ dt1 = pendulum.insta...
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Get the farthest date from the instance. :type dt1: datetime.datetime :type dt2: datetime.datetime :type dts: list[datetime.datetime,] :rtype: DateTime
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python
train
PyCQA/pylint
pylint/pyreverse/diadefslib.py
https://github.com/PyCQA/pylint/blob/2bf5c61a3ff6ae90613b81679de42c0f19aea600/pylint/pyreverse/diadefslib.py#L171-L175
def visit_importfrom(self, node): """visit astroid.ImportFrom and catch modules for package diagram """ if self.pkgdiagram: self.pkgdiagram.add_from_depend(node, node.modname)
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visit astroid.ImportFrom and catch modules for package diagram
[ "visit", "astroid", ".", "ImportFrom", "and", "catch", "modules", "for", "package", "diagram" ]
python
test
raiden-network/raiden
raiden/network/transport/matrix/utils.py
https://github.com/raiden-network/raiden/blob/407ba15c72074e9de88771d6b9661ff4dc36bef5/raiden/network/transport/matrix/utils.py#L196-L230
def _presence_listener(self, event: Dict[str, Any]): """ Update cached user presence state from Matrix presence events. Due to the possibility of nodes using accounts on multiple homeservers a composite address state is synthesised from the cached individual user presence states. ...
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Update cached user presence state from Matrix presence events. Due to the possibility of nodes using accounts on multiple homeservers a composite address state is synthesised from the cached individual user presence states.
[ "Update", "cached", "user", "presence", "state", "from", "Matrix", "presence", "events", "." ]
python
train
python-diamond/Diamond
src/collectors/puppetagent/puppetagent.py
https://github.com/python-diamond/Diamond/blob/0f3eb04327d6d3ed5e53a9967d6c9d2c09714a47/src/collectors/puppetagent/puppetagent.py#L30-L39
def get_default_config(self): """ Returns the default collector settings """ config = super(PuppetAgentCollector, self).get_default_config() config.update({ 'yaml_path': '/var/lib/puppet/state/last_run_summary.yaml', 'path': 'puppetagent', }) ...
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Returns the default collector settings
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python
train
iwanbk/nyamuk
nyamuk/nyamuk.py
https://github.com/iwanbk/nyamuk/blob/ac4c6028de288a4c8e0b332ae16eae889deb643d/nyamuk/nyamuk.py#L204-L210
def subscribe_multi(self, topics): """Subscribe to some topics.""" if self.sock == NC.INVALID_SOCKET: return NC.ERR_NO_CONN self.logger.info("SUBSCRIBE: %s", ', '.join([t for (t,q) in topics])) return self.send_subscribe(False, [(utf8encode(topic), qos) for (topic, q...
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Subscribe to some topics.
[ "Subscribe", "to", "some", "topics", "." ]
python
train
grangier/python-goose
goose/extractors/content.py
https://github.com/grangier/python-goose/blob/09023ec9f5ef26a628a2365616c0a7c864f0ecea/goose/extractors/content.py#L266-L276
def update_node_count(self, node, add_to_count): """\ stores how many decent nodes are under a parent node """ current_score = 0 count_string = self.parser.getAttribute(node, 'gravityNodes') if count_string: current_score = int(count_string) new_score...
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\ stores how many decent nodes are under a parent node
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python
train
tcalmant/ipopo
pelix/ipopo/instance.py
https://github.com/tcalmant/ipopo/blob/2f9ae0c44cd9c34ef1a9d50837b3254e75678eb1/pelix/ipopo/instance.py#L872-L892
def __set_binding(self, dependency, service, reference): # type: (Any, Any, ServiceReference) -> None """ Injects a service in the component :param dependency: The dependency handler :param service: The injected service :param reference: The reference of the injected ser...
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Injects a service in the component :param dependency: The dependency handler :param service: The injected service :param reference: The reference of the injected service
[ "Injects", "a", "service", "in", "the", "component" ]
python
train
glasslion/redlock
redlock/lock.py
https://github.com/glasslion/redlock/blob/7f873cc362eefa7f7adee8d4913e64f87c1fd1c9/redlock/lock.py#L62-L72
def create_lock(self, resource, **kwargs): """ Create a new RedLock object and reuse stored Redis clients. All the kwargs it received would be passed to the RedLock's __init__ function. """ lock = RedLock(resource=resource, created_by_factory=True, **kwargs) lock....
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Create a new RedLock object and reuse stored Redis clients. All the kwargs it received would be passed to the RedLock's __init__ function.
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python
train
glormph/msstitch
src/app/drivers/prottable/merge.py
https://github.com/glormph/msstitch/blob/ded7e5cbd813d7797dc9d42805778266e59ff042/src/app/drivers/prottable/merge.py#L35-L44
def set_feature_generator(self): """Generates proteins with quant from the lookup table""" self.features = preparation.build_proteintable(self.lookup, self.headerfields, self.mergecutoff, ...
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Generates proteins with quant from the lookup table
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python
train
mdeous/fatbotslim
fatbotslim/irc/__init__.py
https://github.com/mdeous/fatbotslim/blob/341595d24454a79caee23750eac271f9d0626c88/fatbotslim/irc/__init__.py#L22-L39
def u(s, errors='ignore'): """ Automatically detects given string's encoding and returns its unicode form. Decoding errors are handled according to the `errors` argument, see `unicode()` documentation for more details. :param s: string to decode. :type s: str :param errors: decoding error h...
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Automatically detects given string's encoding and returns its unicode form. Decoding errors are handled according to the `errors` argument, see `unicode()` documentation for more details. :param s: string to decode. :type s: str :param errors: decoding error handling behaviour. :type errors: st...
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python
train
thespacedoctor/sherlock
sherlock/imports/ned_d.py
https://github.com/thespacedoctor/sherlock/blob/2c80fb6fa31b04e7820e6928e3d437a21e692dd3/sherlock/imports/ned_d.py#L445-L553
def _query_ned_and_add_results_to_database( self, batchCount): """ query ned and add results to database **Key Arguments:** - ``batchCount`` - the index number of the batch sent to NED .. todo :: - update key arguments values and definitions wit...
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query ned and add results to database **Key Arguments:** - ``batchCount`` - the index number of the batch sent to NED .. todo :: - update key arguments values and definitions with defaults - update return values and definitions - update usage examples a...
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python
train
VIVelev/PyDojoML
dojo/cluster/kmeans.py
https://github.com/VIVelev/PyDojoML/blob/773fdce6866aa6decd306a5a85f94129fed816eb/dojo/cluster/kmeans.py#L77-L102
def fit(self, X): """The K-Means itself """ self._X = super().cluster(X) candidates = [] for _ in range(self.n_runs): self._init_random_centroids() while True: prev_clusters = self.clusters self._assign_clusters() ...
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The K-Means itself
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python
train
fastai/fastai
docs_src/nbval/cover.py
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/docs_src/nbval/cover.py#L76-L95
def teardown_coverage(config, kernel, output_loc=None): """Finish coverage reporting in kernel. The coverage should previously have been started with setup_coverage. """ language = kernel.language if language.startswith('python'): # Teardown code does not require any input, simply execu...
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Finish coverage reporting in kernel. The coverage should previously have been started with setup_coverage.
[ "Finish", "coverage", "reporting", "in", "kernel", "." ]
python
train
twilio/twilio-python
twilio/rest/taskrouter/v1/workspace/activity.py
https://github.com/twilio/twilio-python/blob/c867895f55dcc29f522e6e8b8868d0d18483132f/twilio/rest/taskrouter/v1/workspace/activity.py#L208-L217
def get_instance(self, payload): """ Build an instance of ActivityInstance :param dict payload: Payload response from the API :returns: twilio.rest.taskrouter.v1.workspace.activity.ActivityInstance :rtype: twilio.rest.taskrouter.v1.workspace.activity.ActivityInstance ""...
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Build an instance of ActivityInstance :param dict payload: Payload response from the API :returns: twilio.rest.taskrouter.v1.workspace.activity.ActivityInstance :rtype: twilio.rest.taskrouter.v1.workspace.activity.ActivityInstance
[ "Build", "an", "instance", "of", "ActivityInstance" ]
python
train
secdev/scapy
scapy/contrib/http2.py
https://github.com/secdev/scapy/blob/3ffe757c184017dd46464593a8f80f85abc1e79a/scapy/contrib/http2.py#L2344-L2361
def _reduce_dynamic_table(self, new_entry_size=0): # type: (int) -> None """_reduce_dynamic_table evicts entries from the dynamic table until it fits in less than the current size limit. The optional parameter, new_entry_size, allows the resize to happen so that a new entry of this ...
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_reduce_dynamic_table evicts entries from the dynamic table until it fits in less than the current size limit. The optional parameter, new_entry_size, allows the resize to happen so that a new entry of this size fits in. @param int new_entry_size: if called before adding a new entry, the...
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python
train
dpkp/kafka-python
kafka/client_async.py
https://github.com/dpkp/kafka-python/blob/f6a8a38937688ea2cc5dc13d3d1039493be5c9b5/kafka/client_async.py#L329-L339
def maybe_connect(self, node_id, wakeup=True): """Queues a node for asynchronous connection during the next .poll()""" if self._can_connect(node_id): self._connecting.add(node_id) # Wakeup signal is useful in case another thread is # blocked waiting for incoming netwo...
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Queues a node for asynchronous connection during the next .poll()
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python
train
secynic/ipwhois
ipwhois/scripts/ipwhois_cli.py
https://github.com/secynic/ipwhois/blob/b5d634d36b0b942d538d38d77b3bdcd815f155a0/ipwhois/scripts/ipwhois_cli.py#L313-L350
def generate_output(line='0', short=None, name=None, value=None, is_parent=False, colorize=True): """ The function for formatting CLI output results. Args: line (:obj:`str`): The line number (0-4). Determines indentation. Defaults to '0'. short (:obj:`str`): ...
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The function for formatting CLI output results. Args: line (:obj:`str`): The line number (0-4). Determines indentation. Defaults to '0'. short (:obj:`str`): The optional abbreviated name for a field. See hr.py for values. name (:obj:`str`): The optional name for a fi...
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python
train
chrisspen/burlap
burlap/apache.py
https://github.com/chrisspen/burlap/blob/a92b0a8e5206850bb777c74af8421ea8b33779bd/burlap/apache.py#L485-L516
def configure_modevasive(self): """ Installs the mod-evasive Apache module for combating DDOS attacks. https://www.linode.com/docs/websites/apache-tips-and-tricks/modevasive-on-apache """ r = self.local_renderer if r.env.modevasive_enabled: self.install_packa...
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Installs the mod-evasive Apache module for combating DDOS attacks. https://www.linode.com/docs/websites/apache-tips-and-tricks/modevasive-on-apache
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python
valid
aacanakin/glim
glim/command.py
https://github.com/aacanakin/glim/blob/71a20ac149a1292c0d6c1dc7414985ea51854f7a/glim/command.py#L125-L144
def match(self, args): """ Function dispatches the active command line utility. Args ---- args (argparse.parse_args()): The parsed arguments using parser.parse_args() function. Returns ------- command (glim.command.Command): the active co...
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Function dispatches the active command line utility. Args ---- args (argparse.parse_args()): The parsed arguments using parser.parse_args() function. Returns ------- command (glim.command.Command): the active command object.
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python
train
batiste/django-page-cms
pages/admin/views.py
https://github.com/batiste/django-page-cms/blob/3c72111eb7c3997a63c462c1776ffd8ce8c50a5d/pages/admin/views.py#L181-L184
def get_content(request, page_id, content_id): """Get the content for a particular page""" content = Content.objects.get(pk=content_id) return HttpResponse(content.body)
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Get the content for a particular page
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python
train
xolox/python-coloredlogs
scripts/generate-screenshots.py
https://github.com/xolox/python-coloredlogs/blob/1cbf0c6bbee400c6ddbc43008143809934ec3e79/scripts/generate-screenshots.py#L70-L84
def main(): """Command line interface.""" coloredlogs.install(level='debug') arguments = sys.argv[1:] if arguments: interpret_script(arguments[0]) else: logger.notice(compact(""" This script requires the 'urxvt' terminal emulator and the ImageMagick command li...
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Command line interface.
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python
train
log2timeline/plaso
plaso/engine/knowledge_base.py
https://github.com/log2timeline/plaso/blob/9c564698d2da3ffbe23607a3c54c0582ea18a6cc/plaso/engine/knowledge_base.py#L125-L142
def GetHostname(self, session_identifier=CURRENT_SESSION): """Retrieves the hostname related to the event. If the hostname is not stored in the event it is determined based on the preprocessing information that is stored inside the storage file. Args: session_identifier (Optional[str])): session...
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Retrieves the hostname related to the event. If the hostname is not stored in the event it is determined based on the preprocessing information that is stored inside the storage file. Args: session_identifier (Optional[str])): session identifier, where CURRENT_SESSION represents the active...
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python
train
PrefPy/prefpy
prefpy/utilityFunction.py
https://github.com/PrefPy/prefpy/blob/f395ba3782f05684fa5de0cece387a6da9391d02/prefpy/utilityFunction.py#L115-L128
def getScoringVector(self, orderVector): """ Returns the scoring vector [1,0,0,...,0]. This function is called by getUtilities() which is implemented in the parent class. :ivar list<int> orderVector: A list of integer representations for each candidate ordered from most pre...
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Returns the scoring vector [1,0,0,...,0]. This function is called by getUtilities() which is implemented in the parent class. :ivar list<int> orderVector: A list of integer representations for each candidate ordered from most preferred to least.
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python
train
zero-os/0-core
client/py-client/zeroos/core0/client/client.py
https://github.com/zero-os/0-core/blob/69f6ce845ab8b8ad805a79a415227e7ac566c218/client/py-client/zeroos/core0/client/client.py#L734-L750
def raw(self, command, arguments, queue=None, max_time=None, stream=False, tags=None, id=None): """ Implements the low level command call, this needs to build the command structure and push it on the correct queue. :param command: Command name to execute supported by the node (ex: core....
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Implements the low level command call, this needs to build the command structure and push it on the correct queue. :param command: Command name to execute supported by the node (ex: core.system, info.cpu, etc...) check documentation for list of built in commands :param a...
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python
train
daler/gffutils
gffutils/parser.py
https://github.com/daler/gffutils/blob/6f7f547cad898738a1bd0a999fd68ba68db2c524/gffutils/parser.py#L175-L360
def _split_keyvals(keyval_str, dialect=None): """ Given the string attributes field of a GFF-like line, split it into an attributes dictionary and a "dialect" dictionary which contains information needed to reconstruct the original string. Lots of logic here to handle all the corner cases. If ...
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Given the string attributes field of a GFF-like line, split it into an attributes dictionary and a "dialect" dictionary which contains information needed to reconstruct the original string. Lots of logic here to handle all the corner cases. If `dialect` is None, then do all the logic to infer a dialec...
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python
train
tensorflow/tensorboard
tensorboard/plugins/interactive_inference/interactive_inference_plugin.py
https://github.com/tensorflow/tensorboard/blob/8e5f497b48e40f2a774f85416b8a35ac0693c35e/tensorboard/plugins/interactive_inference/interactive_inference_plugin.py#L211-L228
def _delete_example(self, request): """Deletes the specified example. Args: request: A request that should contain 'index'. Returns: An empty response. """ index = int(request.args.get('index')) if index >= len(self.examples): return http_util.Respond(request, {'error': 'inva...
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Deletes the specified example. Args: request: A request that should contain 'index'. Returns: An empty response.
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python
train
SiLab-Bonn/pyBAR
pybar/fei4/register_utils.py
https://github.com/SiLab-Bonn/pyBAR/blob/5ad95bbcd41cd358825823fb78f396cfce23593e/pybar/fei4/register_utils.py#L182-L193
def reset_bunch_counter(self): '''Resetting Bunch Counter ''' logging.info('Resetting Bunch Counter') commands = [] commands.extend(self.register.get_commands("RunMode")) commands.extend(self.register.get_commands("BCR")) self.send_commands(commands) ...
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Resetting Bunch Counter
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python
train
orbingol/NURBS-Python
geomdl/exchange.py
https://github.com/orbingol/NURBS-Python/blob/b1c6a8b51cf143ff58761438e93ba6baef470627/geomdl/exchange.py#L159-L193
def export_csv(obj, file_name, point_type='evalpts', **kwargs): """ Exports control points or evaluated points as a CSV file. :param obj: a spline geometry object :type obj: abstract.SplineGeometry :param file_name: output file name :type file_name: str :param point_type: ``ctrlpts`` for contro...
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Exports control points or evaluated points as a CSV file. :param obj: a spline geometry object :type obj: abstract.SplineGeometry :param file_name: output file name :type file_name: str :param point_type: ``ctrlpts`` for control points or ``evalpts`` for evaluated points :type point_type: str ...
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python
train
ToFuProject/tofu
tofu/geom/_core.py
https://github.com/ToFuProject/tofu/blob/39d6b2e7ced9e13666572dfd37e19403f1d6ff8d/tofu/geom/_core.py#L2228-L2261
def get_summary(self, verb=False, max_columns=100, width=1000): """ Summary description of the object content as a pandas DataFrame """ # Make sure the data is accessible msg = "The data is not accessible because self.strip(2) was used !" assert self._dstrip['strip']<2, msg # Bu...
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Summary description of the object content as a pandas DataFrame
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python
train
stevearc/dql
dql/cli.py
https://github.com/stevearc/dql/blob/e9d3aa22873076dae5ebd02e35318aa996b1e56a/dql/cli.py#L487-L501
def do_local(self, host="localhost", port=8000): """ Connect to a local DynamoDB instance. Use 'local off' to disable. > local > local host=localhost port=8001 > local off """ port = int(port) if host == "off": self._local_endpoint = None ...
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Connect to a local DynamoDB instance. Use 'local off' to disable. > local > local host=localhost port=8001 > local off
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python
train
google/apitools
apitools/base/py/encoding_helper.py
https://github.com/google/apitools/blob/f3745a7ea535aa0e88b0650c16479b696d6fd446/apitools/base/py/encoding_helper.py#L667-L683
def _CheckForExistingMappings(mapping_type, message_type, python_name, json_name): """Validate that no mappings exist for the given values.""" if mapping_type == 'field': getter = GetCustomJsonFieldMapping elif mapping_type == 'enum': getter = GetCustomJsonEnumM...
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Validate that no mappings exist for the given values.
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python
train
PSPC-SPAC-buyandsell/von_anchor
von_anchor/anchor/base.py
https://github.com/PSPC-SPAC-buyandsell/von_anchor/blob/78ac1de67be42a676274f4bf71fe12f66e72f309/von_anchor/anchor/base.py#L202-L222
async def reseed(self, seed: str = None) -> None: """ Rotate key for VON anchor: generate new key, submit to ledger, update wallet. Raise WalletState if wallet is currently closed. :param seed: new seed for ed25519 key pair (default random) """ LOGGER.debug('BaseAnchor....
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Rotate key for VON anchor: generate new key, submit to ledger, update wallet. Raise WalletState if wallet is currently closed. :param seed: new seed for ed25519 key pair (default random)
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python
train
FujiMakoto/AgentML
agentml/__init__.py
https://github.com/FujiMakoto/AgentML/blob/c8cb64b460d876666bf29ea2c682189874c7c403/agentml/__init__.py#L610-L621
def format(self, message_format): """ Set the message format :param message_format: The format to set :type message_format: str """ if message_format not in self.formats: self._log.error('Invalid Message format specified: {format}'.format(format=message_forma...
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Set the message format :param message_format: The format to set :type message_format: str
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python
train
cloudtools/stacker
stacker/session_cache.py
https://github.com/cloudtools/stacker/blob/ad6013a03a560c46ba3c63c4d153336273e6da5d/stacker/session_cache.py#L20-L44
def get_session(region, profile=None): """Creates a boto3 session with a cache Args: region (str): The region for the session profile (str): The profile for the session Returns: :class:`boto3.session.Session`: A boto3 session with credential caching """ if profi...
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python
train
gpennington/PyMarvel
marvel/marvel.py
https://github.com/gpennington/PyMarvel/blob/2617162836f2b7c525ed6c4ff6f1e86a07284fd1/marvel/marvel.py#L196-L212
def get_creators(self, *args, **kwargs): """Fetches lists of creators. get /v1/public/creators :returns: CreatorDataWrapper >>> m = Marvel(public_key, private_key) >>> cdw = m.get_creators(lastName="Lee", orderBy="firstName,-modified", limit="5", offset="15") ...
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Fetches lists of creators. get /v1/public/creators :returns: CreatorDataWrapper >>> m = Marvel(public_key, private_key) >>> cdw = m.get_creators(lastName="Lee", orderBy="firstName,-modified", limit="5", offset="15") >>> print cdw.data.total 25 ...
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python
train
hydpy-dev/hydpy
hydpy/core/timetools.py
https://github.com/hydpy-dev/hydpy/blob/1bc6a82cf30786521d86b36e27900c6717d3348d/hydpy/core/timetools.py#L972-L987
def _guessunit(self): """Guess the unit of the period as the largest one, which results in an integer duration. """ if not self.days % 1: return 'd' elif not self.hours % 1: return 'h' elif not self.minutes % 1: return 'm' elif ...
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Guess the unit of the period as the largest one, which results in an integer duration.
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python
train
crate/crate-python
src/crate/client/http.py
https://github.com/crate/crate-python/blob/68e39c95f5bbe88b74bbfa26de4347fc644636a8/src/crate/client/http.py#L318-L331
def sql(self, stmt, parameters=None, bulk_parameters=None): """ Execute SQL stmt against the crate server. """ if stmt is None: return None data = _create_sql_payload(stmt, parameters, bulk_parameters) logger.debug( 'Sending request to %s with pay...
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Execute SQL stmt against the crate server.
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python
train
jobovy/galpy
galpy/potential/KuzminDiskPotential.py
https://github.com/jobovy/galpy/blob/9c5b9fe65d58835624dffe432be282060918ee08/galpy/potential/KuzminDiskPotential.py#L171-L187
def _surfdens(self,R,z,phi=0.,t=0.): """ NAME: _surfdens PURPOSE: evaluate the surface density INPUT: R - Cylindrical Galactocentric radius z - vertical height phi - azimuth t - time OUTPUT: Sigma (R,z) ...
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NAME: _surfdens PURPOSE: evaluate the surface density INPUT: R - Cylindrical Galactocentric radius z - vertical height phi - azimuth t - time OUTPUT: Sigma (R,z) HISTORY: 2018-08-19 - Written - Bovy (...
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python
train
sirrice/pygg
pygg/pygg.py
https://github.com/sirrice/pygg/blob/b36e19b3827e0a7d661de660b04d55a73f35896b/pygg/pygg.py#L448-L462
def make_master_binding(): """ wrap around ggplot() call to handle passed in data objects """ ggplot = make_ggplot2_binding("ggplot") def _ggplot(data, *args, **kwargs): data_var = data if not isinstance(data, basestring): data_var = "data" else: data = None stmt = ggplot(data_var,...
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wrap around ggplot() call to handle passed in data objects
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python
train
pygobject/pgi
pgi/overrides/Gtk.py
https://github.com/pygobject/pgi/blob/2090435df6241a15ec2a78379a36b738b728652c/pgi/overrides/Gtk.py#L561-L567
def add_from_string(self, buffer, length=-1): """add_from_string(buffer, length=-1) {{ all }} """ return Gtk.Builder.add_from_string(self, buffer, length)
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add_from_string(buffer, length=-1) {{ all }}
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python
train
mckib2/rawdatarinator
rawdatarinator/readMeasDataVB15.py
https://github.com/mckib2/rawdatarinator/blob/03a85fd8f5e380b424027d28e97972bd7a6a3f1b/rawdatarinator/readMeasDataVB15.py#L32-L53
def get_yaps_by_name(root,name,afun=lambda x:x,default=None): """From XML root, return value of node matching attribute 'name'. Arguments: root (Element) Root XML node (xml.etree.ElementTree Element). This is the root of the entire XML document, not the YAPS ...
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From XML root, return value of node matching attribute 'name'. Arguments: root (Element) Root XML node (xml.etree.ElementTree Element). This is the root of the entire XML document, not the YAPS subtree. name (String) name='name' attribute of Pa...
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python
train
DataONEorg/d1_python
client_cli/src/d1_cli/impl/command_parser.py
https://github.com/DataONEorg/d1_python/blob/3ac4d4f3ca052d3e8641a6a329cab526c8ddcb0d/client_cli/src/d1_cli/impl/command_parser.py#L565-L587
def _print_help(self): """Custom help message to group commands by functionality.""" msg = """Commands (type help <command> for details) CLI: help history exit quit Session, General: set load save reset Session, Access Control: allowaccess denyaccess clearaccess Session, Repl...
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Custom help message to group commands by functionality.
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python
train
google/grr
grr/client/grr_response_client/vfs.py
https://github.com/google/grr/blob/5cef4e8e2f0d5df43ea4877e9c798e0bf60bfe74/grr/client/grr_response_client/vfs.py#L209-L224
def VFSMultiOpen(pathspecs, progress_callback=None): """Opens multiple files specified by given path-specs. See documentation for `VFSOpen` for more information. Args: pathspecs: A list of pathspec instances of files to open. progress_callback: A callback function to call to notify about progress Ret...
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Opens multiple files specified by given path-specs. See documentation for `VFSOpen` for more information. Args: pathspecs: A list of pathspec instances of files to open. progress_callback: A callback function to call to notify about progress Returns: A context manager yielding file-like objects.
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python
train
square/pylink
pylink/jlink.py
https://github.com/square/pylink/blob/81dda0a191d923a8b2627c52cb778aba24d279d7/pylink/jlink.py#L3175-L3198
def coresight_write(self, reg, data, ap=True): """Writes an Ap/DP register on a CoreSight DAP. Note: ``coresight_configure()`` must be called prior to calling this method. Args: self (JLink): the ``JLink`` instance reg (int): index of DP/AP register to write ...
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Writes an Ap/DP register on a CoreSight DAP. Note: ``coresight_configure()`` must be called prior to calling this method. Args: self (JLink): the ``JLink`` instance reg (int): index of DP/AP register to write data (int): data to write ap (bool): ``True...
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python
train
loli/medpy
medpy/filter/noise.py
https://github.com/loli/medpy/blob/95216b9e22e7ce301f0edf953ee2a2f1b6c6aee5/medpy/filter/noise.py#L168-L209
def separable_convolution(input, weights, output=None, mode="reflect", cval=0.0, origin=0): r""" Calculate a n-dimensional convolution of a separable kernel to a n-dimensional input. Achieved by calling convolution1d along the first axis, obtaining an intermediate image, on which the next convoluti...
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r""" Calculate a n-dimensional convolution of a separable kernel to a n-dimensional input. Achieved by calling convolution1d along the first axis, obtaining an intermediate image, on which the next convolution1d along the second axis is called and so on. Parameters ---------- input : a...
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python
train
gwastro/pycbc
pycbc/weave.py
https://github.com/gwastro/pycbc/blob/7a64cdd104d263f1b6ea0b01e6841837d05a4cb3/pycbc/weave.py#L32-L64
def pycbc_compile_function(code,arg_names,local_dict,global_dict, module_dir, compiler='', verbose=1, support_code=None, headers=None, customize=None, type_converters=None, ...
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Dummy wrapper around scipy weave compile to implement file locking
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python
train
wonambi-python/wonambi
wonambi/widgets/spectrum.py
https://github.com/wonambi-python/wonambi/blob/1d8e3d7e53df8017c199f703bcab582914676e76/wonambi/widgets/spectrum.py#L104-L117
def create(self): """Create empty scene for power spectrum.""" self.idx_chan = QComboBox() self.idx_chan.activated.connect(self.display_window) self.idx_fig = QGraphicsView(self) self.idx_fig.scale(1, -1) layout = QVBoxLayout() layout.addWidget(self.idx_chan) ...
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Create empty scene for power spectrum.
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python
train
google/grr
grr/server/grr_response_server/export.py
https://github.com/google/grr/blob/5cef4e8e2f0d5df43ea4877e9c798e0bf60bfe74/grr/server/grr_response_server/export.py#L1187-L1198
def Convert(self, metadata, grr_message, token=None): """Converts GrrMessage into a set of RDFValues. Args: metadata: ExportedMetadata to be used for conversion. grr_message: GrrMessage to be converted. token: Security token. Returns: List or generator with resulting RDFValues. ...
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Converts GrrMessage into a set of RDFValues. Args: metadata: ExportedMetadata to be used for conversion. grr_message: GrrMessage to be converted. token: Security token. Returns: List or generator with resulting RDFValues.
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python
train
SoCo/SoCo
soco/music_services/data_structures.py
https://github.com/SoCo/SoCo/blob/671937e07d7973b78c0cbee153d4f3ad68ec48c6/soco/music_services/data_structures.py#L102-L149
def parse_response(service, response, search_type): """Parse the response to a music service query and return a SearchResult Args: service (MusicService): The music service that produced the response response (OrderedDict): The response from the soap client call search_type (str): A str...
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Parse the response to a music service query and return a SearchResult Args: service (MusicService): The music service that produced the response response (OrderedDict): The response from the soap client call search_type (str): A string that indicates the search type that the res...
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python
train
acutesoftware/virtual-AI-simulator
vais/simulator.py
https://github.com/acutesoftware/virtual-AI-simulator/blob/57de679a5b1a58c38fefe6aea58af1f3a7e79c58/vais/simulator.py#L93-L105
def command(self, cmd, agent, src='admin', password=''): """ takes a command from a source 'src' and if access is allowed (future implementation) then execute the command on the 'agent' """ print(src, 'says ' + cmd['type'] + ' agent', agent.name, '', cmd['direction'],'...
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takes a command from a source 'src' and if access is allowed (future implementation) then execute the command on the 'agent'
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python
train
tgbugs/pyontutils
pyontutils/core.py
https://github.com/tgbugs/pyontutils/blob/3d913db29c177db39151592909a4f56170ef8b35/pyontutils/core.py#L28-L36
def relative_resources(pathstring, failover='nifstd/resources'): """ relative paths to resources in this repository `failover` matches the location relative to the github location (usually for prov purposes) """ if working_dir is None: return Path(failover, pathstring).resolve() els...
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relative paths to resources in this repository `failover` matches the location relative to the github location (usually for prov purposes)
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python
train
SBRG/ssbio
ssbio/io/__init__.py
https://github.com/SBRG/ssbio/blob/e9449e64ffc1a1f5ad07e5849aa12a650095f8a2/ssbio/io/__init__.py#L9-L17
def save_json(obj, outfile, allow_nan=True, compression=False): """Save an ssbio object as a JSON file using json_tricks""" if compression: with open(outfile, 'wb') as f: dump(obj, f, allow_nan=allow_nan, compression=compression) else: with open(outfile, 'w') as f: du...
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Save an ssbio object as a JSON file using json_tricks
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python
train
mitsei/dlkit
dlkit/json_/assessment/sessions.py
https://github.com/mitsei/dlkit/blob/445f968a175d61c8d92c0f617a3c17dc1dc7c584/dlkit/json_/assessment/sessions.py#L567-L585
def get_next_question(self, assessment_section_id, item_id): """Gets the next question in this assesment section. arg: assessment_section_id (osid.id.Id): ``Id`` of the ``AssessmentSection`` arg: item_id (osid.id.Id): ``Id`` of the ``Item`` return: (osid.assessment...
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Gets the next question in this assesment section. arg: assessment_section_id (osid.id.Id): ``Id`` of the ``AssessmentSection`` arg: item_id (osid.id.Id): ``Id`` of the ``Item`` return: (osid.assessment.Question) - the next question raise: IllegalState - ``has_next...
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python
train
sethmlarson/virtualbox-python
virtualbox/library.py
https://github.com/sethmlarson/virtualbox-python/blob/706c8e3f6e3aee17eb06458e73cbb4bc2d37878b/virtualbox/library.py#L9565-L9583
def get_values_by_type(self, type_p, which): """This is the same as :py:func:`get_description_by_type` except that you can specify which value types should be returned. See :py:class:`VirtualSystemDescriptionValueType` for possible values. in type_p of type :class:`VirtualSystemDescri...
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This is the same as :py:func:`get_description_by_type` except that you can specify which value types should be returned. See :py:class:`VirtualSystemDescriptionValueType` for possible values. in type_p of type :class:`VirtualSystemDescriptionType` in which of type :class:`VirtualSyst...
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python
train
globocom/GloboNetworkAPI-client-python
networkapiclient/ApiNetworkIPv4.py
https://github.com/globocom/GloboNetworkAPI-client-python/blob/cf34f913da48d9abbf750114f5d2ac4b2dde137d/networkapiclient/ApiNetworkIPv4.py#L22-L33
def deploy(self, id_networkv4): """Deploy network in equipments and set column 'active = 1' in tables redeipv4 :param id_networkv4: ID for NetworkIPv4 :return: Equipments configuration output """ data = dict() uri = 'api/networkv4/%s/equipments/' % id_networkv4 ...
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Deploy network in equipments and set column 'active = 1' in tables redeipv4 :param id_networkv4: ID for NetworkIPv4 :return: Equipments configuration output
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python
train
squaresLab/BugZoo
bugzoo/mgr/bug.py
https://github.com/squaresLab/BugZoo/blob/68664f1977e85b37a78604f7c570382ffae1fa3b/bugzoo/mgr/bug.py#L73-L80
def is_installed(self, bug: Bug) -> bool: """ Determines whether or not the Docker image for a given bug has been installed onto this server. See: `BuildManager.is_installed` """ return self.__installation.build.is_installed(bug.image)
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Determines whether or not the Docker image for a given bug has been installed onto this server. See: `BuildManager.is_installed`
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python
train
ratt-ru/PyMORESANE
pymoresane/iuwt_convolution.py
https://github.com/ratt-ru/PyMORESANE/blob/b024591ad0bbb69320d08841f28a2c27f62ae1af/pymoresane/iuwt_convolution.py#L142-L158
def pad_array(in1): """ Simple convenience function to pad arrays for linear convolution. INPUTS: in1 (no default): Input array which is to be padded. OUTPUTS: out1 Padded version of the input. """ padded_size = 2*np.array(in1.shape) out1 = np.zeros([padd...
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Simple convenience function to pad arrays for linear convolution. INPUTS: in1 (no default): Input array which is to be padded. OUTPUTS: out1 Padded version of the input.
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python
train
log2timeline/plaso
plaso/lib/timelib.py
https://github.com/log2timeline/plaso/blob/9c564698d2da3ffbe23607a3c54c0582ea18a6cc/plaso/lib/timelib.py#L206-L246
def CopyToDatetime(cls, timestamp, timezone, raise_error=False): """Copies the timestamp to a datetime object. Args: timestamp: The timestamp which is an integer containing the number of micro seconds since January 1, 1970, 00:00:00 UTC. timezone: The timezone (pytz.timezone) objec...
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Copies the timestamp to a datetime object. Args: timestamp: The timestamp which is an integer containing the number of micro seconds since January 1, 1970, 00:00:00 UTC. timezone: The timezone (pytz.timezone) object. raise_error: Boolean that if set to True will not absorb an Ove...
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python
train
PMBio/limix-backup
limix/varDecomp/varianceDecomposition.py
https://github.com/PMBio/limix-backup/blob/1e201fdb5c694d0d5506f207f3de65d8ef66146c/limix/varDecomp/varianceDecomposition.py#L954-L965
def _getLaplaceCovar(self): """ Internal function for estimating parameter uncertainty Returns: the """ assert self.init, 'GP not initialised' assert self.fast==False, 'Not supported for fast implementation' if self.cache['Sigma'] is None: ...
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Internal function for estimating parameter uncertainty Returns: the
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python
train
ahmontero/dop
dop/client.py
https://github.com/ahmontero/dop/blob/40354ac6feefe92a7555fe2d1834138c9a03e518/dop/client.py#L262-L299
def resize_droplet(self, droplet_id, size): """ This method allows you to resize a specific droplet to a different size. This will affect the number of processors and memory allocated to the droplet. Required parameters: droplet_id: Integer, this is the id o...
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python
train
flowersteam/explauto
explauto/sensorimotor_model/inverse/optimize.py
https://github.com/flowersteam/explauto/blob/cf0f81ecb9f6412f7276a95bd27359000e1e26b6/explauto/sensorimotor_model/inverse/optimize.py#L46-L54
def _error(self, x): """Error function. Once self.y_desired has been defined, compute the error of input x using the forward model. """ y_pred = self.fmodel.predict_y(x) err_v = y_pred - self.goal error = sum(e*e for e in err_v) return error
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Error function. Once self.y_desired has been defined, compute the error of input x using the forward model.
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python
train
sashka/flask-googleauth
flask_googleauth.py
https://github.com/sashka/flask-googleauth/blob/4e481d645f1bb22124a6d79c7881746004cf4369/flask_googleauth.py#L292-L304
def required(self, fn): """Request decorator. Forces authentication.""" @functools.wraps(fn) def decorated(*args, **kwargs): if (not self._check_auth() # Don't try to force authentication if the request is part # of the authentication process - otherwise...
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Request decorator. Forces authentication.
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python
train
saltstack/salt
salt/utils/dns.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/utils/dns.py#L859-L911
def spf_rec(rdata): ''' Validate and parse DNS record data for SPF record(s) :param rdata: DNS record data :return: dict w/fields ''' spf_fields = rdata.split(' ') if not spf_fields.pop(0).startswith('v=spf'): raise ValueError('Not an SPF record') res = OrderedDict() mods = ...
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Validate and parse DNS record data for SPF record(s) :param rdata: DNS record data :return: dict w/fields
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python
train
MoseleyBioinformaticsLab/nmrstarlib
nmrstarlib/csviewer.py
https://github.com/MoseleyBioinformaticsLab/nmrstarlib/blob/f2adabbca04d5a134ce6ba3211099d1457787ff2/nmrstarlib/csviewer.py#L70-L122
def csview(self, view=False): """View chemical shift values organized by amino acid residue. :param view: Open in default image viewer or save file in current working directory quietly. :type view: :py:obj:`True` or :py:obj:`False` :return: None :rtype: :py:obj:`None` ""...
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View chemical shift values organized by amino acid residue. :param view: Open in default image viewer or save file in current working directory quietly. :type view: :py:obj:`True` or :py:obj:`False` :return: None :rtype: :py:obj:`None`
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python
train
deschler/django-modeltranslation
modeltranslation/manager.py
https://github.com/deschler/django-modeltranslation/blob/18fec04a5105cbd83fc3759f4fda20135b3a848c/modeltranslation/manager.py#L79-L87
def append_translated(model, fields): "If translated field is encountered, add also all its translation fields." fields = set(fields) from modeltranslation.translator import translator opts = translator.get_options_for_model(model) for key, translated in opts.fields.items(): if key in fields...
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If translated field is encountered, add also all its translation fields.
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python
train
manns/pyspread
pyspread/src/gui/_main_window.py
https://github.com/manns/pyspread/blob/0e2fd44c2e0f06605efc3058c20a43a8c1f9e7e0/pyspread/src/gui/_main_window.py#L726-L734
def OnTableListToggle(self, event): """Table list toggle event handler""" table_list_panel_info = \ self.main_window._mgr.GetPane("table_list_panel") self._toggle_pane(table_list_panel_info) event.Skip()
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Table list toggle event handler
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python
train
nir0s/ghost
ghost.py
https://github.com/nir0s/ghost/blob/77da967a4577ca4cf100cfe34e87b39ad88bf21c/ghost.py#L942-L946
def init(self): """Create an Elasticsearch index if necessary """ # ignore 400 (IndexAlreadyExistsException) when creating an index self.es.indices.create(index=self.params['index'], ignore=400)
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Create an Elasticsearch index if necessary
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python
valid
tensorflow/tensor2tensor
tensor2tensor/data_generators/imagenet.py
https://github.com/tensorflow/tensor2tensor/blob/272500b6efe353aeb638d2745ed56e519462ca31/tensor2tensor/data_generators/imagenet.py#L591-L607
def preprocess_for_train(image, image_size=224, normalize=True): """Preprocesses the given image for evaluation. Args: image: `Tensor` representing an image of arbitrary size. image_size: int, how large the output image should be. normalize: bool, if True the image is normalized. Returns: A prep...
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Preprocesses the given image for evaluation. Args: image: `Tensor` representing an image of arbitrary size. image_size: int, how large the output image should be. normalize: bool, if True the image is normalized. Returns: A preprocessed image `Tensor`.
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python
train
Azure/azure-sdk-for-python
azure-servicemanagement-legacy/azure/servicemanagement/_http/winhttp.py
https://github.com/Azure/azure-sdk-for-python/blob/d7306fde32f60a293a7567678692bdad31e4b667/azure-servicemanagement-legacy/azure/servicemanagement/_http/winhttp.py#L418-L428
def putrequest(self, method, uri): ''' Connects to host and sends the request. ''' protocol = unicode(self.protocol + '://') url = protocol + self.host + unicode(uri) self._httprequest.set_timeout(self.timeout) self._httprequest.open(unicode(method), url) # sets certifi...
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Connects to host and sends the request.
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python
test