kejian/codesearchnet-python-rebalanced · Datasets at Hugging Face

text stringlengths 75 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 0.18
def widget(self, which_viz='viz'): ''' Generate a widget visualization using the widget. The export_viz_to_widget method passes the visualization JSON to the instantiated widget, which is returned and visualized on the front-end. ''' if hasattr(self, 'widget_class') == True: self.widget_in...	[ "def", "widget", "(", "self", ",", "which_viz", "=", "'viz'", ")", ":", "if", "hasattr", "(", "self", ",", "'widget_class'", ")", "==", "True", ":", "self", ".", "widget_instance", "=", "self", ".", "widget_class", "(", "network", "=", "self", ".", "ex...	47.307692	0.017544
def save_and_check(response, local_file, expected_checksum): """Save the content of an http response and verify the checksum matches.""" with open(local_file, 'wb') as handle: for chunk in response.iter_content(4096): handle.write(chunk) actual_checksum = md5sum(local_file) if actua...	[ "def", "save_and_check", "(", "response", ",", "local_file", ",", "expected_checksum", ")", ":", "with", "open", "(", "local_file", ",", "'wb'", ")", "as", "handle", ":", "for", "chunk", "in", "response", ".", "iter_content", "(", "4096", ")", ":", "handle...	39.923077	0.001883
def get_user_cache_key(**kwargs): """ Generate suitable key to cache twitter tag context """ key = 'get_tweets_%s' % ('_'.join([str(kwargs[key]) for key in sorted(kwargs) if kwargs[key]])) not_allowed = re.compile('[^%s]' % ''.join([chr(i) for i in range(33, 128)])) key = not_allowed.sub('', key) ...	[ "def", "get_user_cache_key", "(", "", "", "kwargs", ")", ":", "key", "=", "'get_tweets_%s'", "%", "(", "'_'", ".", "join", "(", "[", "str", "(", "kwargs", "[", "key", "]", ")", "for", "key", "in", "sorted", "(", "kwargs", ")", "if", "kwargs", "["...	46.571429	0.009036
def _estimateCubicCurveLength(pt0, pt1, pt2, pt3, precision=10): """ Estimate the length of this curve by iterating through it and averaging the length of the flat bits. """ points = [] length = 0 step = 1.0 / precision factors = range(0, precision + 1) for i in factors: poin...	[ "def", "_estimateCubicCurveLength", "(", "pt0", ",", "pt1", ",", "pt2", ",", "pt3", ",", "precision", "=", "10", ")", ":", "points", "=", "[", "]", "length", "=", "0", "step", "=", "1.0", "/", "precision", "factors", "=", "range", "(", "0", ",", "p...	31.5625	0.001923
def record_iterator(xml): """ Iterate over all ``<record>`` tags in `xml`. Args: xml (str/file): Input string with XML. UTF-8 is prefered encoding, unicode should be ok. Yields: MARCXMLRecord: For each corresponding ``<record>``. """ # handle file-like o...	[ "def", "record_iterator", "(", "xml", ")", ":", "# handle file-like objects", "if", "hasattr", "(", "xml", ",", "\"read\"", ")", ":", "xml", "=", "xml", ".", "read", "(", ")", "dom", "=", "None", "try", ":", "dom", "=", "dhtmlparser", ".", "parseString",...	25.826087	0.001623
def GroupsSensorsGet(self, group_id, parameters): """ Retrieve sensors shared within the group. @param group_id (int) - Id of the group to retrieve sensors from @param parameters (dictionary) - Additional parameters for the call @r...	[ "def", "GroupsSensorsGet", "(", "self", ",", "group_id", ",", "parameters", ")", ":", "if", "self", ".", "__SenseApiCall", "(", "\"/groups/{0}/sensors.json\"", ".", "format", "(", "group_id", ")", ",", "\"GET\"", ",", "parameters", "=", "parameters", ")", ":",...	44.5	0.012579
def parse_proxy_line(line): """ Parse proxy details from the raw text line. The text line could be in one of the following formats: * host:port * host:port:username:password """ line = line.strip() match = RE_SIMPLE_PROXY.search(line) if match: return match.group(1), match....	[ "def", "parse_proxy_line", "(", "line", ")", ":", "line", "=", "line", ".", "strip", "(", ")", "match", "=", "RE_SIMPLE_PROXY", ".", "search", "(", "line", ")", "if", "match", ":", "return", "match", ".", "group", "(", "1", ")", ",", "match", ".", ...	26	0.001855
def merge_cookies(cookiejar, cookies): """Add cookies to cookiejar and returns a merged CookieJar. :param cookiejar: CookieJar object to add the cookies to. :param cookies: Dictionary or CookieJar object to be added. :rtype: CookieJar """ if not isinstance(cookiejar, cookielib.CookieJar): ...	[ "def", "merge_cookies", "(", "cookiejar", ",", "cookies", ")", ":", "if", "not", "isinstance", "(", "cookiejar", ",", "cookielib", ".", "CookieJar", ")", ":", "raise", "ValueError", "(", "'You can only merge into CookieJar'", ")", "if", "isinstance", "(", "cooki...	35.238095	0.001316
def unescape(self): """Convert escaped markup back into a text string. This replaces HTML entities with the characters they represent. >>> Markup('Main » <em>About</em>').unescape() 'Main » <em>About</em>' """ from ._constants import HTML_ENTITIES def hand...	[ "def", "unescape", "(", "self", ")", ":", "from", ".", "_constants", "import", "HTML_ENTITIES", "def", "handle_match", "(", "m", ")", ":", "name", "=", "m", ".", "group", "(", "1", ")", "if", "name", "in", "HTML_ENTITIES", ":", "return", "unichr", "(",...	34.291667	0.002364
def record_match_subfields(rec, tag, ind1=" ", ind2=" ", sub_key=None, sub_value='', sub_key2=None, sub_value2='', case_sensitive=True): """ Find subfield instances in a particular field. It tests values in 1 of 3 possible ways: - Does a subfield c...	[ "def", "record_match_subfields", "(", "rec", ",", "tag", ",", "ind1", "=", "\" \"", ",", "ind2", "=", "\" \"", ",", "sub_key", "=", "None", ",", "sub_value", "=", "''", ",", "sub_key2", "=", "None", ",", "sub_value2", "=", "''", ",", "case_sensitive", ...	40.555556	0.000446
def object_links(self, multihash, **kwargs): """Returns the links pointed to by the specified object. .. code-block:: python >>> c.object_links('QmTkzDwWqPbnAh5YiV5VwcTLnGdwSNsNTn2aDx … ca7D') {'Hash': 'QmTkzDwWqPbnAh5YiV5VwcTLnGdwSNsNTn2aDxdXBFca7D', 'Links': [ ...	[ "def", "object_links", "(", "self", ",", "multihash", ",", "", "", "kwargs", ")", ":", "args", "=", "(", "multihash", ",", ")", "return", "self", ".", "_client", ".", "request", "(", "'/object/links'", ",", "args", ",", "decoder", "=", "'json'", ",",...	43.612903	0.001447
def update(self): """Update the ports list.""" if self.input_method == 'local': # Only refresh: # * if there is not other scanning thread # * every refresh seconds (define in the configuration file) if self._thread is None: thread_is_runnin...	[ "def", "update", "(", "self", ")", ":", "if", "self", ".", "input_method", "==", "'local'", ":", "# Only refresh:", "# * if there is not other scanning thread", "# * every refresh seconds (define in the configuration file)", "if", "self", ".", "_thread", "is", "None", ":"...	37.291667	0.002179
def dot(r1, r2): """Compute the dot product Arguments: \| ``r1``, ``r2`` -- two :class:`Vector3` objects (Returns a Scalar) """ if r1.size != r2.size: raise ValueError("Both arguments must have the same input size.") if r1.deriv != r2.deriv: raise ValueError("Both...	[ "def", "dot", "(", "r1", ",", "r2", ")", ":", "if", "r1", ".", "size", "!=", "r2", ".", "size", ":", "raise", "ValueError", "(", "\"Both arguments must have the same input size.\"", ")", "if", "r1", ".", "deriv", "!=", "r2", ".", "deriv", ":", "raise", ...	30.076923	0.002481
def tokenize(string, language=None, escape='___'): """ Given a string, return a list of math symbol tokens """ # Set all words to lowercase string = string.lower() # Ignore punctuation if len(string) and not string[-1].isalnum(): character = string[-1] string = string[:-1] +...	[ "def", "tokenize", "(", "string", ",", "language", "=", "None", ",", "escape", "=", "'___'", ")", ":", "# Set all words to lowercase", "string", "=", "string", ".", "lower", "(", ")", "# Ignore punctuation", "if", "len", "(", "string", ")", "and", "not", "...	28.37931	0.001175
def user_password_requirements(self, user_id, kwargs): "https://developer.zendesk.com/rest_api/docs/core/users#get-a-list-of-password-requirements" api_path = "/api/v2/users/{user_id}/password/requirements.json" api_path = api_path.format(user_id=user_id) return self.call(api_path, k...	[ "def", "user_password_requirements", "(", "self", ",", "user_id", ",", "", "", "kwargs", ")", ":", "api_path", "=", "\"/api/v2/users/{user_id}/password/requirements.json\"", "api_path", "=", "api_path", ".", "format", "(", "user_id", "=", "user_id", ")", "return",...	64.4	0.009202
def mark_pausing(self): """Requests that the service move to the Paused state, without waiting for it to do so. Raises if the service is not currently in the Running state. """ with self._lock: self._set_state(self._PAUSING, self._RUNNING)	[ "def", "mark_pausing", "(", "self", ")", ":", "with", "self", ".", "_lock", ":", "self", ".", "_set_state", "(", "self", ".", "_PAUSING", ",", "self", ".", "_RUNNING", ")" ]	36.571429	0.01145
def moran_cultural(network): """Generalized cultural Moran process. At eachtime step, an individual is chosen to receive information from another individual. Nobody dies, but perhaps their ideas do. """ if not network.transmissions(): # first step, replacer is a source replacer = random.ch...	[ "def", "moran_cultural", "(", "network", ")", ":", "if", "not", "network", ".", "transmissions", "(", ")", ":", "# first step, replacer is a source", "replacer", "=", "random", ".", "choice", "(", "network", ".", "nodes", "(", "type", "=", "Source", ")", ")"...	36.736842	0.001397
def write(self, message): """ (coroutine) Write a single message into the pipe. """ if self.done_f.done(): raise BrokenPipeError try: yield From(write_message_to_pipe(self.pipe_instance.pipe_handle, message)) except BrokenPipeError: ...	[ "def", "write", "(", "self", ",", "message", ")", ":", "if", "self", ".", "done_f", ".", "done", "(", ")", ":", "raise", "BrokenPipeError", "try", ":", "yield", "From", "(", "write_message_to_pipe", "(", "self", ".", "pipe_instance", ".", "pipe_handle", ...	27.692308	0.008065
def ProcessHuntFlowDone(flow_obj, status_msg=None): """Notifis hunt about a given hunt-induced flow completion.""" if not hunt.IsLegacyHunt(flow_obj.parent_hunt_id): hunt_obj = hunt.StopHuntIfCPUOrNetworkLimitsExceeded( flow_obj.parent_hunt_id) hunt.CompleteHuntIfExpirationTimeReached(hunt_obj) ...	[ "def", "ProcessHuntFlowDone", "(", "flow_obj", ",", "status_msg", "=", "None", ")", ":", "if", "not", "hunt", ".", "IsLegacyHunt", "(", "flow_obj", ".", "parent_hunt_id", ")", ":", "hunt_obj", "=", "hunt", ".", "StopHuntIfCPUOrNetworkLimitsExceeded", "(", "flow_...	35.771429	0.008554
def setnx(self, key, value): """Set the value of a key, only if the key does not exist.""" fut = self.execute(b'SETNX', key, value) return wait_convert(fut, bool)	[ "def", "setnx", "(", "self", ",", "key", ",", "value", ")", ":", "fut", "=", "self", ".", "execute", "(", "b'SETNX'", ",", "key", ",", "value", ")", "return", "wait_convert", "(", "fut", ",", "bool", ")" ]	45.75	0.010753
def append(self, data): """Append the given `data` to the output. :arg data: If a list, it is formatted as a bullet list with each entry in the list being a separate bullet. Otherwise if it is a string, the string is added as a paragraph. :raises: ValueError if `data` ...	[ "def", "append", "(", "self", ",", "data", ")", ":", "if", "not", "data", ":", "return", "if", "isinstance", "(", "data", ",", "list", ")", ":", "# First we need to clean up the data.", "#", "# Gerrit creates new bullet items when it gets newline characters", "# withi...	41.461538	0.001208
def display(text, mode='exec', file=None): """ Show `text`, rendered as AST and as Bytecode. Parameters ---------- text : str Text of Python code to render. mode : {'exec', 'eval'}, optional Mode for `ast.parse` and `compile`. Default is 'exec'. file : None or file-like obj...	[ "def", "display", "(", "text", ",", "mode", "=", "'exec'", ",", "file", "=", "None", ")", ":", "if", "file", "is", "None", ":", "file", "=", "sys", ".", "stdout", "ast_section", "=", "StringIO", "(", ")", "a", "(", "text", ",", "mode", "=", "mode...	25.9	0.001241
def iter_leaf_names(self, is_leaf_fn=None): """Returns an iterator over the leaf names under this node.""" for n in self.iter_leaves(is_leaf_fn=is_leaf_fn): yield n.name	[ "def", "iter_leaf_names", "(", "self", ",", "is_leaf_fn", "=", "None", ")", ":", "for", "n", "in", "self", ".", "iter_leaves", "(", "is_leaf_fn", "=", "is_leaf_fn", ")", ":", "yield", "n", ".", "name" ]	48.5	0.010152
def parameters_to_tuples(self, params, collection_formats): """Get parameters as list of tuples, formatting collections. :param params: Parameters as dict or list of two-tuples :param dict collection_formats: Parameter collection formats :return: Parameters as list of tuples, collection...	[ "def", "parameters_to_tuples", "(", "self", ",", "params", ",", "collection_formats", ")", ":", "new_params", "=", "[", "]", "if", "collection_formats", "is", "None", ":", "collection_formats", "=", "{", "}", "for", "k", ",", "v", "in", "six", ".", "iterit...	45.172414	0.001495
def add_snow(img, snow_point, brightness_coeff): """Bleaches out pixels, mitation snow. From https://github.com/UjjwalSaxena/Automold--Road-Augmentation-Library Args: img: snow_point: brightness_coeff: Returns: """ non_rgb_warning(img) input_dtype = img.dtype ...	[ "def", "add_snow", "(", "img", ",", "snow_point", ",", "brightness_coeff", ")", ":", "non_rgb_warning", "(", "img", ")", "input_dtype", "=", "img", ".", "dtype", "needs_float", "=", "False", "snow_point", "*=", "127.5", "# = 255 / 2", "snow_point", "+=", "85",...	26.142857	0.001756
def import_categories(self, category_nodes): """ Import all the categories from 'wp:category' nodes, because categories in 'item' nodes are not necessarily all the categories and returning it in a dict for database optimizations. """ self.write_out(self.style.STEP...	[ "def", "import_categories", "(", "self", ",", "category_nodes", ")", ":", "self", ".", "write_out", "(", "self", ".", "style", ".", "STEP", "(", "'- Importing categories\\n'", ")", ")", "categories", "=", "{", "}", "for", "category_node", "in", "category_nodes...	42.538462	0.001768
def identifier_director(**kwargs): """Direct the identifier elements based on their qualifier.""" qualifier = kwargs.get('qualifier', '') content = kwargs.get('content', '') if qualifier == 'ISBN': return CitationISBN(content=content) elif qualifier == 'ISSN': return CitationISSN(con...	[ "def", "identifier_director", "(", "", "", "kwargs", ")", ":", "qualifier", "=", "kwargs", ".", "get", "(", "'qualifier'", ",", "''", ")", "content", "=", "kwargs", ".", "get", "(", "'content'", ",", "''", ")", "if", "qualifier", "==", "'ISBN'", ":",...	36.928571	0.001887
def Proxy(self, status, headers, exc_info=None): """Save args, defer start_response until response body is parsed. Create output buffer for body to be written into. Note: this is not quite WSGI compliant: The body should come back as an iterator returned from calling service_app() but instead, StartR...	[ "def", "Proxy", "(", "self", ",", "status", ",", "headers", ",", "exc_info", "=", "None", ")", ":", "self", ".", "call_context", "[", "'status'", "]", "=", "status", "self", ".", "call_context", "[", "'headers'", "]", "=", "headers", "self", ".", "call...	42.391304	0.001003
def register_fields(w): """ Register shapefile fields. """ PARAMS_LIST = [BASE_PARAMS, GEOMETRY_PARAMS, MFD_PARAMS] for PARAMS in PARAMS_LIST: for _, param, dtype in PARAMS: w.field(param, fieldType=dtype, size=FIELD_SIZE) PARAMS_LIST = [ RATE_PARAMS, STRIKE_PARAMS, ...	[ "def", "register_fields", "(", "w", ")", ":", "PARAMS_LIST", "=", "[", "BASE_PARAMS", ",", "GEOMETRY_PARAMS", ",", "MFD_PARAMS", "]", "for", "PARAMS", "in", "PARAMS_LIST", ":", "for", "_", ",", "param", ",", "dtype", "in", "PARAMS", ":", "w", ".", "field...	33.166667	0.001629
def make_PCEExtension_for_prebuilding_Code( name, Code, prebuild_sources, srcdir, downloads=None, **kwargs): """ If subclass of codeexport.Generic_Code needs to have some of it sources compiled to objects and cached in a `prebuilt/` directory at invocation of `setup.py build_ext` this co...	[ "def", "make_PCEExtension_for_prebuilding_Code", "(", "name", ",", "Code", ",", "prebuild_sources", ",", "srcdir", ",", "downloads", "=", "None", ",", "", "", "kwargs", ")", ":", "import", "glob", "from", ".", "dist", "import", "PCEExtension", "build_files", ...	37.025	0.000329
def change_default( kls, key, new_default, new_converter=None, new_reference_value=None, ): """return a new configman Option object that is a copy of an existing one, giving the new one a different default value""" an_option = kls.get_required_config()[key].copy() an_option.default =...	[ "def", "change_default", "(", "kls", ",", "key", ",", "new_default", ",", "new_converter", "=", "None", ",", "new_reference_value", "=", "None", ",", ")", ":", "an_option", "=", "kls", ".", "get_required_config", "(", ")", "[", "key", "]", ".", "copy", "...	31.5625	0.001923
def get(pb_or_dict, key, default=_SENTINEL): """Retrieve the given key off of the object. If a default is specified, return it if the key is not found, otherwise raise KeyError. Args: pb_or_dict (Union[~google.protobuf.message.Message, Mapping]): the object. key (str): The ...	[ "def", "get", "(", "pb_or_dict", ",", "key", ",", "default", "=", "_SENTINEL", ")", ":", "# We may need to get a nested key. Resolve this.", "key", ",", "subkey", "=", "_resolve_subkeys", "(", "key", ")", "# Attempt to get the value from the two types of objects we know bao...	40.26	0.000485
def async_process(funcs, args, executor=False, sol=None, callback=None, kw): """ Execute `func(args)` in an asynchronous parallel process. :param funcs: Functions to be executed. :type funcs: list[callable] :param args: Arguments to be passed to first function call. :type a...	[ "def", "async_process", "(", "funcs", ",", "", "args", ",", "executor", "=", "False", ",", "sol", "=", "None", ",", "callback", "=", "None", ",", "", "*", "kw", ")", ":", "name", "=", "_executor_name", "(", "executor", ",", "sol", ".", "dsp", ")"...	24.659091	0.000887
def unitary_operator(state_vector): """ Uses QR factorization to create a unitary operator that can encode an arbitrary normalized vector into the wavefunction of a quantum state. Assumes that the state of the input qubits is to be expressed as .. math:: (1, 0, \\ldots, 0)^T :par...	[ "def", "unitary_operator", "(", "state_vector", ")", ":", "if", "not", "np", ".", "allclose", "(", "[", "np", ".", "linalg", ".", "norm", "(", "state_vector", ")", "]", ",", "[", "1", "]", ")", ":", "raise", "ValueError", "(", "\"Vector must be normalize...	30.891892	0.001696
def get_xy_rotation_and_scale(header): """ CREDIT: See IDL code at http://www.astro.washington.edu/docs/idl/cgi-bin/getpro/library32.html?GETROT """ def calc_from_cd(cd1_1, cd1_2, cd2_1, cd2_2): # TODO: Check if first coordinate in CTYPE is latitude # if (ctype EQ 'DEC-') or (strmi...	[ "def", "get_xy_rotation_and_scale", "(", "header", ")", ":", "def", "calc_from_cd", "(", "cd1_1", ",", "cd1_2", ",", "cd2_1", ",", "cd2_2", ")", ":", "# TODO: Check if first coordinate in CTYPE is latitude", "# if (ctype EQ 'DEC-') or (strmid(ctype, 1) EQ 'LAT') then $", "# ...	29.011111	0.001481
def normalize_surfs(in_file, transform_file, newpath=None): """ Re-center GIFTI coordinates to fit align to native T1 space For midthickness surfaces, add MidThickness metadata Coordinate update based on: https://github.com/Washington-University/workbench/blob/1b79e56/src/Algorithms/AlgorithmSurfaceAp...	[ "def", "normalize_surfs", "(", "in_file", ",", "transform_file", ",", "newpath", "=", "None", ")", ":", "img", "=", "nb", ".", "load", "(", "in_file", ")", "transform", "=", "load_transform", "(", "transform_file", ")", "pointset", "=", "img", ".", "get_ar...	43.297872	0.001922
def _get_socket_no_auth(self): """Get or create a SocketInfo. Can raise ConnectionFailure.""" # We use the pid here to avoid issues with fork / multiprocessing. # See test.test_client:TestClient.test_fork for an example of # what could go wrong otherwise if self.pid != os.getpid(...	[ "def", "_get_socket_no_auth", "(", "self", ")", ":", "# We use the pid here to avoid issues with fork / multiprocessing.", "# See test.test_client:TestClient.test_fork for an example of", "# what could go wrong otherwise", "if", "self", ".", "pid", "!=", "os", ".", "getpid", "(", ...	37.944444	0.001428
def _export_all_keyword(self): """ Export method for keyword tab files """ data = {} for fluid_idx, fluid in enumerate(self.metadata["fluids"]): data[fluid] = {} with open(self.abspath) as fobj: text = fobj.read() t...	[ "def", "_export_all_keyword", "(", "self", ")", ":", "data", "=", "{", "}", "for", "fluid_idx", ",", "fluid", "in", "enumerate", "(", "self", ".", "metadata", "[", "\"fluids\"", "]", ")", ":", "data", "[", "fluid", "]", "=", "{", "}", "with", "open",...	41.863636	0.002123
def info(self): """ tuple of the start_pc, end_pc, handler_pc and catch_type_ref """ return (self.start_pc, self.end_pc, self.handler_pc, self.get_catch_type())	[ "def", "info", "(", "self", ")", ":", "return", "(", "self", ".", "start_pc", ",", "self", ".", "end_pc", ",", "self", ".", "handler_pc", ",", "self", ".", "get_catch_type", "(", ")", ")" ]	29	0.009569
async def encoder_config(self, pin_a, pin_b, cb=None, cb_type=None, hall_encoder=False): """ This command enables the rotary encoder support and will enable encoder reporting. This command is not part of StandardFirmata. For 2 pin + ground encoders, ...	[ "async", "def", "encoder_config", "(", "self", ",", "pin_a", ",", "pin_b", ",", "cb", "=", "None", ",", "cb_type", "=", "None", ",", "hall_encoder", "=", "False", ")", ":", "# checked when encoder data is returned", "self", ".", "hall_encoder", "=", "hall_enco...	36.641026	0.002045
def segments(self, using=None, **kwargs): """ Provide low level segments information that a Lucene index (shard level) is built with. Any additional keyword arguments will be passed to ``Elasticsearch.indices.segments`` unchanged. """ return self._get_connection(...	[ "def", "segments", "(", "self", ",", "using", "=", "None", ",", "", "", "kwargs", ")", ":", "return", "self", ".", "_get_connection", "(", "using", ")", ".", "indices", ".", "segments", "(", "index", "=", "self", ".", "_name", ",", "", "", "kwa...	40.333333	0.008086
def init_algebra(*, default_hs_cls='LocalSpace'): """Initialize the algebra system Args: default_hs_cls (str): The name of the :class:`.LocalSpace` subclass that should be used when implicitly creating Hilbert spaces, e.g. in :class:`.OperatorSymbol` """ from qnet.algeb...	[ "def", "init_algebra", "(", "*", ",", "default_hs_cls", "=", "'LocalSpace'", ")", ":", "from", "qnet", ".", "algebra", ".", "core", ".", "hilbert_space_algebra", "import", "LocalSpace", "from", "qnet", ".", "algebra", ".", "core", ".", "abstract_quantum_algebra"...	43.625	0.001403
def after(self, callback: Union[Callable, str]) -> "Control": """Register a control method that reacts after the trigger method is called. Parameters: callback: The control method. If given as a callable, then that function will be used as the callback. If gi...	[ "def", "after", "(", "self", ",", "callback", ":", "Union", "[", "Callable", ",", "str", "]", ")", "->", "\"Control\"", ":", "if", "isinstance", "(", "callback", ",", "Control", ")", ":", "callback", "=", "callback", ".", "_after", "self", ".", "_after...	44.538462	0.010152
def prepare_infrastructure(): """Entry point for preparing the infrastructure in a specific env.""" runner = ForemastRunner() runner.write_configs() runner.create_app() archaius = runner.configs[runner.env]['app']['archaius_enabled'] eureka = runner.configs[runner.env]['app']['eureka_enabled']...	[ "def", "prepare_infrastructure", "(", ")", ":", "runner", "=", "ForemastRunner", "(", ")", "runner", ".", "write_configs", "(", ")", "runner", ".", "create_app", "(", ")", "archaius", "=", "runner", ".", "configs", "[", "runner", ".", "env", "]", "[", "'...	31.882353	0.000895
def configure(self, src_dir, build_dir, **kwargs): """This function builds the cmake configure command.""" del kwargs ex_path = self._ex_args.get("project_path") if ex_path: src_dir = os.path.join(src_dir, ex_path) return [{"args": ["cmake", src_dir] + self._config_a...	[ "def", "configure", "(", "self", ",", "src_dir", ",", "build_dir", ",", "", "", "kwargs", ")", ":", "del", "kwargs", "ex_path", "=", "self", ".", "_ex_args", ".", "get", "(", "\"project_path\"", ")", "if", "ex_path", ":", "src_dir", "=", "os", ".", ...	42	0.008746
def setval(key, val, dict_=None, delim=DEFAULT_TARGET_DELIM): ''' Set a value under the dictionary hierarchy identified under the key. The target 'foo/bar/baz' returns the dictionary hierarchy {'foo': {'bar': {'baz': {}}}}. .. note:: Currently this doesn't work with integers, i.e. ...	[ "def", "setval", "(", "key", ",", "val", ",", "dict_", "=", "None", ",", "delim", "=", "DEFAULT_TARGET_DELIM", ")", ":", "if", "not", "dict_", ":", "dict_", "=", "{", "}", "prev_hier", "=", "dict_", "dict_hier", "=", "key", ".", "split", "(", "delim"...	26.703704	0.001339
def digester(data): """Create SHA-1 hash, get digest, b64 encode, split every 60 char.""" if not isinstance(data, six.binary_type): data = data.encode('utf_8') hashof = hashlib.sha1(data).digest() encoded_hash = base64.b64encode(hashof) if not isinstance(encoded_hash, six.string_types): ...	[ "def", "digester", "(", "data", ")", ":", "if", "not", "isinstance", "(", "data", ",", "six", ".", "binary_type", ")", ":", "data", "=", "data", ".", "encode", "(", "'utf_8'", ")", "hashof", "=", "hashlib", ".", "sha1", "(", "data", ")", ".", "dige...	41.454545	0.002146
def wordify(text): """Generate a list of words given text, removing punctuation. Parameters ---------- text : unicode A piece of english text. Returns ------- words : list List of words. """ stopset = set(nltk.corpus.stopwords.words('english')) tokens = nltk.Wor...	[ "def", "wordify", "(", "text", ")", ":", "stopset", "=", "set", "(", "nltk", ".", "corpus", ".", "stopwords", ".", "words", "(", "'english'", ")", ")", "tokens", "=", "nltk", ".", "WordPunctTokenizer", "(", ")", ".", "tokenize", "(", "text", ")", "re...	24.25	0.002481
def autoasync(coro=None, *, loop=None, forever=False, pass_loop=False): ''' Convert an asyncio coroutine into a function which, when called, is evaluted in an event loop, and the return value returned. This is intented to make it easy to write entry points into asyncio coroutines, which otherwise ne...	[ "def", "autoasync", "(", "coro", "=", "None", ",", "*", ",", "loop", "=", "None", ",", "forever", "=", "False", ",", "pass_loop", "=", "False", ")", ":", "if", "coro", "is", "None", ":", "return", "lambda", "c", ":", "autoasync", "(", "c", ",", "...	38.275862	0.000293
def _log_disconnect(self): """Decrement connection count""" if self.logged: self.server.stats.on_conn_closed() self.logged = False	[ "def", "_log_disconnect", "(", "self", ")", ":", "if", "self", ".", "logged", ":", "self", ".", "server", ".", "stats", ".", "on_conn_closed", "(", ")", "self", ".", "logged", "=", "False" ]	33.2	0.011765
def cache(handle=lambda args, *kwargs: None, args=UNDEFINED, kwargs=UNDEFINED, ignore=UNDEFINED, call_stack=UNDEFINED, callback=UNDEFINED, subsequent_rvalue=UNDEFINED): """ Store a call descriptor :param lambda handle: Any callable will work here. The method to cache. :param tuple args: The arguments...	[ "def", "cache", "(", "handle", "=", "lambda", "", "args", ",", "", "*", "kwargs", ":", "None", ",", "args", "=", "UNDEFINED", ",", "kwargs", "=", "UNDEFINED", ",", "ignore", "=", "UNDEFINED", ",", "call_stack", "=", "UNDEFINED", ",", "callback", "=",...	46.329268	0.009021
def get_signed_query_params_v2(credentials, expiration, string_to_sign): """Gets query parameters for creating a signed URL. :type credentials: :class:`google.auth.credentials.Signing` :param credentials: The credentials used to create a private key for signing text. :type expi...	[ "def", "get_signed_query_params_v2", "(", "credentials", ",", "expiration", ",", "string_to_sign", ")", ":", "ensure_signed_credentials", "(", "credentials", ")", "signature_bytes", "=", "credentials", ".", "sign_bytes", "(", "string_to_sign", ")", "signature", "=", "...	36.758621	0.000914
async def update_info(self): """Update current price info async.""" query = gql( """ { viewer { home(id: "%s") { appNickname features { realTimeConsumptionEnabled } currentSubscription {...	[ "async", "def", "update_info", "(", "self", ")", ":", "query", "=", "gql", "(", "\"\"\"\n {\n viewer {\n home(id: \"%s\") {\n appNickname\n features {\n realTimeConsumptionEnabled\n }\n currentSub...	24.222222	0.001259
def message(subject, message, access_token, all_members=False, project_member_ids=None, base_url=OH_BASE_URL): """ Send an email to individual users or in bulk. To learn more about Open Humans OAuth2 projects, go to: https://www.openhumans.org/direct-sharing/oauth2-features/ :param subj...	[ "def", "message", "(", "subject", ",", "message", ",", "access_token", ",", "all_members", "=", "False", ",", "project_member_ids", "=", "None", ",", "base_url", "=", "OH_BASE_URL", ")", ":", "url", "=", "urlparse", ".", "urljoin", "(", "base_url", ",", "'...	48.147059	0.000599
def atlasdb_renew_peer( peer_hostport, now, con=None, path=None ): """ Renew a peer's discovery time """ with AtlasDBOpen(con=con, path=path) as dbcon: if now is None: now = time.time() sql = "UPDATE peers SET discovery_time = ? WHERE peer_hostport = ?;" args = (now,...	[ "def", "atlasdb_renew_peer", "(", "peer_hostport", ",", "now", ",", "con", "=", "None", ",", "path", "=", "None", ")", ":", "with", "AtlasDBOpen", "(", "con", "=", "con", ",", "path", "=", "path", ")", "as", "dbcon", ":", "if", "now", "is", "None", ...	27.75	0.010893
def compile(node, uri, filename=None, default_filters=None, buffer_filters=None, imports=None, future_imports=None, source_encoding=None, generate_magic_comment=True, disable_u...	[ "def", "compile", "(", "node", ",", "uri", ",", "filename", "=", "None", ",", "default_filters", "=", "None", ",", "buffer_filters", "=", "None", ",", "imports", "=", "None", ",", "future_imports", "=", "None", ",", "source_encoding", "=", "None", ",", "...	41.162791	0.00883
def _parse_lines(self, diff_lines): """ Given the diff lines output from `git diff` for a particular source file, return a tuple of `(ADDED_LINES, DELETED_LINES)` where `ADDED_LINES` and `DELETED_LINES` are lists of line numbers added/deleted respectively. Raises a `Git...	[ "def", "_parse_lines", "(", "self", ",", "diff_lines", ")", ":", "added_lines", "=", "[", "]", "deleted_lines", "=", "[", "]", "current_line_new", "=", "None", "current_line_old", "=", "None", "for", "line", "in", "diff_lines", ":", "# If this is the start of th...	35.463768	0.000795
def _selectedBlockNumbers(self): """Return selected block numbers and tuple (startBlockNumber, endBlockNumber) """ startBlock, endBlock = self._selectedBlocks() return startBlock.blockNumber(), endBlock.blockNumber()	[ "def", "_selectedBlockNumbers", "(", "self", ")", ":", "startBlock", ",", "endBlock", "=", "self", ".", "_selectedBlocks", "(", ")", "return", "startBlock", ".", "blockNumber", "(", ")", ",", "endBlock", ".", "blockNumber", "(", ")" ]	48.8	0.012097
def json(self, *, # type: ignore loads: Callable[[Any], Any]=json.loads) -> None: """Return parsed JSON data. .. versionadded:: 0.22 """ return loads(self.data)	[ "def", "json", "(", "self", ",", "*", ",", "# type: ignore", "loads", ":", "Callable", "[", "[", "Any", "]", ",", "Any", "]", "=", "json", ".", "loads", ")", "->", "None", ":", "return", "loads", "(", "self", ".", "data", ")" ]	28.714286	0.024155
def get_cert_contents(kwargs): """Builds parameters with server cert file contents. Args: kwargs(dict): The keyword args passed to ensure_server_cert_exists, optionally containing the paths to the cert, key and chain files. Returns: dict: A dictionary containing the appropriate...	[ "def", "get_cert_contents", "(", "kwargs", ")", ":", "paths", "=", "{", "\"certificate\"", ":", "kwargs", ".", "get", "(", "\"path_to_certificate\"", ")", ",", "\"private_key\"", ":", "kwargs", ".", "get", "(", "\"path_to_private_key\"", ")", ",", "\"chain\"", ...	29.254902	0.000649
def read_address(self, ip_address): ''' a method to retrieve details about an elastic ip address associated with account on AWS :param ip_address: string with elastic ipv4 address on ec2 :return: dictionary with ip address details ''' t...	[ "def", "read_address", "(", "self", ",", "ip_address", ")", ":", "title", "=", "'%s.read_address'", "%", "self", ".", "__class__", ".", "__name__", "# validate inputs", "input_fields", "=", "{", "'ip_address'", ":", "ip_address", "}", "for", "key", ",", "value...	34.282609	0.008631
def p_expression_eql(self, p): 'expression : expression EQL expression' p[0] = Eql(p[1], p[3], lineno=p.lineno(1)) p.set_lineno(0, p.lineno(1))	[ "def", "p_expression_eql", "(", "self", ",", "p", ")", ":", "p", "[", "0", "]", "=", "Eql", "(", "p", "[", "1", "]", ",", "p", "[", "3", "]", ",", "lineno", "=", "p", ".", "lineno", "(", "1", ")", ")", "p", ".", "set_lineno", "(", "0", ",...	41	0.011976
def _page_to_text(page): """Extract the text from a page. Args: page: a unicode string Returns: a unicode string """ # text start tag looks like "<text ..otherstuff>" start_pos = page.find(u"<text") assert start_pos != -1 end_tag_pos = page.find(u">", start_pos) assert end_tag_pos != -1 end...	[ "def", "_page_to_text", "(", "page", ")", ":", "# text start tag looks like \"<text ..otherstuff>\"", "start_pos", "=", "page", ".", "find", "(", "u\"<text\"", ")", "assert", "start_pos", "!=", "-", "1", "end_tag_pos", "=", "page", ".", "find", "(", "u\">\"", ",...	23.777778	0.024719
def plot_voight_painting(painting, palette='colorblind', flank='right', ax=None, height_factor=0.01): """Plot a painting of shared haplotype prefixes. Parameters ---------- painting : array_like, int, shape (n_variants, n_haplotypes) Painting array. ax : axes, optio...	[ "def", "plot_voight_painting", "(", "painting", ",", "palette", "=", "'colorblind'", ",", "flank", "=", "'right'", ",", "ax", "=", "None", ",", "height_factor", "=", "0.01", ")", ":", "import", "seaborn", "as", "sns", "from", "matplotlib", ".", "colors", "...	28.901961	0.000656
def sentence2freqt(docgraph, root, successors=None, include_pos=False, escape_func=FREQT_ESCAPE_FUNC): """convert a sentence subgraph into a FREQT string.""" if successors is None: successors = sorted_bfs_successors(docgraph, root) if root in successors: # root node has children...	[ "def", "sentence2freqt", "(", "docgraph", ",", "root", ",", "successors", "=", "None", ",", "include_pos", "=", "False", ",", "escape_func", "=", "FREQT_ESCAPE_FUNC", ")", ":", "if", "successors", "is", "None", ":", "successors", "=", "sorted_bfs_successors", ...	52	0.001111
def ascolumn(x, dtype = None): '''Convert ``x`` into a ``column``-type ``numpy.ndarray``.''' x = asarray(x, dtype) return x if len(x.shape) >= 2 else x.reshape(len(x),1)	[ "def", "ascolumn", "(", "x", ",", "dtype", "=", "None", ")", ":", "x", "=", "asarray", "(", "x", ",", "dtype", ")", "return", "x", "if", "len", "(", "x", ".", "shape", ")", ">=", "2", "else", "x", ".", "reshape", "(", "len", "(", "x", ")", ...	45.25	0.021739
def draw_pdf(f, arg, bound, bins=100, scale=1.0, density=True, normed_pdf=False, ax=None, kwds): """ draw pdf with given argument and bounds. Arguments** * f your pdf. The first argument is assumed to be independent variable * arg argument can be tuple o...	[ "def", "draw_pdf", "(", "f", ",", "arg", ",", "bound", ",", "bins", "=", "100", ",", "scale", "=", "1.0", ",", "density", "=", "True", ",", "normed_pdf", "=", "False", ",", "ax", "=", "None", ",", "", "", "kwds", ")", ":", "edges", "=", "np",...	30.1875	0.002006
def function(self,p): """ Return a square-wave grating (alternating black and white bars). """ return np.around( 0.5 + 0.5np.sin(pi(p.duty_cycle-0.5)) + 0.5np.sin(p.frequency2piself.pattern_y + p.phase))	[ "def", "function", "(", "self", ",", "p", ")", ":", "return", "np", ".", "around", "(", "0.5", "+", "0.5", "", "np", ".", "sin", "(", "pi", "", "(", "p", ".", "duty_cycle", "-", "0.5", ")", ")", "+", "0.5", "*", "np", ".", "sin", "(", "p"...	33.75	0.01083
def get_repos(self): """ :calls: `GET /teams/:id/repos <http://developer.github.com/v3/orgs/teams>`_ :rtype: :class:`github.PaginatedList.PaginatedList` of :class:`github.Repository.Repository` """ return github.PaginatedList.PaginatedList( github.Repository.Repositor...	[ "def", "get_repos", "(", "self", ")", ":", "return", "github", ".", "PaginatedList", ".", "PaginatedList", "(", "github", ".", "Repository", ".", "Repository", ",", "self", ".", "_requester", ",", "self", ".", "url", "+", "\"/repos\"", ",", "None", ")" ]	36.454545	0.009732
def delete_user(iam_client, user, mfa_serial = None, keep_user = False, terminated_groups = []): """ Delete IAM user :param iam_client: :param user: :param mfa_serial: :param keep_user: :param terminated_groups: :return: """ errors = [] printInfo('Deleting user %s...' % user...	[ "def", "delete_user", "(", "iam_client", ",", "user", ",", "mfa_serial", "=", "None", ",", "keep_user", "=", "False", ",", "terminated_groups", "=", "[", "]", ")", ":", "errors", "=", "[", "]", "printInfo", "(", "'Deleting user %s...'", "%", "user", ")", ...	38.321739	0.011281
def in6_ifaceidtomac(ifaceid): # TODO: finish commenting function behavior """ Extract the mac address from provided iface ID. Iface ID is provided in printable format ("XXXX:XXFF:FEXX:XXXX", eventually compressed). None is returned on error. """ try: ifaceid = inet_pton(socket.AF_INET...	[ "def", "in6_ifaceidtomac", "(", "ifaceid", ")", ":", "# TODO: finish commenting function behavior", "try", ":", "ifaceid", "=", "inet_pton", "(", "socket", ".", "AF_INET6", ",", "\"::\"", "+", "ifaceid", ")", "[", "8", ":", "16", "]", "except", ":", "return", ...	37.55	0.011688
def _deactivate(self): """Remove the fetcher from cache and mark it not active.""" self.cache.remove_fetcher(self) if self.active: self._deactivated()	[ "def", "_deactivate", "(", "self", ")", ":", "self", ".", "cache", ".", "remove_fetcher", "(", "self", ")", "if", "self", ".", "active", ":", "self", ".", "_deactivated", "(", ")" ]	36.4	0.010753
def add_nic(self, instance_id, net_id): """Add a Network Interface Controller""" #TODO: upgrade with port_id and fixed_ip in future self.client.servers.interface_attach( instance_id, None, net_id, None) return True	[ "def", "add_nic", "(", "self", ",", "instance_id", ",", "net_id", ")", ":", "#TODO: upgrade with port_id and fixed_ip in future", "self", ".", "client", ".", "servers", ".", "interface_attach", "(", "instance_id", ",", "None", ",", "net_id", ",", "None", ")", "r...	42.166667	0.011628
def update(self, content): """Enumerates the bytes of the supplied bytearray and updates the CRC-64. No return value. """ for byte in content: self._crc64 = (self._crc64 >> 8) ^ self._lookup_table[(self._crc64 & 0xff) ^ byte]	[ "def", "update", "(", "self", ",", "content", ")", ":", "for", "byte", "in", "content", ":", "self", ".", "_crc64", "=", "(", "self", ".", "_crc64", ">>", "8", ")", "^", "self", ".", "_lookup_table", "[", "(", "self", ".", "_crc64", "&", "0xff", ...	38.142857	0.014652
def removeHtmlTags(self, text): """convert bad tags into HTML identities""" sb = [] text = self.removeHtmlComments(text) bits = text.split(u'<') sb.append(bits.pop(0)) tagstack = [] tablestack = tagstack for x in bits: m = _tagPattern.match(x) if not m: continue slash, t, params, brace, res...	[ "def", "removeHtmlTags", "(", "self", ",", "text", ")", ":", "sb", "=", "[", "]", "text", "=", "self", ".", "removeHtmlComments", "(", "text", ")", "bits", "=", "text", ".", "split", "(", "u'<'", ")", "sb", ".", "append", "(", "bits", ".", "pop", ...	25.673267	0.037133
def create_widget(self): """ Create the underlying widget. """ d = self.declaration self.widget = RelativeLayout(self.get_context(), None, d.style)	[ "def", "create_widget", "(", "self", ")", ":", "d", "=", "self", ".", "declaration", "self", ".", "widget", "=", "RelativeLayout", "(", "self", ".", "get_context", "(", ")", ",", "None", ",", "d", ".", "style", ")" ]	29.166667	0.011111
def MAPGenoToTrans(parsedGTF,feature): """ Gets all positions of all bases in an exon :param df: a Pandas dataframe with 'start','end', and 'strand' information for each entry. df must contain 'seqname','feature','start','end','strand','frame','gene_id', 'transcript_id','exo...	[ "def", "MAPGenoToTrans", "(", "parsedGTF", ",", "feature", ")", ":", "GenTransMap", "=", "parsedGTF", "[", "parsedGTF", "[", "\"feature\"", "]", "==", "feature", "]", "def", "getExonsPositions", "(", "df", ")", ":", "start", "=", "int", "(", "df", "[", "...	41.4	0.02439
def setHint(self, text): """ Sets the hint to the inputed text. The same hint will be used for all editors in this widget. :param text \| <str> """ texts = nativestring(text).split(' ') for i, text in enumerate(texts): ...	[ "def", "setHint", "(", "self", ",", "text", ")", ":", "texts", "=", "nativestring", "(", "text", ")", ".", "split", "(", "' '", ")", "for", "i", ",", "text", "in", "enumerate", "(", "texts", ")", ":", "editor", "=", "self", ".", "editorAt", "(", ...	28.733333	0.011236
def galprop_ringkey(self, kwargs): """ return the sourcekey for galprop input maps : specifies the component and ring """ kwargs_copy = self.base_dict.copy() kwargs_copy.update(kwargs) self._replace_none(kwargs_copy) try: return NameFactory.galprop...	[ "def", "galprop_ringkey", "(", "self", ",", "", "", "kwargs", ")", ":", "kwargs_copy", "=", "self", ".", "base_dict", ".", "copy", "(", ")", "kwargs_copy", ".", "update", "(", "", "", "kwargs", ")", "self", ".", "_replace_none", "(", "kwargs_copy", ...	39.7	0.009852
def call_method(self, method): """ Calls a blocking method in an executor, in order to preserve the non-blocking behaviour If ``method`` is a coroutine, yields from it and returns, no need to execute in in an executor. :param method: The method or coroutine to be called (with n...	[ "def", "call_method", "(", "self", ",", "method", ")", ":", "if", "self", ".", "_method_is_async_generator", "(", "method", ")", ":", "result", "=", "yield", "method", "(", ")", "else", ":", "result", "=", "yield", "self", ".", "executor", ".", "submit",...	37.2	0.008741
def verify_callable_argspec(callable_, expected_args=Argument.ignore, expect_starargs=Argument.ignore, expect_kwargs=Argument.ignore): """ Checks the callable_ to make sure that it satisfies the given expectations. expec...	[ "def", "verify_callable_argspec", "(", "callable_", ",", "expected_args", "=", "Argument", ".", "ignore", ",", "expect_starargs", "=", "Argument", ".", "ignore", ",", "expect_kwargs", "=", "Argument", ".", "ignore", ")", ":", "if", "not", "callable", "(", "cal...	29.8125	0.000406
def AddStatEntry(self, stat_entry, timestamp): """Registers stat entry at a given timestamp.""" if timestamp in self._stat_entries: message = ("Duplicated stat entry write for path '%s' of type '%s' at " "timestamp '%s'. Old: %s. New: %s.") message %= ("/".join(self._components), s...	[ "def", "AddStatEntry", "(", "self", ",", "stat_entry", ",", "timestamp", ")", ":", "if", "timestamp", "in", "self", ".", "_stat_entries", ":", "message", "=", "(", "\"Duplicated stat entry write for path '%s' of type '%s' at \"", "\"timestamp '%s'. Old: %s. New: %s.\"", "...	39.157895	0.009186
def init_model_based_tags(self, model): """Initializing the model based memory and NIC information tags. It should be called just after instantiating a RIBCL object. ribcl = ribcl.RIBCLOperations(host, login, password, timeout, port, cacert=cacert...	[ "def", "init_model_based_tags", "(", "self", ",", "model", ")", ":", "self", ".", "model", "=", "model", "if", "'G7'", "in", "self", ".", "model", ":", "self", ".", "MEMORY_SIZE_TAG", "=", "\"MEMORY_SIZE\"", "self", ".", "MEMORY_SIZE_NOT_PRESENT_TAG", "=", "...	39.913043	0.002128
def get_widget(self, page, language, fallback=Textarea): """Given the name of a placeholder return a `Widget` subclass like Textarea or TextInput.""" import sys PY3 = sys.version > '3' is_string = type(self.widget) == type(str()) if not PY3: is_string = type(s...	[ "def", "get_widget", "(", "self", ",", "page", ",", "language", ",", "fallback", "=", "Textarea", ")", ":", "import", "sys", "PY3", "=", "sys", ".", "version", ">", "'3'", "is_string", "=", "type", "(", "self", ".", "widget", ")", "==", "type", "(", ...	35.882353	0.009585
def approved_funds(pronac, dt): """ Verifica se o valor total de um projeto é um outlier em relação aos projetos do mesmo seguimento cultural Dataframes: planilha_orcamentaria """ funds_df = data.approved_funds_by_projects project = ( funds_df .loc[funds_df['PRONAC'] == ...	[ "def", "approved_funds", "(", "pronac", ",", "dt", ")", ":", "funds_df", "=", "data", ".", "approved_funds_by_projects", "project", "=", "(", "funds_df", ".", "loc", "[", "funds_df", "[", "'PRONAC'", "]", "==", "pronac", "]", ")", "project", "=", "project"...	27.935484	0.001116
def read_namespaced_job_status(self, name, namespace, **kwargs): # noqa: E501 """read_namespaced_job_status # noqa: E501 read status of the specified Job # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=...	[ "def", "read_namespaced_job_status", "(", "self", ",", "name", ",", "namespace", ",", "", "", "kwargs", ")", ":", "# noqa: E501", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'async_req'", ")", ":", "return...	50.086957	0.001704
def snippet(code, locations, sep=' \| ', colmark=('-', '^'), context=5): '''Given a code and list of locations, convert to snippet lines. return will include line number, a separator (``sep``), then line contents. At most ``context`` lines are shown before each location line. A...	[ "def", "snippet", "(", "code", ",", "locations", ",", "sep", "=", "' \| '", ",", "colmark", "=", "(", "'-'", ",", "'^'", ")", ",", "context", "=", "5", ")", ":", "if", "not", "locations", ":", "return", "[", "]", "lines", "=", "code", ".", "split"...	40.129032	0.00157
def unregisterThread(self, name): """ Unregister the Thread registered under the given name. Make sure that the given Thread is properly stopped, or that a reference is kept in another place. Once unregistered, this class will not keep any other references to the Thread. Parameters ---------- name: st...	[ "def", "unregisterThread", "(", "self", ",", "name", ")", ":", "if", "not", "name", "in", "self", ".", "thread_list", ":", "self", ".", "logger", ".", "error", "(", "\"Thread {0} is not registered!\"", ".", "format", "(", "name", ")", ")", "raise", "Except...	31.842105	0.028892
def _determine_function_name_type(node, config=None): """Determine the name type whose regex the a function's name should match. :param node: A function node. :type node: astroid.node_classes.NodeNG :param config: Configuration from which to pull additional property classes. :type config: :class:`o...	[ "def", "_determine_function_name_type", "(", "node", ",", "config", "=", "None", ")", ":", "property_classes", ",", "property_names", "=", "_get_properties", "(", "config", ")", "if", "not", "node", ".", "is_method", "(", ")", ":", "return", "\"function\"", "i...	38.416667	0.002116
def _get_frag_constr_table(self, start_atom=None, predefined_table=None, use_lookup=None, bond_dict=None): """Create a construction table for a Zmatrix. A construction table is basically a Zmatrix without the values for the bond lenghts, angles and dihedrals. ...	[ "def", "_get_frag_constr_table", "(", "self", ",", "start_atom", "=", "None", ",", "predefined_table", "=", "None", ",", "use_lookup", "=", "None", ",", "bond_dict", "=", "None", ")", ":", "if", "use_lookup", "is", "None", ":", "use_lookup", "=", "settings",...	44.271429	0.000473
def fix(args): """ %prog fix bedfile > newbedfile Fix non-standard bed files. One typical problem is start > end. """ p = OptionParser(fix.__doc__) p.add_option("--minspan", default=0, type="int", help="Enforce minimum span [default: %default]") p.set_outfile() opts, ar...	[ "def", "fix", "(", "args", ")", ":", "p", "=", "OptionParser", "(", "fix", ".", "__doc__", ")", "p", ".", "add_option", "(", "\"--minspan\"", ",", "default", "=", "0", ",", "type", "=", "\"int\"", ",", "help", "=", "\"Enforce minimum span [default: %defaul...	27.893617	0.001474
def cooccurrence(quantized_image, labels, scale_i=3, scale_j=0): """Calculates co-occurrence matrices for all the objects in the image. Return an array P of shape (nobjects, nlevels, nlevels) such that P[o, :, :] is the cooccurence matrix for object o. quantized_image -- a numpy array of integer type ...	[ "def", "cooccurrence", "(", "quantized_image", ",", "labels", ",", "scale_i", "=", "3", ",", "scale_j", "=", "0", ")", ":", "labels", "=", "labels", ".", "astype", "(", "int", ")", "nlevels", "=", "quantized_image", ".", "max", "(", ")", "+", "1", "n...	44.311475	0.002172
def _skw_matches_comparator(kw0, kw1): """Compare 2 single keywords objects. First by the number of their spans (ie. how many times they were found), if it is equal it compares them by lenghts of their labels. """ def compare(a, b): return (a > b) - (a < b) list_comparison = compare(le...	[ "def", "_skw_matches_comparator", "(", "kw0", ",", "kw1", ")", ":", "def", "compare", "(", "a", ",", "b", ")", ":", "return", "(", "a", ">", "b", ")", "-", "(", "a", "<", "b", ")", "list_comparison", "=", "compare", "(", "len", "(", "kw1", "[", ...	35.857143	0.001294
def num_orifices(FlowPlant, RatioVCOrifice, HeadLossOrifice, DiamOrifice): """Return the number of orifices.""" #Inputs do not need to be checked here because they are checked by #functions this function calls. return np.ceil(area_orifice(HeadLossOrifice, RatioVCOrifice, ...	[ "def", "num_orifices", "(", "FlowPlant", ",", "RatioVCOrifice", ",", "HeadLossOrifice", ",", "DiamOrifice", ")", ":", "#Inputs do not need to be checked here because they are checked by", "#functions this function calls.", "return", "np", ".", "ceil", "(", "area_orifice", "("...	56.142857	0.012531
def fetch(args): """ %prog fetch "query" OR %prog fetch queries.txt Please provide a UniProt compatible `query` to retrieve data. If `query` contains spaces, please remember to "quote" it. You can also specify a `filename` which contains queries, one per line. Follow this syntax <...	[ "def", "fetch", "(", "args", ")", ":", "import", "re", "import", "csv", "p", "=", "OptionParser", "(", "fetch", ".", "__doc__", ")", "p", ".", "add_option", "(", "\"--format\"", ",", "default", "=", "\"tab\"", ",", "choices", "=", "valid_formats", ",", ...	34.679245	0.002116
def _generateModel1(numCategories): """ Generate the initial, first order, and second order transition probabilities for 'model1'. For this model, we generate the following set of sequences: 0-10-15 (1X) 0-11-16 (1X) 0-12-17 (1X) 0-13-18 (1X) 0-14-19 (1X) 1-10-20 (1X) 1-11-21 (1X) 1-12-22 (1X)...	[ "def", "_generateModel1", "(", "numCategories", ")", ":", "# --------------------------------------------------------------------", "# Initial probabilities, 0 and 1 equally likely", "initProb", "=", "numpy", ".", "zeros", "(", "numCategories", ")", "initProb", "[", "0", "]", ...	32.184	0.018327
def _len_lcs(x, y): """Returns the length of the Longest Common Subsequence between two seqs. Source: http://www.algorithmist.com/index.php/Longest_Common_Subsequence Args: x: sequence of words y: sequence of words Returns integer: Length of LCS between x and y """ table = _lcs(x, y) n, m =...	[ "def", "_len_lcs", "(", "x", ",", "y", ")", ":", "table", "=", "_lcs", "(", "x", ",", "y", ")", "n", ",", "m", "=", "len", "(", "x", ")", ",", "len", "(", "y", ")", "return", "table", "[", "n", ",", "m", "]" ]	22.8	0.014045
def make_context_aware(func, numargs): """ Check if given function has no more arguments than given. If so, wrap it into another function that takes extra argument and drops it. Used to support user providing callback functions that are not context aware. """ try: if inspect.ismethod(fun...	[ "def", "make_context_aware", "(", "func", ",", "numargs", ")", ":", "try", ":", "if", "inspect", ".", "ismethod", "(", "func", ")", ":", "arg_count", "=", "len", "(", "inspect", ".", "getargspec", "(", "func", ")", ".", "args", ")", "-", "1", "elif",...	33.8	0.002301
def _function_header(subpackage, func): """Generate the docstring of a function.""" args = inspect.formatargspec(*inspect.getfullargspec(func)) return "{name}{args}".format(name=_full_name(subpackage, func), args=args, )	[ "def", "_function_header", "(", "subpackage", ",", "func", ")", ":", "args", "=", "inspect", ".", "formatargspec", "(", "*", "inspect", ".", "getfullargspec", "(", "func", ")", ")", "return", "\"{name}{args}\"", ".", "format", "(", "name", "=", "_full_name",...	49.5	0.009934
def find_all_files(self): """ Find files including those in subrepositories. """ files = self.find_files() subrepo_files = ( posixpath.join(subrepo.location, filename) for subrepo in self.subrepos() for filename in subrepo.find_files() ) return itertools.chain(files, subrepo_files)	[ "def", "find_all_files", "(", "self", ")", ":", "files", "=", "self", ".", "find_files", "(", ")", "subrepo_files", "=", "(", "posixpath", ".", "join", "(", "subrepo", ".", "location", ",", "filename", ")", "for", "subrepo", "in", "self", ".", "subrepos"...	26.818182	0.039344

def widget(self, which_viz='viz'): ''' Generate a widget visualization using the widget. The export_viz_to_widget method passes the visualization JSON to the instantiated widget, which is returned and visualized on the front-end. ''' if hasattr(self, 'widget_class') == True: self.widget_in...

[ "def", "widget", "(", "self", ",", "which_viz", "=", "'viz'", ")", ":", "if", "hasattr", "(", "self", ",", "'widget_class'", ")", "==", "True", ":", "self", ".", "widget_instance", "=", "self", ".", "widget_class", "(", "network", "=", "self", ".", "ex...

47.307692

0.017544

def save_and_check(response, local_file, expected_checksum): """Save the content of an http response and verify the checksum matches.""" with open(local_file, 'wb') as handle: for chunk in response.iter_content(4096): handle.write(chunk) actual_checksum = md5sum(local_file) if actua...

[ "def", "save_and_check", "(", "response", ",", "local_file", ",", "expected_checksum", ")", ":", "with", "open", "(", "local_file", ",", "'wb'", ")", "as", "handle", ":", "for", "chunk", "in", "response", ".", "iter_content", "(", "4096", ")", ":", "handle...

39.923077

0.001883

def get_user_cache_key(**kwargs): """ Generate suitable key to cache twitter tag context """ key = 'get_tweets_%s' % ('_'.join([str(kwargs[key]) for key in sorted(kwargs) if kwargs[key]])) not_allowed = re.compile('[^%s]' % ''.join([chr(i) for i in range(33, 128)])) key = not_allowed.sub('', key) ...

[ "def", "get_user_cache_key", "(", "*", "*", "kwargs", ")", ":", "key", "=", "'get_tweets_%s'", "%", "(", "'_'", ".", "join", "(", "[", "str", "(", "kwargs", "[", "key", "]", ")", "for", "key", "in", "sorted", "(", "kwargs", ")", "if", "kwargs", "["...

46.571429

0.009036

def _estimateCubicCurveLength(pt0, pt1, pt2, pt3, precision=10): """ Estimate the length of this curve by iterating through it and averaging the length of the flat bits. """ points = [] length = 0 step = 1.0 / precision factors = range(0, precision + 1) for i in factors: poin...

[ "def", "_estimateCubicCurveLength", "(", "pt0", ",", "pt1", ",", "pt2", ",", "pt3", ",", "precision", "=", "10", ")", ":", "points", "=", "[", "]", "length", "=", "0", "step", "=", "1.0", "/", "precision", "factors", "=", "range", "(", "0", ",", "p...

31.5625

0.001923

def record_iterator(xml): """ Iterate over all ``<record>`` tags in `xml`. Args: xml (str/file): Input string with XML. UTF-8 is prefered encoding, unicode should be ok. Yields: MARCXMLRecord: For each corresponding ``<record>``. """ # handle file-like o...

[ "def", "record_iterator", "(", "xml", ")", ":", "# handle file-like objects", "if", "hasattr", "(", "xml", ",", "\"read\"", ")", ":", "xml", "=", "xml", ".", "read", "(", ")", "dom", "=", "None", "try", ":", "dom", "=", "dhtmlparser", ".", "parseString",...

25.826087

0.001623

def GroupsSensorsGet(self, group_id, parameters): """ Retrieve sensors shared within the group. @param group_id (int) - Id of the group to retrieve sensors from @param parameters (dictionary) - Additional parameters for the call @r...

[ "def", "GroupsSensorsGet", "(", "self", ",", "group_id", ",", "parameters", ")", ":", "if", "self", ".", "__SenseApiCall", "(", "\"/groups/{0}/sensors.json\"", ".", "format", "(", "group_id", ")", ",", "\"GET\"", ",", "parameters", "=", "parameters", ")", ":",...

44.5

0.012579

def parse_proxy_line(line): """ Parse proxy details from the raw text line. The text line could be in one of the following formats: * host:port * host:port:username:password """ line = line.strip() match = RE_SIMPLE_PROXY.search(line) if match: return match.group(1), match....

[ "def", "parse_proxy_line", "(", "line", ")", ":", "line", "=", "line", ".", "strip", "(", ")", "match", "=", "RE_SIMPLE_PROXY", ".", "search", "(", "line", ")", "if", "match", ":", "return", "match", ".", "group", "(", "1", ")", ",", "match", ".", ...

26

0.001855

def merge_cookies(cookiejar, cookies): """Add cookies to cookiejar and returns a merged CookieJar. :param cookiejar: CookieJar object to add the cookies to. :param cookies: Dictionary or CookieJar object to be added. :rtype: CookieJar """ if not isinstance(cookiejar, cookielib.CookieJar): ...

[ "def", "merge_cookies", "(", "cookiejar", ",", "cookies", ")", ":", "if", "not", "isinstance", "(", "cookiejar", ",", "cookielib", ".", "CookieJar", ")", ":", "raise", "ValueError", "(", "'You can only merge into CookieJar'", ")", "if", "isinstance", "(", "cooki...

35.238095

0.001316

def unescape(self): """Convert escaped markup back into a text string. This replaces HTML entities with the characters they represent. >>> Markup('Main » <em>About</em>').unescape() 'Main » <em>About</em>' """ from ._constants import HTML_ENTITIES def hand...

[ "def", "unescape", "(", "self", ")", ":", "from", ".", "_constants", "import", "HTML_ENTITIES", "def", "handle_match", "(", "m", ")", ":", "name", "=", "m", ".", "group", "(", "1", ")", "if", "name", "in", "HTML_ENTITIES", ":", "return", "unichr", "(",...

34.291667

0.002364

def record_match_subfields(rec, tag, ind1=" ", ind2=" ", sub_key=None, sub_value='', sub_key2=None, sub_value2='', case_sensitive=True): """ Find subfield instances in a particular field. It tests values in 1 of 3 possible ways: - Does a subfield c...

[ "def", "record_match_subfields", "(", "rec", ",", "tag", ",", "ind1", "=", "\" \"", ",", "ind2", "=", "\" \"", ",", "sub_key", "=", "None", ",", "sub_value", "=", "''", ",", "sub_key2", "=", "None", ",", "sub_value2", "=", "''", ",", "case_sensitive", ...

40.555556

0.000446

def object_links(self, multihash, **kwargs): """Returns the links pointed to by the specified object. .. code-block:: python >>> c.object_links('QmTkzDwWqPbnAh5YiV5VwcTLnGdwSNsNTn2aDx … ca7D') {'Hash': 'QmTkzDwWqPbnAh5YiV5VwcTLnGdwSNsNTn2aDxdXBFca7D', 'Links': [ ...

[ "def", "object_links", "(", "self", ",", "multihash", ",", "*", "*", "kwargs", ")", ":", "args", "=", "(", "multihash", ",", ")", "return", "self", ".", "_client", ".", "request", "(", "'/object/links'", ",", "args", ",", "decoder", "=", "'json'", ",",...

43.612903

0.001447

def update(self): """Update the ports list.""" if self.input_method == 'local': # Only refresh: # * if there is not other scanning thread # * every refresh seconds (define in the configuration file) if self._thread is None: thread_is_runnin...

[ "def", "update", "(", "self", ")", ":", "if", "self", ".", "input_method", "==", "'local'", ":", "# Only refresh:", "# * if there is not other scanning thread", "# * every refresh seconds (define in the configuration file)", "if", "self", ".", "_thread", "is", "None", ":"...

37.291667

0.002179

def dot(r1, r2): """Compute the dot product Arguments: | ``r1``, ``r2`` -- two :class:`Vector3` objects (Returns a Scalar) """ if r1.size != r2.size: raise ValueError("Both arguments must have the same input size.") if r1.deriv != r2.deriv: raise ValueError("Both...

[ "def", "dot", "(", "r1", ",", "r2", ")", ":", "if", "r1", ".", "size", "!=", "r2", ".", "size", ":", "raise", "ValueError", "(", "\"Both arguments must have the same input size.\"", ")", "if", "r1", ".", "deriv", "!=", "r2", ".", "deriv", ":", "raise", ...

30.076923

0.002481

def tokenize(string, language=None, escape='___'): """ Given a string, return a list of math symbol tokens """ # Set all words to lowercase string = string.lower() # Ignore punctuation if len(string) and not string[-1].isalnum(): character = string[-1] string = string[:-1] +...

[ "def", "tokenize", "(", "string", ",", "language", "=", "None", ",", "escape", "=", "'___'", ")", ":", "# Set all words to lowercase", "string", "=", "string", ".", "lower", "(", ")", "# Ignore punctuation", "if", "len", "(", "string", ")", "and", "not", "...

28.37931

0.001175

def user_password_requirements(self, user_id, **kwargs): "https://developer.zendesk.com/rest_api/docs/core/users#get-a-list-of-password-requirements" api_path = "/api/v2/users/{user_id}/password/requirements.json" api_path = api_path.format(user_id=user_id) return self.call(api_path, **k...

[ "def", "user_password_requirements", "(", "self", ",", "user_id", ",", "*", "*", "kwargs", ")", ":", "api_path", "=", "\"/api/v2/users/{user_id}/password/requirements.json\"", "api_path", "=", "api_path", ".", "format", "(", "user_id", "=", "user_id", ")", "return",...

64.4

0.009202

def mark_pausing(self): """Requests that the service move to the Paused state, without waiting for it to do so. Raises if the service is not currently in the Running state. """ with self._lock: self._set_state(self._PAUSING, self._RUNNING)

[ "def", "mark_pausing", "(", "self", ")", ":", "with", "self", ".", "_lock", ":", "self", ".", "_set_state", "(", "self", ".", "_PAUSING", ",", "self", ".", "_RUNNING", ")" ]

36.571429

0.01145

def moran_cultural(network): """Generalized cultural Moran process. At eachtime step, an individual is chosen to receive information from another individual. Nobody dies, but perhaps their ideas do. """ if not network.transmissions(): # first step, replacer is a source replacer = random.ch...

[ "def", "moran_cultural", "(", "network", ")", ":", "if", "not", "network", ".", "transmissions", "(", ")", ":", "# first step, replacer is a source", "replacer", "=", "random", ".", "choice", "(", "network", ".", "nodes", "(", "type", "=", "Source", ")", ")"...

36.736842

0.001397

def write(self, message): """ (coroutine) Write a single message into the pipe. """ if self.done_f.done(): raise BrokenPipeError try: yield From(write_message_to_pipe(self.pipe_instance.pipe_handle, message)) except BrokenPipeError: ...

[ "def", "write", "(", "self", ",", "message", ")", ":", "if", "self", ".", "done_f", ".", "done", "(", ")", ":", "raise", "BrokenPipeError", "try", ":", "yield", "From", "(", "write_message_to_pipe", "(", "self", ".", "pipe_instance", ".", "pipe_handle", ...

27.692308

0.008065

def ProcessHuntFlowDone(flow_obj, status_msg=None): """Notifis hunt about a given hunt-induced flow completion.""" if not hunt.IsLegacyHunt(flow_obj.parent_hunt_id): hunt_obj = hunt.StopHuntIfCPUOrNetworkLimitsExceeded( flow_obj.parent_hunt_id) hunt.CompleteHuntIfExpirationTimeReached(hunt_obj) ...

[ "def", "ProcessHuntFlowDone", "(", "flow_obj", ",", "status_msg", "=", "None", ")", ":", "if", "not", "hunt", ".", "IsLegacyHunt", "(", "flow_obj", ".", "parent_hunt_id", ")", ":", "hunt_obj", "=", "hunt", ".", "StopHuntIfCPUOrNetworkLimitsExceeded", "(", "flow_...

35.771429

0.008554

def setnx(self, key, value): """Set the value of a key, only if the key does not exist.""" fut = self.execute(b'SETNX', key, value) return wait_convert(fut, bool)

[ "def", "setnx", "(", "self", ",", "key", ",", "value", ")", ":", "fut", "=", "self", ".", "execute", "(", "b'SETNX'", ",", "key", ",", "value", ")", "return", "wait_convert", "(", "fut", ",", "bool", ")" ]

45.75

0.010753

def append(self, data): """Append the given `data` to the output. :arg data: If a list, it is formatted as a bullet list with each entry in the list being a separate bullet. Otherwise if it is a string, the string is added as a paragraph. :raises: ValueError if `data` ...

[ "def", "append", "(", "self", ",", "data", ")", ":", "if", "not", "data", ":", "return", "if", "isinstance", "(", "data", ",", "list", ")", ":", "# First we need to clean up the data.", "#", "# Gerrit creates new bullet items when it gets newline characters", "# withi...

41.461538

0.001208

def display(text, mode='exec', file=None): """ Show `text`, rendered as AST and as Bytecode. Parameters ---------- text : str Text of Python code to render. mode : {'exec', 'eval'}, optional Mode for `ast.parse` and `compile`. Default is 'exec'. file : None or file-like obj...

[ "def", "display", "(", "text", ",", "mode", "=", "'exec'", ",", "file", "=", "None", ")", ":", "if", "file", "is", "None", ":", "file", "=", "sys", ".", "stdout", "ast_section", "=", "StringIO", "(", ")", "a", "(", "text", ",", "mode", "=", "mode...

25.9

0.001241

def iter_leaf_names(self, is_leaf_fn=None): """Returns an iterator over the leaf names under this node.""" for n in self.iter_leaves(is_leaf_fn=is_leaf_fn): yield n.name

[ "def", "iter_leaf_names", "(", "self", ",", "is_leaf_fn", "=", "None", ")", ":", "for", "n", "in", "self", ".", "iter_leaves", "(", "is_leaf_fn", "=", "is_leaf_fn", ")", ":", "yield", "n", ".", "name" ]

48.5

0.010152

def parameters_to_tuples(self, params, collection_formats): """Get parameters as list of tuples, formatting collections. :param params: Parameters as dict or list of two-tuples :param dict collection_formats: Parameter collection formats :return: Parameters as list of tuples, collection...

[ "def", "parameters_to_tuples", "(", "self", ",", "params", ",", "collection_formats", ")", ":", "new_params", "=", "[", "]", "if", "collection_formats", "is", "None", ":", "collection_formats", "=", "{", "}", "for", "k", ",", "v", "in", "six", ".", "iterit...

45.172414

0.001495

def add_snow(img, snow_point, brightness_coeff): """Bleaches out pixels, mitation snow. From https://github.com/UjjwalSaxena/Automold--Road-Augmentation-Library Args: img: snow_point: brightness_coeff: Returns: """ non_rgb_warning(img) input_dtype = img.dtype ...

[ "def", "add_snow", "(", "img", ",", "snow_point", ",", "brightness_coeff", ")", ":", "non_rgb_warning", "(", "img", ")", "input_dtype", "=", "img", ".", "dtype", "needs_float", "=", "False", "snow_point", "*=", "127.5", "# = 255 / 2", "snow_point", "+=", "85",...

26.142857

0.001756

def import_categories(self, category_nodes): """ Import all the categories from 'wp:category' nodes, because categories in 'item' nodes are not necessarily all the categories and returning it in a dict for database optimizations. """ self.write_out(self.style.STEP...

[ "def", "import_categories", "(", "self", ",", "category_nodes", ")", ":", "self", ".", "write_out", "(", "self", ".", "style", ".", "STEP", "(", "'- Importing categories\\n'", ")", ")", "categories", "=", "{", "}", "for", "category_node", "in", "category_nodes...

42.538462

0.001768

def identifier_director(**kwargs): """Direct the identifier elements based on their qualifier.""" qualifier = kwargs.get('qualifier', '') content = kwargs.get('content', '') if qualifier == 'ISBN': return CitationISBN(content=content) elif qualifier == 'ISSN': return CitationISSN(con...

[ "def", "identifier_director", "(", "*", "*", "kwargs", ")", ":", "qualifier", "=", "kwargs", ".", "get", "(", "'qualifier'", ",", "''", ")", "content", "=", "kwargs", ".", "get", "(", "'content'", ",", "''", ")", "if", "qualifier", "==", "'ISBN'", ":",...

36.928571

0.001887

def Proxy(self, status, headers, exc_info=None): """Save args, defer start_response until response body is parsed. Create output buffer for body to be written into. Note: this is not quite WSGI compliant: The body should come back as an iterator returned from calling service_app() but instead, StartR...

[ "def", "Proxy", "(", "self", ",", "status", ",", "headers", ",", "exc_info", "=", "None", ")", ":", "self", ".", "call_context", "[", "'status'", "]", "=", "status", "self", ".", "call_context", "[", "'headers'", "]", "=", "headers", "self", ".", "call...

42.391304

0.001003

def register_fields(w): """ Register shapefile fields. """ PARAMS_LIST = [BASE_PARAMS, GEOMETRY_PARAMS, MFD_PARAMS] for PARAMS in PARAMS_LIST: for _, param, dtype in PARAMS: w.field(param, fieldType=dtype, size=FIELD_SIZE) PARAMS_LIST = [ RATE_PARAMS, STRIKE_PARAMS, ...

[ "def", "register_fields", "(", "w", ")", ":", "PARAMS_LIST", "=", "[", "BASE_PARAMS", ",", "GEOMETRY_PARAMS", ",", "MFD_PARAMS", "]", "for", "PARAMS", "in", "PARAMS_LIST", ":", "for", "_", ",", "param", ",", "dtype", "in", "PARAMS", ":", "w", ".", "field...

33.166667

0.001629

def make_PCEExtension_for_prebuilding_Code( name, Code, prebuild_sources, srcdir, downloads=None, **kwargs): """ If subclass of codeexport.Generic_Code needs to have some of it sources compiled to objects and cached in a `prebuilt/` directory at invocation of `setup.py build_ext` this co...

[ "def", "make_PCEExtension_for_prebuilding_Code", "(", "name", ",", "Code", ",", "prebuild_sources", ",", "srcdir", ",", "downloads", "=", "None", ",", "*", "*", "kwargs", ")", ":", "import", "glob", "from", ".", "dist", "import", "PCEExtension", "build_files", ...

37.025

0.000329

def change_default( kls, key, new_default, new_converter=None, new_reference_value=None, ): """return a new configman Option object that is a copy of an existing one, giving the new one a different default value""" an_option = kls.get_required_config()[key].copy() an_option.default =...

[ "def", "change_default", "(", "kls", ",", "key", ",", "new_default", ",", "new_converter", "=", "None", ",", "new_reference_value", "=", "None", ",", ")", ":", "an_option", "=", "kls", ".", "get_required_config", "(", ")", "[", "key", "]", ".", "copy", "...

31.5625

0.001923

def get(pb_or_dict, key, default=_SENTINEL): """Retrieve the given key off of the object. If a default is specified, return it if the key is not found, otherwise raise KeyError. Args: pb_or_dict (Union[~google.protobuf.message.Message, Mapping]): the object. key (str): The ...

[ "def", "get", "(", "pb_or_dict", ",", "key", ",", "default", "=", "_SENTINEL", ")", ":", "# We may need to get a nested key. Resolve this.", "key", ",", "subkey", "=", "_resolve_subkeys", "(", "key", ")", "# Attempt to get the value from the two types of objects we know bao...

40.26

0.000485

def async_process(funcs, *args, executor=False, sol=None, callback=None, **kw): """ Execute `func(*args)` in an asynchronous parallel process. :param funcs: Functions to be executed. :type funcs: list[callable] :param args: Arguments to be passed to first function call. :type a...

[ "def", "async_process", "(", "funcs", ",", "*", "args", ",", "executor", "=", "False", ",", "sol", "=", "None", ",", "callback", "=", "None", ",", "*", "*", "kw", ")", ":", "name", "=", "_executor_name", "(", "executor", ",", "sol", ".", "dsp", ")"...

24.659091

0.000887

def unitary_operator(state_vector): """ Uses QR factorization to create a unitary operator that can encode an arbitrary normalized vector into the wavefunction of a quantum state. Assumes that the state of the input qubits is to be expressed as .. math:: (1, 0, \\ldots, 0)^T :par...

[ "def", "unitary_operator", "(", "state_vector", ")", ":", "if", "not", "np", ".", "allclose", "(", "[", "np", ".", "linalg", ".", "norm", "(", "state_vector", ")", "]", ",", "[", "1", "]", ")", ":", "raise", "ValueError", "(", "\"Vector must be normalize...

30.891892

0.001696

def get_xy_rotation_and_scale(header): """ CREDIT: See IDL code at http://www.astro.washington.edu/docs/idl/cgi-bin/getpro/library32.html?GETROT """ def calc_from_cd(cd1_1, cd1_2, cd2_1, cd2_2): # TODO: Check if first coordinate in CTYPE is latitude # if (ctype EQ 'DEC-') or (strmi...

[ "def", "get_xy_rotation_and_scale", "(", "header", ")", ":", "def", "calc_from_cd", "(", "cd1_1", ",", "cd1_2", ",", "cd2_1", ",", "cd2_2", ")", ":", "# TODO: Check if first coordinate in CTYPE is latitude", "# if (ctype EQ 'DEC-') or (strmid(ctype, 1) EQ 'LAT') then $", "# ...

29.011111

0.001481

def normalize_surfs(in_file, transform_file, newpath=None): """ Re-center GIFTI coordinates to fit align to native T1 space For midthickness surfaces, add MidThickness metadata Coordinate update based on: https://github.com/Washington-University/workbench/blob/1b79e56/src/Algorithms/AlgorithmSurfaceAp...

[ "def", "normalize_surfs", "(", "in_file", ",", "transform_file", ",", "newpath", "=", "None", ")", ":", "img", "=", "nb", ".", "load", "(", "in_file", ")", "transform", "=", "load_transform", "(", "transform_file", ")", "pointset", "=", "img", ".", "get_ar...

43.297872

0.001922

def _get_socket_no_auth(self): """Get or create a SocketInfo. Can raise ConnectionFailure.""" # We use the pid here to avoid issues with fork / multiprocessing. # See test.test_client:TestClient.test_fork for an example of # what could go wrong otherwise if self.pid != os.getpid(...

[ "def", "_get_socket_no_auth", "(", "self", ")", ":", "# We use the pid here to avoid issues with fork / multiprocessing.", "# See test.test_client:TestClient.test_fork for an example of", "# what could go wrong otherwise", "if", "self", ".", "pid", "!=", "os", ".", "getpid", "(", ...

37.944444

0.001428

def _export_all_keyword(self): """ Export method for keyword tab files """ data = {} for fluid_idx, fluid in enumerate(self.metadata["fluids"]): data[fluid] = {} with open(self.abspath) as fobj: text = fobj.read() t...

[ "def", "_export_all_keyword", "(", "self", ")", ":", "data", "=", "{", "}", "for", "fluid_idx", ",", "fluid", "in", "enumerate", "(", "self", ".", "metadata", "[", "\"fluids\"", "]", ")", ":", "data", "[", "fluid", "]", "=", "{", "}", "with", "open",...

41.863636

0.002123

def info(self): """ tuple of the start_pc, end_pc, handler_pc and catch_type_ref """ return (self.start_pc, self.end_pc, self.handler_pc, self.get_catch_type())

[ "def", "info", "(", "self", ")", ":", "return", "(", "self", ".", "start_pc", ",", "self", ".", "end_pc", ",", "self", ".", "handler_pc", ",", "self", ".", "get_catch_type", "(", ")", ")" ]

29

0.009569

async def encoder_config(self, pin_a, pin_b, cb=None, cb_type=None, hall_encoder=False): """ This command enables the rotary encoder support and will enable encoder reporting. This command is not part of StandardFirmata. For 2 pin + ground encoders, ...

[ "async", "def", "encoder_config", "(", "self", ",", "pin_a", ",", "pin_b", ",", "cb", "=", "None", ",", "cb_type", "=", "None", ",", "hall_encoder", "=", "False", ")", ":", "# checked when encoder data is returned", "self", ".", "hall_encoder", "=", "hall_enco...

36.641026

0.002045

def segments(self, using=None, **kwargs): """ Provide low level segments information that a Lucene index (shard level) is built with. Any additional keyword arguments will be passed to ``Elasticsearch.indices.segments`` unchanged. """ return self._get_connection(...

[ "def", "segments", "(", "self", ",", "using", "=", "None", ",", "*", "*", "kwargs", ")", ":", "return", "self", ".", "_get_connection", "(", "using", ")", ".", "indices", ".", "segments", "(", "index", "=", "self", ".", "_name", ",", "*", "*", "kwa...

40.333333

0.008086

def init_algebra(*, default_hs_cls='LocalSpace'): """Initialize the algebra system Args: default_hs_cls (str): The name of the :class:`.LocalSpace` subclass that should be used when implicitly creating Hilbert spaces, e.g. in :class:`.OperatorSymbol` """ from qnet.algeb...

[ "def", "init_algebra", "(", "*", ",", "default_hs_cls", "=", "'LocalSpace'", ")", ":", "from", "qnet", ".", "algebra", ".", "core", ".", "hilbert_space_algebra", "import", "LocalSpace", "from", "qnet", ".", "algebra", ".", "core", ".", "abstract_quantum_algebra"...

43.625

0.001403

def after(self, callback: Union[Callable, str]) -> "Control": """Register a control method that reacts after the trigger method is called. Parameters: callback: The control method. If given as a callable, then that function will be used as the callback. If gi...

[ "def", "after", "(", "self", ",", "callback", ":", "Union", "[", "Callable", ",", "str", "]", ")", "->", "\"Control\"", ":", "if", "isinstance", "(", "callback", ",", "Control", ")", ":", "callback", "=", "callback", ".", "_after", "self", ".", "_after...

44.538462

0.010152

def prepare_infrastructure(): """Entry point for preparing the infrastructure in a specific env.""" runner = ForemastRunner() runner.write_configs() runner.create_app() archaius = runner.configs[runner.env]['app']['archaius_enabled'] eureka = runner.configs[runner.env]['app']['eureka_enabled']...

[ "def", "prepare_infrastructure", "(", ")", ":", "runner", "=", "ForemastRunner", "(", ")", "runner", ".", "write_configs", "(", ")", "runner", ".", "create_app", "(", ")", "archaius", "=", "runner", ".", "configs", "[", "runner", ".", "env", "]", "[", "'...

31.882353

0.000895

def configure(self, src_dir, build_dir, **kwargs): """This function builds the cmake configure command.""" del kwargs ex_path = self._ex_args.get("project_path") if ex_path: src_dir = os.path.join(src_dir, ex_path) return [{"args": ["cmake", src_dir] + self._config_a...

[ "def", "configure", "(", "self", ",", "src_dir", ",", "build_dir", ",", "*", "*", "kwargs", ")", ":", "del", "kwargs", "ex_path", "=", "self", ".", "_ex_args", ".", "get", "(", "\"project_path\"", ")", "if", "ex_path", ":", "src_dir", "=", "os", ".", ...

42

0.008746

def setval(key, val, dict_=None, delim=DEFAULT_TARGET_DELIM): ''' Set a value under the dictionary hierarchy identified under the key. The target 'foo/bar/baz' returns the dictionary hierarchy {'foo': {'bar': {'baz': {}}}}. .. note:: Currently this doesn't work with integers, i.e. ...

[ "def", "setval", "(", "key", ",", "val", ",", "dict_", "=", "None", ",", "delim", "=", "DEFAULT_TARGET_DELIM", ")", ":", "if", "not", "dict_", ":", "dict_", "=", "{", "}", "prev_hier", "=", "dict_", "dict_hier", "=", "key", ".", "split", "(", "delim"...

26.703704

0.001339

def digester(data): """Create SHA-1 hash, get digest, b64 encode, split every 60 char.""" if not isinstance(data, six.binary_type): data = data.encode('utf_8') hashof = hashlib.sha1(data).digest() encoded_hash = base64.b64encode(hashof) if not isinstance(encoded_hash, six.string_types): ...

[ "def", "digester", "(", "data", ")", ":", "if", "not", "isinstance", "(", "data", ",", "six", ".", "binary_type", ")", ":", "data", "=", "data", ".", "encode", "(", "'utf_8'", ")", "hashof", "=", "hashlib", ".", "sha1", "(", "data", ")", ".", "dige...

41.454545

0.002146

def wordify(text): """Generate a list of words given text, removing punctuation. Parameters ---------- text : unicode A piece of english text. Returns ------- words : list List of words. """ stopset = set(nltk.corpus.stopwords.words('english')) tokens = nltk.Wor...

[ "def", "wordify", "(", "text", ")", ":", "stopset", "=", "set", "(", "nltk", ".", "corpus", ".", "stopwords", ".", "words", "(", "'english'", ")", ")", "tokens", "=", "nltk", ".", "WordPunctTokenizer", "(", ")", ".", "tokenize", "(", "text", ")", "re...

24.25

0.002481

def autoasync(coro=None, *, loop=None, forever=False, pass_loop=False): ''' Convert an asyncio coroutine into a function which, when called, is evaluted in an event loop, and the return value returned. This is intented to make it easy to write entry points into asyncio coroutines, which otherwise ne...

[ "def", "autoasync", "(", "coro", "=", "None", ",", "*", ",", "loop", "=", "None", ",", "forever", "=", "False", ",", "pass_loop", "=", "False", ")", ":", "if", "coro", "is", "None", ":", "return", "lambda", "c", ":", "autoasync", "(", "c", ",", "...

38.275862

0.000293

def _log_disconnect(self): """Decrement connection count""" if self.logged: self.server.stats.on_conn_closed() self.logged = False

[ "def", "_log_disconnect", "(", "self", ")", ":", "if", "self", ".", "logged", ":", "self", ".", "server", ".", "stats", ".", "on_conn_closed", "(", ")", "self", ".", "logged", "=", "False" ]

33.2

0.011765

def cache(handle=lambda *args, **kwargs: None, args=UNDEFINED, kwargs=UNDEFINED, ignore=UNDEFINED, call_stack=UNDEFINED, callback=UNDEFINED, subsequent_rvalue=UNDEFINED): """ Store a call descriptor :param lambda handle: Any callable will work here. The method to cache. :param tuple args: The arguments...

[ "def", "cache", "(", "handle", "=", "lambda", "*", "args", ",", "*", "*", "kwargs", ":", "None", ",", "args", "=", "UNDEFINED", ",", "kwargs", "=", "UNDEFINED", ",", "ignore", "=", "UNDEFINED", ",", "call_stack", "=", "UNDEFINED", ",", "callback", "=",...

46.329268

0.009021

def get_signed_query_params_v2(credentials, expiration, string_to_sign): """Gets query parameters for creating a signed URL. :type credentials: :class:`google.auth.credentials.Signing` :param credentials: The credentials used to create a private key for signing text. :type expi...

[ "def", "get_signed_query_params_v2", "(", "credentials", ",", "expiration", ",", "string_to_sign", ")", ":", "ensure_signed_credentials", "(", "credentials", ")", "signature_bytes", "=", "credentials", ".", "sign_bytes", "(", "string_to_sign", ")", "signature", "=", "...

36.758621

0.000914

async def update_info(self): """Update current price info async.""" query = gql( """ { viewer { home(id: "%s") { appNickname features { realTimeConsumptionEnabled } currentSubscription {...

[ "async", "def", "update_info", "(", "self", ")", ":", "query", "=", "gql", "(", "\"\"\"\n {\n viewer {\n home(id: \"%s\") {\n appNickname\n features {\n realTimeConsumptionEnabled\n }\n currentSub...

24.222222

0.001259

def message(subject, message, access_token, all_members=False, project_member_ids=None, base_url=OH_BASE_URL): """ Send an email to individual users or in bulk. To learn more about Open Humans OAuth2 projects, go to: https://www.openhumans.org/direct-sharing/oauth2-features/ :param subj...

[ "def", "message", "(", "subject", ",", "message", ",", "access_token", ",", "all_members", "=", "False", ",", "project_member_ids", "=", "None", ",", "base_url", "=", "OH_BASE_URL", ")", ":", "url", "=", "urlparse", ".", "urljoin", "(", "base_url", ",", "'...

48.147059

0.000599

def atlasdb_renew_peer( peer_hostport, now, con=None, path=None ): """ Renew a peer's discovery time """ with AtlasDBOpen(con=con, path=path) as dbcon: if now is None: now = time.time() sql = "UPDATE peers SET discovery_time = ? WHERE peer_hostport = ?;" args = (now,...

[ "def", "atlasdb_renew_peer", "(", "peer_hostport", ",", "now", ",", "con", "=", "None", ",", "path", "=", "None", ")", ":", "with", "AtlasDBOpen", "(", "con", "=", "con", ",", "path", "=", "path", ")", "as", "dbcon", ":", "if", "now", "is", "None", ...

27.75

0.010893

def compile(node, uri, filename=None, default_filters=None, buffer_filters=None, imports=None, future_imports=None, source_encoding=None, generate_magic_comment=True, disable_u...

[ "def", "compile", "(", "node", ",", "uri", ",", "filename", "=", "None", ",", "default_filters", "=", "None", ",", "buffer_filters", "=", "None", ",", "imports", "=", "None", ",", "future_imports", "=", "None", ",", "source_encoding", "=", "None", ",", "...

41.162791

0.00883

def _parse_lines(self, diff_lines): """ Given the diff lines output from `git diff` for a particular source file, return a tuple of `(ADDED_LINES, DELETED_LINES)` where `ADDED_LINES` and `DELETED_LINES` are lists of line numbers added/deleted respectively. Raises a `Git...

[ "def", "_parse_lines", "(", "self", ",", "diff_lines", ")", ":", "added_lines", "=", "[", "]", "deleted_lines", "=", "[", "]", "current_line_new", "=", "None", "current_line_old", "=", "None", "for", "line", "in", "diff_lines", ":", "# If this is the start of th...

35.463768

0.000795

def _selectedBlockNumbers(self): """Return selected block numbers and tuple (startBlockNumber, endBlockNumber) """ startBlock, endBlock = self._selectedBlocks() return startBlock.blockNumber(), endBlock.blockNumber()

[ "def", "_selectedBlockNumbers", "(", "self", ")", ":", "startBlock", ",", "endBlock", "=", "self", ".", "_selectedBlocks", "(", ")", "return", "startBlock", ".", "blockNumber", "(", ")", ",", "endBlock", ".", "blockNumber", "(", ")" ]

48.8

0.012097

def json(self, *, # type: ignore loads: Callable[[Any], Any]=json.loads) -> None: """Return parsed JSON data. .. versionadded:: 0.22 """ return loads(self.data)

[ "def", "json", "(", "self", ",", "*", ",", "# type: ignore", "loads", ":", "Callable", "[", "[", "Any", "]", ",", "Any", "]", "=", "json", ".", "loads", ")", "->", "None", ":", "return", "loads", "(", "self", ".", "data", ")" ]

28.714286

0.024155

def get_cert_contents(kwargs): """Builds parameters with server cert file contents. Args: kwargs(dict): The keyword args passed to ensure_server_cert_exists, optionally containing the paths to the cert, key and chain files. Returns: dict: A dictionary containing the appropriate...

[ "def", "get_cert_contents", "(", "kwargs", ")", ":", "paths", "=", "{", "\"certificate\"", ":", "kwargs", ".", "get", "(", "\"path_to_certificate\"", ")", ",", "\"private_key\"", ":", "kwargs", ".", "get", "(", "\"path_to_private_key\"", ")", ",", "\"chain\"", ...

29.254902

0.000649

def read_address(self, ip_address): ''' a method to retrieve details about an elastic ip address associated with account on AWS :param ip_address: string with elastic ipv4 address on ec2 :return: dictionary with ip address details ''' t...

[ "def", "read_address", "(", "self", ",", "ip_address", ")", ":", "title", "=", "'%s.read_address'", "%", "self", ".", "__class__", ".", "__name__", "# validate inputs", "input_fields", "=", "{", "'ip_address'", ":", "ip_address", "}", "for", "key", ",", "value...

34.282609

0.008631

def p_expression_eql(self, p): 'expression : expression EQL expression' p[0] = Eql(p[1], p[3], lineno=p.lineno(1)) p.set_lineno(0, p.lineno(1))

[ "def", "p_expression_eql", "(", "self", ",", "p", ")", ":", "p", "[", "0", "]", "=", "Eql", "(", "p", "[", "1", "]", ",", "p", "[", "3", "]", ",", "lineno", "=", "p", ".", "lineno", "(", "1", ")", ")", "p", ".", "set_lineno", "(", "0", ",...

41

0.011976

def _page_to_text(page): """Extract the text from a page. Args: page: a unicode string Returns: a unicode string """ # text start tag looks like "<text ..otherstuff>" start_pos = page.find(u"<text") assert start_pos != -1 end_tag_pos = page.find(u">", start_pos) assert end_tag_pos != -1 end...

[ "def", "_page_to_text", "(", "page", ")", ":", "# text start tag looks like \"<text ..otherstuff>\"", "start_pos", "=", "page", ".", "find", "(", "u\"<text\"", ")", "assert", "start_pos", "!=", "-", "1", "end_tag_pos", "=", "page", ".", "find", "(", "u\">\"", ",...

23.777778

0.024719

def plot_voight_painting(painting, palette='colorblind', flank='right', ax=None, height_factor=0.01): """Plot a painting of shared haplotype prefixes. Parameters ---------- painting : array_like, int, shape (n_variants, n_haplotypes) Painting array. ax : axes, optio...

[ "def", "plot_voight_painting", "(", "painting", ",", "palette", "=", "'colorblind'", ",", "flank", "=", "'right'", ",", "ax", "=", "None", ",", "height_factor", "=", "0.01", ")", ":", "import", "seaborn", "as", "sns", "from", "matplotlib", ".", "colors", "...

28.901961

0.000656

def sentence2freqt(docgraph, root, successors=None, include_pos=False, escape_func=FREQT_ESCAPE_FUNC): """convert a sentence subgraph into a FREQT string.""" if successors is None: successors = sorted_bfs_successors(docgraph, root) if root in successors: # root node has children...

[ "def", "sentence2freqt", "(", "docgraph", ",", "root", ",", "successors", "=", "None", ",", "include_pos", "=", "False", ",", "escape_func", "=", "FREQT_ESCAPE_FUNC", ")", ":", "if", "successors", "is", "None", ":", "successors", "=", "sorted_bfs_successors", ...

52

0.001111

def ascolumn(x, dtype = None): '''Convert ``x`` into a ``column``-type ``numpy.ndarray``.''' x = asarray(x, dtype) return x if len(x.shape) >= 2 else x.reshape(len(x),1)

[ "def", "ascolumn", "(", "x", ",", "dtype", "=", "None", ")", ":", "x", "=", "asarray", "(", "x", ",", "dtype", ")", "return", "x", "if", "len", "(", "x", ".", "shape", ")", ">=", "2", "else", "x", ".", "reshape", "(", "len", "(", "x", ")", ...

45.25

0.021739

def draw_pdf(f, arg, bound, bins=100, scale=1.0, density=True, normed_pdf=False, ax=None, **kwds): """ draw pdf with given argument and bounds. **Arguments** * **f** your pdf. The first argument is assumed to be independent variable * **arg** argument can be tuple o...

[ "def", "draw_pdf", "(", "f", ",", "arg", ",", "bound", ",", "bins", "=", "100", ",", "scale", "=", "1.0", ",", "density", "=", "True", ",", "normed_pdf", "=", "False", ",", "ax", "=", "None", ",", "*", "*", "kwds", ")", ":", "edges", "=", "np",...

30.1875

0.002006

def function(self,p): """ Return a square-wave grating (alternating black and white bars). """ return np.around( 0.5 + 0.5*np.sin(pi*(p.duty_cycle-0.5)) + 0.5*np.sin(p.frequency*2*pi*self.pattern_y + p.phase))

[ "def", "function", "(", "self", ",", "p", ")", ":", "return", "np", ".", "around", "(", "0.5", "+", "0.5", "*", "np", ".", "sin", "(", "pi", "*", "(", "p", ".", "duty_cycle", "-", "0.5", ")", ")", "+", "0.5", "*", "np", ".", "sin", "(", "p"...

33.75

0.01083

def get_repos(self): """ :calls: `GET /teams/:id/repos <http://developer.github.com/v3/orgs/teams>`_ :rtype: :class:`github.PaginatedList.PaginatedList` of :class:`github.Repository.Repository` """ return github.PaginatedList.PaginatedList( github.Repository.Repositor...

[ "def", "get_repos", "(", "self", ")", ":", "return", "github", ".", "PaginatedList", ".", "PaginatedList", "(", "github", ".", "Repository", ".", "Repository", ",", "self", ".", "_requester", ",", "self", ".", "url", "+", "\"/repos\"", ",", "None", ")" ]

36.454545

0.009732

def delete_user(iam_client, user, mfa_serial = None, keep_user = False, terminated_groups = []): """ Delete IAM user :param iam_client: :param user: :param mfa_serial: :param keep_user: :param terminated_groups: :return: """ errors = [] printInfo('Deleting user %s...' % user...

[ "def", "delete_user", "(", "iam_client", ",", "user", ",", "mfa_serial", "=", "None", ",", "keep_user", "=", "False", ",", "terminated_groups", "=", "[", "]", ")", ":", "errors", "=", "[", "]", "printInfo", "(", "'Deleting user %s...'", "%", "user", ")", ...

38.321739

0.011281

def in6_ifaceidtomac(ifaceid): # TODO: finish commenting function behavior """ Extract the mac address from provided iface ID. Iface ID is provided in printable format ("XXXX:XXFF:FEXX:XXXX", eventually compressed). None is returned on error. """ try: ifaceid = inet_pton(socket.AF_INET...

[ "def", "in6_ifaceidtomac", "(", "ifaceid", ")", ":", "# TODO: finish commenting function behavior", "try", ":", "ifaceid", "=", "inet_pton", "(", "socket", ".", "AF_INET6", ",", "\"::\"", "+", "ifaceid", ")", "[", "8", ":", "16", "]", "except", ":", "return", ...

37.55

0.011688

def _deactivate(self): """Remove the fetcher from cache and mark it not active.""" self.cache.remove_fetcher(self) if self.active: self._deactivated()

[ "def", "_deactivate", "(", "self", ")", ":", "self", ".", "cache", ".", "remove_fetcher", "(", "self", ")", "if", "self", ".", "active", ":", "self", ".", "_deactivated", "(", ")" ]

36.4

0.010753

def add_nic(self, instance_id, net_id): """Add a Network Interface Controller""" #TODO: upgrade with port_id and fixed_ip in future self.client.servers.interface_attach( instance_id, None, net_id, None) return True

[ "def", "add_nic", "(", "self", ",", "instance_id", ",", "net_id", ")", ":", "#TODO: upgrade with port_id and fixed_ip in future", "self", ".", "client", ".", "servers", ".", "interface_attach", "(", "instance_id", ",", "None", ",", "net_id", ",", "None", ")", "r...

42.166667

0.011628

def update(self, content): """Enumerates the bytes of the supplied bytearray and updates the CRC-64. No return value. """ for byte in content: self._crc64 = (self._crc64 >> 8) ^ self._lookup_table[(self._crc64 & 0xff) ^ byte]

[ "def", "update", "(", "self", ",", "content", ")", ":", "for", "byte", "in", "content", ":", "self", ".", "_crc64", "=", "(", "self", ".", "_crc64", ">>", "8", ")", "^", "self", ".", "_lookup_table", "[", "(", "self", ".", "_crc64", "&", "0xff", ...

38.142857

0.014652

def removeHtmlTags(self, text): """convert bad tags into HTML identities""" sb = [] text = self.removeHtmlComments(text) bits = text.split(u'<') sb.append(bits.pop(0)) tagstack = [] tablestack = tagstack for x in bits: m = _tagPattern.match(x) if not m: continue slash, t, params, brace, res...

[ "def", "removeHtmlTags", "(", "self", ",", "text", ")", ":", "sb", "=", "[", "]", "text", "=", "self", ".", "removeHtmlComments", "(", "text", ")", "bits", "=", "text", ".", "split", "(", "u'<'", ")", "sb", ".", "append", "(", "bits", ".", "pop", ...

25.673267

0.037133

def create_widget(self): """ Create the underlying widget. """ d = self.declaration self.widget = RelativeLayout(self.get_context(), None, d.style)

[ "def", "create_widget", "(", "self", ")", ":", "d", "=", "self", ".", "declaration", "self", ".", "widget", "=", "RelativeLayout", "(", "self", ".", "get_context", "(", ")", ",", "None", ",", "d", ".", "style", ")" ]

29.166667

0.011111

def MAPGenoToTrans(parsedGTF,feature): """ Gets all positions of all bases in an exon :param df: a Pandas dataframe with 'start','end', and 'strand' information for each entry. df must contain 'seqname','feature','start','end','strand','frame','gene_id', 'transcript_id','exo...

[ "def", "MAPGenoToTrans", "(", "parsedGTF", ",", "feature", ")", ":", "GenTransMap", "=", "parsedGTF", "[", "parsedGTF", "[", "\"feature\"", "]", "==", "feature", "]", "def", "getExonsPositions", "(", "df", ")", ":", "start", "=", "int", "(", "df", "[", "...

41.4

0.02439

def setHint(self, text): """ Sets the hint to the inputed text. The same hint will be used for all editors in this widget. :param text | <str> """ texts = nativestring(text).split(' ') for i, text in enumerate(texts): ...

[ "def", "setHint", "(", "self", ",", "text", ")", ":", "texts", "=", "nativestring", "(", "text", ")", ".", "split", "(", "' '", ")", "for", "i", ",", "text", "in", "enumerate", "(", "texts", ")", ":", "editor", "=", "self", ".", "editorAt", "(", ...

28.733333

0.011236

def galprop_ringkey(self, **kwargs): """ return the sourcekey for galprop input maps : specifies the component and ring """ kwargs_copy = self.base_dict.copy() kwargs_copy.update(**kwargs) self._replace_none(kwargs_copy) try: return NameFactory.galprop...

[ "def", "galprop_ringkey", "(", "self", ",", "*", "*", "kwargs", ")", ":", "kwargs_copy", "=", "self", ".", "base_dict", ".", "copy", "(", ")", "kwargs_copy", ".", "update", "(", "*", "*", "kwargs", ")", "self", ".", "_replace_none", "(", "kwargs_copy", ...

39.7

0.009852

def call_method(self, method): """ Calls a blocking method in an executor, in order to preserve the non-blocking behaviour If ``method`` is a coroutine, yields from it and returns, no need to execute in in an executor. :param method: The method or coroutine to be called (with n...

[ "def", "call_method", "(", "self", ",", "method", ")", ":", "if", "self", ".", "_method_is_async_generator", "(", "method", ")", ":", "result", "=", "yield", "method", "(", ")", "else", ":", "result", "=", "yield", "self", ".", "executor", ".", "submit",...

37.2

0.008741

def verify_callable_argspec(callable_, expected_args=Argument.ignore, expect_starargs=Argument.ignore, expect_kwargs=Argument.ignore): """ Checks the callable_ to make sure that it satisfies the given expectations. expec...

[ "def", "verify_callable_argspec", "(", "callable_", ",", "expected_args", "=", "Argument", ".", "ignore", ",", "expect_starargs", "=", "Argument", ".", "ignore", ",", "expect_kwargs", "=", "Argument", ".", "ignore", ")", ":", "if", "not", "callable", "(", "cal...

29.8125

0.000406

def AddStatEntry(self, stat_entry, timestamp): """Registers stat entry at a given timestamp.""" if timestamp in self._stat_entries: message = ("Duplicated stat entry write for path '%s' of type '%s' at " "timestamp '%s'. Old: %s. New: %s.") message %= ("/".join(self._components), s...

[ "def", "AddStatEntry", "(", "self", ",", "stat_entry", ",", "timestamp", ")", ":", "if", "timestamp", "in", "self", ".", "_stat_entries", ":", "message", "=", "(", "\"Duplicated stat entry write for path '%s' of type '%s' at \"", "\"timestamp '%s'. Old: %s. New: %s.\"", "...

39.157895

0.009186

def init_model_based_tags(self, model): """Initializing the model based memory and NIC information tags. It should be called just after instantiating a RIBCL object. ribcl = ribcl.RIBCLOperations(host, login, password, timeout, port, cacert=cacert...

[ "def", "init_model_based_tags", "(", "self", ",", "model", ")", ":", "self", ".", "model", "=", "model", "if", "'G7'", "in", "self", ".", "model", ":", "self", ".", "MEMORY_SIZE_TAG", "=", "\"MEMORY_SIZE\"", "self", ".", "MEMORY_SIZE_NOT_PRESENT_TAG", "=", "...

39.913043

0.002128

def get_widget(self, page, language, fallback=Textarea): """Given the name of a placeholder return a `Widget` subclass like Textarea or TextInput.""" import sys PY3 = sys.version > '3' is_string = type(self.widget) == type(str()) if not PY3: is_string = type(s...

[ "def", "get_widget", "(", "self", ",", "page", ",", "language", ",", "fallback", "=", "Textarea", ")", ":", "import", "sys", "PY3", "=", "sys", ".", "version", ">", "'3'", "is_string", "=", "type", "(", "self", ".", "widget", ")", "==", "type", "(", ...

35.882353

0.009585

def approved_funds(pronac, dt): """ Verifica se o valor total de um projeto é um outlier em relação aos projetos do mesmo seguimento cultural Dataframes: planilha_orcamentaria """ funds_df = data.approved_funds_by_projects project = ( funds_df .loc[funds_df['PRONAC'] == ...

[ "def", "approved_funds", "(", "pronac", ",", "dt", ")", ":", "funds_df", "=", "data", ".", "approved_funds_by_projects", "project", "=", "(", "funds_df", ".", "loc", "[", "funds_df", "[", "'PRONAC'", "]", "==", "pronac", "]", ")", "project", "=", "project"...

27.935484

0.001116

def read_namespaced_job_status(self, name, namespace, **kwargs): # noqa: E501 """read_namespaced_job_status # noqa: E501 read status of the specified Job # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=...

[ "def", "read_namespaced_job_status", "(", "self", ",", "name", ",", "namespace", ",", "*", "*", "kwargs", ")", ":", "# noqa: E501", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'async_req'", ")", ":", "return...

50.086957

0.001704

def snippet(code, locations, sep=' | ', colmark=('-', '^'), context=5): '''Given a code and list of locations, convert to snippet lines. return will include line number, a separator (``sep``), then line contents. At most ``context`` lines are shown before each location line. A...

[ "def", "snippet", "(", "code", ",", "locations", ",", "sep", "=", "' | '", ",", "colmark", "=", "(", "'-'", ",", "'^'", ")", ",", "context", "=", "5", ")", ":", "if", "not", "locations", ":", "return", "[", "]", "lines", "=", "code", ".", "split"...

40.129032

0.00157

def unregisterThread(self, name): """ Unregister the Thread registered under the given name. Make sure that the given Thread is properly stopped, or that a reference is kept in another place. Once unregistered, this class will not keep any other references to the Thread. Parameters ---------- name: st...

[ "def", "unregisterThread", "(", "self", ",", "name", ")", ":", "if", "not", "name", "in", "self", ".", "thread_list", ":", "self", ".", "logger", ".", "error", "(", "\"Thread {0} is not registered!\"", ".", "format", "(", "name", ")", ")", "raise", "Except...

31.842105

0.028892

def _determine_function_name_type(node, config=None): """Determine the name type whose regex the a function's name should match. :param node: A function node. :type node: astroid.node_classes.NodeNG :param config: Configuration from which to pull additional property classes. :type config: :class:`o...

[ "def", "_determine_function_name_type", "(", "node", ",", "config", "=", "None", ")", ":", "property_classes", ",", "property_names", "=", "_get_properties", "(", "config", ")", "if", "not", "node", ".", "is_method", "(", ")", ":", "return", "\"function\"", "i...

38.416667

0.002116

def _get_frag_constr_table(self, start_atom=None, predefined_table=None, use_lookup=None, bond_dict=None): """Create a construction table for a Zmatrix. A construction table is basically a Zmatrix without the values for the bond lenghts, angles and dihedrals. ...

[ "def", "_get_frag_constr_table", "(", "self", ",", "start_atom", "=", "None", ",", "predefined_table", "=", "None", ",", "use_lookup", "=", "None", ",", "bond_dict", "=", "None", ")", ":", "if", "use_lookup", "is", "None", ":", "use_lookup", "=", "settings",...

44.271429

0.000473

def fix(args): """ %prog fix bedfile > newbedfile Fix non-standard bed files. One typical problem is start > end. """ p = OptionParser(fix.__doc__) p.add_option("--minspan", default=0, type="int", help="Enforce minimum span [default: %default]") p.set_outfile() opts, ar...

[ "def", "fix", "(", "args", ")", ":", "p", "=", "OptionParser", "(", "fix", ".", "__doc__", ")", "p", ".", "add_option", "(", "\"--minspan\"", ",", "default", "=", "0", ",", "type", "=", "\"int\"", ",", "help", "=", "\"Enforce minimum span [default: %defaul...

27.893617

0.001474

def cooccurrence(quantized_image, labels, scale_i=3, scale_j=0): """Calculates co-occurrence matrices for all the objects in the image. Return an array P of shape (nobjects, nlevels, nlevels) such that P[o, :, :] is the cooccurence matrix for object o. quantized_image -- a numpy array of integer type ...

[ "def", "cooccurrence", "(", "quantized_image", ",", "labels", ",", "scale_i", "=", "3", ",", "scale_j", "=", "0", ")", ":", "labels", "=", "labels", ".", "astype", "(", "int", ")", "nlevels", "=", "quantized_image", ".", "max", "(", ")", "+", "1", "n...

44.311475

0.002172

def _skw_matches_comparator(kw0, kw1): """Compare 2 single keywords objects. First by the number of their spans (ie. how many times they were found), if it is equal it compares them by lenghts of their labels. """ def compare(a, b): return (a > b) - (a < b) list_comparison = compare(le...

[ "def", "_skw_matches_comparator", "(", "kw0", ",", "kw1", ")", ":", "def", "compare", "(", "a", ",", "b", ")", ":", "return", "(", "a", ">", "b", ")", "-", "(", "a", "<", "b", ")", "list_comparison", "=", "compare", "(", "len", "(", "kw1", "[", ...

35.857143

0.001294

def num_orifices(FlowPlant, RatioVCOrifice, HeadLossOrifice, DiamOrifice): """Return the number of orifices.""" #Inputs do not need to be checked here because they are checked by #functions this function calls. return np.ceil(area_orifice(HeadLossOrifice, RatioVCOrifice, ...

[ "def", "num_orifices", "(", "FlowPlant", ",", "RatioVCOrifice", ",", "HeadLossOrifice", ",", "DiamOrifice", ")", ":", "#Inputs do not need to be checked here because they are checked by", "#functions this function calls.", "return", "np", ".", "ceil", "(", "area_orifice", "("...

56.142857

0.012531

def fetch(args): """ %prog fetch "query" OR %prog fetch queries.txt Please provide a UniProt compatible `query` to retrieve data. If `query` contains spaces, please remember to "quote" it. You can also specify a `filename` which contains queries, one per line. Follow this syntax <...

[ "def", "fetch", "(", "args", ")", ":", "import", "re", "import", "csv", "p", "=", "OptionParser", "(", "fetch", ".", "__doc__", ")", "p", ".", "add_option", "(", "\"--format\"", ",", "default", "=", "\"tab\"", ",", "choices", "=", "valid_formats", ",", ...

34.679245

0.002116

def _generateModel1(numCategories): """ Generate the initial, first order, and second order transition probabilities for 'model1'. For this model, we generate the following set of sequences: 0-10-15 (1X) 0-11-16 (1X) 0-12-17 (1X) 0-13-18 (1X) 0-14-19 (1X) 1-10-20 (1X) 1-11-21 (1X) 1-12-22 (1X)...

[ "def", "_generateModel1", "(", "numCategories", ")", ":", "# --------------------------------------------------------------------", "# Initial probabilities, 0 and 1 equally likely", "initProb", "=", "numpy", ".", "zeros", "(", "numCategories", ")", "initProb", "[", "0", "]", ...

32.184

0.018327

def _len_lcs(x, y): """Returns the length of the Longest Common Subsequence between two seqs. Source: http://www.algorithmist.com/index.php/Longest_Common_Subsequence Args: x: sequence of words y: sequence of words Returns integer: Length of LCS between x and y """ table = _lcs(x, y) n, m =...

[ "def", "_len_lcs", "(", "x", ",", "y", ")", ":", "table", "=", "_lcs", "(", "x", ",", "y", ")", "n", ",", "m", "=", "len", "(", "x", ")", ",", "len", "(", "y", ")", "return", "table", "[", "n", ",", "m", "]" ]

22.8

0.014045

def make_context_aware(func, numargs): """ Check if given function has no more arguments than given. If so, wrap it into another function that takes extra argument and drops it. Used to support user providing callback functions that are not context aware. """ try: if inspect.ismethod(fun...

[ "def", "make_context_aware", "(", "func", ",", "numargs", ")", ":", "try", ":", "if", "inspect", ".", "ismethod", "(", "func", ")", ":", "arg_count", "=", "len", "(", "inspect", ".", "getargspec", "(", "func", ")", ".", "args", ")", "-", "1", "elif",...

33.8

0.002301

def _function_header(subpackage, func): """Generate the docstring of a function.""" args = inspect.formatargspec(*inspect.getfullargspec(func)) return "{name}{args}".format(name=_full_name(subpackage, func), args=args, )

[ "def", "_function_header", "(", "subpackage", ",", "func", ")", ":", "args", "=", "inspect", ".", "formatargspec", "(", "*", "inspect", ".", "getfullargspec", "(", "func", ")", ")", "return", "\"{name}{args}\"", ".", "format", "(", "name", "=", "_full_name",...

49.5

0.009934

def find_all_files(self): """ Find files including those in subrepositories. """ files = self.find_files() subrepo_files = ( posixpath.join(subrepo.location, filename) for subrepo in self.subrepos() for filename in subrepo.find_files() ) return itertools.chain(files, subrepo_files)

[ "def", "find_all_files", "(", "self", ")", ":", "files", "=", "self", ".", "find_files", "(", ")", "subrepo_files", "=", "(", "posixpath", ".", "join", "(", "subrepo", ".", "location", ",", "filename", ")", "for", "subrepo", "in", "self", ".", "subrepos"...

26.818182

0.039344