kejian/codesearchnet-python-rebalanced · Datasets at Hugging Face

text stringlengths 75 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 0.18
def create_new_scheme(self): """Creates a new color scheme with a custom name.""" names = self.get_option('names') custom_names = self.get_option('custom_names', []) # Get the available number this new color scheme counter = len(custom_names) - 1 custom_index = [int(n.sp...	[ "def", "create_new_scheme", "(", "self", ")", ":", "names", "=", "self", ".", "get_option", "(", "'names'", ")", "custom_names", "=", "self", ".", "get_option", "(", "'custom_names'", ",", "[", "]", ")", "# Get the available number this new color scheme", "counter...	43.022727	0.001033
def Many2ManyThroughModel(field): '''Create a Many2Many through model with two foreign key fields and a CompositeFieldId depending on the two foreign keys.''' from stdnet.odm import ModelType, StdModel, ForeignKey, CompositeIdField name_model = field.model._meta.name name_relmodel = field.relmodel....	[ "def", "Many2ManyThroughModel", "(", "field", ")", ":", "from", "stdnet", ".", "odm", "import", "ModelType", ",", "StdModel", ",", "ForeignKey", ",", "CompositeIdField", "name_model", "=", "field", ".", "model", ".", "_meta", ".", "name", "name_relmodel", "=",...	42.578947	0.000604
def Overlay_setShowDebugBorders(self, show): """ Function path: Overlay.setShowDebugBorders Domain: Overlay Method name: setShowDebugBorders Parameters: Required arguments: 'show' (type: boolean) -> True for showing debug borders No return value. Description: Requests that backend show...	[ "def", "Overlay_setShowDebugBorders", "(", "self", ",", "show", ")", ":", "assert", "isinstance", "(", "show", ",", "(", "bool", ",", ")", ")", ",", "\"Argument 'show' must be of type '['bool']'. Received type: '%s'\"", "%", "type", "(", "show", ")", "subdom_funcs",...	30.210526	0.047297
def build_specfile_filesection(spec, files): """ builds the %file section of the specfile """ str = '%files\n' if 'X_RPM_DEFATTR' not in spec: spec['X_RPM_DEFATTR'] = '(-,root,root)' str = str + '%%defattr %s\n' % spec['X_RPM_DEFATTR'] supported_tags = { 'PACKAGING_CONFIG' ...	[ "def", "build_specfile_filesection", "(", "spec", ",", "files", ")", ":", "str", "=", "'%files\\n'", "if", "'X_RPM_DEFATTR'", "not", "in", "spec", ":", "spec", "[", "'X_RPM_DEFATTR'", "]", "=", "'(-,root,root)'", "str", "=", "str", "+", "'%%defattr %s\\n'", "%...	31.575	0.010753
def _rgb_triangle(ax, r_label, g_label, b_label, loc): """ Draw an RGB triangle legend on the desired axis """ if not loc in range(1, 11): loc = 2 from mpl_toolkits.axes_grid1.inset_locator import inset_axes inset_ax = inset_axes(ax, width=1, height=1, loc=lo...	[ "def", "_rgb_triangle", "(", "ax", ",", "r_label", ",", "g_label", ",", "b_label", ",", "loc", ")", ":", "if", "not", "loc", "in", "range", "(", "1", ",", "11", ")", ":", "loc", "=", "2", "from", "mpl_toolkits", ".", "axes_grid1", ".", "inset_locator...	43.042553	0.00145
def exists_alias(self, using=None, **kwargs): """ Return a boolean indicating whether given alias exists for this index. Any additional keyword arguments will be passed to ``Elasticsearch.indices.exists_alias`` unchanged. """ return self._get_connection(using).indices.ex...	[ "def", "exists_alias", "(", "self", ",", "using", "=", "None", ",", "", "", "kwargs", ")", ":", "return", "self", ".", "_get_connection", "(", "using", ")", ".", "indices", ".", "exists_alias", "(", "index", "=", "self", ".", "_name", ",", "", ""...	43.875	0.00838
def point_on_line(ab, c): ''' point_on_line((a,b), c) yields True if point x is on line (a,b) and False otherwise. ''' (a,b) = ab abc = [np.asarray(u) for u in (a,b,c)] if any(len(u.shape) == 2 for u in abc): (a,b,c) = [np.reshape(u,(len(u),-1)) for u in abc] else: ...	[ "def", "point_on_line", "(", "ab", ",", "c", ")", ":", "(", "a", ",", "b", ")", "=", "ab", "abc", "=", "[", "np", ".", "asarray", "(", "u", ")", "for", "u", "in", "(", "a", ",", "b", ",", "c", ")", "]", "if", "any", "(", "len", "(", "u"...	43.666667	0.020927
def maximumBelow(requestContext, seriesList, n): """ Takes one metric or a wildcard seriesList followed by a constant n. Draws only the metrics with a maximum value below n. Example:: &target=maximumBelow(system.interface.eth*.packetsSent,1000) This would only display interfaces which alw...	[ "def", "maximumBelow", "(", "requestContext", ",", "seriesList", ",", "n", ")", ":", "results", "=", "[", "]", "for", "series", "in", "seriesList", ":", "val", "=", "safeMax", "(", "series", ")", "if", "val", "is", "None", "or", "val", "<=", "n", ":"...	28.777778	0.001869
def filtered(self, step_names): """Returns a "filtered" version of this graph.""" return Graph(steps=self.steps, dag=self.dag.filter(step_names))	[ "def", "filtered", "(", "self", ",", "step_names", ")", ":", "return", "Graph", "(", "steps", "=", "self", ".", "steps", ",", "dag", "=", "self", ".", "dag", ".", "filter", "(", "step_names", ")", ")" ]	53	0.012422
def _dphiTilde(self, r, N, L): """ NAME: _dphiTilde PURPOSE: Evaluate the derivative of phiTilde with respect to r INPUT: r - spherical radius N - size of the N dimension L - size of the L dimension OUTPUT: the der...	[ "def", "_dphiTilde", "(", "self", ",", "r", ",", "N", ",", "L", ")", ":", "a", "=", "self", ".", "_a", "l", "=", "nu", ".", "arange", "(", "0", ",", "L", ",", "dtype", "=", "float", ")", "[", "nu", ".", "newaxis", ",", ":", "]", "n", "=",...	35.818182	0.017305
def load_annotations(self, aname, sep=','): """Loads cell annotations. Loads the cell annoations specified by the 'aname' path. Parameters ---------- aname - string The path to the annotations file. First column should be cell IDs and second column shoul...	[ "def", "load_annotations", "(", "self", ",", "aname", ",", "sep", "=", "','", ")", ":", "ann", "=", "pd", ".", "read_csv", "(", "aname", ")", "cell_names", "=", "np", ".", "array", "(", "list", "(", "self", ".", "adata", ".", "obs_names", ")", ")",...	38.3	0.001698
def _loci_to_arr(loci, taxdict, mindict): """ return a frequency array from a loci file for all loci with taxa from taxdict and min coverage from mindict. """ ## make the array (4 or 5) and a mask array to remove loci without cov nloci = len(loci) maxlen = np.max(np.array([len(locus.split...	[ "def", "_loci_to_arr", "(", "loci", ",", "taxdict", ",", "mindict", ")", ":", "## make the array (4 or 5) and a mask array to remove loci without cov", "nloci", "=", "len", "(", "loci", ")", "maxlen", "=", "np", ".", "max", "(", "np", ".", "array", "(", "[", "...	36.957983	0.009079
def list_uplink_dvportgroup(dvs, service_instance=None): ''' Returns the uplink portgroup of a distributed virtual switch. dvs Name of the DVS containing the portgroup. service_instance Service instance (vim.ServiceInstance) of the vCenter. Default is None. .. code-block::...	[ "def", "list_uplink_dvportgroup", "(", "dvs", ",", "service_instance", "=", "None", ")", ":", "proxy_type", "=", "get_proxy_type", "(", ")", "if", "proxy_type", "==", "'esxdatacenter'", ":", "datacenter", "=", "__salt__", "[", "'esxdatacenter.get_details'", "]", "...	39.214286	0.000889
def WriteApprovalRequest(self, approval_request): """Writes an approval request object.""" approvals = self.approvals_by_username.setdefault( approval_request.requestor_username, {}) approval_id = str(os.urandom(16).encode("hex")) cloned_request = approval_request.Copy() cloned_request.time...	[ "def", "WriteApprovalRequest", "(", "self", ",", "approval_request", ")", ":", "approvals", "=", "self", ".", "approvals_by_username", ".", "setdefault", "(", "approval_request", ".", "requestor_username", ",", "{", "}", ")", "approval_id", "=", "str", "(", "os"...	38	0.002141
def delete_record(name, zone, record_type, identifier=None, all_records=False, region=None, key=None, keyid=None, profile=None, wait_for_sync=True, split_dns=False, private_zone=False, retry_on_rate_limit=None, rate_limit_retries=None, retry_on_err...	[ "def", "delete_record", "(", "name", ",", "zone", ",", "record_type", ",", "identifier", "=", "None", ",", "all_records", "=", "False", ",", "region", "=", "None", ",", "key", "=", "None", ",", "keyid", "=", "None", ",", "profile", "=", "None", ",", ...	38.135593	0.000867
def literalize_string(content, is_unicode=False): r'''Literalize a string content. Examples: >>> print literalize_string('str') 'str' >>> print literalize_string('\'str\'') "'str'" >>> print literalize_string('\"\'str\'\"') '"\'str\'"' ''' quote_mark = "'" if "'" in conten...	[ "def", "literalize_string", "(", "content", ",", "is_unicode", "=", "False", ")", ":", "quote_mark", "=", "\"'\"", "if", "\"'\"", "in", "content", ":", "quote_mark", "=", "'\"'", "if", "'\"'", "in", "content", ":", "quote_mark", "=", "\"'\"", "content", "=...	22.625	0.001767
def _check_euk_contamination(self, hmm_hit_tables): ''' check_euk_contamination - Check output HMM tables hits reads that hit the 18S HMM with a higher bit score. Parameters ---------- hmm_hit_tables : array Array of paths to the out...	[ "def", "_check_euk_contamination", "(", "self", ",", "hmm_hit_tables", ")", ":", "euk_hit_table", "=", "HMMreader", "(", "hmm_hit_tables", ".", "pop", "(", "-", "1", ")", ")", "other_hit_tables", "=", "[", "HMMreader", "(", "x", ")", "for", "x", "in", "hmm...	36.291667	0.002236
def all_errors(self, joiner="; "): """Returns a string representation of all errors recorded for the instance.""" parts = [] for pname, errs in self.errors.items(): for err in errs: parts.append("{0}: {1}".format(pname, err)) return joiner.join(parts)	[ "def", "all_errors", "(", "self", ",", "joiner", "=", "\"; \"", ")", ":", "parts", "=", "[", "]", "for", "pname", ",", "errs", "in", "self", ".", "errors", ".", "items", "(", ")", ":", "for", "err", "in", "errs", ":", "parts", ".", "append", "(",...	39.285714	0.010676
def generate_key(url, page_number): """ >>> url_a = 'http://localhost:5009/search?keywords=a' >>> generate_key(url_a, 10) 'http://localhost:5009/search?keywords=a&page=10' >>> url_b = 'http://localhost:5009/search?keywords=b&page=1' >>> generate_key(url_b, 10) 'http://localhost:5009/search?k...	[ "def", "generate_key", "(", "url", ",", "page_number", ")", ":", "index", "=", "url", ".", "rfind", "(", "'page'", ")", "if", "index", "!=", "-", "1", ":", "result", "=", "url", "[", "0", ":", "index", "]", "result", "+=", "'page=%s'", "%", "page_n...	32	0.001786
def parse(self, msg, name): """Parses the message. We check that the message is properly formatted. :param msg: a json-encoded value containing a JWS or JWE+JWS token :raises InvalidMessage: if the message cannot be parsed or validated :returns: A verified payload """...	[ "def", "parse", "(", "self", ",", "msg", ",", "name", ")", ":", "try", ":", "jtok", "=", "JWT", "(", "jwt", "=", "msg", ")", "except", "Exception", "as", "e", ":", "raise", "InvalidMessage", "(", "'Failed to parse message: %s'", "%", "str", "(", "e", ...	36.196078	0.001055
def messageRemote(self, cmdObj, consequence=None, **args): """ Send a message to the peer identified by the target, via the given L{Command} object and arguments. @param cmdObj: a L{twisted.protocols.amp.Command}, whose serialized form will be the message. @param conseq...	[ "def", "messageRemote", "(", "self", ",", "cmdObj", ",", "consequence", "=", "None", ",", "", "", "args", ")", ":", "messageBox", "=", "cmdObj", ".", "makeArguments", "(", "args", ",", "self", ")", "messageBox", "[", "COMMAND", "]", "=", "cmdObj", "....	39.173913	0.002167
def binglookup(w1i, w2i): """ Bingham statistics lookup table. """ K = {'0.06': {'0.02': ['-25.58', '-8.996'], '0.06': ['-9.043', '-9.043'], '0.04': ['-13.14', '-9.019']}, '0.22': {'0.08': ['-6.944', '-2.644'], '0.02': ['-25.63', '-2.712'], '0.20': ['-2.649', '-2.354'], '0.06': ['-9.027', '-2.673'], '0....	[ "def", "binglookup", "(", "w1i", ",", "w2i", ")", ":", "K", "=", "{", "'0.06'", ":", "{", "'0.02'", ":", "[", "'-25.58'", ",", "'-8.996'", "]", ",", "'0.06'", ":", "[", "'-9.043'", ",", "'-9.043'", "]", ",", "'0.04'", ":", "[", "'-13.14'", ",", "...	465.090909	0.000293
def _as_array_or_item(data): """Return the given values as a numpy array, or as an individual item if it's a 0d datetime64 or timedelta64 array. Importantly, this function does not copy data if it is already an ndarray - otherwise, it will not be possible to update Variable values in place. This f...	[ "def", "_as_array_or_item", "(", "data", ")", ":", "data", "=", "np", ".", "asarray", "(", "data", ")", "if", "data", ".", "ndim", "==", "0", ":", "if", "data", ".", "dtype", ".", "kind", "==", "'M'", ":", "data", "=", "np", ".", "datetime64", "(...	38.142857	0.001218
def create_random(magf, magf_params, errf, errf_params, timef=np.linspace, timef_params=None, size=DEFAULT_SIZE, id=None, ds_name=DS_NAME, description=DESCRIPTION, bands=BANDS, metadata=METADATA): """Generate a data with any given random function. Parameter...	[ "def", "create_random", "(", "magf", ",", "magf_params", ",", "errf", ",", "errf_params", ",", "timef", "=", "np", ".", "linspace", ",", "timef_params", "=", "None", ",", "size", "=", "DEFAULT_SIZE", ",", "id", "=", "None", ",", "ds_name", "=", "DS_NAME"...	31.424658	0.000423
def stop(name, vmid=None, call=None): ''' Stop a node ("pulling the plug"). CLI Example: .. code-block:: bash salt-cloud -a stop mymachine ''' if call != 'action': raise SaltCloudSystemExit( 'The stop action must be called with -a or --action.' ) if no...	[ "def", "stop", "(", "name", ",", "vmid", "=", "None", ",", "call", "=", "None", ")", ":", "if", "call", "!=", "'action'", ":", "raise", "SaltCloudSystemExit", "(", "'The stop action must be called with -a or --action.'", ")", "if", "not", "set_vm_status", "(", ...	26.590909	0.00165
def touch(path, times=None): """Equivalent of unix `touch path`. :API: public :path: The file to touch. :times Either a tuple of (atime, mtime) or else a single time to use for both. If not specified both atime and mtime are updated to the current time. """ if times: if len(times) > ...	[ "def", "touch", "(", "path", ",", "times", "=", "None", ")", ":", "if", "times", ":", "if", "len", "(", "times", ")", ">", "2", ":", "raise", "ValueError", "(", "'times must either be a tuple of (atime, mtime) or else a single time value '", "'to use for both.'", ...	29.368421	0.013889
def option(param_decls, *attrs): """Attach an option to the command. All positional arguments are passed as parameter declarations to :class:`Option`, all keyword arguments are forwarded unchanged. This is equivalent to creating an :class:`Option` instance manually and attaching it to the :attr:`...	[ "def", "option", "(", "", "param_decls", ",", "", "", "attrs", ")", ":", "def", "decorator", "(", "f", ")", ":", "_param_memo", "(", "f", ",", "GandiOption", "(", "param_decls", ",", "", "*", "attrs", ")", ")", "return", "f", "return", "decorator...	38	0.002141
def d2AIbr_dV2(dIbr_dVa, dIbr_dVm, Ibr, Ybr, V, lam): """ Computes 2nd derivatives of \|complex current\|*2 w.r.t. V. """ diaglam = spdiag(lam) diagIbr_conj = spdiag(conj(Ibr)) Iaa, Iav, Iva, Ivv = d2Ibr_dV2(Ybr, V, diagIbr_conj lam) Haa = 2 * ( Iaa + dIbr_dVa.T * diaglam * conj(dIbr_dVa) ).r...	[ "def", "d2AIbr_dV2", "(", "dIbr_dVa", ",", "dIbr_dVm", ",", "Ibr", ",", "Ybr", ",", "V", ",", "lam", ")", ":", "diaglam", "=", "spdiag", "(", "lam", ")", "diagIbr_conj", "=", "spdiag", "(", "conj", "(", "Ibr", ")", ")", "Iaa", ",", "Iav", ",", "I...	39.285714	0.015986
def handle_args_and_set_context(args): """ Args: args: the command line args, probably passed from main() as sys.argv[1:] Returns: a populated EFPWContext object Raises: RuntimeError: if repo or branch isn't as spec'd in ef_config.EF_REPO and ef_config.EF_REPO_BRANCH ValueError: if a par...	[ "def", "handle_args_and_set_context", "(", "args", ")", ":", "parser", "=", "argparse", ".", "ArgumentParser", "(", ")", "parser", ".", "add_argument", "(", "\"service\"", ",", "help", "=", "\"name of service password is being generated for\"", ")", "parser", ".", "...	47.944444	0.017604
def build_trees(fclade_counts, namedict): """ A subfunc of consensus_tree(). Build an unrooted consensus tree from filtered clade counts. """ ## storage nodes = {} idxarr = np.arange(len(fclade_counts[0][0])) queue = [] ## create dict of clade counts and set keys countdict =...	[ "def", "build_trees", "(", "fclade_counts", ",", "namedict", ")", ":", "## storage", "nodes", "=", "{", "}", "idxarr", "=", "np", ".", "arange", "(", "len", "(", "fclade_counts", "[", "0", "]", "[", "0", "]", ")", ")", "queue", "=", "[", "]", "## c...	32.714286	0.008008
def fix_orientation(self, tour): """ Test each scaffold if flipping will increass longest monotonic chain length. """ orientations = dict(tour) # old configuration here scaffold_oo = defaultdict(list) scaffolds, oos = zip(*tour) for mlg in self.linkage_gr...	[ "def", "fix_orientation", "(", "self", ",", "tour", ")", ":", "orientations", "=", "dict", "(", "tour", ")", "# old configuration here", "scaffold_oo", "=", "defaultdict", "(", "list", ")", "scaffolds", ",", "oos", "=", "zip", "(", "*", "tour", ")", "for",...	37	0.001463
def toimage(arr, high=255, low=0, cmin=None, cmax=None, pal=None, mode=None, channel_axis=None): """Takes a numpy array and returns a PIL image. The mode of the PIL image depends on the array shape and the `pal` and `mode` keywords. For 2-D arrays, if `pal` is a valid (N,3) byte-array givi...	[ "def", "toimage", "(", "arr", ",", "high", "=", "255", ",", "low", "=", "0", ",", "cmin", "=", "None", ",", "cmax", "=", "None", ",", "pal", "=", "None", ",", "mode", "=", "None", ",", "channel_axis", "=", "None", ")", ":", "data", "=", "asarra...	36.848214	0.000236
async def send_ssh_job_info(self, job_id: BackendJobId, host: str, port: int, key: str): """ Send info about the SSH debug connection to the backend/client. Must be called at most once for each job. :exception JobNotRunningException: is raised when the job is not running anymore (send_job_resu...	[ "async", "def", "send_ssh_job_info", "(", "self", ",", "job_id", ":", "BackendJobId", ",", "host", ":", "str", ",", "port", ":", "int", ",", "key", ":", "str", ")", ":", "if", "job_id", "not", "in", "self", ".", "__running_job", ":", "raise", "JobNotRu...	64.583333	0.008906
def ndimage_to_list(image): """ Split a n dimensional ANTsImage into a list of n-1 dimensional ANTsImages Arguments --------- image : ANTsImage n-dimensional image to split Returns ------- list of ANTsImage types Example ------- >>> import ants >>> image = ...	[ "def", "ndimage_to_list", "(", "image", ")", ":", "inpixeltype", "=", "image", ".", "pixeltype", "dimension", "=", "image", ".", "dimension", "components", "=", "1", "imageShape", "=", "image", ".", "shape", "nSections", "=", "imageShape", "[", "dimension", ...	31.446809	0.021654
def coverage_lineplot (self): """ Make HTML for coverage line plots """ # Add line graph to section data = list() data_labels = list() if len(self.rna_seqc_norm_high_cov) > 0: data.append(self.rna_seqc_norm_high_cov) data_labels.append({'name': 'High Expre...	[ "def", "coverage_lineplot", "(", "self", ")", ":", "# Add line graph to section", "data", "=", "list", "(", ")", "data_labels", "=", "list", "(", ")", "if", "len", "(", "self", ".", "rna_seqc_norm_high_cov", ")", ">", "0", ":", "data", ".", "append", "(", ...	43.387097	0.009455
def example(): """ Some example usage of different twilio resources. """ client = Client(ACCOUNT_SID, AUTH_TOKEN) # Get all messages all_messages = client.messages.list() print('There are {} messages in your account.'.format(len(all_messages))) # Get only last 10 messages... some_m...	[ "def", "example", "(", ")", ":", "client", "=", "Client", "(", "ACCOUNT_SID", ",", "AUTH_TOKEN", ")", "# Get all messages", "all_messages", "=", "client", ".", "messages", ".", "list", "(", ")", "print", "(", "'There are {} messages in your account.'", ".", "for...	32.84375	0.001848
def _dedent(text): """Remove common indentation from each line in a text block. When text block is a single line, return text block. Otherwise determine common indentation from last line, strip common indentation from each line, and return text block consisting of inner lines (d...	[ "def", "_dedent", "(", "text", ")", ":", "lines", "=", "text", ".", "split", "(", "'\\n'", ")", "if", "len", "(", "lines", ")", "==", "1", ":", "indent", "=", "0", "elif", "lines", "[", "0", "]", ".", "strip", "(", ")", ":", "raise", "ValueErro...	35.189189	0.001495
def _get_exposure(fname, stop=None): """ :param fname: path of the XML file containing the exposure :param stop: node at which to stop parsing (or None) :returns: a pair (Exposure instance, list of asset nodes) """ [exposure] = nrml.read(fname, stop=stop) if not expos...	[ "def", "_get_exposure", "(", "fname", ",", "stop", "=", "None", ")", ":", "[", "exposure", "]", "=", "nrml", ".", "read", "(", "fname", ",", "stop", "=", "stop", ")", "if", "not", "exposure", ".", "tag", ".", "endswith", "(", "'exposureModel'", ")", ...	40.540816	0.000246
def insert_one(self, validate=True): """Insert this document. The `validate` argument translates to the inverse of the `bypass_document_validation` PyMongo option. https://api.mongodb.com/python/current/api/pymongo/collection.html#pymongo.collection.Collection.insert_one """ kw = {} kw['bypass_docu...	[ "def", "insert_one", "(", "self", ",", "validate", "=", "True", ")", ":", "kw", "=", "{", "}", "kw", "[", "'bypass_document_validation'", "]", "=", "not", "validate", "collection", "=", "self", ".", "get_collection", "(", "kw", ".", "pop", "(", "'source'...	34.230769	0.041575
def to_sql(frame, name, con, schema=None, if_exists='fail', index=True, index_label=None, chunksize=None, dtype=None, method=None): """ Write records stored in a DataFrame to a SQL database. Parameters ---------- frame : DataFrame, Series name : string Name of SQL table. ...	[ "def", "to_sql", "(", "frame", ",", "name", ",", "con", ",", "schema", "=", "None", ",", "if_exists", "=", "'fail'", ",", "index", "=", "True", ",", "index_label", "=", "None", ",", "chunksize", "=", "None", ",", "dtype", "=", "None", ",", "method", ...	46.754098	0.000343
def service_list(service=None, key_name=None, kwargs): """General list function for Google APIs.""" resp_list = [] req = service.list(kwargs) while req is not None: resp = req.execute() if key_name and key_name in resp: resp_list.extend(resp[key_name]) else: ...	[ "def", "service_list", "(", "service", "=", "None", ",", "key_name", "=", "None", ",", "", "", "kwargs", ")", ":", "resp_list", "=", "[", "]", "req", "=", "service", ".", "list", "(", "", "", "kwargs", ")", "while", "req", "is", "not", "None", ...	33.166667	0.001629
def create( meta_schema, validators=(), version=None, default_types=None, type_checker=None, id_of=_id_of, ): """ Create a new validator class. Arguments: meta_schema (collections.Mapping): the meta schema for the new validator class validators (collec...	[ "def", "create", "(", "meta_schema", ",", "validators", "=", "(", ")", ",", "version", "=", "None", ",", "default_types", "=", "None", ",", "type_checker", "=", "None", ",", "id_of", "=", "_id_of", ",", ")", ":", "if", "default_types", "is", "not", "No...	32.398104	0.000142
def format_help(self): """ Strip out { } redundant subcommand section. """ help_msg = super(FocusArgParser, self).format_help() return re.sub(r'\{.+\}', '', help_msg)	[ "def", "format_help", "(", "self", ")", ":", "help_msg", "=", "super", "(", "FocusArgParser", ",", "self", ")", ".", "format_help", "(", ")", "return", "re", ".", "sub", "(", "r'\\{.+\\}'", ",", "''", ",", "help_msg", ")" ]	39.6	0.009901
def roll(self, shift): """shift vector """ self._saved = LimitedSizeDict(size_limit=2*5) new_arr = zeros(len(self), dtype=self.dtype) if shift < 0: shift = shift - len(self) (shift // len(self)) if shift == 0: return n...	[ "def", "roll", "(", "self", ",", "shift", ")", ":", "self", ".", "_saved", "=", "LimitedSizeDict", "(", "size_limit", "=", "2", "**", "5", ")", "new_arr", "=", "zeros", "(", "len", "(", "self", ")", ",", "dtype", "=", "self", ".", "dtype", ")", "...	28.875	0.010482
def list(self, roomId=None, personId=None, personEmail=None, max=None, **request_parameters): """List room memberships. By default, lists memberships for rooms to which the authenticated user belongs. Use query parameters to filter the response. Use `roomId` to li...	[ "def", "list", "(", "self", ",", "roomId", "=", "None", ",", "personId", "=", "None", ",", "personEmail", "=", "None", ",", "max", "=", "None", ",", "", "", "request_parameters", ")", ":", "check_type", "(", "roomId", ",", "basestring", ")", "check_t...	40.672131	0.001181
def _G(self, x, p): """ analytic solution of the 2d projected mass integral integral: 2 * pi * x * kappa * dx :param x: :param p: :return: """ prefactor = (p + p 3) -1 * p if isinstance(x, np.ndarray): inds0 = np.where(x * p ==...	[ "def", "_G", "(", "self", ",", "x", ",", "p", ")", ":", "prefactor", "=", "(", "p", "+", "p", "", "3", ")", "", "-", "1", "*", "p", "if", "isinstance", "(", "x", ",", "np", ".", "ndarray", ")", ":", "inds0", "=", "np", ".", "where", "...	40.8	0.009574
def _map_arg_names(source, mapping): """Map one set of keys to another.""" return {cartopy_name: source[cf_name] for cartopy_name, cf_name in mapping if cf_name in source}	[ "def", "_map_arg_names", "(", "source", ",", "mapping", ")", ":", "return", "{", "cartopy_name", ":", "source", "[", "cf_name", "]", "for", "cartopy_name", ",", "cf_name", "in", "mapping", "if", "cf_name", "in", "source", "}" ]	50	0.014778
def move_to(self, start, end): """Moves the `Polynucleotide` to lie on the `start` and `end` vector. Parameters ---------- start : 3D Vector (tuple or list or numpy.array) The coordinate of the start of the helix primitive. end : 3D Vector (tuple or list or numpy.arr...	[ "def", "move_to", "(", "self", ",", "start", ",", "end", ")", ":", "start", "=", "numpy", ".", "array", "(", "start", ")", "end", "=", "numpy", ".", "array", "(", "end", ")", "if", "numpy", ".", "allclose", "(", "start", ",", "end", ")", ":", "...	38.36	0.002035
def parse_argument(string: str) -> Union[str, Tuple[str, str]]: """Return a single value for a string understood as a positional argument or a \|tuple\| containing a keyword and its value for a string understood as a keyword argument. \|parse_argument\| is intended to be used as a helper function for f...	[ "def", "parse_argument", "(", "string", ":", "str", ")", "->", "Union", "[", "str", ",", "Tuple", "[", "str", ",", "str", "]", "]", ":", "idx_equal", "=", "string", ".", "find", "(", "'='", ")", "if", "idx_equal", "==", "-", "1", ":", "return", "...	32.69697	0.0009
def fac2real(pp_file=None,factors_file="factors.dat",out_file="test.ref", upper_lim=1.0e+30,lower_lim=-1.0e+30,fill_value=1.0e+30): """A python replication of the PEST fac2real utility for creating a structure grid array from previously calculated kriging factors (weights) Parameters -----...	[ "def", "fac2real", "(", "pp_file", "=", "None", ",", "factors_file", "=", "\"factors.dat\"", ",", "out_file", "=", "\"test.ref\"", ",", "upper_lim", "=", "1.0e+30", ",", "lower_lim", "=", "-", "1.0e+30", ",", "fill_value", "=", "1.0e+30", ")", ":", "if", "...	37.863636	0.009827
def compute_internal(self, sym_name, bucket_kwargs=None, **arg_dict): """ View the internal symbols using the forward function. :param sym_name: :param bucket_kwargs: :param input_dict: :return: """ data_shapes = {k: v.shape for k, v in arg_dict.items()} ...	[ "def", "compute_internal", "(", "self", ",", "sym_name", ",", "bucket_kwargs", "=", "None", ",", "", "", "arg_dict", ")", ":", "data_shapes", "=", "{", "k", ":", "v", ".", "shape", "for", "k", ",", "v", "in", "arg_dict", ".", "items", "(", ")", "...	43.515152	0.001362
def get_source_attributes(source): """ Retreives a dictionary of source attributes from the source class :param source: Seismic source as instance of :class: `openquake.hazardlib.source.base.BaseSeismicSource` :returns: Dictionary of source attributes """ attrs = {"id": ...	[ "def", "get_source_attributes", "(", "source", ")", ":", "attrs", "=", "{", "\"id\"", ":", "source", ".", "source_id", ",", "\"name\"", ":", "source", ".", "name", ",", "\"tectonicRegion\"", ":", "source", ".", "tectonic_region_type", "}", "if", "isinstance", ...	34	0.001362
def get_prefix_dir(archive): """ Often, all files are in a single directory. If so, they'll all have the same prefix. Determine any such prefix. archive is a ZipFile """ names = archive.namelist() shortest_name = sorted(names, key=len)[0] candidate_prefixes = [ shortest_name[:len...	[ "def", "get_prefix_dir", "(", "archive", ")", ":", "names", "=", "archive", ".", "namelist", "(", ")", "shortest_name", "=", "sorted", "(", "names", ",", "key", "=", "len", ")", "[", "0", "]", "candidate_prefixes", "=", "[", "shortest_name", "[", ":", ...	31.75	0.001912
def replace_cluster_custom_object_status(self, group, version, plural, name, body, **kwargs): # noqa: E501 """replace_cluster_custom_object_status # noqa: E501 replace status of the cluster scoped specified custom object # noqa: E501 This method makes a synchronous HTTP request by default. T...	[ "def", "replace_cluster_custom_object_status", "(", "self", ",", "group", ",", "version", ",", "plural", ",", "name", ",", "body", ",", "", "", "kwargs", ")", ":", "# noqa: E501", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ...	57.76	0.001362
def main(): """Provide the entry point in the the modutils command.""" mod_choices = ('banned', 'contributor', 'moderator') mod_choices_dsp = ', '.join(['`{}`'.format(x) for x in mod_choices]) msg = { 'add': ('Add users to one of the following categories: {}' .format(mod_choices_...	[ "def", "main", "(", ")", ":", "mod_choices", "=", "(", "'banned'", ",", "'contributor'", ",", "'moderator'", ")", "mod_choices_dsp", "=", "', '", ".", "join", "(", "[", "'`{}`'", ".", "format", "(", "x", ")", "for", "x", "in", "mod_choices", "]", ")", ...	51.141304	0.000209
def setVisible(self, state): """ Sets whether or not this particular layer is visible. Depending on \ if the inheritVisibility property is set for this layer, it may not \ actually affect the visible state based on its inheritance. If you \ want to force this layer to be visibl...	[ "def", "setVisible", "(", "self", ",", "state", ")", ":", "# store the current state", "currvis", "=", "self", ".", "isVisible", "(", ")", "# update the local property", "self", ".", "_visible", "=", "state", "# check the new state", "newvis", "=", "self", ".", ...	31.222222	0.009206
def arr_base10toN(anum10, aradix, *args): """ ARGS anum10 in number in base 10 aradix in convert <anum10> to number in base + <aradix> OPTIONAL forcelength in if nonzero, indicates the length ...	[ "def", "arr_base10toN", "(", "anum10", ",", "aradix", ",", "*", "args", ")", ":", "new_num_arr", "=", "array", "(", "(", ")", ")", "current", "=", "anum10", "while", "current", "!=", "0", ":", "remainder", "=", "current", "%", "aradix", "new_num_arr", ...	31.6	0.002047
def defrag(plist): """defrag(plist) -> ([not fragmented], [defragmented], [ [bad fragments], [bad fragments], ... ])""" frags = defaultdict(PacketList) nofrag = PacketList() for p in plist: ip = p[IP] if IP not in p: nofrag.append(p) continue ...	[ "def", "defrag", "(", "plist", ")", ":", "frags", "=", "defaultdict", "(", "PacketList", ")", "nofrag", "=", "PacketList", "(", ")", "for", "p", "in", "plist", ":", "ip", "=", "p", "[", "IP", "]", "if", "IP", "not", "in", "p", ":", "nofrag", ".",...	34.232143	0.001521
def new_text_block(self, kwargs): """Create a new text block.""" proto = {'content': '', 'type': self.markdown} proto.update(kwargs) return proto	[ "def", "new_text_block", "(", "self", ",", "", "", "kwargs", ")", ":", "proto", "=", "{", "'content'", ":", "''", ",", "'type'", ":", "self", ".", "markdown", "}", "proto", ".", "update", "(", "", "", "kwargs", ")", "return", "proto" ]	35.4	0.01105
def show(self, commit): """Display one commit line. The output will be: <uuid> <#lines> <author> <short-commit-date> If verbose flag set, the output will be: <uuid> <#lines> <author+email> <long-date> <committer+email> """ author = commit.author ...	[ "def", "show", "(", "self", ",", "commit", ")", ":", "author", "=", "commit", ".", "author", "author_width", "=", "25", "committer", "=", "''", "commit_date", "=", "date_to_str", "(", "commit", ".", "committer_time", ",", "commit", ".", "committer_tz", ","...	38.285714	0.002427
def _to_pil_rgb_image(image): """Returns an PIL Image converted to the RGB color space. If the image has an alpha channel (transparency), it will be overlaid on a black background. :param image: the PIL image to convert :returns: The input image if it was already in RGB mode, or a new RGB image ...	[ "def", "_to_pil_rgb_image", "(", "image", ")", ":", "if", "image", ".", "mode", "==", "\"RGB\"", ":", "return", "image", "from", "PIL", "import", "Image", "image", ".", "load", "(", ")", "rgb_image", "=", "Image", ".", "new", "(", "\"RGB\"", ",", "imag...	27.307692	0.001361
def PostUnregistration(method): # pylint: disable=C0103 """ The service post-unregistration callback decorator is called after a service of the component has been unregistered from the framework. The decorated method must accept the :class:`~pelix.framework.ServiceReference` of the registered ...	[ "def", "PostUnregistration", "(", "method", ")", ":", "# pylint: disable=C0103", "if", "not", "isinstance", "(", "method", ",", "types", ".", "FunctionType", ")", ":", "raise", "TypeError", "(", "\"@PostUnregistration can only be applied on functions\"", ")", "# Tests t...	32.903226	0.001905
def create_html(self, fname, title="ClassTracker Statistics"): """ Create HTML page `fname` and additional files in a directory derived from `fname`. """ # Create a folder to store the charts and additional HTML files. self.basedir = os.path.dirname(os.path.abspath(fname)...	[ "def", "create_html", "(", "self", ",", "fname", ",", "title", "=", "\"ClassTracker Statistics\"", ")", ":", "# Create a folder to store the charts and additional HTML files.", "self", ".", "basedir", "=", "os", ".", "path", ".", "dirname", "(", "os", ".", "path", ...	43.552632	0.001773
def reset(self): """Reset the state of this updater for a new optimisation problem.""" self.__init__(self.alpha, self.beta1, self.beta2, self.epsilon)	[ "def", "reset", "(", "self", ")", ":", "self", ".", "__init__", "(", "self", ".", "alpha", ",", "self", ".", "beta1", ",", "self", ".", "beta2", ",", "self", ".", "epsilon", ")" ]	54.666667	0.012048
def update_mutation_inputs(service): """ Args: service : The service being updated by the mutation Returns: (list) : a list of all of the fields availible for the service. Pk is a required field in order to filter the results """ # grab the default lis...	[ "def", "update_mutation_inputs", "(", "service", ")", ":", "# grab the default list of field summaries", "inputs", "=", "_service_mutation_summaries", "(", "service", ")", "# visit each field", "for", "field", "in", "inputs", ":", "# if we're looking at the id field", "if", ...	30.041667	0.001344
def _generate_overview_note(pass_count, only_warning_count, error_count, total_count): """ Generates and returns the HTML note that provides a summary of validation status. """ note_html = ['<div class="progress">'] pbars = [ [ float(error_count), 'danger', 'had errors' ], [ float(only_warn...	[ "def", "_generate_overview_note", "(", "pass_count", ",", "only_warning_count", ",", "error_count", ",", "total_count", ")", ":", "note_html", "=", "[", "'<div class=\"progress\">'", "]", "pbars", "=", "[", "[", "float", "(", "error_count", ")", ",", "'danger'", ...	40.291667	0.021212
def visit_loop(self, node, cond=None): """ Handle incremented variables in loop body. >>> import gast as ast >>> from pythran import passmanager, backend >>> node = ast.parse(''' ... def foo(): ... a = b = c = 2 ... while a > 0: ... a -= 1...	[ "def", "visit_loop", "(", "self", ",", "node", ",", "cond", "=", "None", ")", ":", "# visit once to gather newly declared vars", "for", "stmt", "in", "node", ".", "body", ":", "self", ".", "visit", "(", "stmt", ")", "# freeze current state", "old_range", "=", ...	28.238095	0.00163
def iter_fields(fields): """ .. deprecated:: 1.6 Iterate over fields. The addition of :class:`~urllib3.fields.RequestField` makes this function obsolete. Instead, use :func:`iter_field_objects`, which returns :class:`~urllib3.fields.RequestField` objects. Supports list of (k, v) tuples an...	[ "def", "iter_fields", "(", "fields", ")", ":", "if", "isinstance", "(", "fields", ",", "dict", ")", ":", "return", "(", "(", "k", ",", "v", ")", "for", "k", ",", "v", "in", "six", ".", "iteritems", "(", "fields", ")", ")", "return", "(", "(", "...	28.25	0.002141
def _no_spelling_errors(relative_path, contents, linter_options): """No spelling errors in strings, comments or anything of the like.""" block_regexps = linter_options.get("block_regexps", None) chunks, shadow = spellcheckable_and_shadow_contents(contents, ...	[ "def", "_no_spelling_errors", "(", "relative_path", ",", "contents", ",", "linter_options", ")", ":", "block_regexps", "=", "linter_options", ".", "get", "(", "\"block_regexps\"", ",", "None", ")", "chunks", ",", "shadow", "=", "spellcheckable_and_shadow_contents", ...	59.75	0.000824
def load_theme_from_dict(dict_theme): """ Load a theme from a dict. Expected format: { "Question": { "mark_color": "yellow", "brackets_color": "normal", ... }, "List": { "selection_color": "bold_blue", "selection_cursor"...	[ "def", "load_theme_from_dict", "(", "dict_theme", ")", ":", "t", "=", "Default", "(", ")", "for", "question_type", ",", "settings", "in", "dict_theme", ".", "items", "(", ")", ":", "if", "question_type", "not", "in", "vars", "(", "t", ")", ":", "raise", ...	36.324324	0.000725
def flux(self, photon_energy, distance=1 * u.kpc, seed=None): """Differential flux at a given distance from the source from a single seed photon field Parameters ---------- photon_energy : :class:`~astropy.units.Quantity` float or array Photon energy array. ...	[ "def", "flux", "(", "self", ",", "photon_energy", ",", "distance", "=", "1", "*", "u", ".", "kpc", ",", "seed", "=", "None", ")", ":", "model", "=", "super", "(", "InverseCompton", ",", "self", ")", ".", "flux", "(", "photon_energy", ",", "distance",...	37.730769	0.000994
def po_to_unicode(po_obj): """ Turns a polib :class:`polib.PoFile` or a :class:`polib.PoEntry` into a :class:`unicode` string. :param po_obj: Either a :class:`polib.PoFile` or :class:`polib.PoEntry`. :rtype: :class:`unicode` string. """ po_text = po_obj.__str__() if type(po_text) !...	[ "def", "po_to_unicode", "(", "po_obj", ")", ":", "po_text", "=", "po_obj", ".", "__str__", "(", ")", "if", "type", "(", "po_text", ")", "!=", "types", ".", "UnicodeType", ":", "po_text", "=", "po_text", ".", "decode", "(", "'utf-8'", ")", "return", "po...	30.307692	0.012315
def CheckLanguage(filename, clean_lines, linenum, file_extension, include_state, nesting_state, error): """Checks rules from the 'C++ language rules' section of cppguide.html. Some of these rules are hard to test (function overloading, using uint32 inappropriately), but we do the best we can. ...	[ "def", "CheckLanguage", "(", "filename", ",", "clean_lines", ",", "linenum", ",", "file_extension", ",", "include_state", ",", "nesting_state", ",", "error", ")", ":", "# If the line is empty or consists of entirely a comment, no need to", "# check it.", "line", "=", "cle...	43.396226	0.012326
def local_1d_halo_exchange(k, v, num_w_blocks, w_dim, mask_right): """Halo exchange for keys and values for Local 1D attention.""" if num_w_blocks is not None: if mask_right: k = mtf.left_halo_exchange(k, num_w_blocks, w_dim, w_dim.size) v = mtf.left_halo_exchange(v, num_w_blocks, w_dim, w_dim.size)...	[ "def", "local_1d_halo_exchange", "(", "k", ",", "v", ",", "num_w_blocks", ",", "w_dim", ",", "mask_right", ")", ":", "if", "num_w_blocks", "is", "not", "None", ":", "if", "mask_right", ":", "k", "=", "mtf", ".", "left_halo_exchange", "(", "k", ",", "num_...	40.411765	0.018492
def extended(self): """Determine whether the OAuth token has been extended.""" if self.expires_at: return self.expires_at - self.issued_at > timedelta(days=30) else: return False	[ "def", "extended", "(", "self", ")", ":", "if", "self", ".", "expires_at", ":", "return", "self", ".", "expires_at", "-", "self", ".", "issued_at", ">", "timedelta", "(", "days", "=", "30", ")", "else", ":", "return", "False" ]	36.833333	0.00885
def viable_dim_config(bytes_available, arrays, template, dim_ord, nsolvers=1): """ Returns the number of timesteps possible, given the registered arrays and a memory budget defined by bytes_available Arguments ---------------- bytes_available : int The memory budget, or availabl...	[ "def", "viable_dim_config", "(", "bytes_available", ",", "arrays", ",", "template", ",", "dim_ord", ",", "nsolvers", "=", "1", ")", ":", "if", "not", "isinstance", "(", "dim_ord", ",", "list", ")", ":", "raise", "TypeError", "(", "'dim_ord should be a list'", ...	37.275	0.001307
def network_lopf_prepare_solver(network, solver_name="glpk", solver_io=None): """ Prepare solver for linear optimal power flow. Parameters ---------- solver_name : string Must be a solver name that pyomo recognises and that is installed, e.g. "glpk", "gurobi" solver_io : string,...	[ "def", "network_lopf_prepare_solver", "(", "network", ",", "solver_name", "=", "\"glpk\"", ",", "solver_io", "=", "None", ")", ":", "network", ".", "opt", "=", "SolverFactory", "(", "solver_name", ",", "solver_io", "=", "solver_io", ")", "patch_optsolver_record_me...	27.5	0.001351
def _get_engine_filesystem_config(file_types, args, conf_args): """Retriever authorization and engine filesystem configuration. """ file_types = [x.replace("_container", "") for x in list(file_types)] out = "" if "gcp" in file_types: out += _AUTH_CONFIG_GOOGLE if "s3" in file_types: ...	[ "def", "_get_engine_filesystem_config", "(", "file_types", ",", "args", ",", "conf_args", ")", ":", "file_types", "=", "[", "x", ".", "replace", "(", "\"_container\"", ",", "\"\"", ")", "for", "x", "in", "list", "(", "file_types", ")", "]", "out", "=", "...	36.153846	0.001036
def create(self, user, obj, **kwargs): """ Create a new follow link between a user and an object of a registered model type. """ follow = Follow(user=user) follow.target = obj follow.save() return follow	[ "def", "create", "(", "self", ",", "user", ",", "obj", ",", "", "", "kwargs", ")", ":", "follow", "=", "Follow", "(", "user", "=", "user", ")", "follow", ".", "target", "=", "obj", "follow", ".", "save", "(", ")", "return", "follow" ]	26.7	0.01087
def container_stop(name, timeout=30, force=True, remote_addr=None, cert=None, key=None, verify_cert=True): ''' Stop a container name : Name of the container to stop remote_addr : An URL to a remote Server, you also have to give cert and key if you provide rem...	[ "def", "container_stop", "(", "name", ",", "timeout", "=", "30", ",", "force", "=", "True", ",", "remote_addr", "=", "None", ",", "cert", "=", "None", ",", "key", "=", "None", ",", "verify_cert", "=", "True", ")", ":", "container", "=", "container_get"...	26.263158	0.000966
def text(self): """ Content of the response, in unicode. if Response.encoding is None and chardet module is available, encoding will be guessed. """ if hasattr(self, '_text') and self._text: return self._text if not self.content: return u'...	[ "def", "text", "(", "self", ")", ":", "if", "hasattr", "(", "self", ",", "'_text'", ")", "and", "self", ".", "_text", ":", "return", "self", ".", "_text", "if", "not", "self", ".", "content", ":", "return", "u''", "if", "isinstance", "(", "self", "...	30.793103	0.002172
def save(self, calc, session): ''' Saves tilde_obj into the database NB: this is the PUBLIC method @returns checksum, error ''' checksum = calc.get_checksum() try: existing_calc = session.query(model.Calculation).filter(model.Calculation.checksum == c...	[ "def", "save", "(", "self", ",", "calc", ",", "session", ")", ":", "checksum", "=", "calc", ".", "get_checksum", "(", ")", "try", ":", "existing_calc", "=", "session", ".", "query", "(", "model", ".", "Calculation", ")", ".", "filter", "(", "model", ...	54.381944	0.0153
def get_instance(self, payload): """ Build an instance of OriginationUrlInstance :param dict payload: Payload response from the API :returns: twilio.rest.trunking.v1.trunk.origination_url.OriginationUrlInstance :rtype: twilio.rest.trunking.v1.trunk.origination_url.OriginationUr...	[ "def", "get_instance", "(", "self", ",", "payload", ")", ":", "return", "OriginationUrlInstance", "(", "self", ".", "_version", ",", "payload", ",", "trunk_sid", "=", "self", ".", "_solution", "[", "'trunk_sid'", "]", ",", ")" ]	43.5	0.011261
def findAll(self, tag_name, params=None, fn=None, case_sensitive=False): """ Search for elements by their parameters using `Depth-first algorithm <http://en.wikipedia.org/wiki/Depth-first_search>`_. Args: tag_name (str): Name of the tag you are looking for. Set to "" if ...	[ "def", "findAll", "(", "self", ",", "tag_name", ",", "params", "=", "None", ",", "fn", "=", "None", ",", "case_sensitive", "=", "False", ")", ":", "output", "=", "[", "]", "if", "self", ".", "isAlmostEqual", "(", "tag_name", ",", "params", ",", "fn",...	37.290323	0.001686
def _write_median_norm(self, norms:[])->None: "Writes the median norm of the gradients to Tensorboard." median_norm = statistics.median(norms) self._add_gradient_scalar('median_norm', scalar_value=median_norm)	[ "def", "_write_median_norm", "(", "self", ",", "norms", ":", "[", "]", ")", "->", "None", ":", "median_norm", "=", "statistics", ".", "median", "(", "norms", ")", "self", ".", "_add_gradient_scalar", "(", "'median_norm'", ",", "scalar_value", "=", "median_no...	57.5	0.017167
def clean_core(self, config_file, region=None, profile_name=None): """ Clean all Core related provisioned artifacts from both the local file and the AWS Greengrass service. :param config_file: config file containing the core to clean :param region: the region in which the core s...	[ "def", "clean_core", "(", "self", ",", "config_file", ",", "region", "=", "None", ",", "profile_name", "=", "None", ")", ":", "config", "=", "GroupConfigFile", "(", "config_file", "=", "config_file", ")", "if", "region", "is", "None", ":", "region", "=", ...	40.344828	0.001669
def events(self): # type: () -> Generator[Event, None, None] """ Return a generator that provides any events that have been generated by protocol activity. :returns: generator of :class:`Event <wsproto.events.Event>` subclasses """ while self._events: ...	[ "def", "events", "(", "self", ")", ":", "# type: () -> Generator[Event, None, None]", "while", "self", ".", "_events", ":", "yield", "self", ".", "_events", ".", "popleft", "(", ")", "try", ":", "for", "frame", "in", "self", ".", "_proto", ".", "received_fra...	40.772727	0.001633
def live(self): """Get a live stream of timeseries readings. This returns an Iterable over a live stream of readings. Note that the result will need to be closed since the system can not tell when you'll be done with it. You can either call ``close`` on the endpoint when you're...	[ "def", "live", "(", "self", ")", ":", "session", "=", "self", ".", "_session", "url", "=", "\"{}/live\"", ".", "format", "(", "self", ".", "_base_url", ")", "supported_params", "=", "frozenset", "(", "[", "'filter[port]'", "]", ")", "params", "=", "{", ...	32.40625	0.001873
def _handle_end_way(self): """ Handle closing way element """ self._result.append(Way(result=self._result, **self._curr)) self._curr = {}	[ "def", "_handle_end_way", "(", "self", ")", ":", "self", ".", "_result", ".", "append", "(", "Way", "(", "result", "=", "self", ".", "_result", ",", "", "", "self", ".", "_curr", ")", ")", "self", ".", "_curr", "=", "{", "}" ]	28.666667	0.011299
def deriv(self, x: str, ctype: ContentType) -> SchemaPattern: """Return derivative of the receiver.""" return (self.pattern.deriv(x, ctype) if self.check_when() else NotAllowed())	[ "def", "deriv", "(", "self", ",", "x", ":", "str", ",", "ctype", ":", "ContentType", ")", "->", "SchemaPattern", ":", "return", "(", "self", ".", "pattern", ".", "deriv", "(", "x", ",", "ctype", ")", "if", "self", ".", "check_when", "(", ")", "else...	52	0.009479
def lists(self, value, key=None): """ Get a list with the values of a given key :rtype: list """ results = map(lambda x: x[value], self._items) return list(results)	[ "def", "lists", "(", "self", ",", "value", ",", "key", "=", "None", ")", ":", "results", "=", "map", "(", "lambda", "x", ":", "x", "[", "value", "]", ",", "self", ".", "_items", ")", "return", "list", "(", "results", ")" ]	22.888889	0.009346
def getargspec_permissive(func): """ An `inspect.getargspec` with a relaxed sanity check to support Cython. Motivation: A Cython-compiled function is not an instance of Python's types.FunctionType. That is the sanity check the standard Py2 library uses in `inspect.getargspec()`....	[ "def", "getargspec_permissive", "(", "func", ")", ":", "if", "inspect", ".", "ismethod", "(", "func", ")", ":", "func", "=", "func", ".", "im_func", "# Py2 Stdlib uses isfunction(func) which is too strict for Cython-compiled", "# functions though such have perfectly usable fu...	46.148148	0.000786
def get_sdk_vc_script(self,host_arch, target_arch): """ Return the script to initialize the VC compiler installed by SDK """ if (host_arch == 'amd64' and target_arch == 'x86'): # No cross tools needed compiling 32 bits on 64 bit machine host_arch=target_arch arc...	[ "def", "get_sdk_vc_script", "(", "self", ",", "host_arch", ",", "target_arch", ")", ":", "if", "(", "host_arch", "==", "'amd64'", "and", "target_arch", "==", "'x86'", ")", ":", "# No cross tools needed compiling 32 bits on 64 bit machine", "host_arch", "=", "target_ar...	44.333333	0.018405
def decode(self, envelope, session, private_key=None, oaep_hash_fn_name=None, mgf1_hash_fn_name=None, **kwargs): """ :meth:`.WMessengerOnionCoderLayerProto.decode` method implementation. :param envelope: original envelope :param session: original session :param private_key: private key to decrypt :param oaep...	[ "def", "decode", "(", "self", ",", "envelope", ",", "session", ",", "private_key", "=", "None", ",", "oaep_hash_fn_name", "=", "None", ",", "mgf1_hash_fn_name", "=", "None", ",", "", "", "kwargs", ")", ":", "message", "=", "private_key", ".", "decrypt", ...	41.25	0.025185
def _wait_for_pod_deletion(self, daemonset_pods=None): """ Wait until this K8sNode has evicted all its K8sPods. :param daemonset_pods: A list of K8sPods on this K8sNode that are managed by a K8sDaemonSet. :return: None """ pods = self._pod_inventory() ...	[ "def", "_wait_for_pod_deletion", "(", "self", ",", "daemonset_pods", "=", "None", ")", ":", "pods", "=", "self", ".", "_pod_inventory", "(", ")", "start_time", "=", "time", ".", "time", "(", ")", "while", "len", "(", "pods", ")", ">", "0", ":", "if", ...	31.111111	0.008666
def daily2D(inst, bin1, label1, bin2, label2, data_label, gate, returnBins=False): """2D Daily Occurrence Probability of data_label > gate over a season. If data_label is greater than gate at least once per day, then a 100% occurrence probability results.Season delineated by the bounds attached to...	[ "def", "daily2D", "(", "inst", ",", "bin1", ",", "label1", ",", "bin2", ",", "label2", ",", "data_label", ",", "gate", ",", "returnBins", "=", "False", ")", ":", "return", "_occurrence2D", "(", "inst", ",", "bin1", ",", "label1", ",", "bin2", ",", "l...	38.95	0.008766
def parse_toc(html_content): """ Parse TOC of HTML content if the SHOW_TOC config is true. :param html_content: raw HTML content :return: tuple(processed HTML, toc list, toc HTML unordered list) """ from flask import current_app from veripress.model.toc import HtmlTocParser if current_...	[ "def", "parse_toc", "(", "html_content", ")", ":", "from", "flask", "import", "current_app", "from", "veripress", ".", "model", ".", "toc", "import", "HtmlTocParser", "if", "current_app", ".", "config", "[", "'SHOW_TOC'", "]", ":", "toc_parser", "=", "HtmlTocP...	36.136364	0.001225
def transcript_associated_plot (self): """ Plot a bargraph showing the Transcript-associated reads """ # Plot bar graph of groups keys = OrderedDict() keys['Exonic Rate'] = { 'name': 'Exonic', 'color': '#2f7ed8' } keys['Intronic Rate'] = { 'name': 'Intronic', 'color': '#8bbc21'...	[ "def", "transcript_associated_plot", "(", "self", ")", ":", "# Plot bar graph of groups", "keys", "=", "OrderedDict", "(", ")", "keys", "[", "'Exonic Rate'", "]", "=", "{", "'name'", ":", "'Exonic'", ",", "'color'", ":", "'#2f7ed8'", "}", "keys", "[", "'Intron...	43.964286	0.015103
def set_password(name, password): ''' Set the password for a named user (insecure, the password will be in the process list while the command is running) :param str name: The name of the local user, which is assumed to be in the local directory service :param str password: The plaintext pa...	[ "def", "set_password", "(", "name", ",", "password", ")", ":", "cmd", "=", "\"dscl . -passwd /Users/{0} '{1}'\"", ".", "format", "(", "name", ",", "password", ")", "try", ":", "salt", ".", "utils", ".", "mac_utils", ".", "execute_return_success", "(", "cmd", ...	32.033333	0.00101
def get_domains(self): """ Retrieves the domains of the users from elastic. """ search = User.search() search.aggs.bucket('domains', 'terms', field='domain', order={'_count': 'desc'}, size=100) response = search.execute() return [entry.key for entry in respons...	[ "def", "get_domains", "(", "self", ")", ":", "search", "=", "User", ".", "search", "(", ")", "search", ".", "aggs", ".", "bucket", "(", "'domains'", ",", "'terms'", ",", "field", "=", "'domain'", ",", "order", "=", "{", "'_count'", ":", "'desc'", "}"...	43	0.008547

def create_new_scheme(self): """Creates a new color scheme with a custom name.""" names = self.get_option('names') custom_names = self.get_option('custom_names', []) # Get the available number this new color scheme counter = len(custom_names) - 1 custom_index = [int(n.sp...

[ "def", "create_new_scheme", "(", "self", ")", ":", "names", "=", "self", ".", "get_option", "(", "'names'", ")", "custom_names", "=", "self", ".", "get_option", "(", "'custom_names'", ",", "[", "]", ")", "# Get the available number this new color scheme", "counter...

43.022727

0.001033

def Many2ManyThroughModel(field): '''Create a Many2Many through model with two foreign key fields and a CompositeFieldId depending on the two foreign keys.''' from stdnet.odm import ModelType, StdModel, ForeignKey, CompositeIdField name_model = field.model._meta.name name_relmodel = field.relmodel....

[ "def", "Many2ManyThroughModel", "(", "field", ")", ":", "from", "stdnet", ".", "odm", "import", "ModelType", ",", "StdModel", ",", "ForeignKey", ",", "CompositeIdField", "name_model", "=", "field", ".", "model", ".", "_meta", ".", "name", "name_relmodel", "=",...

42.578947

0.000604

def Overlay_setShowDebugBorders(self, show): """ Function path: Overlay.setShowDebugBorders Domain: Overlay Method name: setShowDebugBorders Parameters: Required arguments: 'show' (type: boolean) -> True for showing debug borders No return value. Description: Requests that backend show...

[ "def", "Overlay_setShowDebugBorders", "(", "self", ",", "show", ")", ":", "assert", "isinstance", "(", "show", ",", "(", "bool", ",", ")", ")", ",", "\"Argument 'show' must be of type '['bool']'. Received type: '%s'\"", "%", "type", "(", "show", ")", "subdom_funcs",...

30.210526

0.047297

def build_specfile_filesection(spec, files): """ builds the %file section of the specfile """ str = '%files\n' if 'X_RPM_DEFATTR' not in spec: spec['X_RPM_DEFATTR'] = '(-,root,root)' str = str + '%%defattr %s\n' % spec['X_RPM_DEFATTR'] supported_tags = { 'PACKAGING_CONFIG' ...

[ "def", "build_specfile_filesection", "(", "spec", ",", "files", ")", ":", "str", "=", "'%files\\n'", "if", "'X_RPM_DEFATTR'", "not", "in", "spec", ":", "spec", "[", "'X_RPM_DEFATTR'", "]", "=", "'(-,root,root)'", "str", "=", "str", "+", "'%%defattr %s\\n'", "%...

31.575

0.010753

def _rgb_triangle(ax, r_label, g_label, b_label, loc): """ Draw an RGB triangle legend on the desired axis """ if not loc in range(1, 11): loc = 2 from mpl_toolkits.axes_grid1.inset_locator import inset_axes inset_ax = inset_axes(ax, width=1, height=1, loc=lo...

[ "def", "_rgb_triangle", "(", "ax", ",", "r_label", ",", "g_label", ",", "b_label", ",", "loc", ")", ":", "if", "not", "loc", "in", "range", "(", "1", ",", "11", ")", ":", "loc", "=", "2", "from", "mpl_toolkits", ".", "axes_grid1", ".", "inset_locator...

43.042553

0.00145

def exists_alias(self, using=None, **kwargs): """ Return a boolean indicating whether given alias exists for this index. Any additional keyword arguments will be passed to ``Elasticsearch.indices.exists_alias`` unchanged. """ return self._get_connection(using).indices.ex...

[ "def", "exists_alias", "(", "self", ",", "using", "=", "None", ",", "*", "*", "kwargs", ")", ":", "return", "self", ".", "_get_connection", "(", "using", ")", ".", "indices", ".", "exists_alias", "(", "index", "=", "self", ".", "_name", ",", "*", "*"...

43.875

0.00838

def point_on_line(ab, c): ''' point_on_line((a,b), c) yields True if point x is on line (a,b) and False otherwise. ''' (a,b) = ab abc = [np.asarray(u) for u in (a,b,c)] if any(len(u.shape) == 2 for u in abc): (a,b,c) = [np.reshape(u,(len(u),-1)) for u in abc] else: ...

[ "def", "point_on_line", "(", "ab", ",", "c", ")", ":", "(", "a", ",", "b", ")", "=", "ab", "abc", "=", "[", "np", ".", "asarray", "(", "u", ")", "for", "u", "in", "(", "a", ",", "b", ",", "c", ")", "]", "if", "any", "(", "len", "(", "u"...

43.666667

0.020927

def maximumBelow(requestContext, seriesList, n): """ Takes one metric or a wildcard seriesList followed by a constant n. Draws only the metrics with a maximum value below n. Example:: &target=maximumBelow(system.interface.eth*.packetsSent,1000) This would only display interfaces which alw...

[ "def", "maximumBelow", "(", "requestContext", ",", "seriesList", ",", "n", ")", ":", "results", "=", "[", "]", "for", "series", "in", "seriesList", ":", "val", "=", "safeMax", "(", "series", ")", "if", "val", "is", "None", "or", "val", "<=", "n", ":"...

28.777778

0.001869

def filtered(self, step_names): """Returns a "filtered" version of this graph.""" return Graph(steps=self.steps, dag=self.dag.filter(step_names))

[ "def", "filtered", "(", "self", ",", "step_names", ")", ":", "return", "Graph", "(", "steps", "=", "self", ".", "steps", ",", "dag", "=", "self", ".", "dag", ".", "filter", "(", "step_names", ")", ")" ]

53

0.012422

def _dphiTilde(self, r, N, L): """ NAME: _dphiTilde PURPOSE: Evaluate the derivative of phiTilde with respect to r INPUT: r - spherical radius N - size of the N dimension L - size of the L dimension OUTPUT: the der...

[ "def", "_dphiTilde", "(", "self", ",", "r", ",", "N", ",", "L", ")", ":", "a", "=", "self", ".", "_a", "l", "=", "nu", ".", "arange", "(", "0", ",", "L", ",", "dtype", "=", "float", ")", "[", "nu", ".", "newaxis", ",", ":", "]", "n", "=",...

35.818182

0.017305

def load_annotations(self, aname, sep=','): """Loads cell annotations. Loads the cell annoations specified by the 'aname' path. Parameters ---------- aname - string The path to the annotations file. First column should be cell IDs and second column shoul...

[ "def", "load_annotations", "(", "self", ",", "aname", ",", "sep", "=", "','", ")", ":", "ann", "=", "pd", ".", "read_csv", "(", "aname", ")", "cell_names", "=", "np", ".", "array", "(", "list", "(", "self", ".", "adata", ".", "obs_names", ")", ")",...

38.3

0.001698

def _loci_to_arr(loci, taxdict, mindict): """ return a frequency array from a loci file for all loci with taxa from taxdict and min coverage from mindict. """ ## make the array (4 or 5) and a mask array to remove loci without cov nloci = len(loci) maxlen = np.max(np.array([len(locus.split...

[ "def", "_loci_to_arr", "(", "loci", ",", "taxdict", ",", "mindict", ")", ":", "## make the array (4 or 5) and a mask array to remove loci without cov", "nloci", "=", "len", "(", "loci", ")", "maxlen", "=", "np", ".", "max", "(", "np", ".", "array", "(", "[", "...

36.957983

0.009079

def list_uplink_dvportgroup(dvs, service_instance=None): ''' Returns the uplink portgroup of a distributed virtual switch. dvs Name of the DVS containing the portgroup. service_instance Service instance (vim.ServiceInstance) of the vCenter. Default is None. .. code-block::...

[ "def", "list_uplink_dvportgroup", "(", "dvs", ",", "service_instance", "=", "None", ")", ":", "proxy_type", "=", "get_proxy_type", "(", ")", "if", "proxy_type", "==", "'esxdatacenter'", ":", "datacenter", "=", "__salt__", "[", "'esxdatacenter.get_details'", "]", "...

39.214286

0.000889

def WriteApprovalRequest(self, approval_request): """Writes an approval request object.""" approvals = self.approvals_by_username.setdefault( approval_request.requestor_username, {}) approval_id = str(os.urandom(16).encode("hex")) cloned_request = approval_request.Copy() cloned_request.time...

[ "def", "WriteApprovalRequest", "(", "self", ",", "approval_request", ")", ":", "approvals", "=", "self", ".", "approvals_by_username", ".", "setdefault", "(", "approval_request", ".", "requestor_username", ",", "{", "}", ")", "approval_id", "=", "str", "(", "os"...

38

0.002141

def delete_record(name, zone, record_type, identifier=None, all_records=False, region=None, key=None, keyid=None, profile=None, wait_for_sync=True, split_dns=False, private_zone=False, retry_on_rate_limit=None, rate_limit_retries=None, retry_on_err...

[ "def", "delete_record", "(", "name", ",", "zone", ",", "record_type", ",", "identifier", "=", "None", ",", "all_records", "=", "False", ",", "region", "=", "None", ",", "key", "=", "None", ",", "keyid", "=", "None", ",", "profile", "=", "None", ",", ...

38.135593

0.000867

def literalize_string(content, is_unicode=False): r'''Literalize a string content. Examples: >>> print literalize_string('str') 'str' >>> print literalize_string('\'str\'') "'str'" >>> print literalize_string('\"\'str\'\"') '"\'str\'"' ''' quote_mark = "'" if "'" in conten...

[ "def", "literalize_string", "(", "content", ",", "is_unicode", "=", "False", ")", ":", "quote_mark", "=", "\"'\"", "if", "\"'\"", "in", "content", ":", "quote_mark", "=", "'\"'", "if", "'\"'", "in", "content", ":", "quote_mark", "=", "\"'\"", "content", "=...

22.625

0.001767

def _check_euk_contamination(self, hmm_hit_tables): ''' check_euk_contamination - Check output HMM tables hits reads that hit the 18S HMM with a higher bit score. Parameters ---------- hmm_hit_tables : array Array of paths to the out...

[ "def", "_check_euk_contamination", "(", "self", ",", "hmm_hit_tables", ")", ":", "euk_hit_table", "=", "HMMreader", "(", "hmm_hit_tables", ".", "pop", "(", "-", "1", ")", ")", "other_hit_tables", "=", "[", "HMMreader", "(", "x", ")", "for", "x", "in", "hmm...

36.291667

0.002236

def all_errors(self, joiner="; "): """Returns a string representation of all errors recorded for the instance.""" parts = [] for pname, errs in self.errors.items(): for err in errs: parts.append("{0}: {1}".format(pname, err)) return joiner.join(parts)

[ "def", "all_errors", "(", "self", ",", "joiner", "=", "\"; \"", ")", ":", "parts", "=", "[", "]", "for", "pname", ",", "errs", "in", "self", ".", "errors", ".", "items", "(", ")", ":", "for", "err", "in", "errs", ":", "parts", ".", "append", "(",...

39.285714

0.010676

def generate_key(url, page_number): """ >>> url_a = 'http://localhost:5009/search?keywords=a' >>> generate_key(url_a, 10) 'http://localhost:5009/search?keywords=a&page=10' >>> url_b = 'http://localhost:5009/search?keywords=b&page=1' >>> generate_key(url_b, 10) 'http://localhost:5009/search?k...

[ "def", "generate_key", "(", "url", ",", "page_number", ")", ":", "index", "=", "url", ".", "rfind", "(", "'page'", ")", "if", "index", "!=", "-", "1", ":", "result", "=", "url", "[", "0", ":", "index", "]", "result", "+=", "'page=%s'", "%", "page_n...

32

0.001786

def parse(self, msg, name): """Parses the message. We check that the message is properly formatted. :param msg: a json-encoded value containing a JWS or JWE+JWS token :raises InvalidMessage: if the message cannot be parsed or validated :returns: A verified payload """...

[ "def", "parse", "(", "self", ",", "msg", ",", "name", ")", ":", "try", ":", "jtok", "=", "JWT", "(", "jwt", "=", "msg", ")", "except", "Exception", "as", "e", ":", "raise", "InvalidMessage", "(", "'Failed to parse message: %s'", "%", "str", "(", "e", ...

36.196078

0.001055

def messageRemote(self, cmdObj, consequence=None, **args): """ Send a message to the peer identified by the target, via the given L{Command} object and arguments. @param cmdObj: a L{twisted.protocols.amp.Command}, whose serialized form will be the message. @param conseq...

[ "def", "messageRemote", "(", "self", ",", "cmdObj", ",", "consequence", "=", "None", ",", "*", "*", "args", ")", ":", "messageBox", "=", "cmdObj", ".", "makeArguments", "(", "args", ",", "self", ")", "messageBox", "[", "COMMAND", "]", "=", "cmdObj", "....

39.173913

0.002167

def binglookup(w1i, w2i): """ Bingham statistics lookup table. """ K = {'0.06': {'0.02': ['-25.58', '-8.996'], '0.06': ['-9.043', '-9.043'], '0.04': ['-13.14', '-9.019']}, '0.22': {'0.08': ['-6.944', '-2.644'], '0.02': ['-25.63', '-2.712'], '0.20': ['-2.649', '-2.354'], '0.06': ['-9.027', '-2.673'], '0....

[ "def", "binglookup", "(", "w1i", ",", "w2i", ")", ":", "K", "=", "{", "'0.06'", ":", "{", "'0.02'", ":", "[", "'-25.58'", ",", "'-8.996'", "]", ",", "'0.06'", ":", "[", "'-9.043'", ",", "'-9.043'", "]", ",", "'0.04'", ":", "[", "'-13.14'", ",", "...

465.090909

0.000293

def _as_array_or_item(data): """Return the given values as a numpy array, or as an individual item if it's a 0d datetime64 or timedelta64 array. Importantly, this function does not copy data if it is already an ndarray - otherwise, it will not be possible to update Variable values in place. This f...

[ "def", "_as_array_or_item", "(", "data", ")", ":", "data", "=", "np", ".", "asarray", "(", "data", ")", "if", "data", ".", "ndim", "==", "0", ":", "if", "data", ".", "dtype", ".", "kind", "==", "'M'", ":", "data", "=", "np", ".", "datetime64", "(...

38.142857

0.001218

def create_random(magf, magf_params, errf, errf_params, timef=np.linspace, timef_params=None, size=DEFAULT_SIZE, id=None, ds_name=DS_NAME, description=DESCRIPTION, bands=BANDS, metadata=METADATA): """Generate a data with any given random function. Parameter...

[ "def", "create_random", "(", "magf", ",", "magf_params", ",", "errf", ",", "errf_params", ",", "timef", "=", "np", ".", "linspace", ",", "timef_params", "=", "None", ",", "size", "=", "DEFAULT_SIZE", ",", "id", "=", "None", ",", "ds_name", "=", "DS_NAME"...

31.424658

0.000423

def stop(name, vmid=None, call=None): ''' Stop a node ("pulling the plug"). CLI Example: .. code-block:: bash salt-cloud -a stop mymachine ''' if call != 'action': raise SaltCloudSystemExit( 'The stop action must be called with -a or --action.' ) if no...

[ "def", "stop", "(", "name", ",", "vmid", "=", "None", ",", "call", "=", "None", ")", ":", "if", "call", "!=", "'action'", ":", "raise", "SaltCloudSystemExit", "(", "'The stop action must be called with -a or --action.'", ")", "if", "not", "set_vm_status", "(", ...

26.590909

0.00165

def touch(path, times=None): """Equivalent of unix `touch path`. :API: public :path: The file to touch. :times Either a tuple of (atime, mtime) or else a single time to use for both. If not specified both atime and mtime are updated to the current time. """ if times: if len(times) > ...

[ "def", "touch", "(", "path", ",", "times", "=", "None", ")", ":", "if", "times", ":", "if", "len", "(", "times", ")", ">", "2", ":", "raise", "ValueError", "(", "'times must either be a tuple of (atime, mtime) or else a single time value '", "'to use for both.'", ...

29.368421

0.013889

def option(*param_decls, **attrs): """Attach an option to the command. All positional arguments are passed as parameter declarations to :class:`Option`, all keyword arguments are forwarded unchanged. This is equivalent to creating an :class:`Option` instance manually and attaching it to the :attr:`...

[ "def", "option", "(", "*", "param_decls", ",", "*", "*", "attrs", ")", ":", "def", "decorator", "(", "f", ")", ":", "_param_memo", "(", "f", ",", "GandiOption", "(", "param_decls", ",", "*", "*", "attrs", ")", ")", "return", "f", "return", "decorator...

38

0.002141

def d2AIbr_dV2(dIbr_dVa, dIbr_dVm, Ibr, Ybr, V, lam): """ Computes 2nd derivatives of |complex current|**2 w.r.t. V. """ diaglam = spdiag(lam) diagIbr_conj = spdiag(conj(Ibr)) Iaa, Iav, Iva, Ivv = d2Ibr_dV2(Ybr, V, diagIbr_conj * lam) Haa = 2 * ( Iaa + dIbr_dVa.T * diaglam * conj(dIbr_dVa) ).r...

[ "def", "d2AIbr_dV2", "(", "dIbr_dVa", ",", "dIbr_dVm", ",", "Ibr", ",", "Ybr", ",", "V", ",", "lam", ")", ":", "diaglam", "=", "spdiag", "(", "lam", ")", "diagIbr_conj", "=", "spdiag", "(", "conj", "(", "Ibr", ")", ")", "Iaa", ",", "Iav", ",", "I...

39.285714

0.015986

def handle_args_and_set_context(args): """ Args: args: the command line args, probably passed from main() as sys.argv[1:] Returns: a populated EFPWContext object Raises: RuntimeError: if repo or branch isn't as spec'd in ef_config.EF_REPO and ef_config.EF_REPO_BRANCH ValueError: if a par...

[ "def", "handle_args_and_set_context", "(", "args", ")", ":", "parser", "=", "argparse", ".", "ArgumentParser", "(", ")", "parser", ".", "add_argument", "(", "\"service\"", ",", "help", "=", "\"name of service password is being generated for\"", ")", "parser", ".", "...

47.944444

0.017604

def build_trees(fclade_counts, namedict): """ A subfunc of consensus_tree(). Build an unrooted consensus tree from filtered clade counts. """ ## storage nodes = {} idxarr = np.arange(len(fclade_counts[0][0])) queue = [] ## create dict of clade counts and set keys countdict =...

[ "def", "build_trees", "(", "fclade_counts", ",", "namedict", ")", ":", "## storage", "nodes", "=", "{", "}", "idxarr", "=", "np", ".", "arange", "(", "len", "(", "fclade_counts", "[", "0", "]", "[", "0", "]", ")", ")", "queue", "=", "[", "]", "## c...

32.714286

0.008008

def fix_orientation(self, tour): """ Test each scaffold if flipping will increass longest monotonic chain length. """ orientations = dict(tour) # old configuration here scaffold_oo = defaultdict(list) scaffolds, oos = zip(*tour) for mlg in self.linkage_gr...

[ "def", "fix_orientation", "(", "self", ",", "tour", ")", ":", "orientations", "=", "dict", "(", "tour", ")", "# old configuration here", "scaffold_oo", "=", "defaultdict", "(", "list", ")", "scaffolds", ",", "oos", "=", "zip", "(", "*", "tour", ")", "for",...

37

0.001463

def toimage(arr, high=255, low=0, cmin=None, cmax=None, pal=None, mode=None, channel_axis=None): """Takes a numpy array and returns a PIL image. The mode of the PIL image depends on the array shape and the `pal` and `mode` keywords. For 2-D arrays, if `pal` is a valid (N,3) byte-array givi...

[ "def", "toimage", "(", "arr", ",", "high", "=", "255", ",", "low", "=", "0", ",", "cmin", "=", "None", ",", "cmax", "=", "None", ",", "pal", "=", "None", ",", "mode", "=", "None", ",", "channel_axis", "=", "None", ")", ":", "data", "=", "asarra...

36.848214

0.000236

async def send_ssh_job_info(self, job_id: BackendJobId, host: str, port: int, key: str): """ Send info about the SSH debug connection to the backend/client. Must be called *at most once* for each job. :exception JobNotRunningException: is raised when the job is not running anymore (send_job_resu...

[ "async", "def", "send_ssh_job_info", "(", "self", ",", "job_id", ":", "BackendJobId", ",", "host", ":", "str", ",", "port", ":", "int", ",", "key", ":", "str", ")", ":", "if", "job_id", "not", "in", "self", ".", "__running_job", ":", "raise", "JobNotRu...

64.583333

0.008906

def ndimage_to_list(image): """ Split a n dimensional ANTsImage into a list of n-1 dimensional ANTsImages Arguments --------- image : ANTsImage n-dimensional image to split Returns ------- list of ANTsImage types Example ------- >>> import ants >>> image = ...

[ "def", "ndimage_to_list", "(", "image", ")", ":", "inpixeltype", "=", "image", ".", "pixeltype", "dimension", "=", "image", ".", "dimension", "components", "=", "1", "imageShape", "=", "image", ".", "shape", "nSections", "=", "imageShape", "[", "dimension", ...

31.446809

0.021654

def coverage_lineplot (self): """ Make HTML for coverage line plots """ # Add line graph to section data = list() data_labels = list() if len(self.rna_seqc_norm_high_cov) > 0: data.append(self.rna_seqc_norm_high_cov) data_labels.append({'name': 'High Expre...

[ "def", "coverage_lineplot", "(", "self", ")", ":", "# Add line graph to section", "data", "=", "list", "(", ")", "data_labels", "=", "list", "(", ")", "if", "len", "(", "self", ".", "rna_seqc_norm_high_cov", ")", ">", "0", ":", "data", ".", "append", "(", ...

43.387097

0.009455

def example(): """ Some example usage of different twilio resources. """ client = Client(ACCOUNT_SID, AUTH_TOKEN) # Get all messages all_messages = client.messages.list() print('There are {} messages in your account.'.format(len(all_messages))) # Get only last 10 messages... some_m...

[ "def", "example", "(", ")", ":", "client", "=", "Client", "(", "ACCOUNT_SID", ",", "AUTH_TOKEN", ")", "# Get all messages", "all_messages", "=", "client", ".", "messages", ".", "list", "(", ")", "print", "(", "'There are {} messages in your account.'", ".", "for...

32.84375

0.001848

def _dedent(text): """Remove common indentation from each line in a text block. When text block is a single line, return text block. Otherwise determine common indentation from last line, strip common indentation from each line, and return text block consisting of inner lines (d...

[ "def", "_dedent", "(", "text", ")", ":", "lines", "=", "text", ".", "split", "(", "'\\n'", ")", "if", "len", "(", "lines", ")", "==", "1", ":", "indent", "=", "0", "elif", "lines", "[", "0", "]", ".", "strip", "(", ")", ":", "raise", "ValueErro...

35.189189

0.001495

def _get_exposure(fname, stop=None): """ :param fname: path of the XML file containing the exposure :param stop: node at which to stop parsing (or None) :returns: a pair (Exposure instance, list of asset nodes) """ [exposure] = nrml.read(fname, stop=stop) if not expos...

[ "def", "_get_exposure", "(", "fname", ",", "stop", "=", "None", ")", ":", "[", "exposure", "]", "=", "nrml", ".", "read", "(", "fname", ",", "stop", "=", "stop", ")", "if", "not", "exposure", ".", "tag", ".", "endswith", "(", "'exposureModel'", ")", ...

40.540816

0.000246

def insert_one(self, validate=True): """Insert this document. The `validate` argument translates to the inverse of the `bypass_document_validation` PyMongo option. https://api.mongodb.com/python/current/api/pymongo/collection.html#pymongo.collection.Collection.insert_one """ kw = {} kw['bypass_docu...

[ "def", "insert_one", "(", "self", ",", "validate", "=", "True", ")", ":", "kw", "=", "{", "}", "kw", "[", "'bypass_document_validation'", "]", "=", "not", "validate", "collection", "=", "self", ".", "get_collection", "(", "kw", ".", "pop", "(", "'source'...

34.230769

0.041575

def to_sql(frame, name, con, schema=None, if_exists='fail', index=True, index_label=None, chunksize=None, dtype=None, method=None): """ Write records stored in a DataFrame to a SQL database. Parameters ---------- frame : DataFrame, Series name : string Name of SQL table. ...

[ "def", "to_sql", "(", "frame", ",", "name", ",", "con", ",", "schema", "=", "None", ",", "if_exists", "=", "'fail'", ",", "index", "=", "True", ",", "index_label", "=", "None", ",", "chunksize", "=", "None", ",", "dtype", "=", "None", ",", "method", ...

46.754098

0.000343

def service_list(service=None, key_name=None, **kwargs): """General list function for Google APIs.""" resp_list = [] req = service.list(**kwargs) while req is not None: resp = req.execute() if key_name and key_name in resp: resp_list.extend(resp[key_name]) else: ...

[ "def", "service_list", "(", "service", "=", "None", ",", "key_name", "=", "None", ",", "*", "*", "kwargs", ")", ":", "resp_list", "=", "[", "]", "req", "=", "service", ".", "list", "(", "*", "*", "kwargs", ")", "while", "req", "is", "not", "None", ...

33.166667

0.001629

def create( meta_schema, validators=(), version=None, default_types=None, type_checker=None, id_of=_id_of, ): """ Create a new validator class. Arguments: meta_schema (collections.Mapping): the meta schema for the new validator class validators (collec...

[ "def", "create", "(", "meta_schema", ",", "validators", "=", "(", ")", ",", "version", "=", "None", ",", "default_types", "=", "None", ",", "type_checker", "=", "None", ",", "id_of", "=", "_id_of", ",", ")", ":", "if", "default_types", "is", "not", "No...

32.398104

0.000142

def format_help(self): """ Strip out { } redundant subcommand section. """ help_msg = super(FocusArgParser, self).format_help() return re.sub(r'\{.+\}', '', help_msg)

[ "def", "format_help", "(", "self", ")", ":", "help_msg", "=", "super", "(", "FocusArgParser", ",", "self", ")", ".", "format_help", "(", ")", "return", "re", ".", "sub", "(", "r'\\{.+\\}'", ",", "''", ",", "help_msg", ")" ]

39.6

0.009901

def roll(self, shift): """shift vector """ self._saved = LimitedSizeDict(size_limit=2**5) new_arr = zeros(len(self), dtype=self.dtype) if shift < 0: shift = shift - len(self) * (shift // len(self)) if shift == 0: return n...

[ "def", "roll", "(", "self", ",", "shift", ")", ":", "self", ".", "_saved", "=", "LimitedSizeDict", "(", "size_limit", "=", "2", "**", "5", ")", "new_arr", "=", "zeros", "(", "len", "(", "self", ")", ",", "dtype", "=", "self", ".", "dtype", ")", "...

28.875

0.010482

def list(self, roomId=None, personId=None, personEmail=None, max=None, **request_parameters): """List room memberships. By default, lists memberships for rooms to which the authenticated user belongs. Use query parameters to filter the response. Use `roomId` to li...

[ "def", "list", "(", "self", ",", "roomId", "=", "None", ",", "personId", "=", "None", ",", "personEmail", "=", "None", ",", "max", "=", "None", ",", "*", "*", "request_parameters", ")", ":", "check_type", "(", "roomId", ",", "basestring", ")", "check_t...

40.672131

0.001181

def _G(self, x, p): """ analytic solution of the 2d projected mass integral integral: 2 * pi * x * kappa * dx :param x: :param p: :return: """ prefactor = (p + p ** 3) ** -1 * p if isinstance(x, np.ndarray): inds0 = np.where(x * p ==...

[ "def", "_G", "(", "self", ",", "x", ",", "p", ")", ":", "prefactor", "=", "(", "p", "+", "p", "**", "3", ")", "**", "-", "1", "*", "p", "if", "isinstance", "(", "x", ",", "np", ".", "ndarray", ")", ":", "inds0", "=", "np", ".", "where", "...

40.8

0.009574

def _map_arg_names(source, mapping): """Map one set of keys to another.""" return {cartopy_name: source[cf_name] for cartopy_name, cf_name in mapping if cf_name in source}

[ "def", "_map_arg_names", "(", "source", ",", "mapping", ")", ":", "return", "{", "cartopy_name", ":", "source", "[", "cf_name", "]", "for", "cartopy_name", ",", "cf_name", "in", "mapping", "if", "cf_name", "in", "source", "}" ]

50

0.014778

def move_to(self, start, end): """Moves the `Polynucleotide` to lie on the `start` and `end` vector. Parameters ---------- start : 3D Vector (tuple or list or numpy.array) The coordinate of the start of the helix primitive. end : 3D Vector (tuple or list or numpy.arr...

[ "def", "move_to", "(", "self", ",", "start", ",", "end", ")", ":", "start", "=", "numpy", ".", "array", "(", "start", ")", "end", "=", "numpy", ".", "array", "(", "end", ")", "if", "numpy", ".", "allclose", "(", "start", ",", "end", ")", ":", "...

38.36

0.002035

def parse_argument(string: str) -> Union[str, Tuple[str, str]]: """Return a single value for a string understood as a positional argument or a |tuple| containing a keyword and its value for a string understood as a keyword argument. |parse_argument| is intended to be used as a helper function for f...

[ "def", "parse_argument", "(", "string", ":", "str", ")", "->", "Union", "[", "str", ",", "Tuple", "[", "str", ",", "str", "]", "]", ":", "idx_equal", "=", "string", ".", "find", "(", "'='", ")", "if", "idx_equal", "==", "-", "1", ":", "return", "...

32.69697

0.0009

def fac2real(pp_file=None,factors_file="factors.dat",out_file="test.ref", upper_lim=1.0e+30,lower_lim=-1.0e+30,fill_value=1.0e+30): """A python replication of the PEST fac2real utility for creating a structure grid array from previously calculated kriging factors (weights) Parameters -----...

[ "def", "fac2real", "(", "pp_file", "=", "None", ",", "factors_file", "=", "\"factors.dat\"", ",", "out_file", "=", "\"test.ref\"", ",", "upper_lim", "=", "1.0e+30", ",", "lower_lim", "=", "-", "1.0e+30", ",", "fill_value", "=", "1.0e+30", ")", ":", "if", "...

37.863636

0.009827

def compute_internal(self, sym_name, bucket_kwargs=None, **arg_dict): """ View the internal symbols using the forward function. :param sym_name: :param bucket_kwargs: :param input_dict: :return: """ data_shapes = {k: v.shape for k, v in arg_dict.items()} ...

[ "def", "compute_internal", "(", "self", ",", "sym_name", ",", "bucket_kwargs", "=", "None", ",", "*", "*", "arg_dict", ")", ":", "data_shapes", "=", "{", "k", ":", "v", ".", "shape", "for", "k", ",", "v", "in", "arg_dict", ".", "items", "(", ")", "...

43.515152

0.001362

def get_source_attributes(source): """ Retreives a dictionary of source attributes from the source class :param source: Seismic source as instance of :class: `openquake.hazardlib.source.base.BaseSeismicSource` :returns: Dictionary of source attributes """ attrs = {"id": ...

[ "def", "get_source_attributes", "(", "source", ")", ":", "attrs", "=", "{", "\"id\"", ":", "source", ".", "source_id", ",", "\"name\"", ":", "source", ".", "name", ",", "\"tectonicRegion\"", ":", "source", ".", "tectonic_region_type", "}", "if", "isinstance", ...

34

0.001362

def get_prefix_dir(archive): """ Often, all files are in a single directory. If so, they'll all have the same prefix. Determine any such prefix. archive is a ZipFile """ names = archive.namelist() shortest_name = sorted(names, key=len)[0] candidate_prefixes = [ shortest_name[:len...

[ "def", "get_prefix_dir", "(", "archive", ")", ":", "names", "=", "archive", ".", "namelist", "(", ")", "shortest_name", "=", "sorted", "(", "names", ",", "key", "=", "len", ")", "[", "0", "]", "candidate_prefixes", "=", "[", "shortest_name", "[", ":", ...

31.75

0.001912

def replace_cluster_custom_object_status(self, group, version, plural, name, body, **kwargs): # noqa: E501 """replace_cluster_custom_object_status # noqa: E501 replace status of the cluster scoped specified custom object # noqa: E501 This method makes a synchronous HTTP request by default. T...

[ "def", "replace_cluster_custom_object_status", "(", "self", ",", "group", ",", "version", ",", "plural", ",", "name", ",", "body", ",", "*", "*", "kwargs", ")", ":", "# noqa: E501", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ...

57.76

0.001362

def main(): """Provide the entry point in the the modutils command.""" mod_choices = ('banned', 'contributor', 'moderator') mod_choices_dsp = ', '.join(['`{}`'.format(x) for x in mod_choices]) msg = { 'add': ('Add users to one of the following categories: {}' .format(mod_choices_...

[ "def", "main", "(", ")", ":", "mod_choices", "=", "(", "'banned'", ",", "'contributor'", ",", "'moderator'", ")", "mod_choices_dsp", "=", "', '", ".", "join", "(", "[", "'`{}`'", ".", "format", "(", "x", ")", "for", "x", "in", "mod_choices", "]", ")", ...

51.141304

0.000209

def setVisible(self, state): """ Sets whether or not this particular layer is visible. Depending on \ if the inheritVisibility property is set for this layer, it may not \ actually affect the visible state based on its inheritance. If you \ want to force this layer to be visibl...

[ "def", "setVisible", "(", "self", ",", "state", ")", ":", "# store the current state", "currvis", "=", "self", ".", "isVisible", "(", ")", "# update the local property", "self", ".", "_visible", "=", "state", "# check the new state", "newvis", "=", "self", ".", ...

31.222222

0.009206

def arr_base10toN(anum10, aradix, *args): """ ARGS anum10 in number in base 10 aradix in convert <anum10> to number in base + <aradix> OPTIONAL forcelength in if nonzero, indicates the length ...

[ "def", "arr_base10toN", "(", "anum10", ",", "aradix", ",", "*", "args", ")", ":", "new_num_arr", "=", "array", "(", "(", ")", ")", "current", "=", "anum10", "while", "current", "!=", "0", ":", "remainder", "=", "current", "%", "aradix", "new_num_arr", ...

31.6

0.002047

def defrag(plist): """defrag(plist) -> ([not fragmented], [defragmented], [ [bad fragments], [bad fragments], ... ])""" frags = defaultdict(PacketList) nofrag = PacketList() for p in plist: ip = p[IP] if IP not in p: nofrag.append(p) continue ...

[ "def", "defrag", "(", "plist", ")", ":", "frags", "=", "defaultdict", "(", "PacketList", ")", "nofrag", "=", "PacketList", "(", ")", "for", "p", "in", "plist", ":", "ip", "=", "p", "[", "IP", "]", "if", "IP", "not", "in", "p", ":", "nofrag", ".",...

34.232143

0.001521

def new_text_block(self, **kwargs): """Create a new text block.""" proto = {'content': '', 'type': self.markdown} proto.update(**kwargs) return proto

[ "def", "new_text_block", "(", "self", ",", "*", "*", "kwargs", ")", ":", "proto", "=", "{", "'content'", ":", "''", ",", "'type'", ":", "self", ".", "markdown", "}", "proto", ".", "update", "(", "*", "*", "kwargs", ")", "return", "proto" ]

35.4

0.01105

def show(self, commit): """Display one commit line. The output will be: <uuid> <#lines> <author> <short-commit-date> If verbose flag set, the output will be: <uuid> <#lines> <author+email> <long-date> <committer+email> """ author = commit.author ...

[ "def", "show", "(", "self", ",", "commit", ")", ":", "author", "=", "commit", ".", "author", "author_width", "=", "25", "committer", "=", "''", "commit_date", "=", "date_to_str", "(", "commit", ".", "committer_time", ",", "commit", ".", "committer_tz", ","...

38.285714

0.002427

def _to_pil_rgb_image(image): """Returns an PIL Image converted to the RGB color space. If the image has an alpha channel (transparency), it will be overlaid on a black background. :param image: the PIL image to convert :returns: The input image if it was already in RGB mode, or a new RGB image ...

[ "def", "_to_pil_rgb_image", "(", "image", ")", ":", "if", "image", ".", "mode", "==", "\"RGB\"", ":", "return", "image", "from", "PIL", "import", "Image", "image", ".", "load", "(", ")", "rgb_image", "=", "Image", ".", "new", "(", "\"RGB\"", ",", "imag...

27.307692

0.001361

def PostUnregistration(method): # pylint: disable=C0103 """ The service post-unregistration callback decorator is called after a service of the component has been unregistered from the framework. The decorated method must accept the :class:`~pelix.framework.ServiceReference` of the registered ...

[ "def", "PostUnregistration", "(", "method", ")", ":", "# pylint: disable=C0103", "if", "not", "isinstance", "(", "method", ",", "types", ".", "FunctionType", ")", ":", "raise", "TypeError", "(", "\"@PostUnregistration can only be applied on functions\"", ")", "# Tests t...

32.903226

0.001905

def create_html(self, fname, title="ClassTracker Statistics"): """ Create HTML page `fname` and additional files in a directory derived from `fname`. """ # Create a folder to store the charts and additional HTML files. self.basedir = os.path.dirname(os.path.abspath(fname)...

[ "def", "create_html", "(", "self", ",", "fname", ",", "title", "=", "\"ClassTracker Statistics\"", ")", ":", "# Create a folder to store the charts and additional HTML files.", "self", ".", "basedir", "=", "os", ".", "path", ".", "dirname", "(", "os", ".", "path", ...

43.552632

0.001773

def reset(self): """Reset the state of this updater for a new optimisation problem.""" self.__init__(self.alpha, self.beta1, self.beta2, self.epsilon)

[ "def", "reset", "(", "self", ")", ":", "self", ".", "__init__", "(", "self", ".", "alpha", ",", "self", ".", "beta1", ",", "self", ".", "beta2", ",", "self", ".", "epsilon", ")" ]

54.666667

0.012048

def update_mutation_inputs(service): """ Args: service : The service being updated by the mutation Returns: (list) : a list of all of the fields availible for the service. Pk is a required field in order to filter the results """ # grab the default lis...

[ "def", "update_mutation_inputs", "(", "service", ")", ":", "# grab the default list of field summaries", "inputs", "=", "_service_mutation_summaries", "(", "service", ")", "# visit each field", "for", "field", "in", "inputs", ":", "# if we're looking at the id field", "if", ...

30.041667

0.001344

def _generate_overview_note(pass_count, only_warning_count, error_count, total_count): """ Generates and returns the HTML note that provides a summary of validation status. """ note_html = ['<div class="progress">'] pbars = [ [ float(error_count), 'danger', 'had errors' ], [ float(only_warn...

[ "def", "_generate_overview_note", "(", "pass_count", ",", "only_warning_count", ",", "error_count", ",", "total_count", ")", ":", "note_html", "=", "[", "'<div class=\"progress\">'", "]", "pbars", "=", "[", "[", "float", "(", "error_count", ")", ",", "'danger'", ...

40.291667

0.021212

def visit_loop(self, node, cond=None): """ Handle incremented variables in loop body. >>> import gast as ast >>> from pythran import passmanager, backend >>> node = ast.parse(''' ... def foo(): ... a = b = c = 2 ... while a > 0: ... a -= 1...

[ "def", "visit_loop", "(", "self", ",", "node", ",", "cond", "=", "None", ")", ":", "# visit once to gather newly declared vars", "for", "stmt", "in", "node", ".", "body", ":", "self", ".", "visit", "(", "stmt", ")", "# freeze current state", "old_range", "=", ...

28.238095

0.00163

def iter_fields(fields): """ .. deprecated:: 1.6 Iterate over fields. The addition of :class:`~urllib3.fields.RequestField` makes this function obsolete. Instead, use :func:`iter_field_objects`, which returns :class:`~urllib3.fields.RequestField` objects. Supports list of (k, v) tuples an...

[ "def", "iter_fields", "(", "fields", ")", ":", "if", "isinstance", "(", "fields", ",", "dict", ")", ":", "return", "(", "(", "k", ",", "v", ")", "for", "k", ",", "v", "in", "six", ".", "iteritems", "(", "fields", ")", ")", "return", "(", "(", "...

28.25

0.002141

def _no_spelling_errors(relative_path, contents, linter_options): """No spelling errors in strings, comments or anything of the like.""" block_regexps = linter_options.get("block_regexps", None) chunks, shadow = spellcheckable_and_shadow_contents(contents, ...

[ "def", "_no_spelling_errors", "(", "relative_path", ",", "contents", ",", "linter_options", ")", ":", "block_regexps", "=", "linter_options", ".", "get", "(", "\"block_regexps\"", ",", "None", ")", "chunks", ",", "shadow", "=", "spellcheckable_and_shadow_contents", ...

59.75

0.000824

def load_theme_from_dict(dict_theme): """ Load a theme from a dict. Expected format: { "Question": { "mark_color": "yellow", "brackets_color": "normal", ... }, "List": { "selection_color": "bold_blue", "selection_cursor"...

[ "def", "load_theme_from_dict", "(", "dict_theme", ")", ":", "t", "=", "Default", "(", ")", "for", "question_type", ",", "settings", "in", "dict_theme", ".", "items", "(", ")", ":", "if", "question_type", "not", "in", "vars", "(", "t", ")", ":", "raise", ...

36.324324

0.000725

def flux(self, photon_energy, distance=1 * u.kpc, seed=None): """Differential flux at a given distance from the source from a single seed photon field Parameters ---------- photon_energy : :class:`~astropy.units.Quantity` float or array Photon energy array. ...

[ "def", "flux", "(", "self", ",", "photon_energy", ",", "distance", "=", "1", "*", "u", ".", "kpc", ",", "seed", "=", "None", ")", ":", "model", "=", "super", "(", "InverseCompton", ",", "self", ")", ".", "flux", "(", "photon_energy", ",", "distance",...

37.730769

0.000994

def po_to_unicode(po_obj): """ Turns a polib :class:`polib.PoFile` or a :class:`polib.PoEntry` into a :class:`unicode` string. :param po_obj: Either a :class:`polib.PoFile` or :class:`polib.PoEntry`. :rtype: :class:`unicode` string. """ po_text = po_obj.__str__() if type(po_text) !...

[ "def", "po_to_unicode", "(", "po_obj", ")", ":", "po_text", "=", "po_obj", ".", "__str__", "(", ")", "if", "type", "(", "po_text", ")", "!=", "types", ".", "UnicodeType", ":", "po_text", "=", "po_text", ".", "decode", "(", "'utf-8'", ")", "return", "po...

30.307692

0.012315

def CheckLanguage(filename, clean_lines, linenum, file_extension, include_state, nesting_state, error): """Checks rules from the 'C++ language rules' section of cppguide.html. Some of these rules are hard to test (function overloading, using uint32 inappropriately), but we do the best we can. ...

[ "def", "CheckLanguage", "(", "filename", ",", "clean_lines", ",", "linenum", ",", "file_extension", ",", "include_state", ",", "nesting_state", ",", "error", ")", ":", "# If the line is empty or consists of entirely a comment, no need to", "# check it.", "line", "=", "cle...

43.396226

0.012326

def local_1d_halo_exchange(k, v, num_w_blocks, w_dim, mask_right): """Halo exchange for keys and values for Local 1D attention.""" if num_w_blocks is not None: if mask_right: k = mtf.left_halo_exchange(k, num_w_blocks, w_dim, w_dim.size) v = mtf.left_halo_exchange(v, num_w_blocks, w_dim, w_dim.size)...

[ "def", "local_1d_halo_exchange", "(", "k", ",", "v", ",", "num_w_blocks", ",", "w_dim", ",", "mask_right", ")", ":", "if", "num_w_blocks", "is", "not", "None", ":", "if", "mask_right", ":", "k", "=", "mtf", ".", "left_halo_exchange", "(", "k", ",", "num_...

40.411765

0.018492

def extended(self): """Determine whether the OAuth token has been extended.""" if self.expires_at: return self.expires_at - self.issued_at > timedelta(days=30) else: return False

[ "def", "extended", "(", "self", ")", ":", "if", "self", ".", "expires_at", ":", "return", "self", ".", "expires_at", "-", "self", ".", "issued_at", ">", "timedelta", "(", "days", "=", "30", ")", "else", ":", "return", "False" ]

36.833333

0.00885

def viable_dim_config(bytes_available, arrays, template, dim_ord, nsolvers=1): """ Returns the number of timesteps possible, given the registered arrays and a memory budget defined by bytes_available Arguments ---------------- bytes_available : int The memory budget, or availabl...

[ "def", "viable_dim_config", "(", "bytes_available", ",", "arrays", ",", "template", ",", "dim_ord", ",", "nsolvers", "=", "1", ")", ":", "if", "not", "isinstance", "(", "dim_ord", ",", "list", ")", ":", "raise", "TypeError", "(", "'dim_ord should be a list'", ...

37.275

0.001307

def network_lopf_prepare_solver(network, solver_name="glpk", solver_io=None): """ Prepare solver for linear optimal power flow. Parameters ---------- solver_name : string Must be a solver name that pyomo recognises and that is installed, e.g. "glpk", "gurobi" solver_io : string,...

[ "def", "network_lopf_prepare_solver", "(", "network", ",", "solver_name", "=", "\"glpk\"", ",", "solver_io", "=", "None", ")", ":", "network", ".", "opt", "=", "SolverFactory", "(", "solver_name", ",", "solver_io", "=", "solver_io", ")", "patch_optsolver_record_me...

27.5

0.001351

def _get_engine_filesystem_config(file_types, args, conf_args): """Retriever authorization and engine filesystem configuration. """ file_types = [x.replace("_container", "") for x in list(file_types)] out = "" if "gcp" in file_types: out += _AUTH_CONFIG_GOOGLE if "s3" in file_types: ...

[ "def", "_get_engine_filesystem_config", "(", "file_types", ",", "args", ",", "conf_args", ")", ":", "file_types", "=", "[", "x", ".", "replace", "(", "\"_container\"", ",", "\"\"", ")", "for", "x", "in", "list", "(", "file_types", ")", "]", "out", "=", "...

36.153846

0.001036

def create(self, user, obj, **kwargs): """ Create a new follow link between a user and an object of a registered model type. """ follow = Follow(user=user) follow.target = obj follow.save() return follow

[ "def", "create", "(", "self", ",", "user", ",", "obj", ",", "*", "*", "kwargs", ")", ":", "follow", "=", "Follow", "(", "user", "=", "user", ")", "follow", ".", "target", "=", "obj", "follow", ".", "save", "(", ")", "return", "follow" ]

26.7

0.01087

def container_stop(name, timeout=30, force=True, remote_addr=None, cert=None, key=None, verify_cert=True): ''' Stop a container name : Name of the container to stop remote_addr : An URL to a remote Server, you also have to give cert and key if you provide rem...

[ "def", "container_stop", "(", "name", ",", "timeout", "=", "30", ",", "force", "=", "True", ",", "remote_addr", "=", "None", ",", "cert", "=", "None", ",", "key", "=", "None", ",", "verify_cert", "=", "True", ")", ":", "container", "=", "container_get"...

26.263158

0.000966

def text(self): """ Content of the response, in unicode. if Response.encoding is None and chardet module is available, encoding will be guessed. """ if hasattr(self, '_text') and self._text: return self._text if not self.content: return u'...

[ "def", "text", "(", "self", ")", ":", "if", "hasattr", "(", "self", ",", "'_text'", ")", "and", "self", ".", "_text", ":", "return", "self", ".", "_text", "if", "not", "self", ".", "content", ":", "return", "u''", "if", "isinstance", "(", "self", "...

30.793103

0.002172

def save(self, calc, session): ''' Saves tilde_obj into the database NB: this is the PUBLIC method @returns checksum, error ''' checksum = calc.get_checksum() try: existing_calc = session.query(model.Calculation).filter(model.Calculation.checksum == c...

[ "def", "save", "(", "self", ",", "calc", ",", "session", ")", ":", "checksum", "=", "calc", ".", "get_checksum", "(", ")", "try", ":", "existing_calc", "=", "session", ".", "query", "(", "model", ".", "Calculation", ")", ".", "filter", "(", "model", ...

54.381944

0.0153

def get_instance(self, payload): """ Build an instance of OriginationUrlInstance :param dict payload: Payload response from the API :returns: twilio.rest.trunking.v1.trunk.origination_url.OriginationUrlInstance :rtype: twilio.rest.trunking.v1.trunk.origination_url.OriginationUr...

[ "def", "get_instance", "(", "self", ",", "payload", ")", ":", "return", "OriginationUrlInstance", "(", "self", ".", "_version", ",", "payload", ",", "trunk_sid", "=", "self", ".", "_solution", "[", "'trunk_sid'", "]", ",", ")" ]

43.5

0.011261

def findAll(self, tag_name, params=None, fn=None, case_sensitive=False): """ Search for elements by their parameters using `Depth-first algorithm <http://en.wikipedia.org/wiki/Depth-first_search>`_. Args: tag_name (str): Name of the tag you are looking for. Set to "" if ...

[ "def", "findAll", "(", "self", ",", "tag_name", ",", "params", "=", "None", ",", "fn", "=", "None", ",", "case_sensitive", "=", "False", ")", ":", "output", "=", "[", "]", "if", "self", ".", "isAlmostEqual", "(", "tag_name", ",", "params", ",", "fn",...

37.290323

0.001686

def _write_median_norm(self, norms:[])->None: "Writes the median norm of the gradients to Tensorboard." median_norm = statistics.median(norms) self._add_gradient_scalar('median_norm', scalar_value=median_norm)

[ "def", "_write_median_norm", "(", "self", ",", "norms", ":", "[", "]", ")", "->", "None", ":", "median_norm", "=", "statistics", ".", "median", "(", "norms", ")", "self", ".", "_add_gradient_scalar", "(", "'median_norm'", ",", "scalar_value", "=", "median_no...

57.5

0.017167

def clean_core(self, config_file, region=None, profile_name=None): """ Clean all Core related provisioned artifacts from both the local file and the AWS Greengrass service. :param config_file: config file containing the core to clean :param region: the region in which the core s...

[ "def", "clean_core", "(", "self", ",", "config_file", ",", "region", "=", "None", ",", "profile_name", "=", "None", ")", ":", "config", "=", "GroupConfigFile", "(", "config_file", "=", "config_file", ")", "if", "region", "is", "None", ":", "region", "=", ...

40.344828

0.001669

def events(self): # type: () -> Generator[Event, None, None] """ Return a generator that provides any events that have been generated by protocol activity. :returns: generator of :class:`Event <wsproto.events.Event>` subclasses """ while self._events: ...

[ "def", "events", "(", "self", ")", ":", "# type: () -> Generator[Event, None, None]", "while", "self", ".", "_events", ":", "yield", "self", ".", "_events", ".", "popleft", "(", ")", "try", ":", "for", "frame", "in", "self", ".", "_proto", ".", "received_fra...

40.772727

0.001633

def live(self): """Get a live stream of timeseries readings. This returns an Iterable over a live stream of readings. Note that the result will need to be closed since the system can not tell when you'll be done with it. You can either call ``close`` on the endpoint when you're...

[ "def", "live", "(", "self", ")", ":", "session", "=", "self", ".", "_session", "url", "=", "\"{}/live\"", ".", "format", "(", "self", ".", "_base_url", ")", "supported_params", "=", "frozenset", "(", "[", "'filter[port]'", "]", ")", "params", "=", "{", ...

32.40625

0.001873

def _handle_end_way(self): """ Handle closing way element """ self._result.append(Way(result=self._result, **self._curr)) self._curr = {}

[ "def", "_handle_end_way", "(", "self", ")", ":", "self", ".", "_result", ".", "append", "(", "Way", "(", "result", "=", "self", ".", "_result", ",", "*", "*", "self", ".", "_curr", ")", ")", "self", ".", "_curr", "=", "{", "}" ]

28.666667

0.011299

def deriv(self, x: str, ctype: ContentType) -> SchemaPattern: """Return derivative of the receiver.""" return (self.pattern.deriv(x, ctype) if self.check_when() else NotAllowed())

[ "def", "deriv", "(", "self", ",", "x", ":", "str", ",", "ctype", ":", "ContentType", ")", "->", "SchemaPattern", ":", "return", "(", "self", ".", "pattern", ".", "deriv", "(", "x", ",", "ctype", ")", "if", "self", ".", "check_when", "(", ")", "else...

52

0.009479

def lists(self, value, key=None): """ Get a list with the values of a given key :rtype: list """ results = map(lambda x: x[value], self._items) return list(results)

[ "def", "lists", "(", "self", ",", "value", ",", "key", "=", "None", ")", ":", "results", "=", "map", "(", "lambda", "x", ":", "x", "[", "value", "]", ",", "self", ".", "_items", ")", "return", "list", "(", "results", ")" ]

22.888889

0.009346

def getargspec_permissive(func): """ An `inspect.getargspec` with a relaxed sanity check to support Cython. Motivation: A Cython-compiled function is *not* an instance of Python's types.FunctionType. That is the sanity check the standard Py2 library uses in `inspect.getargspec()`....

[ "def", "getargspec_permissive", "(", "func", ")", ":", "if", "inspect", ".", "ismethod", "(", "func", ")", ":", "func", "=", "func", ".", "im_func", "# Py2 Stdlib uses isfunction(func) which is too strict for Cython-compiled", "# functions though such have perfectly usable fu...

46.148148

0.000786

def get_sdk_vc_script(self,host_arch, target_arch): """ Return the script to initialize the VC compiler installed by SDK """ if (host_arch == 'amd64' and target_arch == 'x86'): # No cross tools needed compiling 32 bits on 64 bit machine host_arch=target_arch arc...

[ "def", "get_sdk_vc_script", "(", "self", ",", "host_arch", ",", "target_arch", ")", ":", "if", "(", "host_arch", "==", "'amd64'", "and", "target_arch", "==", "'x86'", ")", ":", "# No cross tools needed compiling 32 bits on 64 bit machine", "host_arch", "=", "target_ar...

44.333333

0.018405

def decode(self, envelope, session, private_key=None, oaep_hash_fn_name=None, mgf1_hash_fn_name=None, **kwargs): """ :meth:`.WMessengerOnionCoderLayerProto.decode` method implementation. :param envelope: original envelope :param session: original session :param private_key: private key to decrypt :param oaep...

[ "def", "decode", "(", "self", ",", "envelope", ",", "session", ",", "private_key", "=", "None", ",", "oaep_hash_fn_name", "=", "None", ",", "mgf1_hash_fn_name", "=", "None", ",", "*", "*", "kwargs", ")", ":", "message", "=", "private_key", ".", "decrypt", ...

41.25

0.025185

def _wait_for_pod_deletion(self, daemonset_pods=None): """ Wait until this K8sNode has evicted all its K8sPods. :param daemonset_pods: A list of K8sPods on this K8sNode that are managed by a K8sDaemonSet. :return: None """ pods = self._pod_inventory() ...

[ "def", "_wait_for_pod_deletion", "(", "self", ",", "daemonset_pods", "=", "None", ")", ":", "pods", "=", "self", ".", "_pod_inventory", "(", ")", "start_time", "=", "time", ".", "time", "(", ")", "while", "len", "(", "pods", ")", ">", "0", ":", "if", ...

31.111111

0.008666

def daily2D(inst, bin1, label1, bin2, label2, data_label, gate, returnBins=False): """2D Daily Occurrence Probability of data_label > gate over a season. If data_label is greater than gate at least once per day, then a 100% occurrence probability results.Season delineated by the bounds attached to...

[ "def", "daily2D", "(", "inst", ",", "bin1", ",", "label1", ",", "bin2", ",", "label2", ",", "data_label", ",", "gate", ",", "returnBins", "=", "False", ")", ":", "return", "_occurrence2D", "(", "inst", ",", "bin1", ",", "label1", ",", "bin2", ",", "l...

38.95

0.008766

def parse_toc(html_content): """ Parse TOC of HTML content if the SHOW_TOC config is true. :param html_content: raw HTML content :return: tuple(processed HTML, toc list, toc HTML unordered list) """ from flask import current_app from veripress.model.toc import HtmlTocParser if current_...

[ "def", "parse_toc", "(", "html_content", ")", ":", "from", "flask", "import", "current_app", "from", "veripress", ".", "model", ".", "toc", "import", "HtmlTocParser", "if", "current_app", ".", "config", "[", "'SHOW_TOC'", "]", ":", "toc_parser", "=", "HtmlTocP...

36.136364

0.001225

def transcript_associated_plot (self): """ Plot a bargraph showing the Transcript-associated reads """ # Plot bar graph of groups keys = OrderedDict() keys['Exonic Rate'] = { 'name': 'Exonic', 'color': '#2f7ed8' } keys['Intronic Rate'] = { 'name': 'Intronic', 'color': '#8bbc21'...

[ "def", "transcript_associated_plot", "(", "self", ")", ":", "# Plot bar graph of groups", "keys", "=", "OrderedDict", "(", ")", "keys", "[", "'Exonic Rate'", "]", "=", "{", "'name'", ":", "'Exonic'", ",", "'color'", ":", "'#2f7ed8'", "}", "keys", "[", "'Intron...

43.964286

0.015103

def set_password(name, password): ''' Set the password for a named user (insecure, the password will be in the process list while the command is running) :param str name: The name of the local user, which is assumed to be in the local directory service :param str password: The plaintext pa...

[ "def", "set_password", "(", "name", ",", "password", ")", ":", "cmd", "=", "\"dscl . -passwd /Users/{0} '{1}'\"", ".", "format", "(", "name", ",", "password", ")", "try", ":", "salt", ".", "utils", ".", "mac_utils", ".", "execute_return_success", "(", "cmd", ...

32.033333

0.00101

def get_domains(self): """ Retrieves the domains of the users from elastic. """ search = User.search() search.aggs.bucket('domains', 'terms', field='domain', order={'_count': 'desc'}, size=100) response = search.execute() return [entry.key for entry in respons...

[ "def", "get_domains", "(", "self", ")", ":", "search", "=", "User", ".", "search", "(", ")", "search", ".", "aggs", ".", "bucket", "(", "'domains'", ",", "'terms'", ",", "field", "=", "'domain'", ",", "order", "=", "{", "'_count'", ":", "'desc'", "}"...

43

0.008547