kejian/codesearchnet-python-rebalanced · Datasets at Hugging Face

text stringlengths 75 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 0.18
def experimentVaryingSynapseSampling(expParams, sampleSizeDistalList, sampleSizeProximalList): """ Test multi-column convergence with varying amount of proximal/distal sampling :return: """ numRpts = 20 df = None args = [] for sa...	[ "def", "experimentVaryingSynapseSampling", "(", "expParams", ",", "sampleSizeDistalList", ",", "sampleSizeProximalList", ")", ":", "numRpts", "=", "20", "df", "=", "None", "args", "=", "[", "]", "for", "sampleSizeProximal", "in", "sampleSizeProximalList", ":", "for"...	31.212766	0.011897
def getchild(self, window_name, child_name='', role='', parent=''): """ Gets the list of object available in the window, which matches component name or role name or both. @param window_name: Window name to look for, either full name, LDTP's name convention, or a Unix glob. ...	[ "def", "getchild", "(", "self", ",", "window_name", ",", "child_name", "=", "''", ",", "role", "=", "''", ",", "parent", "=", "''", ")", ":", "matches", "=", "[", "]", "if", "role", ":", "role", "=", "re", ".", "sub", "(", "' '", ",", "'_'", ",...	41.0625	0.002229
def getCmdParams(cmd, request, **fields): """Update or fill the fields parameters depending on command code. Both cmd and drAppId can be provided # noqa: E501 in string or int format.""" drCode = None params = None drAppId = None # Fetch the parameters if cmd is found in dict if isinstan...	[ "def", "getCmdParams", "(", "cmd", ",", "request", ",", "", "", "fields", ")", ":", "drCode", "=", "None", "params", "=", "None", "drAppId", "=", "None", "# Fetch the parameters if cmd is found in dict", "if", "isinstance", "(", "cmd", ",", "int", ")", ":"...	41.107692	0.000365
def _prepare_fabric_fw_internal(self, tenant_id, fw_dict, is_fw_virt, result): """Internal routine to prepare the fabric. This creates an entry in FW DB and runs the SM. """ if not self.auto_nwk_create: LOG.info("Auto network creation disa...	[ "def", "_prepare_fabric_fw_internal", "(", "self", ",", "tenant_id", ",", "fw_dict", ",", "is_fw_virt", ",", "result", ")", ":", "if", "not", "self", ".", "auto_nwk_create", ":", "LOG", ".", "info", "(", "\"Auto network creation disabled\"", ")", "return", "Fals...	46.410256	0.001623
def getJson(cls, url, method='GET', headers={}, data=None, socket=None, timeout=120): """Fetch a JSON result via HTTP """ if not 'Content-Type' in headers: headers['Content-Type'] = ['application/json'] body = yield cls().getBody(url, method, headers, data, socket, timeout) ...	[ "def", "getJson", "(", "cls", ",", "url", ",", "method", "=", "'GET'", ",", "headers", "=", "{", "}", ",", "data", "=", "None", ",", "socket", "=", "None", ",", "timeout", "=", "120", ")", ":", "if", "not", "'Content-Type'", "in", "headers", ":", ...	39.555556	0.010989
def prepareSiiImport(siiContainer, specfile, path, qcAttr, qcLargerBetter, qcCutoff, rankAttr, rankLargerBetter): """Prepares the ``siiContainer`` for the import of peptide spectrum matching results. Adds entries to ``siiContainer.container`` and to ``siiContainer.info``. :param si...	[ "def", "prepareSiiImport", "(", "siiContainer", ",", "specfile", ",", "path", ",", "qcAttr", ",", "qcLargerBetter", ",", "qcCutoff", ",", "rankAttr", ",", "rankLargerBetter", ")", ":", "if", "specfile", "not", "in", "siiContainer", ".", "info", ":", "siiContai...	51.864865	0.002046
def _render(item: ConfigItem, indent: str = "") -> str: """ Render a single config item, with the provided indent """ optional = item.default_value != _NO_DEFAULT if is_configurable(item.annotation): rendered_annotation = f"{item.annotation} (configurable)" else: rendered_annota...	[ "def", "_render", "(", "item", ":", "ConfigItem", ",", "indent", ":", "str", "=", "\"\"", ")", "->", "str", ":", "optional", "=", "item", ".", "default_value", "!=", "_NO_DEFAULT", "if", "is_configurable", "(", "item", ".", "annotation", ")", ":", "rende...	30.043478	0.001403
def from_networkx(cls, G, positions, nodes=None, **kwargs): """ Generate a HoloViews Graph from a networkx.Graph object and networkx layout function or dictionary of node positions. Any keyword arguments will be passed to the layout function. By default it will extract all node a...	[ "def", "from_networkx", "(", "cls", ",", "G", ",", "positions", ",", "nodes", "=", "None", ",", "", "", "kwargs", ")", ":", "if", "not", "isinstance", "(", "positions", ",", "dict", ")", ":", "positions", "=", "positions", "(", "G", ",", "", ""...	42.021739	0.002274
def verify(self, id): """Verify a custom domain Args: id (str): The id of the custom domain to delete See: https://auth0.com/docs/api/management/v2#!/Custom_Domains/post_verify """ url = self._url('%s/verify' % (id)) return self.client.post(url)	[ "def", "verify", "(", "self", ",", "id", ")", ":", "url", "=", "self", ".", "_url", "(", "'%s/verify'", "%", "(", "id", ")", ")", "return", "self", ".", "client", ".", "post", "(", "url", ")" ]	27	0.009772
def get_weichert_factor(beta, cmag, cyear, end_year): ''' Gets the Weichert adjustment factor for each the magnitude bins :param float beta: Beta value of Gutenberg & Richter parameter (b * log(10.)) :param np.ndarray cmag: Magnitude values of the completeness table :param np.ndar...	[ "def", "get_weichert_factor", "(", "beta", ",", "cmag", ",", "cyear", ",", "end_year", ")", ":", "if", "len", "(", "cmag", ")", ">", "1", ":", "# cval corresponds to the mid-point of the completeness bins", "# In the original code it requires that the magnitude bins be", ...	34.6875	0.000876
def delete(self, item): """Deletes the specified item.""" uri = "/%s/%s" % (self.uri_base, utils.get_id(item)) return self._delete(uri)	[ "def", "delete", "(", "self", ",", "item", ")", ":", "uri", "=", "\"/%s/%s\"", "%", "(", "self", ".", "uri_base", ",", "utils", ".", "get_id", "(", "item", ")", ")", "return", "self", ".", "_delete", "(", "uri", ")" ]	39	0.012579
def filter_geoquiet(sat, maxKp=None, filterTime=None, kpData=None, kp_inst=None): """Filters pysat.Instrument data for given time after Kp drops below gate. Loads Kp data for the same timeframe covered by sat and sets sat.data to NaN for times when Kp > maxKp and for filterTime after Kp drops below max...	[ "def", "filter_geoquiet", "(", "sat", ",", "maxKp", "=", "None", ",", "filterTime", "=", "None", ",", "kpData", "=", "None", ",", "kp_inst", "=", "None", ")", ":", "if", "kp_inst", "is", "not", "None", ":", "kp_inst", ".", "load", "(", "date", "=", ...	33.705882	0.008479
def mark_as_nsfw(self, unmark_nsfw=False): """Mark as Not Safe For Work. Requires that the currently authenticated user is the author of the submission, has the modposts oauth scope or has user/password authentication as a mod of the subreddit. :returns: The json response from ...	[ "def", "mark_as_nsfw", "(", "self", ",", "unmark_nsfw", "=", "False", ")", ":", "def", "mark_as_nsfw_helper", "(", "self", ")", ":", "# pylint: disable=W0613", "# It is necessary to have the 'self' argument as it's needed in", "# restrict_access to determine what class the decora...	43.24	0.00181
def is_treshold_reached(self, scraped_request): """Check if similar requests to the given requests have already been crawled X times. Where X is the minimum treshold amount from the options. Args: scraped_request (:class:`nyawc.http.Request`): The request that possibly reached the ...	[ "def", "is_treshold_reached", "(", "self", ",", "scraped_request", ")", ":", "for", "route", "in", "self", ".", "__routing_options", ".", "routes", ":", "if", "re", ".", "compile", "(", "route", ")", ".", "match", "(", "scraped_request", ".", "url", ")", ...	39.55	0.008642
def heads(directory=None, verbose=False, resolve_dependencies=False): """Show current available heads in the script directory""" if alembic_version >= (0, 7, 0): config = current_app.extensions['migrate'].migrate.get_config( directory) command.heads(config, verbose=verbose, ...	[ "def", "heads", "(", "directory", "=", "None", ",", "verbose", "=", "False", ",", "resolve_dependencies", "=", "False", ")", ":", "if", "alembic_version", ">=", "(", "0", ",", "7", ",", "0", ")", ":", "config", "=", "current_app", ".", "extensions", "[...	49.333333	0.002212
def stack_decoders(self, layers): """ Stack decoding layers. """ self.stack(layers) self.decoding_layers.extend(layers)	[ "def", "stack_decoders", "(", "self", ",", "", "layers", ")", ":", "self", ".", "stack", "(", "", "layers", ")", "self", ".", "decoding_layers", ".", "extend", "(", "layers", ")" ]	26	0.012422
def get_git_hash(from_url): """ Get the git commit hash of HEAD from :from_url. Args: from_url: The file system url of our git repository. Returns: git commit hash of HEAD, or empty string. """ from benchbuild.utils.cmd import git if from_url is None: return "" ...	[ "def", "get_git_hash", "(", "from_url", ")", ":", "from", "benchbuild", ".", "utils", ".", "cmd", "import", "git", "if", "from_url", "is", "None", ":", "return", "\"\"", "if", "not", "path", ".", "exists", "(", "from_url", ")", ":", "return", "\"\"", "...	22.894737	0.002208
def exhaustive_fragment_check( self, ontology:pd.DataFrame, iri_curie_fragment_predicate:str = 'iri', cross_reference_iris:bool = False, cross_reference_fragments:bool = False, ...	[ "def", "exhaustive_fragment_check", "(", "self", ",", "ontology", ":", "pd", ".", "DataFrame", ",", "iri_curie_fragment_predicate", ":", "str", "=", "'iri'", ",", "cross_reference_iris", ":", "bool", "=", "False", ",", "cross_reference_fragments", ":", "bool", "="...	53.744681	0.008554
def add(self, key, value): """Add CLI Arg to lists value. Args: key (string): The CLI Args key (e.g., --name). value (string): The CLI Args value (e.g., bob). """ if isinstance(value, list): # TODO: support env vars in list w/masked values ...	[ "def", "add", "(", "self", ",", "key", ",", "value", ")", ":", "if", "isinstance", "(", "value", ",", "list", ")", ":", "# TODO: support env vars in list w/masked values", "for", "val", "in", "value", ":", "self", ".", "_add_arg_python", "(", "key", ",", "...	41.310345	0.001631
def explain(self, bindVars={}, allPlans = False) : """Returns an explanation of the query. Setting allPlans to True will result in ArangoDB returning all possible plans. False returns only the optimal plan""" return self.database.explainAQLQuery(self.query, bindVars, allPlans)	[ "def", "explain", "(", "self", ",", "bindVars", "=", "{", "}", ",", "allPlans", "=", "False", ")", ":", "return", "self", ".", "database", ".", "explainAQLQuery", "(", "self", ".", "query", ",", "bindVars", ",", "allPlans", ")" ]	97	0.020478
def _handle_result_by_key_slice(self, key_slice): """ Handle processing when the result argument provided is a key slice. """ invalid_options = ('key', 'keys', 'startkey', 'endkey') if any(x in invalid_options for x in self.options): raise ResultException(102, invalid...	[ "def", "_handle_result_by_key_slice", "(", "self", ",", "key_slice", ")", ":", "invalid_options", "=", "(", "'key'", ",", "'keys'", ",", "'startkey'", ",", "'endkey'", ")", "if", "any", "(", "x", "in", "invalid_options", "for", "x", "in", "self", ".", "opt...	37.428571	0.00186
def add_infos(self, keyvals, *kwargs): """Adds the given info and returns a dict composed of just this added info.""" kv_pairs = [] for key, val in keyvals: key = key.strip() val = str(val).strip() if ':' in key: raise ValueError('info key "{}" must not contain a colon.'.format(k...	[ "def", "add_infos", "(", "self", ",", "", "keyvals", ",", "", "*", "kwargs", ")", ":", "kv_pairs", "=", "[", "]", "for", "key", ",", "val", "in", "keyvals", ":", "key", "=", "key", ".", "strip", "(", ")", "val", "=", "str", "(", "val", ")", ...	34.695652	0.014634
def keyPressEvent(self, event): """Reimplement Qt method""" if event == QKeySequence.Copy: self.copy() else: QTableView.keyPressEvent(self, event)	[ "def", "keyPressEvent", "(", "self", ",", "event", ")", ":", "if", "event", "==", "QKeySequence", ".", "Copy", ":", "self", ".", "copy", "(", ")", "else", ":", "QTableView", ".", "keyPressEvent", "(", "self", ",", "event", ")" ]	32.333333	0.01005
def write(self, s: str) -> None: """Add str to internal bytes buffer and if echo is True, echo contents to inner stream""" if not isinstance(s, str): raise TypeError('write() argument must be str, not {}'.format(type(s))) if not self.pause_storage: self.buffer.byte_buf +...	[ "def", "write", "(", "self", ",", "s", ":", "str", ")", "->", "None", ":", "if", "not", "isinstance", "(", "s", ",", "str", ")", ":", "raise", "TypeError", "(", "'write() argument must be str, not {}'", ".", "format", "(", "type", "(", "s", ")", ")", ...	47.444444	0.011494
def _create_simulated_annealing_expander(schedule): ''' Creates an expander that has a random chance to choose a node that is worse than the current (first) node, but that chance decreases with time. ''' def _expander(fringe, iteration, viewer): T = schedule(iteration) current = frin...	[ "def", "_create_simulated_annealing_expander", "(", "schedule", ")", ":", "def", "_expander", "(", "fringe", ",", "iteration", ",", "viewer", ")", ":", "T", "=", "schedule", "(", "iteration", ")", "current", "=", "fringe", "[", "0", "]", "neighbors", "=", ...	33.041667	0.001225
def update_state(self): """ Update state with latest info from Wink API. """ response = self.api_interface.local_get_state(self, type_override="binary_switche") return self._update_state_from_response(response)	[ "def", "update_state", "(", "self", ")", ":", "response", "=", "self", ".", "api_interface", ".", "local_get_state", "(", "self", ",", "type_override", "=", "\"binary_switche\"", ")", "return", "self", ".", "_update_state_from_response", "(", "response", ")" ]	41.666667	0.011765
def digest_secure_bootloader(args): """ Calculate the digest of a bootloader image, in the same way the hardware secure boot engine would do so. Can be used with a pre-loaded key to update a secure bootloader. """ if args.iv is not None: print("WARNING: --iv argument is for TESTING PURPOSES ONLY...	[ "def", "digest_secure_bootloader", "(", "args", ")", ":", "if", "args", ".", "iv", "is", "not", "None", ":", "print", "(", "\"WARNING: --iv argument is for TESTING PURPOSES ONLY\"", ")", "iv", "=", "args", ".", "iv", ".", "read", "(", "128", ")", "else", ":"...	42.224138	0.001995
def PCM_encode(x,N_bits): """ Parameters ---------- x : signal samples to be PCM encoded N_bits ; bit precision of PCM samples Returns ------- x_bits = encoded serial bit stream of 0/1 values. MSB first. Mark Wickert, Mark 2015 """ xq = np.int16(np.rint(x2*(N_bits-1))) ...	[ "def", "PCM_encode", "(", "x", ",", "N_bits", ")", ":", "xq", "=", "np", ".", "int16", "(", "np", ".", "rint", "(", "x", "", "2", "*", "(", "N_bits", "-", "1", ")", ")", ")", "x_bits", "=", "np", ".", "zeros", "(", "(", "N_bits", ",", "le...	27.05	0.014286
def _maybe_validate_distributions(distributions, dtype_override, validate_args): """Checks that `distributions` satisfies all assumptions.""" assertions = [] if not _is_iterable(distributions) or not distributions: raise ValueError('`distributions` must be a list of one or more ' 'distri...	[ "def", "_maybe_validate_distributions", "(", "distributions", ",", "dtype_override", ",", "validate_args", ")", ":", "assertions", "=", "[", "]", "if", "not", "_is_iterable", "(", "distributions", ")", "or", "not", "distributions", ":", "raise", "ValueError", "(",...	40.591837	0.008346
def make_full_ivar(): """ take the scatters and skylines and make final ivars """ # skylines come as an ivar # don't use them for now, because I don't really trust them... # skylines = np.load("%s/skylines.npz" %DATA_DIR)['arr_0'] ref_flux = np.load("%s/ref_flux_all.npz" %DATA_DIR)['arr_0'] re...	[ "def", "make_full_ivar", "(", ")", ":", "# skylines come as an ivar", "# don't use them for now, because I don't really trust them...", "# skylines = np.load(\"%s/skylines.npz\" %DATA_DIR)['arr_0']", "ref_flux", "=", "np", ".", "load", "(", "\"%s/ref_flux_all.npz\"", "%", "DATA_DIR",...	46.375	0.009683
def _call(self, x, out=None): """Extend ``x`` from the subspace.""" if out is None: out = self.range.zero() else: out.set_zero() out[self.index] = x return out	[ "def", "_call", "(", "self", ",", "x", ",", "out", "=", "None", ")", ":", "if", "out", "is", "None", ":", "out", "=", "self", ".", "range", ".", "zero", "(", ")", "else", ":", "out", ".", "set_zero", "(", ")", "out", "[", "self", ".", "index"...	24	0.008929
def create_director(self, service_id, version_number, name, quorum=75, _type=FastlyDirectorType.RANDOM, retries=5, shield=None): """Create a director for a particular service and version.""" body = self._formdata({ "name": name, "quorum": quorum, "type": _type, "retries": retries, "shield...	[ "def", "create_director", "(", "self", ",", "service_id", ",", "version_number", ",", "name", ",", "quorum", "=", "75", ",", "_type", "=", "FastlyDirectorType", ".", "RANDOM", ",", "retries", "=", "5", ",", "shield", "=", "None", ")", ":", "body", "=", ...	29.294118	0.048638
def save(self, commit=True): """ Override save method to also save the localised fields. """ # set the localised fields for localized_field in self.instance.localized_fields: setattr(self.instance, localized_field, self.cleaned_data[localized_field]) return s...	[ "def", "save", "(", "self", ",", "commit", "=", "True", ")", ":", "# set the localised fields", "for", "localized_field", "in", "self", ".", "instance", ".", "localized_fields", ":", "setattr", "(", "self", ".", "instance", ",", "localized_field", ",", "self",...	38.888889	0.00838
def get(self, schema, query=None, kwargs): """ get matching rows from the db matching filters set in query schema -- Schema() query -- Query() return -- list -- a list of matching dicts """ ret = self._get_query(self._get, schema, query, kwargs) if n...	[ "def", "get", "(", "self", ",", "schema", ",", "query", "=", "None", ",", "", "", "kwargs", ")", ":", "ret", "=", "self", ".", "_get_query", "(", "self", ".", "_get", ",", "schema", ",", "query", ",", "", "", "kwargs", ")", "if", "not", "re...	28.666667	0.008451
def simulation_smoother(self,beta): """ Koopman's simulation smoother - simulates from states given model latent variables and observations Parameters ---------- beta : np.array Contains untransformed starting values for latent variables Returns ---...	[ "def", "simulation_smoother", "(", "self", ",", "beta", ")", ":", "T", ",", "Z", ",", "R", ",", "Q", ",", "H", "=", "self", ".", "_ss_matrices", "(", "beta", ")", "# Generate e_t+ and n_t+", "rnd_h", "=", "np", ".", "random", ".", "normal", "(", "0",...	33.780488	0.017544
def InspectZipFile(self, parser_mediator, zip_file): """Parses an OXML file-like object. Args: parser_mediator (ParserMediator): mediates interactions between parsers and other components, such as storage and dfvfs. zip_file (zipfile.ZipFile): the zip file containing OXML content. It is ...	[ "def", "InspectZipFile", "(", "self", ",", "parser_mediator", ",", "zip_file", ")", ":", "try", ":", "xml_data", "=", "zip_file", ".", "read", "(", "'_rels/.rels'", ")", "property_files", "=", "self", ".", "_ParseRelationshipsXMLFile", "(", "xml_data", ")", "e...	44.764045	0.001965
def create_get_property_request_content(option): """Creates an XML for requesting of getting a property value of remote WebDAV resource. :param option: the property attributes as dictionary with following keys: `namespace`: (optional) the namespace for XML property which will be ...	[ "def", "create_get_property_request_content", "(", "option", ")", ":", "root", "=", "etree", ".", "Element", "(", "'propfind'", ",", "xmlns", "=", "'DAV:'", ")", "prop", "=", "etree", ".", "SubElement", "(", "root", ",", "'prop'", ")", "etree", ".", "SubEl...	56.076923	0.008097
def select(self, key, where=None, start=None, stop=None, columns=None, iterator=False, chunksize=None, auto_close=False, **kwargs): """ Retrieve pandas object stored in file, optionally based on where criteria Parameters ---------- key : object whe...	[ "def", "select", "(", "self", ",", "key", ",", "where", "=", "None", ",", "start", "=", "None", ",", "stop", "=", "None", ",", "columns", "=", "None", ",", "iterator", "=", "False", ",", "chunksize", "=", "None", ",", "auto_close", "=", "False", ",...	37.977273	0.00175
def lease(self, ttl, lease_id=None): """ Create a new lease. All keys attached to this lease will be expired and deleted if the lease expires. A lease can be sent keep alive messages to refresh the ttl. :param ttl: Requested time to live :param lease_id: Request...	[ "def", "lease", "(", "self", ",", "ttl", ",", "lease_id", "=", "None", ")", ":", "lease_grant_request", "=", "etcdrpc", ".", "LeaseGrantRequest", "(", "TTL", "=", "ttl", ",", "ID", "=", "lease_id", ")", "lease_grant_response", "=", "self", ".", "leasestub"...	35.083333	0.002312
def fetchEntries(self): """GETs the corresponding chart data from Billboard.com, then parses the data using BeautifulSoup. """ if not self.date: # Fetch latest chart url = 'http://www.billboard.com/charts/%s' % (self.name) else: url = 'http://w...	[ "def", "fetchEntries", "(", "self", ")", ":", "if", "not", "self", ".", "date", ":", "# Fetch latest chart", "url", "=", "'http://www.billboard.com/charts/%s'", "%", "(", "self", ".", "name", ")", "else", ":", "url", "=", "'http://www.billboard.com/charts/%s/%s'",...	40.217949	0.002489
def calculateOptionPrice(self, reqId, contract, volatility, underPrice): """calculateOptionPrice(EClient self, TickerId reqId, Contract contract, double volatility, double underPrice)""" return _swigibpy.EClient_calculateOptionPrice(self, reqId, contract, volatility, underPrice)	[ "def", "calculateOptionPrice", "(", "self", ",", "reqId", ",", "contract", ",", "volatility", ",", "underPrice", ")", ":", "return", "_swigibpy", ".", "EClient_calculateOptionPrice", "(", "self", ",", "reqId", ",", "contract", ",", "volatility", ",", "underPrice...	97.666667	0.013559
def read_paraphrase_file(filename): ''' Reads in a GermaNet wiktionary paraphrase file and returns its contents as a list of dictionary structures. Arguments: - `filename`: ''' with open(filename, 'rb') as input_file: doc = etree.parse(input_file) assert doc.getroot().tag == 'w...	[ "def", "read_paraphrase_file", "(", "filename", ")", ":", "with", "open", "(", "filename", ",", "'rb'", ")", "as", "input_file", ":", "doc", "=", "etree", ".", "parse", "(", "input_file", ")", "assert", "doc", ".", "getroot", "(", ")", ".", "tag", "=="...	40.131579	0.00064
def get_all_accounts(self): """iterates through trie to and yields non-blank leafs as accounts.""" for address_hash, rlpdata in self.secure_trie.trie.iter_branch(): if rlpdata != trie.BLANK_NODE: yield rlp.decode(rlpdata, Account, db=self.db, addr=address_hash)	[ "def", "get_all_accounts", "(", "self", ")", ":", "for", "address_hash", ",", "rlpdata", "in", "self", ".", "secure_trie", ".", "trie", ".", "iter_branch", "(", ")", ":", "if", "rlpdata", "!=", "trie", ".", "BLANK_NODE", ":", "yield", "rlp", ".", "decode...	60.2	0.009836
def check_user(user): ''' Check user and assign process uid/gid. ''' if salt.utils.platform.is_windows(): return True if user == salt.utils.user.get_user(): return True import pwd # after confirming not running Windows try: pwuser = pwd.getpwnam(user) try: ...	[ "def", "check_user", "(", "user", ")", ":", "if", "salt", ".", "utils", ".", "platform", ".", "is_windows", "(", ")", ":", "return", "True", "if", "user", "==", "salt", ".", "utils", ".", "user", ".", "get_user", "(", ")", ":", "return", "True", "i...	34.319149	0.001808
def get_var_arr(self): ''' getter ''' if isinstance(self.__var_arr, np.ndarray): return self.__var_arr else: raise TypeError()	[ "def", "get_var_arr", "(", "self", ")", ":", "if", "isinstance", "(", "self", ".", "__var_arr", ",", "np", ".", "ndarray", ")", ":", "return", "self", ".", "__var_arr", "else", ":", "raise", "TypeError", "(", ")" ]	28.166667	0.011494
def delete(filepath): """ Delete the given file, directory or link. It Should support undelete later on. Args: filepath (str): Absolute full path to a file. e.g. /path/to/file """ # Some files have ACLs, let's remove them recursively remove_acl(filepath) # Some files have immu...	[ "def", "delete", "(", "filepath", ")", ":", "# Some files have ACLs, let's remove them recursively", "remove_acl", "(", "filepath", ")", "# Some files have immutable attributes, let's remove them recursively", "remove_immutable_attribute", "(", "filepath", ")", "# Finally remove the ...	29.4	0.001647
def interm_fluent_ordering(self) -> List[str]: '''The list of intermediate-fluent names in canonical order. Returns: List[str]: A list of fluent names. ''' interm_fluents = self.intermediate_fluents.values() key = lambda pvar: (pvar.level, pvar.name) return [...	[ "def", "interm_fluent_ordering", "(", "self", ")", "->", "List", "[", "str", "]", ":", "interm_fluents", "=", "self", ".", "intermediate_fluents", ".", "values", "(", ")", "key", "=", "lambda", "pvar", ":", "(", "pvar", ".", "level", ",", "pvar", ".", ...	40.666667	0.008021
def generate(self, api): """Generates a file that lists each namespace.""" with self.output_to_relative_path('ex1.out'): for namespace in api.namespaces.values(): self.emit(namespace.name)	[ "def", "generate", "(", "self", ",", "api", ")", ":", "with", "self", ".", "output_to_relative_path", "(", "'ex1.out'", ")", ":", "for", "namespace", "in", "api", ".", "namespaces", ".", "values", "(", ")", ":", "self", ".", "emit", "(", "namespace", "...	45.6	0.008621
def authenticate(realm, authid, details): """ application_name : name of your application version : version of your application required_components dictionary of components required for you application and their version required { "component" : "1.1", "component2" : "0...	[ "def", "authenticate", "(", "realm", ",", "authid", ",", "details", ")", ":", "global", "_start", "global", "_waiting", "import", "json", "ticket", "=", "json", ".", "loads", "(", "details", "[", "'ticket'", "]", ")", "if", "'application_name'", "not", "in...	37.44898	0.001062
async def send(self, request: Request[HTTPRequestType], **config: Any) -> Response[HTTPRequestType, AsyncHTTPResponseType]: """Send the request using this HTTP sender. """ pass	[ "async", "def", "send", "(", "self", ",", "request", ":", "Request", "[", "HTTPRequestType", "]", ",", "", "", "config", ":", "Any", ")", "->", "Response", "[", "HTTPRequestType", ",", "AsyncHTTPResponseType", "]", ":", "pass" ]	49.25	0.015
def image_list(self, name=None): ''' List server images ''' nt_ks = self.compute_conn ret = {} for image in nt_ks.images.list(): links = {} for link in image.links: links[link['rel']] = link['href'] ret[image.name] = { ...	[ "def", "image_list", "(", "self", ",", "name", "=", "None", ")", ":", "nt_ks", "=", "self", ".", "compute_conn", "ret", "=", "{", "}", "for", "image", "in", "nt_ks", ".", "images", ".", "list", "(", ")", ":", "links", "=", "{", "}", "for", "link"...	32.962963	0.002183
def dosdate(dosdate, dostime): """ `dosdate`: 2 bytes, little endian. `dostime`: 2 bytes, little endian. returns: datetime.datetime or datetime.datetime.min on error """ try: t = ord(dosdate[1]) << 8 t \|= ord(dosdate[0]) day = t & 0b0000000000011111 month = (t ...	[ "def", "dosdate", "(", "dosdate", ",", "dostime", ")", ":", "try", ":", "t", "=", "ord", "(", "dosdate", "[", "1", "]", ")", "<<", "8", "t", "\|=", "ord", "(", "dosdate", "[", "0", "]", ")", "day", "=", "t", "&", "0b0000000000011111", "month", "...	29.75	0.013569
def qual_name(self) -> QualName: """Return the receiver's qualified name.""" p, s, loc = self._key.partition(":") return (loc, p) if s else (p, self.namespace)	[ "def", "qual_name", "(", "self", ")", "->", "QualName", ":", "p", ",", "s", ",", "loc", "=", "self", ".", "_key", ".", "partition", "(", "\":\"", ")", "return", "(", "loc", ",", "p", ")", "if", "s", "else", "(", "p", ",", "self", ".", "namespac...	45	0.010929
def data(self, data=None, ret_r=False): '''response data''' if data or ret_r: self._data = data return self return self._data	[ "def", "data", "(", "self", ",", "data", "=", "None", ",", "ret_r", "=", "False", ")", ":", "if", "data", "or", "ret_r", ":", "self", ".", "_data", "=", "data", "return", "self", "return", "self", ".", "_data" ]	28	0.011561
def _onLog(self, mqttc, obj, level, string): """ Called when the client has log information. See [paho.mqtt.python#on_log](https://github.com/eclipse/paho.mqtt.python#on_log) for more information # Parameters mqttc (paho.mqtt.client.Client): The client instanc...	[ "def", "_onLog", "(", "self", ",", "mqttc", ",", "obj", ",", "level", ",", "string", ")", ":", "self", ".", "logger", ".", "debug", "(", "\"%d %s\"", "%", "(", "level", ",", "string", ")", ")" ]	46.733333	0.015385
def setAllColor(self, color): """ Command: 0x06 sets all colors in the array Data: [Command][r][g][b] """ header = bytearray() header.append(LightProtocolCommand.SetAllColor) light = bytearray() light.extend(color) buff = header + light return self.send(buff)	[ "def", "setAllColor", "(", "self", ",", "color", ")", ":", "header", "=", "bytearray", "(", ")", "header", ".", "append", "(", "LightProtocolCommand", ".", "SetAllColor", ")", "light", "=", "bytearray", "(", ")", "light", ".", "extend", "(", "color", ")"...	15.055556	0.048611
def view_meta_admonition(admonition_name, name=None): """List all found admonition from all the rst files found in directory. view_meta_admonition is called by the 'meta' url: /__XXXXXXX__ where XXXXXXX represents and admonition name, like: * todo * warning * danger * ... .. note:: th...	[ "def", "view_meta_admonition", "(", "admonition_name", ",", "name", "=", "None", ")", ":", "print", "(", "\"meta admo: %s - %s\"", "%", "(", "admonition_name", ",", "name", ")", ")", "admonition", "=", "None", "if", "admonition_name", "==", "'todo'", ":", "adm...	37.459016	0.000213
def _record(self, ext_loc, parent_dir_num): # type: (int, int) -> bytes ''' An internal method to generate a string representing this Path Table Record. Parameters: ext_loc - The extent location to place in this Path Table Record. parent_dir_num - The parent directory ...	[ "def", "_record", "(", "self", ",", "ext_loc", ",", "parent_dir_num", ")", ":", "# type: (int, int) -> bytes", "return", "struct", ".", "pack", "(", "self", ".", "FMT", ",", "self", ".", "len_di", ",", "self", ".", "xattr_length", ",", "ext_loc", ",", "par...	45.571429	0.009217
def load_calls(self, call_type='jsonrpc'): """Loads the KvasirAPI calls into API.call based on the call_type variable. Utilizes the `Calls` class to establish an attribute-based access method. For instance a configuration with an instance called 'internal' will create an API.call that can be use...	[ "def", "load_calls", "(", "self", ",", "call_type", "=", "'jsonrpc'", ")", ":", "valid", "=", "False", "if", "call_type", "==", "'jsonrpc'", ":", "#from jsonrpc import Hosts, Services, Accounts, Vulns, OS, NetBIOS, Evidence", "import", "jsonrpc", "as", "api_calls", "sel...	64.264706	0.009017
def calcChebyshev(coeffs, validDomain, freqs): """ Given a set of coefficients, this method evaluates a Chebyshev approximation. Used for CASA bandpass reading. input coeffs and freqs are numpy arrays """ logger = logging.getLogger(__name__) domain = (validDomain[1] - validDomain[0])[0...	[ "def", "calcChebyshev", "(", "coeffs", ",", "validDomain", ",", "freqs", ")", ":", "logger", "=", "logging", ".", "getLogger", "(", "__name__", ")", "domain", "=", "(", "validDomain", "[", "1", "]", "-", "validDomain", "[", "0", "]", ")", "[", "0", "...	39	0.014728
def infer_dtype_from_object(dtype): """ Get a numpy dtype.type-style object for a dtype object. This methods also includes handling of the datetime64[ns] and datetime64[ns, TZ] objects. If no dtype can be found, we return ``object``. Parameters ---------- dtype : dtype, type T...	[ "def", "infer_dtype_from_object", "(", "dtype", ")", ":", "if", "isinstance", "(", "dtype", ",", "type", ")", "and", "issubclass", "(", "dtype", ",", "np", ".", "generic", ")", ":", "# Type object from a dtype", "return", "dtype", "elif", "isinstance", "(", ...	29.064516	0.000537
def fixcode(**kwargs): """ auto pep8 format all python file in ``source code`` and ``tests`` dir. """ # repository direcotry repo_dir = Path(__file__).parent.absolute() # source code directory source_dir = Path(repo_dir, package.__name__) if source_dir.exists(): print("Source c...	[ "def", "fixcode", "(", "", "", "kwargs", ")", ":", "# repository direcotry", "repo_dir", "=", "Path", "(", "__file__", ")", ".", "parent", ".", "absolute", "(", ")", "# source code directory", "source_dir", "=", "Path", "(", "repo_dir", ",", "package", "."...	30.148148	0.00119
def compute_discounts(self, precision=None): ''' Returns the total amount of discounts of this group. @param precision:int Total amount of discounts @return: Decimal ''' return sum([line.compute_discounts(precision) for line in self.__lines])	[ "def", "compute_discounts", "(", "self", ",", "precision", "=", "None", ")", ":", "return", "sum", "(", "[", "line", ".", "compute_discounts", "(", "precision", ")", "for", "line", "in", "self", ".", "__lines", "]", ")" ]	40.571429	0.010345
def reuse(context, block_list, **kwargs): ''' Allow reuse of a block within a template. {% reuse '_myblock' foo=bar %} If passed a list of block names, will use the first that matches: {% reuse list_of_block_names .... %} ''' try: block_context = context.render_context[BLOCK_CONTE...	[ "def", "reuse", "(", "context", ",", "block_list", ",", "", "", "kwargs", ")", ":", "try", ":", "block_context", "=", "context", ".", "render_context", "[", "BLOCK_CONTEXT_KEY", "]", "except", "KeyError", ":", "block_context", "=", "BlockContext", "(", ")"...	24.296296	0.001466
def compute_search_efficiency_in_bins( found, total, ndbins, sim_to_bins_function=lambda sim: (sim.distance,)): """ Calculate search efficiency in the given ndbins. The first dimension of ndbins must be bins over injected distance. sim_to_bins_function must map an object to a tuple in...	[ "def", "compute_search_efficiency_in_bins", "(", "found", ",", "total", ",", "ndbins", ",", "sim_to_bins_function", "=", "lambda", "sim", ":", "(", "sim", ".", "distance", ",", ")", ")", ":", "bins", "=", "bin_utils", ".", "BinnedRatios", "(", "ndbins", ")",...	38.076923	0.000985
def _process_data(self, dd, offsets, data): # type: (Downloader, blobxfer.models.download.Descriptor, # blobxfer.models.download.Offsets, bytes) -> None """Process downloaded data for disk :param Downloader self: this :param blobxfer.models.download.Descriptor dd: download...	[ "def", "_process_data", "(", "self", ",", "dd", ",", "offsets", ",", "data", ")", ":", "# type: (Downloader, blobxfer.models.download.Descriptor,", "# blobxfer.models.download.Offsets, bytes) -> None", "# decrypt if necessary", "if", "dd", ".", "entity", ".", "is_encry...	44.369565	0.001918
def _render_full_resource(self, instance, include, fields): """ Generate a representation of a full resource to match JSON API spec. :param instance: The instance to serialize :param include: Dictionary of relationships to include :param fields: Dictionary of fields to filter ...	[ "def", "_render_full_resource", "(", "self", ",", "instance", ",", "include", ",", "fields", ")", ":", "api_type", "=", "instance", ".", "__jsonapi_type__", "orm_desc_keys", "=", "instance", ".", "__mapper__", ".", "all_orm_descriptors", ".", "keys", "(", ")", ...	41.058252	0.000462
def addvlan(self, vlanid, vlan_name): """ Function operates on the IMCDev object. Takes input of vlanid (1-4094), str of vlan_name, auth and url to execute the create_dev_vlan method on the IMCDev object. Device must be supported in the HPE IMC Platform VLAN Manager module. :para...	[ "def", "addvlan", "(", "self", ",", "vlanid", ",", "vlan_name", ")", ":", "create_dev_vlan", "(", "vlanid", ",", "vlan_name", ",", "self", ".", "auth", ",", "self", ".", "url", ",", "devid", "=", "self", ".", "devid", ")" ]	50.8	0.015474
def connect(url): """Connect to UNIX or TCP socket. url can be either tcp://<host>:port or ipc://<path> """ url = urlparse(url) if url.scheme == 'tcp': sock = socket() netloc = tuple(url.netloc.rsplit(':', 1)) hostname = socket.gethostname() elif url.scheme == 'ipc':...	[ "def", "connect", "(", "url", ")", ":", "url", "=", "urlparse", "(", "url", ")", "if", "url", ".", "scheme", "==", "'tcp'", ":", "sock", "=", "socket", "(", ")", "netloc", "=", "tuple", "(", "url", ".", "netloc", ".", "rsplit", "(", "':'", ",", ...	27.210526	0.001869
def _create_table_setup(self): """ Return a list of SQL statements that creates a table reflecting the structure of a DataFrame. The first entry will be a CREATE TABLE statement while the rest will be CREATE INDEX statements. """ column_names_and_types = self._get_column...	[ "def", "_create_table_setup", "(", "self", ")", ":", "column_names_and_types", "=", "self", ".", "_get_column_names_and_types", "(", "self", ".", "_sql_type_name", ")", "pat", "=", "re", ".", "compile", "(", "r'\\s+'", ")", "column_names", "=", "[", "col_name", ...	39.883721	0.001138
def multipart_uploadpart(self, multipart): """Upload a part. :param multipart: A :class:`invenio_files_rest.models.MultipartObject` instance. :returns: A Flask response. """ content_length, part_number, stream, content_type, content_md5, tags =\ current_f...	[ "def", "multipart_uploadpart", "(", "self", ",", "multipart", ")", ":", "content_length", ",", "part_number", ",", "stream", ",", "content_type", ",", "content_md5", ",", "tags", "=", "current_files_rest", ".", "multipart_partfactory", "(", ")", "if", "content_len...	32.621622	0.001609
def dragMoveEvent( self, event ): """ Processes the drag drop event using the filter set by the \ setDragDropFilter :param event \| <QDragEvent> """ filt = self.dragDropFilter() if not filt: super(XTreeWidget, self).dragMoveEvent(...	[ "def", "dragMoveEvent", "(", "self", ",", "event", ")", ":", "filt", "=", "self", ".", "dragDropFilter", "(", ")", "if", "not", "filt", ":", "super", "(", "XTreeWidget", ",", "self", ")", ".", "dragMoveEvent", "(", "event", ")", "return", "filt", "(", ...	28.538462	0.018277
def create_default_layout(config): """ Banana banana """ project_name = config.get('project_name') project_version = config.get('project_version') if not project_name or not project_version: error('setup-issue', '--project-name and --project-version must be specified') ...	[ "def", "create_default_layout", "(", "config", ")", ":", "project_name", "=", "config", ".", "get", "(", "'project_name'", ")", "project_version", "=", "config", ".", "get", "(", "'project_version'", ")", "if", "not", "project_name", "or", "not", "project_versio...	36.72549	0.00104
def get_content(api, rebuild_cache=False): """get content from server or cache""" if hasattr(get_content, 'cache') and not rebuild_cache: return get_content.cache if not os.path.exists(CONTENT_JSON) or rebuild_cache: import locale content_endpoint = api.content.get # pylint: ...	[ "def", "get_content", "(", "api", ",", "rebuild_cache", "=", "False", ")", ":", "if", "hasattr", "(", "get_content", ",", "'cache'", ")", "and", "not", "rebuild_cache", ":", "return", "get_content", ".", "cache", "if", "not", "os", ".", "path", ".", "exi...	35.384615	0.000705
def query(query, ts, *kwargs): """ Perform query* on the testsuite ts. Note: currently only 'select' queries are supported. Args: query (str): TSQL query string ts (:class:`delphin.itsdb.TestSuite`): testsuite to query over kwargs: keyword arguments passed to the more speci...	[ "def", "query", "(", "query", ",", "ts", ",", "", "", "kwargs", ")", ":", "queryobj", "=", "_parse_query", "(", "query", ")", "if", "queryobj", "[", "'querytype'", "]", "in", "(", "'select'", ",", "'retrieve'", ")", ":", "return", "_select", "(", "...	34.033333	0.000952
def define_threshold(dat, s_freq, method, value, nbins=120): """Return the value of the threshold based on relative values. Parameters ---------- dat : ndarray (dtype='float') vector with the data after selection-transformation s_freq : float sampling frequency method : str ...	[ "def", "define_threshold", "(", "dat", ",", "s_freq", ",", "method", ",", "value", ",", "nbins", "=", "120", ")", ":", "if", "method", "==", "'mean'", ":", "value", "=", "value", "*", "mean", "(", "dat", ")", "elif", "method", "==", "'median'", ":", ...	29.076923	0.000853
def rebuild(args): """ %prog rebuild blocksfile blastfile Rebuild anchors file from pre-built blocks file. """ p = OptionParser(rebuild.__doc__) p.add_option("--header", default=False, action="store_true", help="First line is header [default: %default]") p.add_option("--wri...	[ "def", "rebuild", "(", "args", ")", ":", "p", "=", "OptionParser", "(", "rebuild", ".", "__doc__", ")", "p", ".", "add_option", "(", "\"--header\"", ",", "default", "=", "False", ",", "action", "=", "\"store_true\"", ",", "help", "=", "\"First line is head...	30.34375	0.001996
def histogram2d(x, y, bins, range, weights=None): """ Compute a 2D histogram assuming equally spaced bins. Parameters ---------- x, y : `~numpy.ndarray` The position of the points to bin in the 2D histogram bins : int or iterable The number of bins in each dimension. If given as...	[ "def", "histogram2d", "(", "x", ",", "y", ",", "bins", ",", "range", ",", "weights", "=", "None", ")", ":", "if", "isinstance", "(", "bins", ",", "numbers", ".", "Integral", ")", ":", "nx", "=", "ny", "=", "bins", "else", ":", "nx", ",", "ny", ...	28.459016	0.001114
def private_props(obj): """ Yield private properties of an object. A private property is defined as one that has a single underscore (:code:`_`) before its name :param obj: Object :type obj: object :returns: iterator """ # Get private properties but NOT magic methods props = ...	[ "def", "private_props", "(", "obj", ")", ":", "# Get private properties but NOT magic methods", "props", "=", "[", "item", "for", "item", "in", "dir", "(", "obj", ")", "]", "priv_props", "=", "[", "_PRIVATE_PROP_REGEXP", ".", "match", "(", "item", ")", "for", ...	32.315789	0.001582
def get_all(self, endpoint, params=None): # pylint: disable=too-many-locals """ Get all items in the specified endpoint of alignak backend If an error occurs, a BackendException is raised. If the max_results parameter is not specified in parameters, it is set to BACKEND...	[ "def", "get_all", "(", "self", ",", "endpoint", ",", "params", "=", "None", ")", ":", "# pylint: disable=too-many-locals", "# Set max results at maximum value supported by the backend to limit requests number", "if", "not", "params", ":", "params", "=", "{", "'max_results'"...	35.807339	0.002493
def _operator_handling(self, cursor): """Returns a string with the literal that are part of the operation.""" values = self._literal_handling(cursor) retval = ''.join([str(val) for val in values]) return retval	[ "def", "_operator_handling", "(", "self", ",", "cursor", ")", ":", "values", "=", "self", ".", "_literal_handling", "(", "cursor", ")", "retval", "=", "''", ".", "join", "(", "[", "str", "(", "val", ")", "for", "val", "in", "values", "]", ")", "retur...	47.6	0.008264
def decode_network(objects): """Return root object from ref-containing obj table entries""" def resolve_ref(obj, objects=objects): if isinstance(obj, Ref): # first entry is 1 return objects[obj.index - 1] else: return obj # Reading the ObjTable backwards ...	[ "def", "decode_network", "(", "objects", ")", ":", "def", "resolve_ref", "(", "obj", ",", "objects", "=", "objects", ")", ":", "if", "isinstance", "(", "obj", ",", "Ref", ")", ":", "# first entry is 1", "return", "objects", "[", "obj", ".", "index", "-",...	29.520833	0.000683
def get_jids(self): """Return JIDs for which this certificate is valid (except the domain wildcards). :Returtype: `list` of `JID` """ result = [] if ("XmppAddr" in self.alt_names or "DNS" in self.alt_names or "SRVName" in self....	[ "def", "get_jids", "(", "self", ")", ":", "result", "=", "[", "]", "if", "(", "\"XmppAddr\"", "in", "self", ".", "alt_names", "or", "\"DNS\"", "in", "self", ".", "alt_names", "or", "\"SRVName\"", "in", "self", ".", "alt_names", ")", ":", "addrs", "=", ...	42.969697	0.008276
def is_associated_file(self): # type: () -> bool ''' A method to determine whether this file is 'associated' with another file on the ISO. Parameters: None. Returns: True if this file is associated with another file on the ISO, False otherwise....	[ "def", "is_associated_file", "(", "self", ")", ":", "# type: () -> bool", "if", "not", "self", ".", "_initialized", ":", "raise", "pycdlibexception", ".", "PyCdlibInternalError", "(", "'Directory Record not yet initialized'", ")", "return", "self", ".", "file_flags", ...	32.6875	0.009294
def get_dashboard(self, id, **kwargs): # noqa: E501 """Get a specific dashboard # noqa: E501 # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True >>> thread = api.get_dashboard(id, async_req=Tr...	[ "def", "get_dashboard", "(", "self", ",", "id", ",", "", "", "kwargs", ")", ":", "# noqa: E501", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'async_req'", ")", ":", "return", "self", ".", "get_dashboard_...	40.285714	0.002309
def read_bitpacked(file_obj, header, width, debug_logging): """Read a bitpacked run of the rle/bitpack hybrid. Supports width >8 (crossing bytes). """ num_groups = header >> 1 count = num_groups * 8 byte_count = (width * count) // 8 if debug_logging: logger.debug("Reading a bit-pack...	[ "def", "read_bitpacked", "(", "file_obj", ",", "header", ",", "width", ",", "debug_logging", ")", ":", "num_groups", "=", "header", ">>", "1", "count", "=", "num_groups", "", "8", "byte_count", "=", "(", "width", "", "count", ")", "//", "8", "if", "d...	36.785714	0.001892
def _get_chain_parent_symbol(self, symbol, fullsymbol): """Gets the code element object for the parent of the specified symbol in the fullsymbol chain.""" #We are only interested in the type of the variable immediately preceding our symbol #in the chain so we can list its members. ...	[ "def", "_get_chain_parent_symbol", "(", "self", ",", "symbol", ",", "fullsymbol", ")", ":", "#We are only interested in the type of the variable immediately preceding our symbol", "#in the chain so we can list its members.", "chain", "=", "fullsymbol", ".", "split", "(", "\"%\"",...	46	0.012777
def _get_ntgpadnt(self, ver, add_ns): """Create a namedtuple object for each annotation""" hdrs = self.gpad_columns[ver] if add_ns: hdrs = hdrs + ['NS'] return cx.namedtuple("ntgpadobj", hdrs)	[ "def", "_get_ntgpadnt", "(", "self", ",", "ver", ",", "add_ns", ")", ":", "hdrs", "=", "self", ".", "gpad_columns", "[", "ver", "]", "if", "add_ns", ":", "hdrs", "=", "hdrs", "+", "[", "'NS'", "]", "return", "cx", ".", "namedtuple", "(", "\"ntgpadobj...	38.5	0.008475
def initialize(): """ Method to parse and check configurations of FORD, get the project's global documentation, and create the Markdown reader. """ try: import multiprocessing ncpus = '{0}'.format(multiprocessing.cpu_count()) except (ImportError, NotImplementedError): nc...	[ "def", "initialize", "(", ")", ":", "try", ":", "import", "multiprocessing", "ncpus", "=", "'{0}'", ".", "format", "(", "multiprocessing", ".", "cpu_count", "(", ")", ")", "except", "(", "ImportError", ",", "NotImplementedError", ")", ":", "ncpus", "=", "'...	51.866935	0.012967
def convert_avgpool(params, w_name, scope_name, inputs, layers, weights, names): """ Convert Average pooling. Args: params: dictionary with layer parameters w_name: name prefix in state_dict scope_name: pytorch scope name inputs: pytorch node inputs layers: dictionar...	[ "def", "convert_avgpool", "(", "params", ",", "w_name", ",", "scope_name", ",", "inputs", ",", "layers", ",", "weights", ",", "names", ")", ":", "print", "(", "'Converting pooling ...'", ")", "if", "names", "==", "'short'", ":", "tf_name", "=", "'P'", "+",...	28.984127	0.001589
def getSource(self, sourceKey, sourceTime=None): """ GetReturn a date/time tuple based on the giving source key and the corresponding key found in self.re_sources. The current time is used as the default and any specified item found in self.re_sources is inserted into the value ...	[ "def", "getSource", "(", "self", ",", "sourceKey", ",", "sourceTime", "=", "None", ")", ":", "if", "sourceKey", "not", "in", "self", ".", "re_sources", ":", "return", "None", "if", "sourceTime", "is", "None", ":", "(", "yr", ",", "mth", ",", "dy", ",...	34.2	0.001896
def resolve_indices(self, index, start_val): """Get indices for the skeleton from the channels when loading in channel data.""" channels = self.vertices[index].meta['channels'] base_channel = start_val rot_ind = -np.ones(3, dtype=int) pos_ind = -np.ones(3, dtype=int) fo...	[ "def", "resolve_indices", "(", "self", ",", "index", ",", "start_val", ")", ":", "channels", "=", "self", ".", "vertices", "[", "index", "]", ".", "meta", "[", "'channels'", "]", "base_channel", "=", "start_val", "rot_ind", "=", "-", "np", ".", "ones", ...	44.636364	0.00997
def values(self): """ Returns the values for this axis. :return [<variant>, ..] """ if self._values is None: self._values = self.calculateValues() return self._values	[ "def", "values", "(", "self", ")", ":", "if", "self", ".", "_values", "is", "None", ":", "self", ".", "_values", "=", "self", ".", "calculateValues", "(", ")", "return", "self", ".", "_values" ]	26.555556	0.012146
def get_nnsoap(obj, first_shell, alphas, betas, rcut=6, nmax=10, lmax=9, all_atomtypes=[]): """Takes cluster structure and nearest neighbour information of a datapoint, Returns concatenated soap vectors for each nearest neighbour (up to 3). Top, bridge, hollow fill the initial zero soap vector from left...	[ "def", "get_nnsoap", "(", "obj", ",", "first_shell", ",", "alphas", ",", "betas", ",", "rcut", "=", "6", ",", "nmax", "=", "10", ",", "lmax", "=", "9", ",", "all_atomtypes", "=", "[", "]", ")", ":", "soap_vector", "=", "[", "]", "nnn", "=", "len"...	43.038462	0.011364
def from_music_service(cls, music_service, content_dict): """Return an element instantiated from the information that a music service has (alternative constructor) Args: music_service (MusicService): The music service that content_dict originated from con...	[ "def", "from_music_service", "(", "cls", ",", "music_service", ",", "content_dict", ")", ":", "# Form the item_id", "quoted_id", "=", "quote_url", "(", "content_dict", "[", "'id'", "]", ".", "encode", "(", "'utf-8'", ")", ")", "# The hex prefix remains a mistery for...	42.32	0.001848
def reload_(name): ''' Reload the named service CLI Example: .. code-block:: bash salt '*' service.reload <service name> ''' cmd = '/usr/sbin/svcadm refresh {0}'.format(name) if not __salt__['cmd.retcode'](cmd, python_shell=False): # calling reload doesn't clear maintenanc...	[ "def", "reload_", "(", "name", ")", ":", "cmd", "=", "'/usr/sbin/svcadm refresh {0}'", ".", "format", "(", "name", ")", "if", "not", "__salt__", "[", "'cmd.retcode'", "]", "(", "cmd", ",", "python_shell", "=", "False", ")", ":", "# calling reload doesn't clear...	25.8125	0.002336
def log_start_finish(msg, logger, level=logging.DEBUG): """ A context manager to log messages with "start: " and "finish: " prefixes before and after a block. Parameters ---------- msg : str Will be prefixed with "start: " and "finish: ". logger : logging.Logger level : int, opt...	[ "def", "log_start_finish", "(", "msg", ",", "logger", ",", "level", "=", "logging", ".", "DEBUG", ")", ":", "logger", ".", "log", "(", "level", ",", "'start: '", "+", "msg", ")", "yield", "logger", ".", "log", "(", "level", ",", "'finish: '", "+", "m...	27.294118	0.002083
def create_script_acl(self, id_vlan, network_type): '''Generate the script acl :param id_vlan: Vlan Id :param network_type: v4 or v6 :raise InvalidValueError: Attrs invalids. :raise XMLError: Networkapi failed to generate the XML response. :raise VlanACLDuplicatedError:...	[ "def", "create_script_acl", "(", "self", ",", "id_vlan", ",", "network_type", ")", ":", "vlan_map", "=", "dict", "(", ")", "vlan_map", "[", "'id_vlan'", "]", "=", "id_vlan", "vlan_map", "[", "'network_type'", "]", "=", "network_type", "url", "=", "'vlan/crea...	29.225	0.001656
def save(self, file=CONFIG_FILE): """ Save configuration to provided path as a yaml file """ os.makedirs(os.path.dirname(file), exist_ok=True) with open(file, "w") as f: yaml.dump(self._settings, f, Dumper=yaml.RoundTripDumper, width=float("inf"))	[ "def", "save", "(", "self", ",", "file", "=", "CONFIG_FILE", ")", ":", "os", ".", "makedirs", "(", "os", ".", "path", ".", "dirname", "(", "file", ")", ",", "exist_ok", "=", "True", ")", "with", "open", "(", "file", ",", "\"w\"", ")", "as", "f", ...	41.857143	0.010033
def rpc_fix_code(self, source, directory): """Formats Python code to conform to the PEP 8 style guide. """ source = get_source(source) return fix_code(source, directory)	[ "def", "rpc_fix_code", "(", "self", ",", "source", ",", "directory", ")", ":", "source", "=", "get_source", "(", "source", ")", "return", "fix_code", "(", "source", ",", "directory", ")" ]	32.833333	0.009901

def experimentVaryingSynapseSampling(expParams, sampleSizeDistalList, sampleSizeProximalList): """ Test multi-column convergence with varying amount of proximal/distal sampling :return: """ numRpts = 20 df = None args = [] for sa...

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def getchild(self, window_name, child_name='', role='', parent=''): """ Gets the list of object available in the window, which matches component name or role name or both. @param window_name: Window name to look for, either full name, LDTP's name convention, or a Unix glob. ...

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def getCmdParams(cmd, request, **fields): """Update or fill the fields parameters depending on command code. Both cmd and drAppId can be provided # noqa: E501 in string or int format.""" drCode = None params = None drAppId = None # Fetch the parameters if cmd is found in dict if isinstan...

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def _prepare_fabric_fw_internal(self, tenant_id, fw_dict, is_fw_virt, result): """Internal routine to prepare the fabric. This creates an entry in FW DB and runs the SM. """ if not self.auto_nwk_create: LOG.info("Auto network creation disa...

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def getJson(cls, url, method='GET', headers={}, data=None, socket=None, timeout=120): """Fetch a JSON result via HTTP """ if not 'Content-Type' in headers: headers['Content-Type'] = ['application/json'] body = yield cls().getBody(url, method, headers, data, socket, timeout) ...

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def prepareSiiImport(siiContainer, specfile, path, qcAttr, qcLargerBetter, qcCutoff, rankAttr, rankLargerBetter): """Prepares the ``siiContainer`` for the import of peptide spectrum matching results. Adds entries to ``siiContainer.container`` and to ``siiContainer.info``. :param si...

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def _render(item: ConfigItem, indent: str = "") -> str: """ Render a single config item, with the provided indent """ optional = item.default_value != _NO_DEFAULT if is_configurable(item.annotation): rendered_annotation = f"{item.annotation} (configurable)" else: rendered_annota...

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def from_networkx(cls, G, positions, nodes=None, **kwargs): """ Generate a HoloViews Graph from a networkx.Graph object and networkx layout function or dictionary of node positions. Any keyword arguments will be passed to the layout function. By default it will extract all node a...

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def verify(self, id): """Verify a custom domain Args: id (str): The id of the custom domain to delete See: https://auth0.com/docs/api/management/v2#!/Custom_Domains/post_verify """ url = self._url('%s/verify' % (id)) return self.client.post(url)

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def get_weichert_factor(beta, cmag, cyear, end_year): ''' Gets the Weichert adjustment factor for each the magnitude bins :param float beta: Beta value of Gutenberg & Richter parameter (b * log(10.)) :param np.ndarray cmag: Magnitude values of the completeness table :param np.ndar...

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def delete(self, item): """Deletes the specified item.""" uri = "/%s/%s" % (self.uri_base, utils.get_id(item)) return self._delete(uri)

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def filter_geoquiet(sat, maxKp=None, filterTime=None, kpData=None, kp_inst=None): """Filters pysat.Instrument data for given time after Kp drops below gate. Loads Kp data for the same timeframe covered by sat and sets sat.data to NaN for times when Kp > maxKp and for filterTime after Kp drops below max...

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def mark_as_nsfw(self, unmark_nsfw=False): """Mark as Not Safe For Work. Requires that the currently authenticated user is the author of the submission, has the modposts oauth scope or has user/password authentication as a mod of the subreddit. :returns: The json response from ...

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def is_treshold_reached(self, scraped_request): """Check if similar requests to the given requests have already been crawled X times. Where X is the minimum treshold amount from the options. Args: scraped_request (:class:`nyawc.http.Request`): The request that possibly reached the ...

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def heads(directory=None, verbose=False, resolve_dependencies=False): """Show current available heads in the script directory""" if alembic_version >= (0, 7, 0): config = current_app.extensions['migrate'].migrate.get_config( directory) command.heads(config, verbose=verbose, ...

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def stack_decoders(self, *layers): """ Stack decoding layers. """ self.stack(*layers) self.decoding_layers.extend(layers)

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def get_git_hash(from_url): """ Get the git commit hash of HEAD from :from_url. Args: from_url: The file system url of our git repository. Returns: git commit hash of HEAD, or empty string. """ from benchbuild.utils.cmd import git if from_url is None: return "" ...

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def exhaustive_fragment_check( self, ontology:pd.DataFrame, iri_curie_fragment_predicate:str = 'iri', cross_reference_iris:bool = False, cross_reference_fragments:bool = False, ...

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def add(self, key, value): """Add CLI Arg to lists value. Args: key (string): The CLI Args key (e.g., --name). value (string): The CLI Args value (e.g., bob). """ if isinstance(value, list): # TODO: support env vars in list w/masked values ...

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def explain(self, bindVars={}, allPlans = False) : """Returns an explanation of the query. Setting allPlans to True will result in ArangoDB returning all possible plans. False returns only the optimal plan""" return self.database.explainAQLQuery(self.query, bindVars, allPlans)

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def _handle_result_by_key_slice(self, key_slice): """ Handle processing when the result argument provided is a key slice. """ invalid_options = ('key', 'keys', 'startkey', 'endkey') if any(x in invalid_options for x in self.options): raise ResultException(102, invalid...

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def add_infos(self, *keyvals, **kwargs): """Adds the given info and returns a dict composed of just this added info.""" kv_pairs = [] for key, val in keyvals: key = key.strip() val = str(val).strip() if ':' in key: raise ValueError('info key "{}" must not contain a colon.'.format(k...

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def keyPressEvent(self, event): """Reimplement Qt method""" if event == QKeySequence.Copy: self.copy() else: QTableView.keyPressEvent(self, event)

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def write(self, s: str) -> None: """Add str to internal bytes buffer and if echo is True, echo contents to inner stream""" if not isinstance(s, str): raise TypeError('write() argument must be str, not {}'.format(type(s))) if not self.pause_storage: self.buffer.byte_buf +...

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def _create_simulated_annealing_expander(schedule): ''' Creates an expander that has a random chance to choose a node that is worse than the current (first) node, but that chance decreases with time. ''' def _expander(fringe, iteration, viewer): T = schedule(iteration) current = frin...

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def update_state(self): """ Update state with latest info from Wink API. """ response = self.api_interface.local_get_state(self, type_override="binary_switche") return self._update_state_from_response(response)

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def digest_secure_bootloader(args): """ Calculate the digest of a bootloader image, in the same way the hardware secure boot engine would do so. Can be used with a pre-loaded key to update a secure bootloader. """ if args.iv is not None: print("WARNING: --iv argument is for TESTING PURPOSES ONLY...

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def PCM_encode(x,N_bits): """ Parameters ---------- x : signal samples to be PCM encoded N_bits ; bit precision of PCM samples Returns ------- x_bits = encoded serial bit stream of 0/1 values. MSB first. Mark Wickert, Mark 2015 """ xq = np.int16(np.rint(x*2**(N_bits-1))) ...

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def _maybe_validate_distributions(distributions, dtype_override, validate_args): """Checks that `distributions` satisfies all assumptions.""" assertions = [] if not _is_iterable(distributions) or not distributions: raise ValueError('`distributions` must be a list of one or more ' 'distri...

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def make_full_ivar(): """ take the scatters and skylines and make final ivars """ # skylines come as an ivar # don't use them for now, because I don't really trust them... # skylines = np.load("%s/skylines.npz" %DATA_DIR)['arr_0'] ref_flux = np.load("%s/ref_flux_all.npz" %DATA_DIR)['arr_0'] re...

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def _call(self, x, out=None): """Extend ``x`` from the subspace.""" if out is None: out = self.range.zero() else: out.set_zero() out[self.index] = x return out

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def create_director(self, service_id, version_number, name, quorum=75, _type=FastlyDirectorType.RANDOM, retries=5, shield=None): """Create a director for a particular service and version.""" body = self._formdata({ "name": name, "quorum": quorum, "type": _type, "retries": retries, "shield...

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def save(self, commit=True): """ Override save method to also save the localised fields. """ # set the localised fields for localized_field in self.instance.localized_fields: setattr(self.instance, localized_field, self.cleaned_data[localized_field]) return s...

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def get(self, schema, query=None, **kwargs): """ get matching rows from the db matching filters set in query schema -- Schema() query -- Query() return -- list -- a list of matching dicts """ ret = self._get_query(self._get, schema, query, **kwargs) if n...

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def simulation_smoother(self,beta): """ Koopman's simulation smoother - simulates from states given model latent variables and observations Parameters ---------- beta : np.array Contains untransformed starting values for latent variables Returns ---...

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def InspectZipFile(self, parser_mediator, zip_file): """Parses an OXML file-like object. Args: parser_mediator (ParserMediator): mediates interactions between parsers and other components, such as storage and dfvfs. zip_file (zipfile.ZipFile): the zip file containing OXML content. It is ...

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def create_get_property_request_content(option): """Creates an XML for requesting of getting a property value of remote WebDAV resource. :param option: the property attributes as dictionary with following keys: `namespace`: (optional) the namespace for XML property which will be ...

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def select(self, key, where=None, start=None, stop=None, columns=None, iterator=False, chunksize=None, auto_close=False, **kwargs): """ Retrieve pandas object stored in file, optionally based on where criteria Parameters ---------- key : object whe...

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def lease(self, ttl, lease_id=None): """ Create a new lease. All keys attached to this lease will be expired and deleted if the lease expires. A lease can be sent keep alive messages to refresh the ttl. :param ttl: Requested time to live :param lease_id: Request...

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def fetchEntries(self): """GETs the corresponding chart data from Billboard.com, then parses the data using BeautifulSoup. """ if not self.date: # Fetch latest chart url = 'http://www.billboard.com/charts/%s' % (self.name) else: url = 'http://w...

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def calculateOptionPrice(self, reqId, contract, volatility, underPrice): """calculateOptionPrice(EClient self, TickerId reqId, Contract contract, double volatility, double underPrice)""" return _swigibpy.EClient_calculateOptionPrice(self, reqId, contract, volatility, underPrice)

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def read_paraphrase_file(filename): ''' Reads in a GermaNet wiktionary paraphrase file and returns its contents as a list of dictionary structures. Arguments: - `filename`: ''' with open(filename, 'rb') as input_file: doc = etree.parse(input_file) assert doc.getroot().tag == 'w...

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def get_all_accounts(self): """iterates through trie to and yields non-blank leafs as accounts.""" for address_hash, rlpdata in self.secure_trie.trie.iter_branch(): if rlpdata != trie.BLANK_NODE: yield rlp.decode(rlpdata, Account, db=self.db, addr=address_hash)

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def check_user(user): ''' Check user and assign process uid/gid. ''' if salt.utils.platform.is_windows(): return True if user == salt.utils.user.get_user(): return True import pwd # after confirming not running Windows try: pwuser = pwd.getpwnam(user) try: ...

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def get_var_arr(self): ''' getter ''' if isinstance(self.__var_arr, np.ndarray): return self.__var_arr else: raise TypeError()

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def delete(filepath): """ Delete the given file, directory or link. It Should support undelete later on. Args: filepath (str): Absolute full path to a file. e.g. /path/to/file """ # Some files have ACLs, let's remove them recursively remove_acl(filepath) # Some files have immu...

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def interm_fluent_ordering(self) -> List[str]: '''The list of intermediate-fluent names in canonical order. Returns: List[str]: A list of fluent names. ''' interm_fluents = self.intermediate_fluents.values() key = lambda pvar: (pvar.level, pvar.name) return [...

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def generate(self, api): """Generates a file that lists each namespace.""" with self.output_to_relative_path('ex1.out'): for namespace in api.namespaces.values(): self.emit(namespace.name)

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def authenticate(realm, authid, details): """ application_name : name of your application version : version of your application required_components dictionary of components required for you application and their version required { "component" : "1.1", "component2" : "0...

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async def send(self, request: Request[HTTPRequestType], **config: Any) -> Response[HTTPRequestType, AsyncHTTPResponseType]: """Send the request using this HTTP sender. """ pass

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def image_list(self, name=None): ''' List server images ''' nt_ks = self.compute_conn ret = {} for image in nt_ks.images.list(): links = {} for link in image.links: links[link['rel']] = link['href'] ret[image.name] = { ...

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def dosdate(dosdate, dostime): """ `dosdate`: 2 bytes, little endian. `dostime`: 2 bytes, little endian. returns: datetime.datetime or datetime.datetime.min on error """ try: t = ord(dosdate[1]) << 8 t |= ord(dosdate[0]) day = t & 0b0000000000011111 month = (t ...

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def qual_name(self) -> QualName: """Return the receiver's qualified name.""" p, s, loc = self._key.partition(":") return (loc, p) if s else (p, self.namespace)

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def data(self, data=None, ret_r=False): '''response data''' if data or ret_r: self._data = data return self return self._data

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28

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def _onLog(self, mqttc, obj, level, string): """ Called when the client has log information. See [paho.mqtt.python#on_log](https://github.com/eclipse/paho.mqtt.python#on_log) for more information # Parameters mqttc (paho.mqtt.client.Client): The client instanc...

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def setAllColor(self, color): """ Command: 0x06 sets all colors in the array Data: [Command][r][g][b] """ header = bytearray() header.append(LightProtocolCommand.SetAllColor) light = bytearray() light.extend(color) buff = header + light return self.send(buff)

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def view_meta_admonition(admonition_name, name=None): """List all found admonition from all the rst files found in directory. view_meta_admonition is called by the 'meta' url: /__XXXXXXX__ where XXXXXXX represents and admonition name, like: * todo * warning * danger * ... .. note:: th...

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def _record(self, ext_loc, parent_dir_num): # type: (int, int) -> bytes ''' An internal method to generate a string representing this Path Table Record. Parameters: ext_loc - The extent location to place in this Path Table Record. parent_dir_num - The parent directory ...

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def load_calls(self, call_type='jsonrpc'): """Loads the KvasirAPI calls into API.call based on the call_type variable. Utilizes the `Calls` class to establish an attribute-based access method. For instance a configuration with an instance called 'internal' will create an API.call that can be use...

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def calcChebyshev(coeffs, validDomain, freqs): """ Given a set of coefficients, this method evaluates a Chebyshev approximation. Used for CASA bandpass reading. input coeffs and freqs are numpy arrays """ logger = logging.getLogger(__name__) domain = (validDomain[1] - validDomain[0])[0...

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def infer_dtype_from_object(dtype): """ Get a numpy dtype.type-style object for a dtype object. This methods also includes handling of the datetime64[ns] and datetime64[ns, TZ] objects. If no dtype can be found, we return ``object``. Parameters ---------- dtype : dtype, type T...

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def fixcode(**kwargs): """ auto pep8 format all python file in ``source code`` and ``tests`` dir. """ # repository direcotry repo_dir = Path(__file__).parent.absolute() # source code directory source_dir = Path(repo_dir, package.__name__) if source_dir.exists(): print("Source c...

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def compute_discounts(self, precision=None): ''' Returns the total amount of discounts of this group. @param precision:int Total amount of discounts @return: Decimal ''' return sum([line.compute_discounts(precision) for line in self.__lines])

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def reuse(context, block_list, **kwargs): ''' Allow reuse of a block within a template. {% reuse '_myblock' foo=bar %} If passed a list of block names, will use the first that matches: {% reuse list_of_block_names .... %} ''' try: block_context = context.render_context[BLOCK_CONTE...

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def compute_search_efficiency_in_bins( found, total, ndbins, sim_to_bins_function=lambda sim: (sim.distance,)): """ Calculate search efficiency in the given ndbins. The first dimension of ndbins must be bins over injected distance. sim_to_bins_function must map an object to a tuple in...

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def _process_data(self, dd, offsets, data): # type: (Downloader, blobxfer.models.download.Descriptor, # blobxfer.models.download.Offsets, bytes) -> None """Process downloaded data for disk :param Downloader self: this :param blobxfer.models.download.Descriptor dd: download...

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def _render_full_resource(self, instance, include, fields): """ Generate a representation of a full resource to match JSON API spec. :param instance: The instance to serialize :param include: Dictionary of relationships to include :param fields: Dictionary of fields to filter ...

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def addvlan(self, vlanid, vlan_name): """ Function operates on the IMCDev object. Takes input of vlanid (1-4094), str of vlan_name, auth and url to execute the create_dev_vlan method on the IMCDev object. Device must be supported in the HPE IMC Platform VLAN Manager module. :para...

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def connect(url): """Connect to UNIX or TCP socket. url can be either tcp://<host>:port or ipc://<path> """ url = urlparse(url) if url.scheme == 'tcp': sock = socket() netloc = tuple(url.netloc.rsplit(':', 1)) hostname = socket.gethostname() elif url.scheme == 'ipc':...

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def _create_table_setup(self): """ Return a list of SQL statements that creates a table reflecting the structure of a DataFrame. The first entry will be a CREATE TABLE statement while the rest will be CREATE INDEX statements. """ column_names_and_types = self._get_column...

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def multipart_uploadpart(self, multipart): """Upload a part. :param multipart: A :class:`invenio_files_rest.models.MultipartObject` instance. :returns: A Flask response. """ content_length, part_number, stream, content_type, content_md5, tags =\ current_f...

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def dragMoveEvent( self, event ): """ Processes the drag drop event using the filter set by the \ setDragDropFilter :param event | <QDragEvent> """ filt = self.dragDropFilter() if not filt: super(XTreeWidget, self).dragMoveEvent(...

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def create_default_layout(config): """ Banana banana """ project_name = config.get('project_name') project_version = config.get('project_version') if not project_name or not project_version: error('setup-issue', '--project-name and --project-version must be specified') ...

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def get_content(api, rebuild_cache=False): """get content from server or cache""" if hasattr(get_content, 'cache') and not rebuild_cache: return get_content.cache if not os.path.exists(CONTENT_JSON) or rebuild_cache: import locale content_endpoint = api.content.get # pylint: ...

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def query(query, ts, **kwargs): """ Perform *query* on the testsuite *ts*. Note: currently only 'select' queries are supported. Args: query (str): TSQL query string ts (:class:`delphin.itsdb.TestSuite`): testsuite to query over kwargs: keyword arguments passed to the more speci...

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def define_threshold(dat, s_freq, method, value, nbins=120): """Return the value of the threshold based on relative values. Parameters ---------- dat : ndarray (dtype='float') vector with the data after selection-transformation s_freq : float sampling frequency method : str ...

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def rebuild(args): """ %prog rebuild blocksfile blastfile Rebuild anchors file from pre-built blocks file. """ p = OptionParser(rebuild.__doc__) p.add_option("--header", default=False, action="store_true", help="First line is header [default: %default]") p.add_option("--wri...

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def histogram2d(x, y, bins, range, weights=None): """ Compute a 2D histogram assuming equally spaced bins. Parameters ---------- x, y : `~numpy.ndarray` The position of the points to bin in the 2D histogram bins : int or iterable The number of bins in each dimension. If given as...

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def private_props(obj): """ Yield private properties of an object. A private property is defined as one that has a single underscore (:code:`_`) before its name :param obj: Object :type obj: object :returns: iterator """ # Get private properties but NOT magic methods props = ...

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def get_all(self, endpoint, params=None): # pylint: disable=too-many-locals """ Get all items in the specified endpoint of alignak backend If an error occurs, a BackendException is raised. If the max_results parameter is not specified in parameters, it is set to BACKEND...

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def _operator_handling(self, cursor): """Returns a string with the literal that are part of the operation.""" values = self._literal_handling(cursor) retval = ''.join([str(val) for val in values]) return retval

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def decode_network(objects): """Return root object from ref-containing obj table entries""" def resolve_ref(obj, objects=objects): if isinstance(obj, Ref): # first entry is 1 return objects[obj.index - 1] else: return obj # Reading the ObjTable backwards ...

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def get_jids(self): """Return JIDs for which this certificate is valid (except the domain wildcards). :Returtype: `list` of `JID` """ result = [] if ("XmppAddr" in self.alt_names or "DNS" in self.alt_names or "SRVName" in self....

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def is_associated_file(self): # type: () -> bool ''' A method to determine whether this file is 'associated' with another file on the ISO. Parameters: None. Returns: True if this file is associated with another file on the ISO, False otherwise....

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def get_dashboard(self, id, **kwargs): # noqa: E501 """Get a specific dashboard # noqa: E501 # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True >>> thread = api.get_dashboard(id, async_req=Tr...

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def read_bitpacked(file_obj, header, width, debug_logging): """Read a bitpacked run of the rle/bitpack hybrid. Supports width >8 (crossing bytes). """ num_groups = header >> 1 count = num_groups * 8 byte_count = (width * count) // 8 if debug_logging: logger.debug("Reading a bit-pack...

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def _get_chain_parent_symbol(self, symbol, fullsymbol): """Gets the code element object for the parent of the specified symbol in the fullsymbol chain.""" #We are only interested in the type of the variable immediately preceding our symbol #in the chain so we can list its members. ...

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def _get_ntgpadnt(self, ver, add_ns): """Create a namedtuple object for each annotation""" hdrs = self.gpad_columns[ver] if add_ns: hdrs = hdrs + ['NS'] return cx.namedtuple("ntgpadobj", hdrs)

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def initialize(): """ Method to parse and check configurations of FORD, get the project's global documentation, and create the Markdown reader. """ try: import multiprocessing ncpus = '{0}'.format(multiprocessing.cpu_count()) except (ImportError, NotImplementedError): nc...

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def convert_avgpool(params, w_name, scope_name, inputs, layers, weights, names): """ Convert Average pooling. Args: params: dictionary with layer parameters w_name: name prefix in state_dict scope_name: pytorch scope name inputs: pytorch node inputs layers: dictionar...

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def getSource(self, sourceKey, sourceTime=None): """ GetReturn a date/time tuple based on the giving source key and the corresponding key found in self.re_sources. The current time is used as the default and any specified item found in self.re_sources is inserted into the value ...

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def resolve_indices(self, index, start_val): """Get indices for the skeleton from the channels when loading in channel data.""" channels = self.vertices[index].meta['channels'] base_channel = start_val rot_ind = -np.ones(3, dtype=int) pos_ind = -np.ones(3, dtype=int) fo...

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def values(self): """ Returns the values for this axis. :return [<variant>, ..] """ if self._values is None: self._values = self.calculateValues() return self._values

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def get_nnsoap(obj, first_shell, alphas, betas, rcut=6, nmax=10, lmax=9, all_atomtypes=[]): """Takes cluster structure and nearest neighbour information of a datapoint, Returns concatenated soap vectors for each nearest neighbour (up to 3). Top, bridge, hollow fill the initial zero soap vector from left...

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def from_music_service(cls, music_service, content_dict): """Return an element instantiated from the information that a music service has (alternative constructor) Args: music_service (MusicService): The music service that content_dict originated from con...

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def reload_(name): ''' Reload the named service CLI Example: .. code-block:: bash salt '*' service.reload <service name> ''' cmd = '/usr/sbin/svcadm refresh {0}'.format(name) if not __salt__['cmd.retcode'](cmd, python_shell=False): # calling reload doesn't clear maintenanc...

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def log_start_finish(msg, logger, level=logging.DEBUG): """ A context manager to log messages with "start: " and "finish: " prefixes before and after a block. Parameters ---------- msg : str Will be prefixed with "start: " and "finish: ". logger : logging.Logger level : int, opt...

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def create_script_acl(self, id_vlan, network_type): '''Generate the script acl :param id_vlan: Vlan Id :param network_type: v4 or v6 :raise InvalidValueError: Attrs invalids. :raise XMLError: Networkapi failed to generate the XML response. :raise VlanACLDuplicatedError:...

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def save(self, file=CONFIG_FILE): """ Save configuration to provided path as a yaml file """ os.makedirs(os.path.dirname(file), exist_ok=True) with open(file, "w") as f: yaml.dump(self._settings, f, Dumper=yaml.RoundTripDumper, width=float("inf"))

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def rpc_fix_code(self, source, directory): """Formats Python code to conform to the PEP 8 style guide. """ source = get_source(source) return fix_code(source, directory)

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