kejian/codesearchnet-python-rebalanced · Datasets at Hugging Face

text stringlengths 75 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 0.18
def add_head(self, path: str, handler: _WebHandler, kwargs: Any) -> AbstractRoute: """ Shortcut for add_route with method HEAD """ return self.add_route(hdrs.METH_HEAD, path, handler, kwargs)	[ "def", "add_head", "(", "self", ",", "path", ":", "str", ",", "handler", ":", "_WebHandler", ",", "", "", "kwargs", ":", "Any", ")", "->", "AbstractRoute", ":", "return", "self", ".", "add_route", "(", "hdrs", ".", "METH_HEAD", ",", "path", ",", "h...	39.833333	0.012295
def transactional_tasklet(func, args, kwds, options): """The async version of @ndb.transaction. Will return the result of the wrapped function as a Future. """ from . import tasklets func = tasklets.tasklet(func) return transactional_async.wrapped_decorator(func, args, kwds, options)	[ "def", "transactional_tasklet", "(", "func", ",", "args", ",", "kwds", ",", "", "", "options", ")", ":", "from", ".", "import", "tasklets", "func", "=", "tasklets", ".", "tasklet", "(", "func", ")", "return", "transactional_async", ".", "wrapped_decorator"...	36.75	0.016611
def wait_new_conf(self): """Send a HTTP request to the satellite (GET /wait_new_conf) :return: True if wait new conf, otherwise False :rtype: bool """ logger.debug("Wait new configuration for %s, %s %s", self.name, self.alive, self.reachable) return self.con.get('_wait_n...	[ "def", "wait_new_conf", "(", "self", ")", ":", "logger", ".", "debug", "(", "\"Wait new configuration for %s, %s %s\"", ",", "self", ".", "name", ",", "self", ".", "alive", ",", "self", ".", "reachable", ")", "return", "self", ".", "con", ".", "get", "(", ...	40.25	0.009119
def give_str(self): """ Give string representation of the callable. """ args = self._args[:] kwargs = self._kwargs return self._give_str(args, kwargs)	[ "def", "give_str", "(", "self", ")", ":", "args", "=", "self", ".", "_args", "[", ":", "]", "kwargs", "=", "self", ".", "_kwargs", "return", "self", ".", "_give_str", "(", "args", ",", "kwargs", ")" ]	28	0.009901
def frames_to_tc(self, frames): """Converts frames back to timecode :returns str: the string representation of the current time code """ if frames == 0: return 0, 0, 0, 0 ffps = float(self._framerate) if self.drop_frame: # Number of frames to d...	[ "def", "frames_to_tc", "(", "self", ",", "frames", ")", ":", "if", "frames", "==", "0", ":", "return", "0", ",", "0", ",", "0", ",", "0", "ffps", "=", "float", "(", "self", ".", "_framerate", ")", "if", "self", ".", "drop_frame", ":", "# Number of ...	34.518519	0.001043
def _rem_id_from_keys(self, pk, conn=None): ''' _rem_id_from_keys - Remove primary key from table internal ''' if conn is None: conn = self._get_connection() conn.srem(self._get_ids_key(), pk)	[ "def", "_rem_id_from_keys", "(", "self", ",", "pk", ",", "conn", "=", "None", ")", ":", "if", "conn", "is", "None", ":", "conn", "=", "self", ".", "_get_connection", "(", ")", "conn", ".", "srem", "(", "self", ".", "_get_ids_key", "(", ")", ",", "p...	25.25	0.043062
def _handle_request_error(self, orig_request, error, start_response): """Handle a request error, converting it to a WSGI response. Args: orig_request: An ApiRequest, the original request from the user. error: A RequestError containing information about the error. start_response: A function wi...	[ "def", "_handle_request_error", "(", "self", ",", "orig_request", ",", "error", ",", "start_response", ")", ":", "headers", "=", "[", "(", "'Content-Type'", ",", "'application/json'", ")", "]", "status_code", "=", "error", ".", "status_code", "(", ")", "body",...	43.428571	0.001073
def prepare(args): """ %prog prepare countfolder families Parse list of count files and group per family into families folder. """ p = OptionParser(prepare.__doc__) opts, args = p.parse_args(args) if len(args) != 2: sys.exit(not p.print_help()) counts, families = args coun...	[ "def", "prepare", "(", "args", ")", ":", "p", "=", "OptionParser", "(", "prepare", ".", "__doc__", ")", "opts", ",", "args", "=", "p", ".", "parse_args", "(", "args", ")", "if", "len", "(", "args", ")", "!=", "2", ":", "sys", ".", "exit", "(", ...	31.111111	0.001154
def initSchd_5_to_6(self): """ Initialize second(and last) tariff schedule :class:`~ekmmeters.SerialBlock`. """ self.m_schd_5_to_6["reserved_30"] = [6, FieldType.Hex, ScaleType.No, "", 0, False, False] self.m_schd_5_to_6["Schedule_5_Period_1_Hour"] = [2, FieldType.Int, ScaleType.No, "", 0, False...	[ "def", "initSchd_5_to_6", "(", "self", ")", ":", "self", ".", "m_schd_5_to_6", "[", "\"reserved_30\"", "]", "=", "[", "6", ",", "FieldType", ".", "Hex", ",", "ScaleType", ".", "No", ",", "\"\"", ",", "0", ",", "False", ",", "False", "]", "self", ".",...	100.685714	0.009837
def update(self, fname): """ Adds a handler to save to a file. Includes debug stuff. """ ltfh = FileHandler(fname) self._log.addHandler(ltfh)	[ "def", "update", "(", "self", ",", "fname", ")", ":", "ltfh", "=", "FileHandler", "(", "fname", ")", "self", ".", "_log", ".", "addHandler", "(", "ltfh", ")" ]	29.333333	0.01105
def SaveData(self, raw_data): """Store the raw data as our configuration.""" if self.filename is None: raise IOError("Unknown filename") logging.info("Writing back configuration to file %s", self.filename) # Ensure intermediate directories exist try: os.makedirs(os.path.dirname(self.fil...	[ "def", "SaveData", "(", "self", ",", "raw_data", ")", ":", "if", "self", ".", "filename", "is", "None", ":", "raise", "IOError", "(", "\"Unknown filename\"", ")", "logging", ".", "info", "(", "\"Writing back configuration to file %s\"", ",", "self", ".", "file...	35.909091	0.01233
def prepare(data): ''' Try to get current process ready to unpickle process object ''' if 'name' in data: process.current_process().name = data['name'] if 'authkey' in data: process.current_process().authkey = data['authkey'] if 'log_to_stderr' in data and data['log_to_stderr']...	[ "def", "prepare", "(", "data", ")", ":", "if", "'name'", "in", "data", ":", "process", ".", "current_process", "(", ")", ".", "name", "=", "data", "[", "'name'", "]", "if", "'authkey'", "in", "data", ":", "process", ".", "current_process", "(", ")", ...	27.333333	0.000841
def subscribe(self, py3_module, trigger_action, subsystem): """ Subscribe the given module to the given udev subsystem. Here we will lazy load the monitor if necessary and return success or failure based on the availability of pyudev. """ if self.pyudev_available: ...	[ "def", "subscribe", "(", "self", ",", "py3_module", ",", "trigger_action", ",", "subsystem", ")", ":", "if", "self", ".", "pyudev_available", ":", "# lazy load the udev monitor", "if", "self", ".", "udev_observer", "is", "None", ":", "self", ".", "_setup_pyudev_...	41.758621	0.002421
def convert_item_to_command_line_arg(self, action, key, value): """Converts a config file or env var key + value to a list of commandline args to append to the commandline. Args: action: The argparse Action object for this setting, or None if this config file setting...	[ "def", "convert_item_to_command_line_arg", "(", "self", ",", "action", ",", "key", ",", "value", ")", ":", "args", "=", "[", "]", "if", "action", "is", "None", ":", "command_line_key", "=", "self", ".", "get_command_line_key_for_unknown_config_file_setting", "(", ...	45.2	0.009528
def _make_default_header(self): """ Return a generic placeholder header based on the tables column count """ td_max = 0 for idx, tr in enumerate(self._tr_nodes): td_count = len(tr.contents.filter_tags(matches=ftag('td'))) if td_count > td_max: ...	[ "def", "_make_default_header", "(", "self", ")", ":", "td_max", "=", "0", "for", "idx", ",", "tr", "in", "enumerate", "(", "self", ".", "_tr_nodes", ")", ":", "td_count", "=", "len", "(", "tr", ".", "contents", ".", "filter_tags", "(", "matches", "=", ...	35.153846	0.010661
def add_number_widget(self, ref, x=1, value=1): """ Add Number Widget """ if ref not in self.widgets: widget = widgets.NumberWidget(screen=self, ref=ref, x=x, value=value) self.widgets[ref] = widget return self.widgets[ref]	[ "def", "add_number_widget", "(", "self", ",", "ref", ",", "x", "=", "1", ",", "value", "=", "1", ")", ":", "if", "ref", "not", "in", "self", ".", "widgets", ":", "widget", "=", "widgets", ".", "NumberWidget", "(", "screen", "=", "self", ",", "ref",...	38.571429	0.01087
def top_in(self, leaderboard_name, number, **options): ''' Retrieve members from the named leaderboard within a range from 1 to the number given. @param leaderboard_name [String] Name of the leaderboard. @param starting_rank [int] Starting rank (inclusive). @param ending_rank [i...	[ "def", "top_in", "(", "self", ",", "leaderboard_name", ",", "number", ",", "", "", "options", ")", ":", "return", "self", ".", "members_from_rank_range_in", "(", "leaderboard_name", ",", "1", ",", "number", ",", "", "", "options", ")" ]	51.416667	0.009554
def sendRequest(self, name, args): """sends a request to the peer""" (respEvt, id) = self.newResponseEvent() self.sendMessage({"id":id, "method":name, "params": args}) return respEvt	[ "def", "sendRequest", "(", "self", ",", "name", ",", "args", ")", ":", "(", "respEvt", ",", "id", ")", "=", "self", ".", "newResponseEvent", "(", ")", "self", ".", "sendMessage", "(", "{", "\"id\"", ":", "id", ",", "\"method\"", ":", "name", ",", "...	42	0.018692
def currencies(self): """Get all currencies with non-zero values""" return [m.currency.code for m in self.monies() if m.amount]	[ "def", "currencies", "(", "self", ")", ":", "return", "[", "m", ".", "currency", ".", "code", "for", "m", "in", "self", ".", "monies", "(", ")", "if", "m", ".", "amount", "]" ]	47	0.013986
def get_device(self, id=None): """Returns details of either the first or specified device :param int id: Identifier of desired device. If not given, first device found will be returned :returns tuple: Device ID, Device Address, Firmware Version """ if id is None: ...	[ "def", "get_device", "(", "self", ",", "id", "=", "None", ")", ":", "if", "id", "is", "None", ":", "if", "not", "self", ".", "devices", ":", "raise", "ValueError", "(", "'No default device for %s'", "%", "self", ".", "hardware_id", ")", "id", ",", "(",...	35	0.002317
def server_bind(self): """Override of TCPServer.server_bind() that tracks bind-time assigned random ports.""" TCPServer.server_bind(self) _, self.server_port = self.socket.getsockname()[:2]	[ "def", "server_bind", "(", "self", ")", ":", "TCPServer", ".", "server_bind", "(", "self", ")", "_", ",", "self", ".", "server_port", "=", "self", ".", "socket", ".", "getsockname", "(", ")", "[", ":", "2", "]" ]	49.5	0.00995
def node_to_xml(node, output=sys.stdout, nsmap=None): """ Convert a Node object into a pretty .xml file without keeping everything in memory. If you just want the string representation use tostring(node). :param node: a Node-compatible object (ElementTree nodes are fine) :param nsmap: if given,...	[ "def", "node_to_xml", "(", "node", ",", "output", "=", "sys", ".", "stdout", ",", "nsmap", "=", "None", ")", ":", "if", "nsmap", ":", "for", "ns", ",", "prefix", "in", "nsmap", ".", "items", "(", ")", ":", "if", "prefix", ":", "node", "[", "'xmln...	33.555556	0.00161
def set_condition(self, condition, condition_instr=None): """ Defines the condition which decides how the basic block exits :param condition: :type condition: :param condition_instr: If the 'condition' argument is a Variable, then\ condition_instr is None, else,...	[ "def", "set_condition", "(", "self", ",", "condition", ",", "condition_instr", "=", "None", ")", ":", "assert", "(", "isinstance", "(", "condition", ",", "Numeric", ")", ")", "if", "condition_instr", "is", "not", "None", ":", "assert", "(", "isinstance", "...	47.703704	0.002283
def next(self): """Advances to and returns the next token or returns EndOfFile""" self.index += 1 t = self.peek() if not self.depth: self._cut() return t	[ "def", "next", "(", "self", ")", ":", "self", ".", "index", "+=", "1", "t", "=", "self", ".", "peek", "(", ")", "if", "not", "self", ".", "depth", ":", "self", ".", "_cut", "(", ")", "return", "t" ]	28.428571	0.009756
def get_workflow_status_of(brain_or_object, state_var="review_state"): """Get the current workflow status of the given brain or context. :param brain_or_object: A single catalog brain or content object :type brain_or_object: ATContentType/DexterityContentType/CatalogBrain :param state_var: The name of ...	[ "def", "get_workflow_status_of", "(", "brain_or_object", ",", "state_var", "=", "\"review_state\"", ")", ":", "# Try to get the state from the catalog brain first", "if", "is_brain", "(", "brain_or_object", ")", ":", "if", "state_var", "in", "brain_or_object", ".", "schem...	40.421053	0.001272
def create(self): """Create this cluster. For example: .. literalinclude:: snippets.py :start-after: [START bigtable_create_cluster] :end-before: [END bigtable_create_cluster] .. note:: Uses the ``project``, ``instance`` and ``cluster_id`` on the ...	[ "def", "create", "(", "self", ")", ":", "client", "=", "self", ".", "_instance", ".", "_client", "cluster_pb", "=", "self", ".", "_to_pb", "(", ")", "return", "client", ".", "instance_admin_client", ".", "create_cluster", "(", "self", ".", "_instance", "."...	30.65625	0.001976
def execute(self, sql, parameters = None, cursorClass = DictCursor, quiet = False, locked = False, do_commit = True): """Execute SQL query. This uses DictCursor by default.""" i = 0 errcode = 0 caughte = None cursor = None if sql.find(";") != -1 or sql.find("\\G") != -1: # Catches some injections rais...	[ "def", "execute", "(", "self", ",", "sql", ",", "parameters", "=", "None", ",", "cursorClass", "=", "DictCursor", ",", "quiet", "=", "False", ",", "locked", "=", "False", ",", "do_commit", "=", "True", ")", ":", "i", "=", "0", "errcode", "=", "0", ...	30.440678	0.040453
def _validate_units(self, has_units, key, value): """Validate fields with `units` key in schema set to True. The rule's arguments are validated against this schema: {'type': 'boolean'} """ if has_units: if isinstance(self.test.units, dict): required_u...	[ "def", "_validate_units", "(", "self", ",", "has_units", ",", "key", ",", "value", ")", ":", "if", "has_units", ":", "if", "isinstance", "(", "self", ".", "test", ".", "units", ",", "dict", ")", ":", "required_units", "=", "self", ".", "test", ".", "...	46.857143	0.001992
def _clean_error_msg(self, msg): """converts a Powershell CLIXML message to a more human readable string """ # TODO prepare unit test, beautify code # if the msg does not start with this, return it as is if msg.startswith(b"#< CLIXML\r\n"): # for proper xml, we need t...	[ "def", "_clean_error_msg", "(", "self", ",", "msg", ")", ":", "# TODO prepare unit test, beautify code", "# if the msg does not start with this, return it as is", "if", "msg", ".", "startswith", "(", "b\"#< CLIXML\\r\\n\"", ")", ":", "# for proper xml, we need to remove the CLIXM...	49.388889	0.001103
def replace(self): """Replace index with a new one zero_downtime_index for safety and rollback """ with zero_downtime_index(self.alias_name, self.index_config()) as target_index: self.index_all(target_index)	[ "def", "replace", "(", "self", ")", ":", "with", "zero_downtime_index", "(", "self", ".", "alias_name", ",", "self", ".", "index_config", "(", ")", ")", "as", "target_index", ":", "self", ".", "index_all", "(", "target_index", ")" ]	41	0.011952
def build_disagg_matrix(bdata, bin_edges, sid, mon=Monitor): """ :param bdata: a dictionary of probabilities of no exceedence :param bin_edges: bin edges :param sid: site index :param mon: a Monitor instance :returns: a dictionary key -> matrix\|pmf for each key in bdata """ with mon('bui...	[ "def", "build_disagg_matrix", "(", "bdata", ",", "bin_edges", ",", "sid", ",", "mon", "=", "Monitor", ")", ":", "with", "mon", "(", "'build_disagg_matrix'", ")", ":", "mag_bins", ",", "dist_bins", ",", "lon_bins", ",", "lat_bins", ",", "eps_bins", "=", "bi...	43.8	0.000372
def import_and_wrap_deprecated(module_name, module_dict, warn_import=True): """ Usage: import_and_wrap_deprecated('conda.common.connection', locals()) # looks for conda.common.connection.__all__ """ if warn_import: deprecated_import(module_name) from importlib import import_...	[ "def", "import_and_wrap_deprecated", "(", "module_name", ",", "module_dict", ",", "warn_import", "=", "True", ")", ":", "if", "warn_import", ":", "deprecated_import", "(", "module_name", ")", "from", "importlib", "import", "import_module", "module", "=", "import_mod...	34.461538	0.002174
def copy_all_a(input_a, other_inputs, *kwargs): """Copy all readings in input a into the output. All other inputs are skipped so that after this function runs there are no readings left in any of the input walkers when the function finishes, even if it generated no output readings. Returns: ...	[ "def", "copy_all_a", "(", "input_a", ",", "", "other_inputs", ",", "", "*", "kwargs", ")", ":", "output", "=", "[", "]", "while", "input_a", ".", "count", "(", ")", ">", "0", ":", "output", ".", "append", "(", "input_a", ".", "pop", "(", ")", "...	26.210526	0.001938
def charge(self, cart, request): """ Use the Stripe token from the request and charge immediately. This view is invoked by the Javascript function `scope.charge()` delivered by `get_payment_request`. """ token_id = cart.extra['payment_extra_data']['token_id'] if L...	[ "def", "charge", "(", "self", ",", "cart", ",", "request", ")", ":", "token_id", "=", "cart", ".", "extra", "[", "'payment_extra_data'", "]", "[", "'token_id'", "]", "if", "LooseVersion", "(", "SHOP_VERSION", ")", "<", "LooseVersion", "(", "'0.11'", ")", ...	44.4	0.001889
def upload(self, fileobj, bucket, key, extra_args=None, subscribers=None): """Uploads a file to S3 :type fileobj: str or seekable file-like object :param fileobj: The name of a file to upload or a seekable file-like object to upload. It is recommended to use a filename because ...	[ "def", "upload", "(", "self", ",", "fileobj", ",", "bucket", ",", "key", ",", "extra_args", "=", "None", ",", "subscribers", "=", "None", ")", ":", "if", "extra_args", "is", "None", ":", "extra_args", "=", "{", "}", "if", "subscribers", "is", "None", ...	40	0.00122
def _assign_ascii_character(self, y_prev, y, y_next): # noqa for complexity '''Assign the character to be placed into the graph''' char = '?' if y_next > y and y_prev > y: char = '-' elif y_next < y and y_prev < y: char = '-' e...	[ "def", "_assign_ascii_character", "(", "self", ",", "y_prev", ",", "y", ",", "y_next", ")", ":", "# noqa for complexity", "char", "=", "'?'", "if", "y_next", ">", "y", "and", "y_prev", ">", "y", ":", "char", "=", "'-'", "elif", "y_next", "<", "y", "and...	32.958333	0.002457
def parallaxErrorSkyAvg(G, vmini, extension=0.0): """ Calculate the sky averaged parallax error from G and (V-I). Parameters ---------- G - Value(s) of G-band magnitude. vmini - Value(s) of (V-I) colour. Keywords -------- extension - Add this amount of years to the mission lifetime and scale t...	[ "def", "parallaxErrorSkyAvg", "(", "G", ",", "vmini", ",", "extension", "=", "0.0", ")", ":", "factor", "=", "errorScalingMissionLength", "(", "extension", ",", "-", "0.5", ")", "z", "=", "calcZ", "(", "G", ")", "return", "sqrt", "(", "-", "1.631", "+"...	23.521739	0.01421
def add_cluster( self, name, server=None, certificate_authority_data=None, **attrs): """Add a cluster to config.""" if self.cluster_exists(name): raise KubeConfError("Cluster with the given name already exists.") clusters = self.get_clusters...	[ "def", "add_cluster", "(", "self", ",", "name", ",", "server", "=", "None", ",", "certificate_authority_data", "=", "None", ",", "", "", "attrs", ")", ":", "if", "self", ".", "cluster_exists", "(", "name", ")", ":", "raise", "KubeConfError", "(", "\"Cl...	31.454545	0.008415
def JMS_to_array(C, sectors=None): """For a dictionary with JMS Wilson coefficients, return a dictionary of arrays.""" if sectors is None: wc_keys = wcxf.Basis['WET', 'JMS'].all_wcs else: try: wc_keys = [k for s in sectors for k in wcxf.Basis['WET', 'JMS'].sectors[s]] ...	[ "def", "JMS_to_array", "(", "C", ",", "sectors", "=", "None", ")", ":", "if", "sectors", "is", "None", ":", "wc_keys", "=", "wcxf", ".", "Basis", "[", "'WET'", ",", "'JMS'", "]", ".", "all_wcs", "else", ":", "try", ":", "wc_keys", "=", "[", "k", ...	35	0.002418
def preserve(method=None, result=True, fields=None): """Preserve fields in deposit. :param method: Function to execute. (Default: ``None``) :param result: If `True` returns the result of method execution, otherwise `self`. (Default: ``True``) :param fields: List of fields to preserve (default: ...	[ "def", "preserve", "(", "method", "=", "None", ",", "result", "=", "True", ",", "fields", "=", "None", ")", ":", "if", "method", "is", "None", ":", "return", "partial", "(", "preserve", ",", "result", "=", "result", ",", "fields", "=", "fields", ")",...	36.130435	0.001172
def add(lhs, rhs): """Returns element-wise sum of the input arrays with broadcasting. Equivalent to ``lhs + rhs``, ``mx.nd.broadcast_add(lhs, rhs)`` and ``mx.nd.broadcast_plus(lhs, rhs)`` when shapes of lhs and rhs do not match. If lhs.shape == rhs.shape, this is equivalent to ``mx.nd.elemwise_add(...	[ "def", "add", "(", "lhs", ",", "rhs", ")", ":", "# pylint: disable= no-member, protected-access", "if", "isinstance", "(", "lhs", ",", "NDArray", ")", "and", "isinstance", "(", "rhs", ",", "NDArray", ")", "and", "lhs", ".", "shape", "==", "rhs", ".", "shap...	29.927536	0.001406
def get_playcount(self): """Returns the number of plays on the network""" return _number( _extract( self._request(self.ws_prefix + ".getInfo", cacheable=True), "playcount" ) )	[ "def", "get_playcount", "(", "self", ")", ":", "return", "_number", "(", "_extract", "(", "self", ".", "_request", "(", "self", ".", "ws_prefix", "+", "\".getInfo\"", ",", "cacheable", "=", "True", ")", ",", "\"playcount\"", ")", ")" ]	29.125	0.0125
def get_conversion_rate(from_currency: str, to_currency: str) -> Decimal: """ Get conversion rate to use in exchange """ reverse_rate = False if to_currency == BASE_CURRENCY: # Fetch exchange rate for base currency and use 1 / rate for conversion rate_currency = from_currency ...	[ "def", "get_conversion_rate", "(", "from_currency", ":", "str", ",", "to_currency", ":", "str", ")", "->", "Decimal", ":", "reverse_rate", "=", "False", "if", "to_currency", "==", "BASE_CURRENCY", ":", "# Fetch exchange rate for base currency and use 1 / rate for conversi...	30.333333	0.001776
def _weight_generator(self, reviewers): """Compute a weight function for the given reviewers. Args: reviewers: a set of reviewers to compute weight function. Returns: a function computing a weight for a reviewer. """ scores = [r.anomalous_score for r in revi...	[ "def", "_weight_generator", "(", "self", ",", "reviewers", ")", ":", "scores", "=", "[", "r", ".", "anomalous_score", "for", "r", "in", "reviewers", "]", "mu", "=", "np", ".", "average", "(", "scores", ")", "sigma", "=", "np", ".", "std", "(", "score...	30.470588	0.001871
def _fit_orbit_mlogl(new_vxvv,vxvv,vxvv_err,pot,radec,lb, customsky,lb_to_customsky,pmllpmbb_to_customsky, tmockAA, ro,vo,obs): """The log likelihood for fitting an orbit""" #Use this _parse_args routine, which does forward and backward integration ...	[ "def", "_fit_orbit_mlogl", "(", "new_vxvv", ",", "vxvv", ",", "vxvv_err", ",", "pot", ",", "radec", ",", "lb", ",", "customsky", ",", "lb_to_customsky", ",", "pmllpmbb_to_customsky", ",", "tmockAA", ",", "ro", ",", "vo", ",", "obs", ")", ":", "#Use this _p...	53.846154	0.023615
def get_actor(self, username, email): """ Get actor for the statement. """ return Agent( name=username, mbox='mailto:{email}'.format(email=email), )	[ "def", "get_actor", "(", "self", ",", "username", ",", "email", ")", ":", "return", "Agent", "(", "name", "=", "username", ",", "mbox", "=", "'mailto:{email}'", ".", "format", "(", "email", "=", "email", ")", ",", ")" ]	25.625	0.009434
def get_group_index_sorter(group_index, ngroups): """ algos.groupsort_indexer implements `counting sort` and it is at least O(ngroups), where ngroups = prod(shape) shape = map(len, keys) that is, linear in the number of combinations (cartesian product) of unique values of groupby key...	[ "def", "get_group_index_sorter", "(", "group_index", ",", "ngroups", ")", ":", "count", "=", "len", "(", "group_index", ")", "alpha", "=", "0.0", "# taking complexities literally; there may be", "beta", "=", "1.0", "# some room for fine-tuning these parameters", "do_group...	46.12	0.00085
def _bashcomplete(cmd, prog_name, complete_var=None): """Internal handler for the bash completion support.""" if complete_var is None: complete_var = '_%s_COMPLETE' % (prog_name.replace('-', '_')).upper() complete_instr = os.environ.get(complete_var) if not complete_instr: return fr...	[ "def", "_bashcomplete", "(", "cmd", ",", "prog_name", ",", "complete_var", "=", "None", ")", ":", "if", "complete_var", "is", "None", ":", "complete_var", "=", "'_%s_COMPLETE'", "%", "(", "prog_name", ".", "replace", "(", "'-'", ",", "'_'", ")", ")", "."...	39.454545	0.002252
def unit_clause_assign(clause, model): """Return a single variable/value pair that makes clause true in the model, if possible. >>> unit_clause_assign(A\|B\|C, {A:True}) (None, None) >>> unit_clause_assign(B\|~C, {A:True}) (None, None) >>> unit_clause_assign(~A\|~B, {A:True}) (B, False) ...	[ "def", "unit_clause_assign", "(", "clause", ",", "model", ")", ":", "P", ",", "value", "=", "None", ",", "None", "for", "literal", "in", "disjuncts", "(", "clause", ")", ":", "sym", ",", "positive", "=", "inspect_literal", "(", "literal", ")", "if", "s...	32.857143	0.001408
def at(args, kwargs): # pylint: disable=C0103 ''' Add a job to the queue. The 'timespec' follows the format documented in the at(1) manpage. CLI Example: .. code-block:: bash salt '' at.at <timespec> <cmd> [tag=<tag>] [runas=<user>] salt '*' at.at 12:05am '/sbin/reboot' ...	[ "def", "at", "(", "", "args", ",", "", "*", "kwargs", ")", ":", "# pylint: disable=C0103", "# check args", "if", "len", "(", "args", ")", "<", "2", ":", "return", "{", "'jobs'", ":", "[", "]", "}", "# build job", "if", "'tag'", "in", "kwargs", ":",...	28.428571	0.00081
def add_warning (self, s, tag=None): """ Add a warning string. """ item = (tag, s) if item not in self.warnings and \ tag not in self.aggregate.config["ignorewarnings"]: self.warnings.append(item)	[ "def", "add_warning", "(", "self", ",", "s", ",", "tag", "=", "None", ")", ":", "item", "=", "(", "tag", ",", "s", ")", "if", "item", "not", "in", "self", ".", "warnings", "and", "tag", "not", "in", "self", ".", "aggregate", ".", "config", "[", ...	31.5	0.011583
def login(method): """Require user to login.""" def wrapper(args, *kwargs): crawler = args[0].crawler # args[0] is a NetEase object try: if os.path.isfile(cookie_path): with open(cookie_path, 'r') as cookie_file: cookie = cookie_file.read() ...	[ "def", "login", "(", "method", ")", ":", "def", "wrapper", "(", "", "args", ",", "", "*", "kwargs", ")", ":", "crawler", "=", "args", "[", "0", "]", ".", "crawler", "# args[0] is a NetEase object", "try", ":", "if", "os", ".", "path", ".", "isfile"...	34.2	0.001138
def valid_starter_settings(self): '''check starter settings''' if self.gasheli_settings.ignition_chan <= 0 or self.gasheli_settings.ignition_chan > 8: print("Invalid ignition channel %d" % self.gasheli_settings.ignition_chan) return False if self.gasheli_settings.starter_...	[ "def", "valid_starter_settings", "(", "self", ")", ":", "if", "self", ".", "gasheli_settings", ".", "ignition_chan", "<=", "0", "or", "self", ".", "gasheli_settings", ".", "ignition_chan", ">", "8", ":", "print", "(", "\"Invalid ignition channel %d\"", "%", "sel...	55	0.011928
def get_indented_block(prefix_lines): """Returns an integer. The return value is the number of lines that belong to block begun on the first line. Parameters ---------- prefix_lines : list of basestring pairs Each pair corresponds to a line of SHPAML source code. The first e...	[ "def", "get_indented_block", "(", "prefix_lines", ")", ":", "prefix", ",", "line", "=", "prefix_lines", "[", "0", "]", "len_prefix", "=", "len", "(", "prefix", ")", "# Find the first nonempty line with len(prefix) <= len(prefix)", "i", "=", "1", "while", "i", "<",...	27.966667	0.001152
def get_interface_detail_output_interface_actual_line_speed(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") get_interface_detail = ET.Element("get_interface_detail") config = get_interface_detail output = ET.SubElement(get_interface_detail, "outp...	[ "def", "get_interface_detail_output_interface_actual_line_speed", "(", "self", ",", "", "", "kwargs", ")", ":", "config", "=", "ET", ".", "Element", "(", "\"config\"", ")", "get_interface_detail", "=", "ET", ".", "Element", "(", "\"get_interface_detail\"", ")", ...	50.764706	0.002275
def cmd2list(cmd): ''' Executes a command through the operating system and returns the output as a list, or on error a string with the standard error. EXAMPLE: >>> from subprocess import Popen, PIPE >>> CMDout2array('ls -l') ''' p = Popen(cmd, stdout=PIPE, stderr=PIPE, shell=True) stdout, ...	[ "def", "cmd2list", "(", "cmd", ")", ":", "p", "=", "Popen", "(", "cmd", ",", "stdout", "=", "PIPE", ",", "stderr", "=", "PIPE", ",", "shell", "=", "True", ")", "stdout", ",", "stderr", "=", "p", ".", "communicate", "(", ")", "if", "p", ".", "re...	34.692308	0.019438
def calcRapRperi(self,args,*kwargs): """ NAME: calcRapRperi PURPOSE: calculate the apocenter and pericenter radii INPUT: Either: a) R,vR,vT,z,vz b) Orbit instance: initial condition used if that's it, orbit(t) ...	[ "def", "calcRapRperi", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "#Set up the actionAngleAxi object", "if", "isinstance", "(", "self", ".", "_pot", ",", "list", ")", ":", "thispot", "=", "[", "p", ".", "toPlanar", "(", ")", "for...	36.444444	0.016832
def entries(self): """Returns a list of all entries""" def add(x, y): return x + y try: return reduce(add, list(self.cache.values())) except: return []	[ "def", "entries", "(", "self", ")", ":", "def", "add", "(", "x", ",", "y", ")", ":", "return", "x", "+", "y", "try", ":", "return", "reduce", "(", "add", ",", "list", "(", "self", ".", "cache", ".", "values", "(", ")", ")", ")", "except", ":"...	26.5	0.013699
def transcribe(self, text, punctuation=True): """ Parameters: :param text: str: The text to be transcribed :param punctuation: bool: Retain punctuation This module attempts to reconstruct the approximate phonology of Old English. The algorithm first trie...	[ "def", "transcribe", "(", "self", ",", "text", ",", "punctuation", "=", "True", ")", ":", "if", "not", "punctuation", ":", "text", "=", "re", ".", "sub", "(", "r\"[\\.\\\";\\,\\:\\[\\]\\(\\)!&?‘]\", ", "\"", ", ", "t", "xt)", "", "text", "=", "text", "."...	38.381818	0.002309
def renamenodes(idf, fieldtype): """rename all the changed nodes""" renameds = [] for key in idf.model.dtls: for idfobject in idf.idfobjects[key]: for fieldvalue in idfobject.obj: if type(fieldvalue) is list: if fieldvalue not in renameds: ...	[ "def", "renamenodes", "(", "idf", ",", "fieldtype", ")", ":", "renameds", "=", "[", "]", "for", "key", "in", "idf", ".", "model", ".", "dtls", ":", "for", "idfobject", "in", "idf", ".", "idfobjects", "[", "key", "]", ":", "for", "fieldvalue", "in", ...	42.692308	0.000881
def _get_config_type(cla55: type) -> Optional[str]: """ Find the name (if any) that a subclass was registered under. We do this simply by iterating through the registry until we find it. """ # Special handling for pytorch RNN types: if cla55 == torch.nn.RNN: return "rnn" elif cla...	[ "def", "_get_config_type", "(", "cla55", ":", "type", ")", "->", "Optional", "[", "str", "]", ":", "# Special handling for pytorch RNN types:", "if", "cla55", "==", "torch", ".", "nn", ".", "RNN", ":", "return", "\"rnn\"", "elif", "cla55", "==", "torch", "."...	31.730769	0.001176
def genetic_algorithm(population, fitness_fn, ngen=1000, pmut=0.1): "[Fig. 4.8]" for i in range(ngen): new_population = [] for i in len(population): fitnesses = map(fitness_fn, population) p1, p2 = weighted_sample_with_replacement(population, fitnesses, 2) chi...	[ "def", "genetic_algorithm", "(", "population", ",", "fitness_fn", ",", "ngen", "=", "1000", ",", "pmut", "=", "0.1", ")", ":", "for", "i", "in", "range", "(", "ngen", ")", ":", "new_population", "=", "[", "]", "for", "i", "in", "len", "(", "populatio...	39.846154	0.001887
def run_experiment(self, qasm, backend='simulator', shots=1, name=None, seed=None, timeout=60, access_token=None, user_id=None): """ Execute an experiment """ if access_token: self.req.credential.set_token(access_token) if user_id: s...	[ "def", "run_experiment", "(", "self", ",", "qasm", ",", "backend", "=", "'simulator'", ",", "shots", "=", "1", ",", "name", "=", "None", ",", "seed", "=", "None", ",", "timeout", "=", "60", ",", "access_token", "=", "None", ",", "user_id", "=", "None...	44.650602	0.000792
def _get_block_result(chars_a, chars_b): """Get the first block from two character lists and compare If character list ``a`` begins with a digit, the :any:`_pop_digit` function is called on both lists to get blocks of all consecutive digits at the start of each list. If the length of the block retu...	[ "def", "_get_block_result", "(", "chars_a", ",", "chars_b", ")", ":", "logger", ".", "debug", "(", "'_get_block_result(%s, %s)'", ",", "chars_a", ",", "chars_b", ")", "first_is_digit", "=", "chars_a", "[", "0", "]", ".", "isdigit", "(", ")", "pop_func", "=",...	45.885714	0.00061
def _execute(self, line): """ Evaluate the line and print the result. """ output = self.app.output # WORKAROUND: Due to a bug in Jedi, the current directory is removed # from sys.path. See: https://github.com/davidhalter/jedi/issues/1148 if '' not in sys.path: ...	[ "def", "_execute", "(", "self", ",", "line", ")", ":", "output", "=", "self", ".", "app", ".", "output", "# WORKAROUND: Due to a bug in Jedi, the current directory is removed", "# from sys.path. See: https://github.com/davidhalter/jedi/issues/1148", "if", "''", "not", "in", ...	41.457143	0.001346
def _process_sample (self, ap1, ap2, ap3, triple, tflags): """We have computed one independent phase closure triple in one timeslot. """ # Frequency-resolved: np.divide (triple, np.abs (triple), triple) phase = np.angle (triple) self.ap_spec_stats_by_ddid[self.cur_ddid]...	[ "def", "_process_sample", "(", "self", ",", "ap1", ",", "ap2", ",", "ap3", ",", "triple", ",", "tflags", ")", ":", "# Frequency-resolved:", "np", ".", "divide", "(", "triple", ",", "np", ".", "abs", "(", "triple", ")", ",", "triple", ")", "phase", "=...	47.642857	0.021308
def patched(module_name): """import and return a named module with patches applied locally only this function returns a module after importing it in such as way that it will operate cooperatively, but not overriding the module globally. >>> green_httplib = patched("httplib") >>> # using green_http...	[ "def", "patched", "(", "module_name", ")", ":", "if", "module_name", "in", "_patchers", ":", "return", "_patched_copy", "(", "module_name", ",", "_patchers", "[", "module_name", "]", ")", "# grab the unpatched version of the module for posterity", "old_module", "=", "...	36.553191	0.000567
def convert(from_currency, to_currency, from_currency_price=1): """ convert from from_currency to to_currency using cached info """ get_cache() from_currency, to_currency = validate_currency(from_currency, to_currency) update_cache(from_currency, to_currency) return ccache[from_currency][to_currency]['value'] * fr...	[ "def", "convert", "(", "from_currency", ",", "to_currency", ",", "from_currency_price", "=", "1", ")", ":", "get_cache", "(", ")", "from_currency", ",", "to_currency", "=", "validate_currency", "(", "from_currency", ",", "to_currency", ")", "update_cache", "(", ...	55.333333	0.017804
def extract_docs(): """ Parses the nano.rpc.Client for methods that have a __doc_meta__ attribute and saves generated docs """ methods = [] def _key(entry): return sorted_entries = sorted(Client.__dict__.items(), key=lambda x: x[0]) tree = {} meta_key = '__doc_meta__' ...	[ "def", "extract_docs", "(", ")", ":", "methods", "=", "[", "]", "def", "_key", "(", "entry", ")", ":", "return", "sorted_entries", "=", "sorted", "(", "Client", ".", "__dict__", ".", "items", "(", ")", ",", "key", "=", "lambda", "x", ":", "x", "[",...	28.369048	0.000811
def index_lonlat_in_pixels(lon,lat,pixels,nside,sort=False,outside=-1): """ Find the indices of a set of angles into a set of pixels Parameters: ----------- pix : set of search pixels pixels : set of reference pixels Returns: -------- index : index into the reference pixels ...	[ "def", "index_lonlat_in_pixels", "(", "lon", ",", "lat", ",", "pixels", ",", "nside", ",", "sort", "=", "False", ",", "outside", "=", "-", "1", ")", ":", "pix", "=", "ang2pix", "(", "nside", ",", "lon", ",", "lat", ")", "return", "index_pix_in_pixels",...	25	0.028916
def _sendPostDict(post_dict): """ Send `post_dict` to the :attr:`.ALEPH_EXPORT_URL`. Args: post_dict (dict): dictionary from :class:`PostData.get_POST_data()` Returns: str: Reponse from webform. """ downer = Downloader() downer.headers["Referer"] = settings.EDEPOSIT_EXPORT_...	[ "def", "_sendPostDict", "(", "post_dict", ")", ":", "downer", "=", "Downloader", "(", ")", "downer", ".", "headers", "[", "\"Referer\"", "]", "=", "settings", ".", "EDEPOSIT_EXPORT_REFERER", "data", "=", "downer", ".", "download", "(", "settings", ".", "ALEP...	30.956522	0.001362
def _gather_buffer_space(): ''' Gather some system data and then calculate buffer space. Result is in bytes. ''' if HAS_PSUTIL and psutil.version_info >= (0, 6, 0): # Oh good, we have psutil. This will be quick. total_mem = psutil.virtual_memory().total else: # Avoid...	[ "def", "_gather_buffer_space", "(", ")", ":", "if", "HAS_PSUTIL", "and", "psutil", ".", "version_info", ">=", "(", "0", ",", "6", ",", "0", ")", ":", "# Oh good, we have psutil. This will be quick.", "total_mem", "=", "psutil", ".", "virtual_memory", "(", ")", ...	37.8	0.00129
def identify(self): """Update client metadata on the server and negotiate features. :returns: nsqd response data if there was feature negotiation, otherwise ``None`` """ self.send(nsq.identify({ # nsqd 0.2.28+ 'client_id': self.client_id, ...	[ "def", "identify", "(", "self", ")", ":", "self", ".", "send", "(", "nsq", ".", "identify", "(", "{", "# nsqd 0.2.28+", "'client_id'", ":", "self", ".", "client_id", ",", "'hostname'", ":", "self", ".", "hostname", ",", "# nsqd 0.2.19+", "'feature_negotiatio...	28.553846	0.001042
def json2pattern(s): """ Convert JSON format to a query pattern. Includes even mongo shell notation without quoted key names. """ # make valid JSON by wrapping field names in quotes s, _ = re.subn(r'([{,])\s([^,{\s\'"]+)\s:', ' \\1 "\\2" : ', s) # handle shell values that are not valid JS...	[ "def", "json2pattern", "(", "s", ")", ":", "# make valid JSON by wrapping field names in quotes", "s", ",", "_", "=", "re", ".", "subn", "(", "r'([{,])\\s([^,{\\s\\'\"]+)\\s:'", ",", "' \\\\1 \"\\\\2\" : '", ",", "s", ")", "# handle shell values that are not valid JSON", ...	40.611111	0.001337
def normalize_path(path, filetype=None, has_filetype=True): """ Convert dot-separated paths to directory paths Allows non-python files to be placed in the PYTHONPATH and be referenced using dot-notation instead of absolute or relative file-system paths. If a text file, named test.txt was placed in a p...	[ "def", "normalize_path", "(", "path", ",", "filetype", "=", "None", ",", "has_filetype", "=", "True", ")", ":", "if", "not", "isinstance", "(", "path", ",", "str", ")", ":", "return", "path", "if", "'.'", "in", "path", "and", "os", ".", "path", ".", ...	40.102041	0.000497
def uniqify(seq): """`Uniqify` a sequence, preserving order. A plain-vanilla version of itertools' `unique_everseen`. Example ------- >>> s = list('zyxabccabxyz') >>> uniqify(s) ['z', 'y', 'x', 'a', 'b', 'c' Returns ------- list """ if PY37: #...	[ "def", "uniqify", "(", "seq", ")", ":", "if", "PY37", ":", "# Credit: Raymond Hettinger\r", "return", "list", "(", "dict", ".", "fromkeys", "(", "seq", ")", ")", "else", ":", "# Credit: Dave Kirby\r", "# https://www.peterbe.com/plog/uniqifiers-benchmark\r", "seen", ...	25.730769	0.001441
def mysql_aes_encrypt(val, key): """Mysql AES encrypt value with secret key. :param val: Plain text value. :param key: The AES key. :returns: The encrypted AES value. """ assert isinstance(val, binary_type) or isinstance(val, text_type) assert isinstance(key, binary_type) or isinstance(key,...	[ "def", "mysql_aes_encrypt", "(", "val", ",", "key", ")", ":", "assert", "isinstance", "(", "val", ",", "binary_type", ")", "or", "isinstance", "(", "val", ",", "text_type", ")", "assert", "isinstance", "(", "key", ",", "binary_type", ")", "or", "isinstance...	34.142857	0.002037
def count_annotations(self) -> int: """Count the number of annotations in the database.""" return self.session.query(Namespace).filter(Namespace.is_annotation).count()	[ "def", "count_annotations", "(", "self", ")", "->", "int", ":", "return", "self", ".", "session", ".", "query", "(", "Namespace", ")", ".", "filter", "(", "Namespace", ".", "is_annotation", ")", ".", "count", "(", ")" ]	60.333333	0.016393
def restore_backup(path, backup_id): ''' .. versionadded:: 0.17.0 Restore a previous version of a file that was backed up using Salt's :ref:`file state backup <file-state-backups>` system. path The path on the minion to check for backups backup_id The numeric id for the backup ...	[ "def", "restore_backup", "(", "path", ",", "backup_id", ")", ":", "path", "=", "os", ".", "path", ".", "expanduser", "(", "path", ")", "# Note: This only supports minion backups, so this function will need to be", "# modified if/when master backups are implemented.", "ret", ...	31.55	0.000512
def clear(self): """ Removes all pending Jobs from the queue and return them in a list. This method does not call #Job.cancel() on any of the jobs. If you want that, use #cancel_all() or call it manually. """ with synchronized(self.__queue): jobs = self.__queue.snapshot() self._...	[ "def", "clear", "(", "self", ")", ":", "with", "synchronized", "(", "self", ".", "__queue", ")", ":", "jobs", "=", "self", ".", "__queue", ".", "snapshot", "(", ")", "self", ".", "__queue", ".", "clear", "(", ")", "return", "jobs" ]	30.909091	0.008571
def add_piper(self, piper, xtra=None, create=True, branch=None): """ Adds a ``Piper`` instance to this ``Dagger``, but only if the ``Piper`` is not already there. Optionally creates a new ``Piper`` if the "piper" argument is valid for the ``Piper`` constructor. Returns a ``tuple`` ...	[ "def", "add_piper", "(", "self", ",", "piper", ",", "xtra", "=", "None", ",", "create", "=", "True", ",", "branch", "=", "None", ")", ":", "self", ".", "log", ".", "debug", "(", "'%s trying to add piper %s'", "%", "(", "repr", "(", "self", ")", ",", ...	51.6	0.008559
def dannots2dalignbed2dannotsagg(cfg): """ Aggregate annotations per query step#8 :param cfg: configuration dict """ datatmpd=cfg['datatmpd'] daannotp=f'{datatmpd}/08_dannot.tsv' cfg['daannotp']=daannotp dannotsaggp=cfg['dannotsaggp'] logging.info(basename(daannotp)) if...	[ "def", "dannots2dalignbed2dannotsagg", "(", "cfg", ")", ":", "datatmpd", "=", "cfg", "[", "'datatmpd'", "]", "daannotp", "=", "f'{datatmpd}/08_dannot.tsv'", "cfg", "[", "'daannotp'", "]", "=", "daannotp", "dannotsaggp", "=", "cfg", "[", "'dannotsaggp'", "]", "lo...	41.901639	0.023318
def json_2_location(json_obj): """ transform JSON obj coming from Ariane to ariane_clip3 object :param json_obj: the JSON obj coming from Ariane :return: ariane_clip3 Location object """ LOGGER.debug("Location.json_2_location") return Location(locid=json_obj['loca...	[ "def", "json_2_location", "(", "json_obj", ")", ":", "LOGGER", ".", "debug", "(", "\"Location.json_2_location\"", ")", "return", "Location", "(", "locid", "=", "json_obj", "[", "'locationID'", "]", ",", "name", "=", "json_obj", "[", "'locationName'", "]", ",",...	52.947368	0.001953
def _is_colorbar_heuristic(obj): """Find out if the object is in fact a color bar. """ # TODO come up with something more accurate here # Might help: # TODO Are the colorbars exactly the l.collections.PolyCollection's? try: aspect = float(obj.get_aspect()) except ValueError: ...	[ "def", "_is_colorbar_heuristic", "(", "obj", ")", ":", "# TODO come up with something more accurate here", "# Might help:", "# TODO Are the colorbars exactly the l.collections.PolyCollection's?", "try", ":", "aspect", "=", "float", "(", "obj", ".", "get_aspect", "(", ")", ")"...	33.833333	0.001198
def phrase_replace(self, replace_dict): """ Replace phrases with single token, mapping defined in replace_dict """ def r(tokens): text = ' ' + ' '.join(tokens) for k, v in replace_dict.items(): text = text.replace(...	[ "def", "phrase_replace", "(", "self", ",", "replace_dict", ")", ":", "def", "r", "(", "tokens", ")", ":", "text", "=", "' '", "+", "' '", ".", "join", "(", "tokens", ")", "for", "k", ",", "v", "in", "replace_dict", ".", "items", "(", ")", ":", "t...	35	0.009281
def raster_to_shape(raster): """Take a raster and return a polygon representing the outer edge.""" left = raster.bounds.left right = raster.bounds.right top = raster.bounds.top bottom = raster.bounds.bottom top_left = (left, top) top_right = (right, top) bottom_left = (left, bottom) ...	[ "def", "raster_to_shape", "(", "raster", ")", ":", "left", "=", "raster", ".", "bounds", ".", "left", "right", "=", "raster", ".", "bounds", ".", "right", "top", "=", "raster", ".", "bounds", ".", "top", "bottom", "=", "raster", ".", "bounds", ".", "...	28.8	0.002242
def build_comparators(*values_or_types): ''' All of the comparators that can be used for arguments. ''' comparators = [] for item in values_or_types: if isinstance(item, Comparator): comparators.append(item) elif isinstance(item, type): # If you are passing ar...	[ "def", "build_comparators", "(", "*", "values_or_types", ")", ":", "comparators", "=", "[", "]", "for", "item", "in", "values_or_types", ":", "if", "isinstance", "(", "item", ",", "Comparator", ")", ":", "comparators", ".", "append", "(", "item", ")", "eli...	34.2	0.001898
def visit(root: Node, visitor: Visitor, visitor_keys=None) -> Any: """Visit each node in an AST. `visit()` will walk through an AST using a depth first traversal, calling the visitor's enter methods at each node in the traversal, and calling the leave methods after visiting that node and all of its chi...	[ "def", "visit", "(", "root", ":", "Node", ",", "visitor", ":", "Visitor", ",", "visitor_keys", "=", "None", ")", "->", "Any", ":", "if", "not", "isinstance", "(", "root", ",", "Node", ")", ":", "raise", "TypeError", "(", "f\"Not an AST Node: {inspect(root)...	33.175182	0.001923
def freeze(plugins_directory): ''' Parameters ---------- plugins_directory : str Path to MicroDrop user plugins directory. Returns ------- list List of package strings corresponding to installed plugin versions. ''' # Check existing version (if any). package_vers...	[ "def", "freeze", "(", "plugins_directory", ")", ":", "# Check existing version (if any).", "package_versions", "=", "[", "]", "for", "plugin_path_i", "in", "plugins_directory", ".", "dirs", "(", ")", ":", "try", ":", "plugin_metadata", "=", "yaml", ".", "load", ...	32.8	0.00237
def recursive_input(input_label, type_class): '''Recursive user input prompter with type checker Args ---- type_class: type name of python type (e.g. float, no parentheses) Returns ------- output: str value entered by user converted to type `type_class` Note ---- ...	[ "def", "recursive_input", "(", "input_label", ",", "type_class", ")", ":", "import", "sys", "type_str", "=", "str", "(", "type_class", ")", ".", "split", "(", "\"'\"", ")", "[", "1", "]", "msg", "=", "'Enter {} (type `{}`): '", ".", "format", "(", "input_l...	24.842105	0.002039
def cross_lists(*sets): """Return the cross product of the arguments""" wheels = [iter(_) for _ in sets] digits = [next(it) for it in wheels] while True: yield digits[:] for i in range(len(digits)-1, -1, -1): try: digits[i] = next(wheels[i]) br...	[ "def", "cross_lists", "(", "*", "sets", ")", ":", "wheels", "=", "[", "iter", "(", "_", ")", "for", "_", "in", "sets", "]", "digits", "=", "[", "next", "(", "it", ")", "for", "it", "in", "wheels", "]", "while", "True", ":", "yield", "digits", "...	30.733333	0.002105
def register(linter): ''' Required method to auto register this checker ''' linter.register_checker(ResourceLeakageChecker(linter)) linter.register_checker(BlacklistedImportsChecker(linter)) linter.register_checker(MovedTestCaseClassChecker(linter)) linter.register_checker(BlacklistedLoaderM...	[ "def", "register", "(", "linter", ")", ":", "linter", ".", "register_checker", "(", "ResourceLeakageChecker", "(", "linter", ")", ")", "linter", ".", "register_checker", "(", "BlacklistedImportsChecker", "(", "linter", ")", ")", "linter", ".", "register_checker", ...	44.888889	0.002427
def convert_old_commands(commands, annotate=True): """Converts old-style package commands into equivalent Rex code.""" from rez.config import config from rez.utils.logging_ import print_debug def _repl(s): return s.replace('\\"', '"') def _encode(s): # this replaces all occurrances...	[ "def", "convert_old_commands", "(", "commands", ",", "annotate", "=", "True", ")", ":", "from", "rez", ".", "config", "import", "config", "from", "rez", ".", "utils", ".", "logging_", "import", "print_debug", "def", "_repl", "(", "s", ")", ":", "return", ...	38.513274	0.000672
def generate_validator_constructor(ns, data_type): """ Given a Stone data type, returns a string that can be used to construct the appropriate validation object in Python. """ dt, nullable_dt = unwrap_nullable(data_type) if is_list_type(dt): v = generate_func_call( 'bv.List',...	[ "def", "generate_validator_constructor", "(", "ns", ",", "data_type", ")", ":", "dt", ",", "nullable_dt", "=", "unwrap_nullable", "(", "data_type", ")", "if", "is_list_type", "(", "dt", ")", ":", "v", "=", "generate_func_call", "(", "'bv.List'", ",", "args", ...	33.923077	0.000441
def cli(env, package_keyname, keyword): """List package presets. .. Note:: Presets are set CPU / RAM / Disk allotments. You still need to specify required items. Some packages do not have presets. :: # List the presets for Bare Metal servers slcli order preset-list BARE_ME...	[ "def", "cli", "(", "env", ",", "package_keyname", ",", "keyword", ")", ":", "table", "=", "formatting", ".", "Table", "(", "COLUMNS", ")", "manager", "=", "ordering", ".", "OrderingManager", "(", "env", ".", "client", ")", "_filter", "=", "{", "}", "if...	28.548387	0.002186
def sysctl( state, host, name, value, persist=False, persist_file='/etc/sysctl.conf', ): ''' Edit sysctl configuration. + name: name of the sysctl setting to ensure + value: the value or list of values the sysctl should be + persist: whether to write this sysctl to the config + persist_...	[ "def", "sysctl", "(", "state", ",", "host", ",", "name", ",", "value", ",", "persist", "=", "False", ",", "persist_file", "=", "'/etc/sysctl.conf'", ",", ")", ":", "string_value", "=", "(", "' '", ".", "join", "(", "value", ")", "if", "isinstance", "("...	28.5	0.001131
def universal_transformer_depthwise_attention(layer_inputs, step, hparams, ffn_unit, attention_unit): """universal_transformer with depth-wise attention. It uses an attention me...	[ "def", "universal_transformer_depthwise_attention", "(", "layer_inputs", ",", "step", ",", "hparams", ",", "ffn_unit", ",", "attention_unit", ")", ":", "_", ",", "inputs", ",", "memory", "=", "layer_inputs", "all_states", "=", "memory", "# add depth signal", "if", ...	31.464286	0.009356
def singletrial(num_trials, skipstep=1): """ Single-trial cross-validation schema Use one trial for training, all others for testing. Parameters ---------- num_trials : int Total number of trials skipstep : int only use every `skipstep` trial for training Returns -----...	[ "def", "singletrial", "(", "num_trials", ",", "skipstep", "=", "1", ")", ":", "for", "t", "in", "range", "(", "0", ",", "num_trials", ",", "skipstep", ")", ":", "trainset", "=", "[", "t", "]", "testset", "=", "[", "i", "for", "i", "in", "range", ...	29.173913	0.001443
def parse_swag_config_options(config): """Ensures that options passed to the backend are valid.""" options = {} for key, val in config.items(): if key.startswith('swag.backend.'): options[key[12:]] = val if key.startswith('swag.'): options[key[5:]] = val if optio...	[ "def", "parse_swag_config_options", "(", "config", ")", ":", "options", "=", "{", "}", "for", "key", ",", "val", "in", "config", ".", "items", "(", ")", ":", "if", "key", ".", "startswith", "(", "'swag.backend.'", ")", ":", "options", "[", "key", "[", ...	38.666667	0.001684
def standardised_euclidean(x, y, sigma=_mock_ones): """Euclidean distance standardised against a vector of standard deviations per coordinate. ..math:: D(x, y) = \sqrt{\sum_i \frac{(x_i - y_i)2}{v_i}} """ result = 0.0 for i in range(x.shape[0]): result += ((x[i] - y[i]) 2) ...	[ "def", "standardised_euclidean", "(", "x", ",", "y", ",", "sigma", "=", "_mock_ones", ")", ":", "result", "=", "0.0", "for", "i", "in", "range", "(", "x", ".", "shape", "[", "0", "]", ")", ":", "result", "+=", "(", "(", "x", "[", "i", "]", "-",...	28.916667	0.00838

def add_head(self, path: str, handler: _WebHandler, **kwargs: Any) -> AbstractRoute: """ Shortcut for add_route with method HEAD """ return self.add_route(hdrs.METH_HEAD, path, handler, **kwargs)

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def transactional_tasklet(func, args, kwds, **options): """The async version of @ndb.transaction. Will return the result of the wrapped function as a Future. """ from . import tasklets func = tasklets.tasklet(func) return transactional_async.wrapped_decorator(func, args, kwds, **options)

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def wait_new_conf(self): """Send a HTTP request to the satellite (GET /wait_new_conf) :return: True if wait new conf, otherwise False :rtype: bool """ logger.debug("Wait new configuration for %s, %s %s", self.name, self.alive, self.reachable) return self.con.get('_wait_n...

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def give_str(self): """ Give string representation of the callable. """ args = self._args[:] kwargs = self._kwargs return self._give_str(args, kwargs)

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def frames_to_tc(self, frames): """Converts frames back to timecode :returns str: the string representation of the current time code """ if frames == 0: return 0, 0, 0, 0 ffps = float(self._framerate) if self.drop_frame: # Number of frames to d...

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def _rem_id_from_keys(self, pk, conn=None): ''' _rem_id_from_keys - Remove primary key from table internal ''' if conn is None: conn = self._get_connection() conn.srem(self._get_ids_key(), pk)

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def _handle_request_error(self, orig_request, error, start_response): """Handle a request error, converting it to a WSGI response. Args: orig_request: An ApiRequest, the original request from the user. error: A RequestError containing information about the error. start_response: A function wi...

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def prepare(args): """ %prog prepare countfolder families Parse list of count files and group per family into families folder. """ p = OptionParser(prepare.__doc__) opts, args = p.parse_args(args) if len(args) != 2: sys.exit(not p.print_help()) counts, families = args coun...

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def initSchd_5_to_6(self): """ Initialize second(and last) tariff schedule :class:`~ekmmeters.SerialBlock`. """ self.m_schd_5_to_6["reserved_30"] = [6, FieldType.Hex, ScaleType.No, "", 0, False, False] self.m_schd_5_to_6["Schedule_5_Period_1_Hour"] = [2, FieldType.Int, ScaleType.No, "", 0, False...

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def update(self, fname): """ Adds a handler to save to a file. Includes debug stuff. """ ltfh = FileHandler(fname) self._log.addHandler(ltfh)

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def SaveData(self, raw_data): """Store the raw data as our configuration.""" if self.filename is None: raise IOError("Unknown filename") logging.info("Writing back configuration to file %s", self.filename) # Ensure intermediate directories exist try: os.makedirs(os.path.dirname(self.fil...

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def prepare(data): ''' Try to get current process ready to unpickle process object ''' if 'name' in data: process.current_process().name = data['name'] if 'authkey' in data: process.current_process().authkey = data['authkey'] if 'log_to_stderr' in data and data['log_to_stderr']...

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def subscribe(self, py3_module, trigger_action, subsystem): """ Subscribe the given module to the given udev subsystem. Here we will lazy load the monitor if necessary and return success or failure based on the availability of pyudev. """ if self.pyudev_available: ...

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def convert_item_to_command_line_arg(self, action, key, value): """Converts a config file or env var key + value to a list of commandline args to append to the commandline. Args: action: The argparse Action object for this setting, or None if this config file setting...

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def _make_default_header(self): """ Return a generic placeholder header based on the tables column count """ td_max = 0 for idx, tr in enumerate(self._tr_nodes): td_count = len(tr.contents.filter_tags(matches=ftag('td'))) if td_count > td_max: ...

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def add_number_widget(self, ref, x=1, value=1): """ Add Number Widget """ if ref not in self.widgets: widget = widgets.NumberWidget(screen=self, ref=ref, x=x, value=value) self.widgets[ref] = widget return self.widgets[ref]

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def top_in(self, leaderboard_name, number, **options): ''' Retrieve members from the named leaderboard within a range from 1 to the number given. @param leaderboard_name [String] Name of the leaderboard. @param starting_rank [int] Starting rank (inclusive). @param ending_rank [i...

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def sendRequest(self, name, args): """sends a request to the peer""" (respEvt, id) = self.newResponseEvent() self.sendMessage({"id":id, "method":name, "params": args}) return respEvt

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def currencies(self): """Get all currencies with non-zero values""" return [m.currency.code for m in self.monies() if m.amount]

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def get_device(self, id=None): """Returns details of either the first or specified device :param int id: Identifier of desired device. If not given, first device found will be returned :returns tuple: Device ID, Device Address, Firmware Version """ if id is None: ...

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def server_bind(self): """Override of TCPServer.server_bind() that tracks bind-time assigned random ports.""" TCPServer.server_bind(self) _, self.server_port = self.socket.getsockname()[:2]

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def node_to_xml(node, output=sys.stdout, nsmap=None): """ Convert a Node object into a pretty .xml file without keeping everything in memory. If you just want the string representation use tostring(node). :param node: a Node-compatible object (ElementTree nodes are fine) :param nsmap: if given,...

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def set_condition(self, condition, condition_instr=None): """ Defines the condition which decides how the basic block exits :param condition: :type condition: :param condition_instr: If the 'condition' argument is a Variable, then\ condition_instr is None, else,...

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def next(self): """Advances to and returns the next token or returns EndOfFile""" self.index += 1 t = self.peek() if not self.depth: self._cut() return t

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def get_workflow_status_of(brain_or_object, state_var="review_state"): """Get the current workflow status of the given brain or context. :param brain_or_object: A single catalog brain or content object :type brain_or_object: ATContentType/DexterityContentType/CatalogBrain :param state_var: The name of ...

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def create(self): """Create this cluster. For example: .. literalinclude:: snippets.py :start-after: [START bigtable_create_cluster] :end-before: [END bigtable_create_cluster] .. note:: Uses the ``project``, ``instance`` and ``cluster_id`` on the ...

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def execute(self, sql, parameters = None, cursorClass = DictCursor, quiet = False, locked = False, do_commit = True): """Execute SQL query. This uses DictCursor by default.""" i = 0 errcode = 0 caughte = None cursor = None if sql.find(";") != -1 or sql.find("\\G") != -1: # Catches some injections rais...

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def _validate_units(self, has_units, key, value): """Validate fields with `units` key in schema set to True. The rule's arguments are validated against this schema: {'type': 'boolean'} """ if has_units: if isinstance(self.test.units, dict): required_u...

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def _clean_error_msg(self, msg): """converts a Powershell CLIXML message to a more human readable string """ # TODO prepare unit test, beautify code # if the msg does not start with this, return it as is if msg.startswith(b"#< CLIXML\r\n"): # for proper xml, we need t...

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def replace(self): """Replace index with a new one zero_downtime_index for safety and rollback """ with zero_downtime_index(self.alias_name, self.index_config()) as target_index: self.index_all(target_index)

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def build_disagg_matrix(bdata, bin_edges, sid, mon=Monitor): """ :param bdata: a dictionary of probabilities of no exceedence :param bin_edges: bin edges :param sid: site index :param mon: a Monitor instance :returns: a dictionary key -> matrix|pmf for each key in bdata """ with mon('bui...

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def import_and_wrap_deprecated(module_name, module_dict, warn_import=True): """ Usage: import_and_wrap_deprecated('conda.common.connection', locals()) # looks for conda.common.connection.__all__ """ if warn_import: deprecated_import(module_name) from importlib import import_...

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def copy_all_a(input_a, *other_inputs, **kwargs): """Copy all readings in input a into the output. All other inputs are skipped so that after this function runs there are no readings left in any of the input walkers when the function finishes, even if it generated no output readings. Returns: ...

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def charge(self, cart, request): """ Use the Stripe token from the request and charge immediately. This view is invoked by the Javascript function `scope.charge()` delivered by `get_payment_request`. """ token_id = cart.extra['payment_extra_data']['token_id'] if L...

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def upload(self, fileobj, bucket, key, extra_args=None, subscribers=None): """Uploads a file to S3 :type fileobj: str or seekable file-like object :param fileobj: The name of a file to upload or a seekable file-like object to upload. It is recommended to use a filename because ...

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def _assign_ascii_character(self, y_prev, y, y_next): # noqa for complexity '''Assign the character to be placed into the graph''' char = '?' if y_next > y and y_prev > y: char = '-' elif y_next < y and y_prev < y: char = '-' e...

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def parallaxErrorSkyAvg(G, vmini, extension=0.0): """ Calculate the sky averaged parallax error from G and (V-I). Parameters ---------- G - Value(s) of G-band magnitude. vmini - Value(s) of (V-I) colour. Keywords -------- extension - Add this amount of years to the mission lifetime and scale t...

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def add_cluster( self, name, server=None, certificate_authority_data=None, **attrs): """Add a cluster to config.""" if self.cluster_exists(name): raise KubeConfError("Cluster with the given name already exists.") clusters = self.get_clusters...

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def JMS_to_array(C, sectors=None): """For a dictionary with JMS Wilson coefficients, return a dictionary of arrays.""" if sectors is None: wc_keys = wcxf.Basis['WET', 'JMS'].all_wcs else: try: wc_keys = [k for s in sectors for k in wcxf.Basis['WET', 'JMS'].sectors[s]] ...

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def preserve(method=None, result=True, fields=None): """Preserve fields in deposit. :param method: Function to execute. (Default: ``None``) :param result: If `True` returns the result of method execution, otherwise `self`. (Default: ``True``) :param fields: List of fields to preserve (default: ...

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def add(lhs, rhs): """Returns element-wise sum of the input arrays with broadcasting. Equivalent to ``lhs + rhs``, ``mx.nd.broadcast_add(lhs, rhs)`` and ``mx.nd.broadcast_plus(lhs, rhs)`` when shapes of lhs and rhs do not match. If lhs.shape == rhs.shape, this is equivalent to ``mx.nd.elemwise_add(...

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def get_playcount(self): """Returns the number of plays on the network""" return _number( _extract( self._request(self.ws_prefix + ".getInfo", cacheable=True), "playcount" ) )

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def get_conversion_rate(from_currency: str, to_currency: str) -> Decimal: """ Get conversion rate to use in exchange """ reverse_rate = False if to_currency == BASE_CURRENCY: # Fetch exchange rate for base currency and use 1 / rate for conversion rate_currency = from_currency ...

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def _weight_generator(self, reviewers): """Compute a weight function for the given reviewers. Args: reviewers: a set of reviewers to compute weight function. Returns: a function computing a weight for a reviewer. """ scores = [r.anomalous_score for r in revi...

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def _fit_orbit_mlogl(new_vxvv,vxvv,vxvv_err,pot,radec,lb, customsky,lb_to_customsky,pmllpmbb_to_customsky, tmockAA, ro,vo,obs): """The log likelihood for fitting an orbit""" #Use this _parse_args routine, which does forward and backward integration ...

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def get_actor(self, username, email): """ Get actor for the statement. """ return Agent( name=username, mbox='mailto:{email}'.format(email=email), )

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def get_group_index_sorter(group_index, ngroups): """ algos.groupsort_indexer implements `counting sort` and it is at least O(ngroups), where ngroups = prod(shape) shape = map(len, keys) that is, linear in the number of combinations (cartesian product) of unique values of groupby key...

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def _bashcomplete(cmd, prog_name, complete_var=None): """Internal handler for the bash completion support.""" if complete_var is None: complete_var = '_%s_COMPLETE' % (prog_name.replace('-', '_')).upper() complete_instr = os.environ.get(complete_var) if not complete_instr: return fr...

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def unit_clause_assign(clause, model): """Return a single variable/value pair that makes clause true in the model, if possible. >>> unit_clause_assign(A|B|C, {A:True}) (None, None) >>> unit_clause_assign(B|~C, {A:True}) (None, None) >>> unit_clause_assign(~A|~B, {A:True}) (B, False) ...

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def at(*args, **kwargs): # pylint: disable=C0103 ''' Add a job to the queue. The 'timespec' follows the format documented in the at(1) manpage. CLI Example: .. code-block:: bash salt '*' at.at <timespec> <cmd> [tag=<tag>] [runas=<user>] salt '*' at.at 12:05am '/sbin/reboot' ...

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def add_warning (self, s, tag=None): """ Add a warning string. """ item = (tag, s) if item not in self.warnings and \ tag not in self.aggregate.config["ignorewarnings"]: self.warnings.append(item)

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def login(method): """Require user to login.""" def wrapper(*args, **kwargs): crawler = args[0].crawler # args[0] is a NetEase object try: if os.path.isfile(cookie_path): with open(cookie_path, 'r') as cookie_file: cookie = cookie_file.read() ...

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def valid_starter_settings(self): '''check starter settings''' if self.gasheli_settings.ignition_chan <= 0 or self.gasheli_settings.ignition_chan > 8: print("Invalid ignition channel %d" % self.gasheli_settings.ignition_chan) return False if self.gasheli_settings.starter_...

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def get_indented_block(prefix_lines): """Returns an integer. The return value is the number of lines that belong to block begun on the first line. Parameters ---------- prefix_lines : list of basestring pairs Each pair corresponds to a line of SHPAML source code. The first e...

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def get_interface_detail_output_interface_actual_line_speed(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") get_interface_detail = ET.Element("get_interface_detail") config = get_interface_detail output = ET.SubElement(get_interface_detail, "outp...

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def cmd2list(cmd): ''' Executes a command through the operating system and returns the output as a list, or on error a string with the standard error. EXAMPLE: >>> from subprocess import Popen, PIPE >>> CMDout2array('ls -l') ''' p = Popen(cmd, stdout=PIPE, stderr=PIPE, shell=True) stdout, ...

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def calcRapRperi(self,*args,**kwargs): """ NAME: calcRapRperi PURPOSE: calculate the apocenter and pericenter radii INPUT: Either: a) R,vR,vT,z,vz b) Orbit instance: initial condition used if that's it, orbit(t) ...

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def entries(self): """Returns a list of all entries""" def add(x, y): return x + y try: return reduce(add, list(self.cache.values())) except: return []

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def transcribe(self, text, punctuation=True): """ Parameters: :param text: str: The text to be transcribed :param punctuation: bool: Retain punctuation This module attempts to reconstruct the approximate phonology of Old English. The algorithm first trie...

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def renamenodes(idf, fieldtype): """rename all the changed nodes""" renameds = [] for key in idf.model.dtls: for idfobject in idf.idfobjects[key]: for fieldvalue in idfobject.obj: if type(fieldvalue) is list: if fieldvalue not in renameds: ...

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def _get_config_type(cla55: type) -> Optional[str]: """ Find the name (if any) that a subclass was registered under. We do this simply by iterating through the registry until we find it. """ # Special handling for pytorch RNN types: if cla55 == torch.nn.RNN: return "rnn" elif cla...

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def genetic_algorithm(population, fitness_fn, ngen=1000, pmut=0.1): "[Fig. 4.8]" for i in range(ngen): new_population = [] for i in len(population): fitnesses = map(fitness_fn, population) p1, p2 = weighted_sample_with_replacement(population, fitnesses, 2) chi...

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def run_experiment(self, qasm, backend='simulator', shots=1, name=None, seed=None, timeout=60, access_token=None, user_id=None): """ Execute an experiment """ if access_token: self.req.credential.set_token(access_token) if user_id: s...

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def _get_block_result(chars_a, chars_b): """Get the first block from two character lists and compare If character list ``a`` begins with a digit, the :any:`_pop_digit` function is called on both lists to get blocks of all consecutive digits at the start of each list. If the length of the block retu...

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def _execute(self, line): """ Evaluate the line and print the result. """ output = self.app.output # WORKAROUND: Due to a bug in Jedi, the current directory is removed # from sys.path. See: https://github.com/davidhalter/jedi/issues/1148 if '' not in sys.path: ...

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def _process_sample (self, ap1, ap2, ap3, triple, tflags): """We have computed one independent phase closure triple in one timeslot. """ # Frequency-resolved: np.divide (triple, np.abs (triple), triple) phase = np.angle (triple) self.ap_spec_stats_by_ddid[self.cur_ddid]...

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def patched(module_name): """import and return a named module with patches applied locally only this function returns a module after importing it in such as way that it will operate cooperatively, but not overriding the module globally. >>> green_httplib = patched("httplib") >>> # using green_http...

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def convert(from_currency, to_currency, from_currency_price=1): """ convert from from_currency to to_currency using cached info """ get_cache() from_currency, to_currency = validate_currency(from_currency, to_currency) update_cache(from_currency, to_currency) return ccache[from_currency][to_currency]['value'] * fr...

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def extract_docs(): """ Parses the nano.rpc.Client for methods that have a __doc_meta__ attribute and saves generated docs """ methods = [] def _key(entry): return sorted_entries = sorted(Client.__dict__.items(), key=lambda x: x[0]) tree = {} meta_key = '__doc_meta__' ...

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def index_lonlat_in_pixels(lon,lat,pixels,nside,sort=False,outside=-1): """ Find the indices of a set of angles into a set of pixels Parameters: ----------- pix : set of search pixels pixels : set of reference pixels Returns: -------- index : index into the reference pixels ...

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def _sendPostDict(post_dict): """ Send `post_dict` to the :attr:`.ALEPH_EXPORT_URL`. Args: post_dict (dict): dictionary from :class:`PostData.get_POST_data()` Returns: str: Reponse from webform. """ downer = Downloader() downer.headers["Referer"] = settings.EDEPOSIT_EXPORT_...

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def _gather_buffer_space(): ''' Gather some system data and then calculate buffer space. Result is in bytes. ''' if HAS_PSUTIL and psutil.version_info >= (0, 6, 0): # Oh good, we have psutil. This will be quick. total_mem = psutil.virtual_memory().total else: # Avoid...

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def identify(self): """Update client metadata on the server and negotiate features. :returns: nsqd response data if there was feature negotiation, otherwise ``None`` """ self.send(nsq.identify({ # nsqd 0.2.28+ 'client_id': self.client_id, ...

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def json2pattern(s): """ Convert JSON format to a query pattern. Includes even mongo shell notation without quoted key names. """ # make valid JSON by wrapping field names in quotes s, _ = re.subn(r'([{,])\s*([^,{\s\'"]+)\s*:', ' \\1 "\\2" : ', s) # handle shell values that are not valid JS...

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def normalize_path(path, filetype=None, has_filetype=True): """ Convert dot-separated paths to directory paths Allows non-python files to be placed in the PYTHONPATH and be referenced using dot-notation instead of absolute or relative file-system paths. If a text file, named test.txt was placed in a p...

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def uniqify(seq): """`Uniqify` a sequence, preserving order. A plain-vanilla version of itertools' `unique_everseen`. Example ------- >>> s = list('zyxabccabxyz') >>> uniqify(s) ['z', 'y', 'x', 'a', 'b', 'c' Returns ------- list """ if PY37: #...

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def mysql_aes_encrypt(val, key): """Mysql AES encrypt value with secret key. :param val: Plain text value. :param key: The AES key. :returns: The encrypted AES value. """ assert isinstance(val, binary_type) or isinstance(val, text_type) assert isinstance(key, binary_type) or isinstance(key,...

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def count_annotations(self) -> int: """Count the number of annotations in the database.""" return self.session.query(Namespace).filter(Namespace.is_annotation).count()

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def restore_backup(path, backup_id): ''' .. versionadded:: 0.17.0 Restore a previous version of a file that was backed up using Salt's :ref:`file state backup <file-state-backups>` system. path The path on the minion to check for backups backup_id The numeric id for the backup ...

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def clear(self): """ Removes all pending Jobs from the queue and return them in a list. This method does **no**t call #Job.cancel() on any of the jobs. If you want that, use #cancel_all() or call it manually. """ with synchronized(self.__queue): jobs = self.__queue.snapshot() self._...

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def add_piper(self, piper, xtra=None, create=True, branch=None): """ Adds a ``Piper`` instance to this ``Dagger``, but only if the ``Piper`` is not already there. Optionally creates a new ``Piper`` if the "piper" argument is valid for the ``Piper`` constructor. Returns a ``tuple`` ...

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def dannots2dalignbed2dannotsagg(cfg): """ Aggregate annotations per query step#8 :param cfg: configuration dict """ datatmpd=cfg['datatmpd'] daannotp=f'{datatmpd}/08_dannot.tsv' cfg['daannotp']=daannotp dannotsaggp=cfg['dannotsaggp'] logging.info(basename(daannotp)) if...

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def json_2_location(json_obj): """ transform JSON obj coming from Ariane to ariane_clip3 object :param json_obj: the JSON obj coming from Ariane :return: ariane_clip3 Location object """ LOGGER.debug("Location.json_2_location") return Location(locid=json_obj['loca...

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def _is_colorbar_heuristic(obj): """Find out if the object is in fact a color bar. """ # TODO come up with something more accurate here # Might help: # TODO Are the colorbars exactly the l.collections.PolyCollection's? try: aspect = float(obj.get_aspect()) except ValueError: ...

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def phrase_replace(self, replace_dict): """ Replace phrases with single token, mapping defined in replace_dict """ def r(tokens): text = ' ' + ' '.join(tokens) for k, v in replace_dict.items(): text = text.replace(...

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def raster_to_shape(raster): """Take a raster and return a polygon representing the outer edge.""" left = raster.bounds.left right = raster.bounds.right top = raster.bounds.top bottom = raster.bounds.bottom top_left = (left, top) top_right = (right, top) bottom_left = (left, bottom) ...

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def build_comparators(*values_or_types): ''' All of the comparators that can be used for arguments. ''' comparators = [] for item in values_or_types: if isinstance(item, Comparator): comparators.append(item) elif isinstance(item, type): # If you are passing ar...

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def visit(root: Node, visitor: Visitor, visitor_keys=None) -> Any: """Visit each node in an AST. `visit()` will walk through an AST using a depth first traversal, calling the visitor's enter methods at each node in the traversal, and calling the leave methods after visiting that node and all of its chi...

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def freeze(plugins_directory): ''' Parameters ---------- plugins_directory : str Path to MicroDrop user plugins directory. Returns ------- list List of package strings corresponding to installed plugin versions. ''' # Check existing version (if any). package_vers...

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def recursive_input(input_label, type_class): '''Recursive user input prompter with type checker Args ---- type_class: type name of python type (e.g. float, no parentheses) Returns ------- output: str value entered by user converted to type `type_class` Note ---- ...

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def cross_lists(*sets): """Return the cross product of the arguments""" wheels = [iter(_) for _ in sets] digits = [next(it) for it in wheels] while True: yield digits[:] for i in range(len(digits)-1, -1, -1): try: digits[i] = next(wheels[i]) br...

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def register(linter): ''' Required method to auto register this checker ''' linter.register_checker(ResourceLeakageChecker(linter)) linter.register_checker(BlacklistedImportsChecker(linter)) linter.register_checker(MovedTestCaseClassChecker(linter)) linter.register_checker(BlacklistedLoaderM...

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def convert_old_commands(commands, annotate=True): """Converts old-style package commands into equivalent Rex code.""" from rez.config import config from rez.utils.logging_ import print_debug def _repl(s): return s.replace('\\"', '"') def _encode(s): # this replaces all occurrances...

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def generate_validator_constructor(ns, data_type): """ Given a Stone data type, returns a string that can be used to construct the appropriate validation object in Python. """ dt, nullable_dt = unwrap_nullable(data_type) if is_list_type(dt): v = generate_func_call( 'bv.List',...

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def cli(env, package_keyname, keyword): """List package presets. .. Note:: Presets are set CPU / RAM / Disk allotments. You still need to specify required items. Some packages do not have presets. :: # List the presets for Bare Metal servers slcli order preset-list BARE_ME...

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def sysctl( state, host, name, value, persist=False, persist_file='/etc/sysctl.conf', ): ''' Edit sysctl configuration. + name: name of the sysctl setting to ensure + value: the value or list of values the sysctl should be + persist: whether to write this sysctl to the config + persist_...

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def universal_transformer_depthwise_attention(layer_inputs, step, hparams, ffn_unit, attention_unit): """universal_transformer with depth-wise attention. It uses an attention me...

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def singletrial(num_trials, skipstep=1): """ Single-trial cross-validation schema Use one trial for training, all others for testing. Parameters ---------- num_trials : int Total number of trials skipstep : int only use every `skipstep` trial for training Returns -----...

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def parse_swag_config_options(config): """Ensures that options passed to the backend are valid.""" options = {} for key, val in config.items(): if key.startswith('swag.backend.'): options[key[12:]] = val if key.startswith('swag.'): options[key[5:]] = val if optio...

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def standardised_euclidean(x, y, sigma=_mock_ones): """Euclidean distance standardised against a vector of standard deviations per coordinate. ..math:: D(x, y) = \sqrt{\sum_i \frac{(x_i - y_i)**2}{v_i}} """ result = 0.0 for i in range(x.shape[0]): result += ((x[i] - y[i]) ** 2) ...

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