kejian/codesearchnet-python-rebalanced · Datasets at Hugging Face

text stringlengths 75 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 0.18
def try_ntime(max_try, func, args, kwargs): """ Try execute a function n times, until no exception raised or tried ``max_try`` times. 中文文档* 反复尝试执行一个函数若干次。直到成功为止或是重复尝试 ``max_try`` 次。期间只要有一次成功, 就正常返回。如果一次都没有成功, 则行为跟最后一次执行了 ``func(args, *kwargs)`` 一样。 """ if max_try < 1: ...	[ "def", "try_ntime", "(", "max_try", ",", "func", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "if", "max_try", "<", "1", ":", "raise", "ValueError", "for", "i", "in", "range", "(", "max_try", ")", ":", "try", ":", "return", "func", "(", "...	23.428571	0.001953
def _forward_iterator(self): "Returns a forward iterator over the trie" path = [(self, 0, Bits())] while path: node, idx, prefix = path.pop() if idx==0 and node.value is not None and not node.prune_value: yield (self._unpickle_key(prefix), self._unpickle_v...	[ "def", "_forward_iterator", "(", "self", ")", ":", "path", "=", "[", "(", "self", ",", "0", ",", "Bits", "(", ")", ")", "]", "while", "path", ":", "node", ",", "idx", ",", "prefix", "=", "path", ".", "pop", "(", ")", "if", "idx", "==", "0", "...	47	0.008696
def command(self): """ Returns a string representing the command you have to type to obtain the same packet """ f = [] for fn, fv in six.iteritems(self.fields): fld = self.get_field(fn) if isinstance(fv, (list, dict, set)) and len(fv) == 0: ...	[ "def", "command", "(", "self", ")", ":", "f", "=", "[", "]", "for", "fn", ",", "fv", "in", "six", ".", "iteritems", "(", "self", ".", "fields", ")", ":", "fld", "=", "self", ".", "get_field", "(", "fn", ")", "if", "isinstance", "(", "fv", ",", ...	35.333333	0.002296
def delete(stack, region, profile): """ Delete the given CloudFormation stack. """ ini_data = {} environment = {} environment['stack_name'] = stack if region: environment['region'] = region else: environment['region'] = find_myself() if profile: environment[...	[ "def", "delete", "(", "stack", ",", "region", ",", "profile", ")", ":", "ini_data", "=", "{", "}", "environment", "=", "{", "}", "environment", "[", "'stack_name'", "]", "=", "stack", "if", "region", ":", "environment", "[", "'region'", "]", "=", "regi...	20.136364	0.002155
def serialize( self, value, # type: Any state # type: _ProcessorState ): # type: (...) -> ET.Element """Serialize the value to a new element and returns the element.""" dict_value = self._converter.to_dict(value) return self._dictionary.serialize...	[ "def", "serialize", "(", "self", ",", "value", ",", "# type: Any", "state", "# type: _ProcessorState", ")", ":", "# type: (...) -> ET.Element", "dict_value", "=", "self", ".", "_converter", ".", "to_dict", "(", "value", ")", "return", "self", ".", "_dictionary", ...	36.777778	0.011799
def filter_by_transcript_expression( self, transcript_expression_dict, min_expression_value=0.0): """ Filters variants down to those which have overlap a transcript whose expression value in the transcript_expression_dict argument is greater than min_e...	[ "def", "filter_by_transcript_expression", "(", "self", ",", "transcript_expression_dict", ",", "min_expression_value", "=", "0.0", ")", ":", "return", "self", ".", "filter_any_above_threshold", "(", "multi_key_fn", "=", "lambda", "variant", ":", "variant", ".", "trans...	38.409091	0.002309
def solve(A, b, x0=None, tol=1e-5, maxiter=400, return_solver=False, existing_solver=None, verb=True, residuals=None): """Solve Ax=b. Solve the arbitrary system Ax=b with the best out-of-the box choice for a solver. The matrix A can be non-Hermitian, indefinite, Hermitian positive-definite, ...	[ "def", "solve", "(", "A", ",", "b", ",", "x0", "=", "None", ",", "tol", "=", "1e-5", ",", "maxiter", "=", "400", ",", "return_solver", "=", "False", ",", "existing_solver", "=", "None", ",", "verb", "=", "True", ",", "residuals", "=", "None", ")", ...	33.22314	0.000242
def image_to_url(image, colormap=None, origin='upper'): """ Infers the type of an image argument and transforms it into a URL. Parameters ---------- image: string, file or array-like object * If string, it will be written directly in the output file. * If file, it's content will be ...	[ "def", "image_to_url", "(", "image", ",", "colormap", "=", "None", ",", "origin", "=", "'upper'", ")", ":", "if", "isinstance", "(", "image", ",", "str", ")", "and", "not", "_is_url", "(", "image", ")", ":", "fileformat", "=", "os", ".", "path", ".",...	44.138889	0.000616
def set_auth_key_from_file(user, source, config='.ssh/authorized_keys', saltenv='base', fingerprint_hash_type=None): ''' Add a key to the authorized_keys file, using a file as the source. CLI Example...	[ "def", "set_auth_key_from_file", "(", "user", ",", "source", ",", "config", "=", "'.ssh/authorized_keys'", ",", "saltenv", "=", "'base'", ",", "fingerprint_hash_type", "=", "None", ")", ":", "# TODO: add support for pulling keys from other file sources as well", "lfile", ...	32.946429	0.001053
def dir_ensure(location, recursive=False, mode=None, owner=None, group=None, use_sudo=False): """ cuisine dir_ensure doesn't do sudo, so we implement our own Ensures that there is a remote directory at the given location, optionally updating its mode/owner/group. If we are not updating th...	[ "def", "dir_ensure", "(", "location", ",", "recursive", "=", "False", ",", "mode", "=", "None", ",", "owner", "=", "None", ",", "group", "=", "None", ",", "use_sudo", "=", "False", ")", ":", "args", "=", "''", "if", "recursive", ":", "args", "=", "...	34.666667	0.00085
def extract_response(raw_response): """Extract requests response object. only extract those status_code in [200, 300). :param raw_response: a requests.Resposne object. :return: content of response. """ data = urlread(raw_response) if is_success_response(raw_response): return data ...	[ "def", "extract_response", "(", "raw_response", ")", ":", "data", "=", "urlread", "(", "raw_response", ")", "if", "is_success_response", "(", "raw_response", ")", ":", "return", "data", "elif", "is_failure_response", "(", "raw_response", ")", ":", "raise", "Remo...	28.833333	0.001866
def profiling_query_formatter(view, context, query_document, name): """Format a ProfilingQuery entry for a ProfilingRequest detail field Parameters ---------- query_document : model.ProfilingQuery """ return Markup( ''.join( [ '<div class="pymongo-query row">...	[ "def", "profiling_query_formatter", "(", "view", ",", "context", ",", "query_document", ",", "name", ")", ":", "return", "Markup", "(", "''", ".", "join", "(", "[", "'<div class=\"pymongo-query row\">'", ",", "'<div class=\"col-md-1\">'", ",", "'<a href=\"{}\">'", "...	35.941176	0.00239
def build_tr(tr, meta_data, row_spans): """ This will return a single tr element, with all tds already populated. """ # Create a blank tr element. tr_el = etree.Element('tr') w_namespace = get_namespace(tr, 'w') visited_nodes = [] for el in tr: if el in visited_nodes: ...	[ "def", "build_tr", "(", "tr", ",", "meta_data", ",", "row_spans", ")", ":", "# Create a blank tr element.", "tr_el", "=", "etree", ".", "Element", "(", "'tr'", ")", "w_namespace", "=", "get_namespace", "(", "tr", ",", "'w'", ")", "visited_nodes", "=", "[", ...	38.04878	0.000312
def _make_hostport(conn, default_host, default_port, default_user='', default_password=None): """Convert a '[user[:pass]@]host:port' string to a Connection tuple. If the given connection is empty, use defaults. If no port is given, use the default. Args: conn (str): the string describing the t...	[ "def", "_make_hostport", "(", "conn", ",", "default_host", ",", "default_port", ",", "default_user", "=", "''", ",", "default_password", "=", "None", ")", ":", "parsed", "=", "urllib", ".", "parse", ".", "urlparse", "(", "'//%s'", "%", "conn", ")", "return...	39.190476	0.002372
def get(cls, parent, name): """Get an instance matching the parent and name""" return cls.query.filter_by(parent=parent, name=name).one_or_none()	[ "def", "get", "(", "cls", ",", "parent", ",", "name", ")", ":", "return", "cls", ".", "query", ".", "filter_by", "(", "parent", "=", "parent", ",", "name", "=", "name", ")", ".", "one_or_none", "(", ")" ]	53	0.012422
def filter(self, term_doc_matrix): ''' Parameters ---------- term_doc_matrix : TermDocMatrix Returns ------- TermDocMatrix pmi-filterd term doc matrix ''' df = term_doc_matrix.get_term_freq_df() if len(df) == 0: return term_doc_matrix low_pmi_bigrams = get_low_pmi_bigrams(self._threshold_coef...	[ "def", "filter", "(", "self", ",", "term_doc_matrix", ")", ":", "df", "=", "term_doc_matrix", ".", "get_term_freq_df", "(", ")", "if", "len", "(", "df", ")", "==", "0", ":", "return", "term_doc_matrix", "low_pmi_bigrams", "=", "get_low_pmi_bigrams", "(", "se...	29.619048	0.034268
def is_bit_mask(enumeration, potential_mask): """ A utility function that checks if the provided value is a composite bit mask of enumeration values in the specified enumeration class. Args: enumeration (class): One of the mask enumeration classes found in this file. These include: ...	[ "def", "is_bit_mask", "(", "enumeration", ",", "potential_mask", ")", ":", "if", "not", "isinstance", "(", "potential_mask", ",", "six", ".", "integer_types", ")", ":", "return", "False", "mask_enumerations", "=", "(", "CryptographicUsageMask", ",", "ProtectionSto...	29.842105	0.000854
def find_rdataset(self, name, rdtype, covers=dns.rdatatype.NONE, create=False): """Look for rdata with the specified name and type in the zone, and return an rdataset encapsulating it. The I{name}, I{rdtype}, and I{covers} parameters may be strings, in which case t...	[ "def", "find_rdataset", "(", "self", ",", "name", ",", "rdtype", ",", "covers", "=", "dns", ".", "rdatatype", ".", "NONE", ",", "create", "=", "False", ")", ":", "name", "=", "self", ".", "_validate_name", "(", "name", ")", "if", "isinstance", "(", "...	40.857143	0.002049
def get_surveys(self): """Gets all surveys in account Args: None Returns: list: a list of all surveys """ payload = { 'Request': 'getSurveys', 'Format': 'JSON' } r = self._session.get(QUALT...	[ "def", "get_surveys", "(", "self", ")", ":", "payload", "=", "{", "'Request'", ":", "'getSurveys'", ",", "'Format'", ":", "'JSON'", "}", "r", "=", "self", ".", "_session", ".", "get", "(", "QUALTRICS_URL", ",", "params", "=", "payload", ")", "output", ...	24.9375	0.012077
def user(val, **kwargs): # pylint: disable=unused-argument ''' This can be either a string or a numeric uid ''' if not isinstance(val, six.integer_types): # Try to convert to integer. This will fail if the value is a # username. This is OK, as we check below to make sure that the ...	[ "def", "user", "(", "val", ",", "", "", "kwargs", ")", ":", "# pylint: disable=unused-argument", "if", "not", "isinstance", "(", "val", ",", "six", ".", "integer_types", ")", ":", "# Try to convert to integer. This will fail if the value is a", "# username. This is OK...	45.842105	0.001125
def _get_info_score(info): """ Helper function for _bestmove_get_info. Example inputs: score cp -100 <- engine is behind 100 centipawns score mate 3 <- engine has big lead or checkmated opponent """ search = re.search(pattern="score (?P<eval>\w+) ...	[ "def", "_get_info_score", "(", "info", ")", ":", "search", "=", "re", ".", "search", "(", "pattern", "=", "\"score (?P<eval>\\w+) (?P<value>-?\\d+)\"", ",", "string", "=", "info", ")", "return", "{", "\"score\"", ":", "{", "\"eval\"", ":", "search", ".", "gr...	39.545455	0.013483
def stage_all(self): """ Stages all changed and untracked files """ LOGGER.info('Staging all files') self.repo.git.add(A=True)	[ "def", "stage_all", "(", "self", ")", ":", "LOGGER", ".", "info", "(", "'Staging all files'", ")", "self", ".", "repo", ".", "git", ".", "add", "(", "A", "=", "True", ")" ]	26.833333	0.012048
def re_general(Vel, Area, PerimWetted, Nu): """Return the Reynolds Number for a general cross section.""" #Checking input validity - inputs not checked here are checked by #functions this function calls. ut.check_range([Vel, ">=0", "Velocity"], [Nu, ">0", "Nu"]) return 4 * radius_hydraulic_general(A...	[ "def", "re_general", "(", "Vel", ",", "Area", ",", "PerimWetted", ",", "Nu", ")", ":", "#Checking input validity - inputs not checked here are checked by", "#functions this function calls.", "ut", ".", "check_range", "(", "[", "Vel", ",", "\">=0\"", ",", "\"Velocity\"",...	58.833333	0.00838
def rgb_to_hsv(r, g=None, b=None): """Convert the color from RGB coordinates to HSV. Parameters: :r: The Red component value [0...1] :g: The Green component value [0...1] :b: The Blue component value [0...1] Returns: The color as an (h, s, v) tuple in the range: h[0...360],...	[ "def", "rgb_to_hsv", "(", "r", ",", "g", "=", "None", ",", "b", "=", "None", ")", ":", "if", "type", "(", "r", ")", "in", "[", "list", ",", "tuple", "]", ":", "r", ",", "g", ",", "b", "=", "r", "v", "=", "float", "(", "max", "(", "r", "...	19.975	0.022673
def unit(n, d=None, j=None, tt_instance=True): ''' Generates e_j _vector in tt.vector format --------- Parameters: n - modes (either integer or array) d - dimensionality (integer) j - position of 1 in full-format e_j (integer) tt_instance - if True, returns tt.vector; ...	[ "def", "unit", "(", "n", ",", "d", "=", "None", ",", "j", "=", "None", ",", "tt_instance", "=", "True", ")", ":", "if", "isinstance", "(", "n", ",", "int", ")", ":", "if", "d", "is", "None", ":", "d", "=", "1", "n", "=", "n", "*", "_np", ...	26.285714	0.001311
def run(command, parser, cl_args, unknown_args): """ run command """ try: clusters = tracker_access.get_clusters() except: Log.error("Fail to connect to tracker: \'%s\'", cl_args["tracker_url"]) return False print('Available clusters:') for cluster in clusters: print(' %s' % cluster) return...	[ "def", "run", "(", "command", ",", "parser", ",", "cl_args", ",", "unknown_args", ")", ":", "try", ":", "clusters", "=", "tracker_access", ".", "get_clusters", "(", ")", "except", ":", "Log", ".", "error", "(", "\"Fail to connect to tracker: \\'%s\\'\"", ",", ...	28.636364	0.024615
def do_thing(): """Execute command line cryptorito actions""" if len(sys.argv) == 5 and sys.argv[1] == "encrypt_file": encrypt_file(sys.argv[2], sys.argv[3], sys.argv[4]) elif len(sys.argv) == 4 and sys.argv[1] == "decrypt_file": decrypt_file(sys.argv[2], sys.argv[3]) elif len(sys.argv) ...	[ "def", "do_thing", "(", ")", ":", "if", "len", "(", "sys", ".", "argv", ")", "==", "5", "and", "sys", ".", "argv", "[", "1", "]", "==", "\"encrypt_file\"", ":", "encrypt_file", "(", "sys", ".", "argv", "[", "2", "]", ",", "sys", ".", "argv", "[...	43.681818	0.001018
def next(self): """Next point in iteration """ x, y = next(self.scan) xs = int(round(x)) ys = int(round(y)) return xs, ys	[ "def", "next", "(", "self", ")", ":", "x", ",", "y", "=", "next", "(", "self", ".", "scan", ")", "xs", "=", "int", "(", "round", "(", "x", ")", ")", "ys", "=", "int", "(", "round", "(", "y", ")", ")", "return", "xs", ",", "ys" ]	23.285714	0.011834
def from_object(updates): "Update same name (or prefixed) settings." import sys config = sys.modules[__name__] prefix = config.__name__.split('.')[0].upper() keys = [k for k in config.__dict__ if \ k != from_object.__name__ and not k.startswith('_')] get_value = lambda c, k: hasattr...	[ "def", "from_object", "(", "updates", ")", ":", "import", "sys", "config", "=", "sys", ".", "modules", "[", "__name__", "]", "prefix", "=", "config", ".", "__name__", ".", "split", "(", "'.'", ")", "[", "0", "]", ".", "upper", "(", ")", "keys", "="...	40.461538	0.011152
def _create_lookup(self, branched_action_space): """ Creates a Dict that maps discrete actions (scalars) to branched actions (lists). Each key in the Dict maps to one unique set of branched actions, and each value contains the List of branched actions. """ possible_vals =...	[ "def", "_create_lookup", "(", "self", ",", "branched_action_space", ")", ":", "possible_vals", "=", "[", "range", "(", "_num", ")", "for", "_num", "in", "branched_action_space", "]", "all_actions", "=", "[", "list", "(", "_action", ")", "for", "_action", "in...	57.454545	0.009346
def configure_splitevaluator(self): """ Configures and returns the SplitEvaluator and Classifier instance as tuple. :return: evaluator and classifier :rtype: tuple """ if self.classification: speval = javabridge.make_instance("weka/experiment/ClassifierSplitE...	[ "def", "configure_splitevaluator", "(", "self", ")", ":", "if", "self", ".", "classification", ":", "speval", "=", "javabridge", ".", "make_instance", "(", "\"weka/experiment/ClassifierSplitEvaluator\"", ",", "\"()V\"", ")", "else", ":", "speval", "=", "javabridge",...	43.615385	0.010363
def prune_graph(graph_str, package_name): """Prune a package graph so it only contains nodes accessible from the given package. Args: graph_str (str): Dot-language graph string. package_name (str): Name of package of interest. Returns: Pruned graph, as a string. """ # f...	[ "def", "prune_graph", "(", "graph_str", ",", "package_name", ")", ":", "# find nodes of interest", "g", "=", "read_dot", "(", "graph_str", ")", "nodes", "=", "set", "(", ")", "for", "node", ",", "attrs", "in", "g", ".", "node_attr", ".", "iteritems", "(", ...	28.195652	0.000745
def setOutputObject(self, newOutput=output.CalcpkgOutput(True, True)): """Set an object where all output from calcpkg will be redirected to for this repository""" self.output = newOutput	[ "def", "setOutputObject", "(", "self", ",", "newOutput", "=", "output", ".", "CalcpkgOutput", "(", "True", ",", "True", ")", ")", ":", "self", ".", "output", "=", "newOutput" ]	62.666667	0.026316
def acquire(self, blocking=True, timeout=None): """Acquire the lock. If blocking is true (the default), then this will block until the lock can be acquired. The timeout parameter specifies an optional timeout in seconds. The return value is a boolean indicating whether the ...	[ "def", "acquire", "(", "self", ",", "blocking", "=", "True", ",", "timeout", "=", "None", ")", ":", "hub", "=", "get_hub", "(", ")", "try", ":", "# switcher.__call__ needs to be synchronized with a lock IF it can", "# be called from different threads. This is the case her...	48.326923	0.00078
def fadeGrid(self, fSeconds, bFadeIn): """Fading the Grid in or out in fSeconds""" fn = self.function_table.fadeGrid fn(fSeconds, bFadeIn)	[ "def", "fadeGrid", "(", "self", ",", "fSeconds", ",", "bFadeIn", ")", ":", "fn", "=", "self", ".", "function_table", ".", "fadeGrid", "fn", "(", "fSeconds", ",", "bFadeIn", ")" ]	31.8	0.01227
def initialize(self, configfile=None): """Initialize and load the Fortran library (and model, if applicable). The Fortran library is loaded and ctypes is used to annotate functions inside the library. The Fortran library's initialization is called. Normally a path to an ``*.ini`` model...	[ "def", "initialize", "(", "self", ",", "configfile", "=", "None", ")", ":", "if", "configfile", "is", "not", "None", ":", "self", ".", "configfile", "=", "configfile", "try", ":", "self", ".", "configfile", "except", "AttributeError", ":", "raise", "ValueE...	43.628571	0.001922
def calczmax(self): """ NAME: calczmax PURPOSE: calculate the maximum height INPUT: OUTPUT: zmax HISTORY: 2012-06-01 - Written - Bovy (IAS) """ if hasattr(self,'_zmax'): #pragma: no cover return self....	[ "def", "calczmax", "(", "self", ")", ":", "if", "hasattr", "(", "self", ",", "'_zmax'", ")", ":", "#pragma: no cover", "return", "self", ".", "_zmax", "Ez", "=", "calcEz", "(", "self", ".", "_z", ",", "self", ".", "_vz", ",", "self", ".", "_verticalp...	30.428571	0.026166
def iterparse(filelike, encoding=None, handler_class=DrillHandler, xpath=None): """ :param filelike: A file-like object with a ``read`` method :returns: An iterator yielding :class:`XmlElement` objects """ parser = expat.ParserCreate(encoding) elem_iter = DrillElementIterator(filelike, parser) ...	[ "def", "iterparse", "(", "filelike", ",", "encoding", "=", "None", ",", "handler_class", "=", "DrillHandler", ",", "xpath", "=", "None", ")", ":", "parser", "=", "expat", ".", "ParserCreate", "(", "encoding", ")", "elem_iter", "=", "DrillElementIterator", "(...	43	0.001751
def create (netParams=None, simConfig=None, output=False): ''' Sequence of commands to create network ''' from .. import sim import __main__ as top if not netParams: netParams = top.netParams if not simConfig: simConfig = top.simConfig sim.initialize(netParams, simConfig) # create network obje...	[ "def", "create", "(", "netParams", "=", "None", ",", "simConfig", "=", "None", ",", "output", "=", "False", ")", ":", "from", ".", ".", "import", "sim", "import", "__main__", "as", "top", "if", "not", "netParams", ":", "netParams", "=", "top", ".", "...	61.25	0.011055
def cmd_genobstacles(self, args): '''genobstacles command parser''' usage = "usage: genobstacles <start\|stop\|restart\|clearall\|status\|set>" if len(args) == 0: print(usage) return if args[0] == "set": gen_settings.command(args[1:]) elif args[0] =...	[ "def", "cmd_genobstacles", "(", "self", ",", "args", ")", ":", "usage", "=", "\"usage: genobstacles <start\|stop\|restart\|clearall\|status\|set>\"", "if", "len", "(", "args", ")", "==", "0", ":", "print", "(", "usage", ")", "return", "if", "args", "[", "0", "]", ...	36.058824	0.001588
def execute_task(task_id, verbosity=None, runmode='run', sigmode=None, monitor_interval=5, resource_monitor_interval=60): '''Execute single or master task, return a dictionary''' tf = TaskFile(task_id) # this will automati...	[ "def", "execute_task", "(", "task_id", ",", "verbosity", "=", "None", ",", "runmode", "=", "'run'", ",", "sigmode", "=", "None", ",", "monitor_interval", "=", "5", ",", "resource_monitor_interval", "=", "60", ")", ":", "tf", "=", "TaskFile", "(", "task_id"...	35.54	0.001095
def crossmap(fas, reads, options, no_shrink, keepDB, threads, cluster, nodes): """ map all read sets against all fasta files """ if cluster is True: threads = '48' btc = [] for fa in fas: btd = bowtiedb(fa, keepDB) F, R, U = reads if F is not False: if...	[ "def", "crossmap", "(", "fas", ",", "reads", ",", "options", ",", "no_shrink", ",", "keepDB", ",", "threads", ",", "cluster", ",", "nodes", ")", ":", "if", "cluster", "is", "True", ":", "threads", "=", "'48'", "btc", "=", "[", "]", "for", "fa", "in...	37.952381	0.011621
def createCombinedSequenceColumn(network, networkConfig, suffix=""): """ Create a a single column containing one L4, one L2, and one TM. networkConfig is a dict that must contain the following keys (additional keys ok): { "externalInputSize": 1024, "sensorInputSize": 1024, "L2Params": { ...	[ "def", "createCombinedSequenceColumn", "(", "network", ",", "networkConfig", ",", "suffix", "=", "\"\"", ")", ":", "externalInputName", "=", "\"externalInput\"", "+", "suffix", "sensorInputName", "=", "\"sensorInput\"", "+", "suffix", "L4ColumnName", "=", "\"L4Column\...	38.252747	0.012321
def vm_netstats(vm_=None): ''' Return combined network counters used by the vms on this hyper in a list of dicts: .. code-block:: python [ 'your-vm': { 'io_read_kbs' : 0, 'io_total_read_kbs' : 0, 'io_total_write_kbs' ...	[ "def", "vm_netstats", "(", "vm_", "=", "None", ")", ":", "with", "_get_xapi_session", "(", ")", "as", "xapi", ":", "def", "_info", "(", "vm_", ")", ":", "ret", "=", "{", "}", "vm_rec", "=", "_get_record_by_label", "(", "xapi", ",", "'VM'", ",", "vm_"...	27.574468	0.000745
def postOptions(self): """ Display details about the ports which already exist. """ store = self.parent.parent.getStore() port = None factories = {} for portType in [TCPPort, SSLPort, StringEndpointPort]: for port in store.query(portType): ...	[ "def", "postOptions", "(", "self", ")", ":", "store", "=", "self", ".", "parent", ".", "parent", ".", "getStore", "(", ")", "port", "=", "None", "factories", "=", "{", "}", "for", "portType", "in", "[", "TCPPort", ",", "SSLPort", ",", "StringEndpointPo...	46.38	0.001267
async def quit(self, message=None): """ Quit network. """ if message is None: message = self.DEFAULT_QUIT_MESSAGE await self.rawmsg('QUIT', message) await self.disconnect(expected=True)	[ "async", "def", "quit", "(", "self", ",", "message", "=", "None", ")", ":", "if", "message", "is", "None", ":", "message", "=", "self", ".", "DEFAULT_QUIT_MESSAGE", "await", "self", ".", "rawmsg", "(", "'QUIT'", ",", "message", ")", "await", "self", "....	32	0.008696
def add_alias(self, entry): """ Adds id to the current list 'aliased_by' """ assert isinstance(entry, SymbolVAR) self.aliased_by.append(entry)	[ "def", "add_alias", "(", "self", ",", "entry", ")", ":", "assert", "isinstance", "(", "entry", ",", "SymbolVAR", ")", "self", ".", "aliased_by", ".", "append", "(", "entry", ")" ]	34	0.011494
def get_policy_info(policy_name, policy_class, adml_language='en-US'): r''' Returns information about a specified policy Args: policy_name (str): The name of the policy to lookup policy_class (str): The class of policy, i.e. ma...	[ "def", "get_policy_info", "(", "policy_name", ",", "policy_class", ",", "adml_language", "=", "'en-US'", ")", ":", "# return the possible policy names and element names", "ret", "=", "{", "'policy_name'", ":", "policy_name", ",", "'policy_class'", ":", "policy_class", "...	44.13198	0.00225
def box(n_traces=5,n=100,mode=None): """ Returns a DataFrame with the required format for a box plot Parameters: ----------- n_traces : int Number of traces n : int Number of points for each trace mode : string Format for each item 'abc' for alphabet columns 'stocks' for random stock name...	[ "def", "box", "(", "n_traces", "=", "5", ",", "n", "=", "100", ",", "mode", "=", "None", ")", ":", "df", "=", "pd", ".", "DataFrame", "(", "[", "np", ".", "random", ".", "chisquare", "(", "np", ".", "random", ".", "randint", "(", "2", ",", "1...	23.736842	0.061834
def cbow_batch(centers, contexts, num_tokens, dtype, index_dtype): """Create a batch for CBOW training objective.""" contexts_data, contexts_row, contexts_col = contexts centers = mx.nd.array(centers, dtype=index_dtype) contexts = mx.nd.sparse.csr_matrix( (contexts_data, (contexts_row, contexts_...	[ "def", "cbow_batch", "(", "centers", ",", "contexts", ",", "num_tokens", ",", "dtype", ",", "index_dtype", ")", ":", "contexts_data", ",", "contexts_row", ",", "contexts_col", "=", "contexts", "centers", "=", "mx", ".", "nd", ".", "array", "(", "centers", ...	52.5	0.002342
def clustering_gmm(data, n_clusters, tol=1e-7, min_covar=None, scale='logicle'): """ Find clusters in an array using a Gaussian Mixture Model. Before clustering, `data` can be automatically rescaled as specified by the `scale` ...	[ "def", "clustering_gmm", "(", "data", ",", "n_clusters", ",", "tol", "=", "1e-7", ",", "min_covar", "=", "None", ",", "scale", "=", "'logicle'", ")", ":", "# Initialize min_covar parameter", "# Parameter is initialized differently depending on scikit's version", "if", "...	36.764045	0.001488
def calculate(self, token_list_x, token_list_y): ''' Calculate similarity with the Dice coefficient. Concrete method. Args: token_list_x: [token, token, token, ...] token_list_y: [token, token, token, ...] Returns...	[ "def", "calculate", "(", "self", ",", "token_list_x", ",", "token_list_y", ")", ":", "x", ",", "y", "=", "self", ".", "unique", "(", "token_list_x", ",", "token_list_y", ")", "try", ":", "result", "=", "2", "*", "len", "(", "x", "&", "y", ")", "/",...	28.2	0.008576
def addAccount(self, username, domain, password, avatars=None, protocol=u'email', disabled=0, internal=False, verified=True): """ Create a user account, add it to this LoginBase, and return it. This method must be called within a transaction in my store. ...	[ "def", "addAccount", "(", "self", ",", "username", ",", "domain", ",", "password", ",", "avatars", "=", "None", ",", "protocol", "=", "u'email'", ",", "disabled", "=", "0", ",", "internal", "=", "False", ",", "verified", "=", "True", ")", ":", "# unico...	38.463768	0.00147
def load_har_log_entries(file_path): """ load HAR file and return log entries list Args: file_path (str) Returns: list: entries [ { "request": {}, "response": {} }, { "re...	[ "def", "load_har_log_entries", "(", "file_path", ")", ":", "with", "io", ".", "open", "(", "file_path", ",", "\"r+\"", ",", "encoding", "=", "\"utf-8-sig\"", ")", "as", "f", ":", "try", ":", "content_json", "=", "json", ".", "loads", "(", "f", ".", "re...	25.555556	0.001397
def get_activity_search_session(self): """Gets the OsidSession associated with the activity search service. return: (osid.learning.ActivitySearchSession) - a ActivitySearchSession raise: OperationFailed - unable to complete request raise: Unimplemented - suppor...	[ "def", "get_activity_search_session", "(", "self", ")", ":", "if", "not", "self", ".", "supports_activity_search", "(", ")", ":", "raise", "Unimplemented", "(", ")", "try", ":", "from", ".", "import", "sessions", "except", "ImportError", ":", "raise", "Operati...	36.304348	0.002334
def encode_categorical(table, columns=None, **kwargs): """ Encode categorical columns with `M` categories into `M-1` columns according to the one-hot scheme. Parameters ---------- table : pandas.DataFrame Table with categorical columns to encode. columns : list-like, optional, defa...	[ "def", "encode_categorical", "(", "table", ",", "columns", "=", "None", ",", "", "", "kwargs", ")", ":", "if", "isinstance", "(", "table", ",", "pandas", ".", "Series", ")", ":", "if", "not", "is_categorical_dtype", "(", "table", ".", "dtype", ")", "...	35.2	0.002211
def spectral_bandwidth(y=None, sr=22050, S=None, n_fft=2048, hop_length=512, win_length=None, window='hann', center=True, pad_mode='reflect', freq=None, centroid=None, norm=True, p=2): '''Compute p'th-order spectral bandwidth: (sum_k S[k] * (freq[k] - centroid)...	[ "def", "spectral_bandwidth", "(", "y", "=", "None", ",", "sr", "=", "22050", ",", "S", "=", "None", ",", "n_fft", "=", "2048", ",", "hop_length", "=", "512", ",", "win_length", "=", "None", ",", "window", "=", "'hann'", ",", "center", "=", "True", ...	32.460993	0.000636
def should_execute(self): """Confirm if proposed-plan should be executed.""" return self.args.apply and (self.args.no_confirm or self.confirm_execution())	[ "def", "should_execute", "(", "self", ")", ":", "return", "self", ".", "args", ".", "apply", "and", "(", "self", ".", "args", ".", "no_confirm", "or", "self", ".", "confirm_execution", "(", ")", ")" ]	56	0.017647
def JMS_to_FormFlavor_lep(C, dd): """From JMS to semileptonic Fierz basis for Classes V. C should be the JMS basis and `ddll` should be of the form 'sbl_eni_tau', 'dbl_munu_e' etc.""" b = dflav[dd[0]] s = dflav[dd[1]] return { 'CVLL_' + dd + 'mm' : C["VedLL"][1, 1, s, b], 'CVRR_'...	[ "def", "JMS_to_FormFlavor_lep", "(", "C", ",", "dd", ")", ":", "b", "=", "dflav", "[", "dd", "[", "0", "]", "]", "s", "=", "dflav", "[", "dd", "[", "1", "]", "]", "return", "{", "'CVLL_'", "+", "dd", "+", "'mm'", ":", "C", "[", "\"VedLL\"", "...	47.833333	0.011956
def expandvars(text, environ=None): """Expand shell variables of form $var and ${var}. Unknown variables are left unchanged. Args: text (str): String to expand. environ (dict): Environ dict to use for expansions, defaults to os.environ. Returns: The expanded string...	[ "def", "expandvars", "(", "text", ",", "environ", "=", "None", ")", ":", "if", "'$'", "not", "in", "text", ":", "return", "text", "i", "=", "0", "if", "environ", "is", "None", ":", "environ", "=", "os", ".", "environ", "while", "True", ":", "m", ...	23.138889	0.001152
def iterator_mix(*iterators): """ Iterating over list of iterators. Bit like zip, but zip stops after the shortest iterator is empty, abd here we go one until all iterators are empty. """ while True: one_left = False for it in iterators: try: yiel...	[ "def", "iterator_mix", "(", "*", "iterators", ")", ":", "while", "True", ":", "one_left", "=", "False", "for", "it", "in", "iterators", ":", "try", ":", "yield", "it", ".", "next", "(", ")", "except", "StopIteration", ":", "pass", "else", ":", "one_lef...	23.05	0.002083
def setdefault(elt, key, default, ctx=None): """ Get a local property and create default value if local property does not exist. :param elt: local proprety elt to get/create. Not None methods. :param str key: proprety name. :param default: property value to set if key no in local properties...	[ "def", "setdefault", "(", "elt", ",", "key", ",", "default", ",", "ctx", "=", "None", ")", ":", "result", "=", "default", "# get the best context", "if", "ctx", "is", "None", ":", "ctx", "=", "find_ctx", "(", "elt", "=", "elt", ")", "# get elt properties...	28	0.00119
def draw_anti_aliased_pixels(self, x, y1, y2, color): """ vertical anti-aliasing at y1 and y2 """ y_max = max(y1, y2) y_max_int = int(y_max) alpha = y_max - y_max_int if alpha > 0.0 and alpha < 1.0 and y_max_int + 1 < self.image_height: current_pix = self.pixel[int(...	[ "def", "draw_anti_aliased_pixels", "(", "self", ",", "x", ",", "y1", ",", "y2", ",", "color", ")", ":", "y_max", "=", "max", "(", "y1", ",", "y2", ")", "y_max_int", "=", "int", "(", "y_max", ")", "alpha", "=", "y_max", "-", "y_max_int", "if", "alph...	44	0.001854
def memory_usage(proc=-1, interval=.1, timeout=None, timestamps=False, include_children=False, max_usage=False, retval=False, stream=None): """ Return the memory usage of a process or piece of code Parameters ---------- proc : {int, string, tuple, subprocess.Popen}...	[ "def", "memory_usage", "(", "proc", "=", "-", "1", ",", "interval", "=", ".1", ",", "timeout", "=", "None", ",", "timestamps", "=", "False", ",", "include_children", "=", "False", ",", "max_usage", "=", "False", ",", "retval", "=", "False", ",", "strea...	35.653061	0.000743
def cross_validate(self, ax, info=''): ''' Cross-validate to find the optimal value of :py:obj:`lambda`. :param ax: The current :py:obj:`matplotlib.pyplot` axis instance to \ plot the cross-validation results. :param str info: The label to show in the bottom right-hand co...	[ "def", "cross_validate", "(", "self", ",", "ax", ",", "info", "=", "''", ")", ":", "# Loop over all chunks", "ax", "=", "np", ".", "atleast_1d", "(", "ax", ")", "for", "b", ",", "brkpt", "in", "enumerate", "(", "self", ".", "breakpoints", ")", ":", "...	40.623037	0.000252
def require_qt(func): """Specify that a function requires a Qt application. Use this decorator to specify that a function needs a running Qt application before it can run. An error is raised if that is not the case. """ @wraps(func) def wrapped(args, *kwargs): if not QApplication...	[ "def", "require_qt", "(", "func", ")", ":", "@", "wraps", "(", "func", ")", "def", "wrapped", "(", "", "args", ",", "", "*", "kwargs", ")", ":", "if", "not", "QApplication", ".", "instance", "(", ")", ":", "# pragma: no cover", "raise", "RuntimeError...	33.071429	0.002101
def list_pr_comments(repo: GithubRepository, pull_id: int ) -> List[Dict[str, Any]]: """ References: https://developer.github.com/v3/issues/comments/#list-comments-on-an-issue """ url = ("https://api.github.com/repos/{}/{}/issues/{}/comments" "?access_token={}".fo...	[ "def", "list_pr_comments", "(", "repo", ":", "GithubRepository", ",", "pull_id", ":", "int", ")", "->", "List", "[", "Dict", "[", "str", ",", "Any", "]", "]", ":", "url", "=", "(", "\"https://api.github.com/repos/{}/{}/issues/{}/comments\"", "\"?access_token={}\""...	43.5	0.00125
def get_fax(self, fax_id, **kwargs): # noqa: E501 """Get a fax record # noqa: E501 Get a specific fax record details like duration, pages etc. # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async=True >>...	[ "def", "get_fax", "(", "self", ",", "fax_id", ",", "", "", "kwargs", ")", ":", "# noqa: E501", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'async'", ")", ":", "return", "self", ".", "get_fax_with_http_in...	40.666667	0.002288
def trac_tickets(self): ''' Looks for any of the following trac ticket formats in the description field: t12345, t 12345, T12345, T 12345, #12345, # 12345, ticket 12345, TICKET 12345 ''' # ticket_numbers = re.findall(re.compile("([t#]\s?[0-9]{2,})\|([t#][0-9]{2,})", re.IGNORE...	[ "def", "trac_tickets", "(", "self", ")", ":", "# ticket_numbers = re.findall(re.compile(\"([t#]\\s?[0-9]{2,})\|([t#][0-9]{2,})\", re.IGNORECASE), self.description)", "ticket_numbers", "=", "re", ".", "findall", "(", "r\"^[tT#]\\s?[0-9]+\"", ",", "self", ".", "description", ")", ...	51.5	0.010899
def process_exception(self, request: AxesHttpRequest, exception): # pylint: disable=inconsistent-return-statements """ Exception handler that processes exceptions raised by the Axes signal handler when request fails with login. Only ``axes.exceptions.AxesSignalPermissionDenied`` exception is h...	[ "def", "process_exception", "(", "self", ",", "request", ":", "AxesHttpRequest", ",", "exception", ")", ":", "# pylint: disable=inconsistent-return-statements", "if", "isinstance", "(", "exception", ",", "AxesSignalPermissionDenied", ")", ":", "return", "get_lockout_respo...	51.333333	0.010638
def obs_groups(self): """get the observation groups Returns ------- obs_groups : list a list of unique observation groups """ og = list(self.observation_data.groupby("obgnme").groups.keys()) #og = list(map(pst_utils.SFMT, og)) return og	[ "def", "obs_groups", "(", "self", ")", ":", "og", "=", "list", "(", "self", ".", "observation_data", ".", "groupby", "(", "\"obgnme\"", ")", ".", "groups", ".", "keys", "(", ")", ")", "#og = list(map(pst_utils.SFMT, og))", "return", "og" ]	25.25	0.009554
def varianceOfLaplacian(img): ''''LAPV' algorithm (Pech2000)''' lap = cv2.Laplacian(img, ddepth=-1)#cv2.cv.CV_64F) stdev = cv2.meanStdDev(lap)[1] s = stdev[0]**2 return s[0]	[ "def", "varianceOfLaplacian", "(", "img", ")", ":", "lap", "=", "cv2", ".", "Laplacian", "(", "img", ",", "ddepth", "=", "-", "1", ")", "#cv2.cv.CV_64F)\r", "stdev", "=", "cv2", ".", "meanStdDev", "(", "lap", ")", "[", "1", "]", "s", "=", "stdev", ...	32.166667	0.015152
def matches(property_name, regex, *, present_optional=False, message=None): """Returns a Validation that checks a property against a regex.""" def check(val): """Checks that a value matches a scope-enclosed regex.""" if not val: return present_optional else: return True if rege...	[ "def", "matches", "(", "property_name", ",", "regex", ",", "*", ",", "present_optional", "=", "False", ",", "message", "=", "None", ")", ":", "def", "check", "(", "val", ")", ":", "\"\"\"Checks that a value matches a scope-enclosed regex.\"\"\"", "if", "not", "v...	38.9	0.01005
def ximplot(ycut, title=None, show=True, plot_bbox=(0, 0), geometry=(0, 0, 640, 480), tight_layout=True, debugplot=None): """Auxiliary function to display 1d plot. Parameters ---------- ycut : 1d numpy array, float Array to be displayed. title : string Plot t...	[ "def", "ximplot", "(", "ycut", ",", "title", "=", "None", ",", "show", "=", "True", ",", "plot_bbox", "=", "(", "0", ",", "0", ")", ",", "geometry", "=", "(", "0", ",", "0", ",", "640", ",", "480", ")", ",", "tight_layout", "=", "True", ",", ...	31.478723	0.000328
def create_config_files(directory): """ For each VPN file in directory/vpns, create a new configuration file and all the associated directories Note: the expected directory structure is args.directory -----vpns (contains the OpenVPN config files -----configs (contains the Centinel config fi...	[ "def", "create_config_files", "(", "directory", ")", ":", "logging", ".", "info", "(", "\"Starting to create config files from openvpn files\"", ")", "vpn_dir", "=", "return_abs_path", "(", "directory", ",", "\"vpns\"", ")", "conf_dir", "=", "return_abs_path", "(", "d...	39.645833	0.000513
def record_strip_empty_fields(rec, tag=None): """ Remove empty subfields and fields from the record. If 'tag' is not None, only a specific tag of the record will be stripped, otherwise the whole record. :param rec: A record dictionary structure :type rec: dictionary :param tag: The tag...	[ "def", "record_strip_empty_fields", "(", "rec", ",", "tag", "=", "None", ")", ":", "# Check whole record", "if", "tag", "is", "None", ":", "tags", "=", "rec", ".", "keys", "(", ")", "for", "tag", "in", "tags", ":", "record_strip_empty_fields", "(", "rec", ...	33.727273	0.00131
def create_default_units_and_dimensions(): """ Adds the units and the dimensions reading a json file. It adds only dimensions and units that are not inside the db It is possible adding new dimensions and units to the DB just modifiyin the json file """ default_units_file_location = os.path.r...	[ "def", "create_default_units_and_dimensions", "(", ")", ":", "default_units_file_location", "=", "os", ".", "path", ".", "realpath", "(", "os", ".", "path", ".", "join", "(", "os", ".", "path", ".", "dirname", "(", "os", ".", "path", ".", "realpath", "(", ...	41.855072	0.008119
def get_queryset(self): """ Returns a queryset of models for the month requested """ qs = super(BaseCalendarMonthView, self).get_queryset() year = self.get_year() month = self.get_month() date_field = self.get_date_field() end_date_field = self.get_end_d...	[ "def", "get_queryset", "(", "self", ")", ":", "qs", "=", "super", "(", "BaseCalendarMonthView", ",", "self", ")", ".", "get_queryset", "(", ")", "year", "=", "self", ".", "get_year", "(", ")", "month", "=", "self", ".", "get_month", "(", ")", "date_fie...	38.258065	0.002055
def get_dicts_generator(word_min_freq=4, char_min_freq=2, word_ignore_case=False, char_ignore_case=False): """Get word and character dictionaries from sentences. :param word_min_freq: The minimum frequency of a word. :param char_min_fr...	[ "def", "get_dicts_generator", "(", "word_min_freq", "=", "4", ",", "char_min_freq", "=", "2", ",", "word_ignore_case", "=", "False", ",", "char_ignore_case", "=", "False", ")", ":", "word_count", ",", "char_count", "=", "{", "}", ",", "{", "}", "def", "get...	41.568627	0.001382
def make_ordinary_result(result, key, trajectory=None, reload=True): """Turns a given shared data item into a an ordinary one. :param result: Result container with shared data :param key: The name of the shared data :param trajectory: The trajectory, only needed if shared data has no a...	[ "def", "make_ordinary_result", "(", "result", ",", "key", ",", "trajectory", "=", "None", ",", "reload", "=", "True", ")", ":", "shared_data", "=", "result", ".", "f_get", "(", "key", ")", "if", "trajectory", "is", "not", "None", ":", "shared_data", ".",...	29.791667	0.001355
def integrate_days(self, days=1.0, verbose=True): """Integrates the model forward for a specified number of days. It convertes the given number of days into years and calls :func:`integrate_years`. :param float days: integration time for the model in days ...	[ "def", "integrate_days", "(", "self", ",", "days", "=", "1.0", ",", "verbose", "=", "True", ")", ":", "years", "=", "days", "/", "const", ".", "days_per_year", "self", ".", "integrate_years", "(", "years", "=", "years", ",", "verbose", "=", "verbose", ...	33.903226	0.00185
def _any_would_run(func, filenames, *args): """True if a linter function would be called on any of filenames.""" if os.environ.get("_POLYSQUARE_GENERIC_FILE_LINTER_NO_STAMPING", None): return True for filename in filenames: # suppress(E204) stamp_args, stamp_kwargs = _run_lint_on_fi...	[ "def", "_any_would_run", "(", "func", ",", "filenames", ",", "*", "args", ")", ":", "if", "os", ".", "environ", ".", "get", "(", "\"_POLYSQUARE_GENERIC_FILE_LINTER_NO_STAMPING\"", ",", "None", ")", ":", "return", "True", "for", "filename", "in", "filenames", ...	38.888889	0.001395
def referenceLengths(self): """ Get the lengths of wanted references. @raise UnknownReference: If a reference id is not present in the SAM/BAM file. @return: A C{dict} of C{str} reference id to C{int} length with a key for each reference id in C{self.referenceIds...	[ "def", "referenceLengths", "(", "self", ")", ":", "result", "=", "{", "}", "with", "samfile", "(", "self", ".", "filename", ")", "as", "sam", ":", "if", "self", ".", "referenceIds", ":", "for", "referenceId", "in", "self", ".", "referenceIds", ":", "ti...	39.2	0.001992
def _get_localization_env(self, inputs, user_project): """Return a dict with variables for the 'localization' action.""" # Add variables for paths that need to be localized, for example: # INPUT_COUNT: 1 # INPUT_0: MY_INPUT_FILE # INPUT_RECURSIVE_0: 0 # INPUT_SRC_0: gs://mybucket/mypath/myfile ...	[ "def", "_get_localization_env", "(", "self", ",", "inputs", ",", "user_project", ")", ":", "# Add variables for paths that need to be localized, for example:", "# INPUT_COUNT: 1", "# INPUT_0: MY_INPUT_FILE", "# INPUT_RECURSIVE_0: 0", "# INPUT_SRC_0: gs://mybucket/mypath/myfile", "# INP...	36.5	0.00858
def _format_rules_for_eos(self, rules): """Format list of rules for EOS and sort into ingress/egress rules""" in_rules = [] eg_rules = [] for rule in rules: protocol = rule.get('protocol') cidr = rule.get('remote_ip_prefix', 'any') min_port = rule.get(...	[ "def", "_format_rules_for_eos", "(", "self", ",", "rules", ")", ":", "in_rules", "=", "[", "]", "eg_rules", "=", "[", "]", "for", "rule", "in", "rules", ":", "protocol", "=", "rule", ".", "get", "(", "'protocol'", ")", "cidr", "=", "rule", ".", "get"...	47.25	0.002075
def calc_adc_params(self): """ Compute appropriate adc_gain and baseline parameters for adc conversion, given the physical signal and the fmts. Returns ------- adc_gains : list List of calculated `adc_gain` values for each channel. baselines : list ...	[ "def", "calc_adc_params", "(", "self", ")", ":", "adc_gains", "=", "[", "]", "baselines", "=", "[", "]", "if", "np", ".", "where", "(", "np", ".", "isinf", "(", "self", ".", "p_signal", ")", ")", "[", "0", "]", ".", "size", ":", "raise", "ValueEr...	38.345794	0.000475
def get_cell_length(flow_model): """Get flow direction induced cell length dict. Args: flow_model: Currently, "TauDEM", "ArcGIS", and "Whitebox" are supported. """ assert flow_model.lower() in FlowModelConst.d8_lens return FlowModelConst.d8_lens.get(flow_model.lower()...	[ "def", "get_cell_length", "(", "flow_model", ")", ":", "assert", "flow_model", ".", "lower", "(", ")", "in", "FlowModelConst", ".", "d8_lens", "return", "FlowModelConst", ".", "d8_lens", ".", "get", "(", "flow_model", ".", "lower", "(", ")", ")" ]	45	0.009346
def coroutine(func): """ Initializes coroutine essentially priming it to the yield statement. Used as a decorator over functions that generate coroutines. .. code-block:: python # Basic coroutine producer/consumer pattern from translate import coroutine @coroutine def ...	[ "def", "coroutine", "(", "func", ")", ":", "@", "wraps", "(", "func", ")", "def", "initialization", "(", "", "args", ",", "", "", "kwargs", ")", ":", "start", "=", "func", "(", "", "args", ",", "", "", "kwargs", ")", "next", "(", "start", ...	21.5	0.001236
def push_file(): """ Push a file to the server """ #NOTE beware that reading post data in flask causes hang until file upload is complete session_token = request.headers['session_token'] repository = request.headers['repository'] #=== current_user = have_authenticated_user(request.environ['REMO...	[ "def", "push_file", "(", ")", ":", "#NOTE beware that reading post data in flask causes hang until file upload is complete", "session_token", "=", "request", ".", "headers", "[", "'session_token'", "]", "repository", "=", "request", ".", "headers", "[", "'repository'", "]",...	37.675	0.013583
def _addKeyToQueue(self, keychr, modFlags=0, globally=False): """Add keypress to queue. Parameters: key character or constant referring to a non-alpha-numeric key (e.g. RETURN or TAB) modifiers global or app specific Returns: None or r...	[ "def", "_addKeyToQueue", "(", "self", ",", "keychr", ",", "modFlags", "=", "0", ",", "globally", "=", "False", ")", ":", "# Awkward, but makes modifier-key-only combinations possible", "# (since sendKeyWithModifiers() calls this)", "if", "not", "keychr", ":", "return", ...	41.40625	0.001106
def update_router(self, router, body=None): """Updates a router.""" return self.put(self.router_path % (router), body=body)	[ "def", "update_router", "(", "self", ",", "router", ",", "body", "=", "None", ")", ":", "return", "self", ".", "put", "(", "self", ".", "router_path", "%", "(", "router", ")", ",", "body", "=", "body", ")" ]	45.666667	0.014388
def create_or_update_vmextension(call=None, kwargs=None): # pylint: disable=unused-argument ''' .. versionadded:: 2019.2.0 Create or update a VM extension object "inside" of a VM object. required kwargs: .. code-block:: yaml extension_name: myvmextension virtual_machine_name: m...	[ "def", "create_or_update_vmextension", "(", "call", "=", "None", ",", "kwargs", "=", "None", ")", ":", "# pylint: disable=unused-argument", "if", "kwargs", "is", "None", ":", "kwargs", "=", "{", "}", "if", "'extension_name'", "not", "in", "kwargs", ":", "raise...	33.403846	0.001957
def connect_get_namespaced_pod_proxy(self, name, namespace, **kwargs): # noqa: E501 """connect_get_namespaced_pod_proxy # noqa: E501 connect GET requests to proxy of Pod # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please...	[ "def", "connect_get_namespaced_pod_proxy", "(", "self", ",", "name", ",", "namespace", ",", "", "", "kwargs", ")", ":", "# noqa: E501", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'async_req'", ")", ":", "...	52.782609	0.001618
def move(self, d_xyz, inplace=False): """ Translate the whole Space in x, y and z coordinates. :param d_xyz: displacement in x, y(, and z). :type d_xyz: tuple (len=2 or 3) :param inplace: If True, the moved ``pyny.Space`` is copied and added to the cu...	[ "def", "move", "(", "self", ",", "d_xyz", ",", "inplace", "=", "False", ")", ":", "state", "=", "Polygon", ".", "verify", "Polygon", ".", "verify", "=", "False", "if", "len", "(", "d_xyz", ")", "==", "2", ":", "d_xyz", "=", "(", "d_xyz", "[", "0"...	33.888889	0.008502
def _einsum_equation(input_shapes, output_shape): """Turn shapes into an einsum equation. e.g. "ij,jk->ik" Args: input_shapes: a list of Shapes output_shape: a Shape Returns: a string """ ret = [] next_letter = ord("a") dim_to_letter = {} for shape_num, shape in enumerate(input_shapes + ...	[ "def", "_einsum_equation", "(", "input_shapes", ",", "output_shape", ")", ":", "ret", "=", "[", "]", "next_letter", "=", "ord", "(", "\"a\"", ")", "dim_to_letter", "=", "{", "}", "for", "shape_num", ",", "shape", "in", "enumerate", "(", "input_shapes", "+"...	23.230769	0.017488
def putrequest(self, method, url, skip_host=0, skip_accept_encoding=0): """Send a request to the server. `method' specifies an HTTP request method, e.g. 'GET'. `url' specifies the object being requested, e.g. '/index.html'. `skip_host' if True does not add automatically a 'Host:' header...	[ "def", "putrequest", "(", "self", ",", "method", ",", "url", ",", "skip_host", "=", "0", ",", "skip_accept_encoding", "=", "0", ")", ":", "# if a prior response has been completed, then forget about it.", "if", "self", ".", "__response", "and", "self", ".", "__res...	43.834783	0.00097
def get_extra_vehicle_info(self, authentication_info): """Get extra data from the API.""" import requests base_url = "https://secure.ritassist.nl/GenericServiceJSONP.ashx" query = "?f=CheckExtraVehicleInfo" \ "&token={token}" \ "&equipmentId={identifier}"...	[ "def", "get_extra_vehicle_info", "(", "self", ",", "authentication_info", ")", ":", "import", "requests", "base_url", "=", "\"https://secure.ritassist.nl/GenericServiceJSONP.ashx\"", "query", "=", "\"?f=CheckExtraVehicleInfo\"", "\"&token={token}\"", "\"&equipmentId={identifier}\""...	37.136364	0.002387
def allow_implicit_stop(gen_func): """ Fix the backwards-incompatible PEP-0479 gotcha/bug https://www.python.org/dev/peps/pep-0479 """ @functools.wraps(gen_func) def wrapper(args, *kwargs): with warnings.catch_warnings(): for cls in [DeprecationWarning, PendingDeprecationWa...	[ "def", "allow_implicit_stop", "(", "gen_func", ")", ":", "@", "functools", ".", "wraps", "(", "gen_func", ")", "def", "wrapper", "(", "", "args", ",", "", "*", "kwargs", ")", ":", "with", "warnings", ".", "catch_warnings", "(", ")", ":", "for", "cls"...	34.5	0.001282
def _pdf_find_urls(bytes, mimetype): """ This function finds URLs inside of PDF bytes. """ # Start with only the ASCII bytes. Limit it to 12+ character strings. try: ascii_bytes = b' '.join(re.compile(b'[\x00\x09\x0A\x0D\x20-\x7E]{12,}').findall(bytes)) ascii_bytes = ascii_bytes.replace(b'\...	[ "def", "_pdf_find_urls", "(", "bytes", ",", "mimetype", ")", ":", "# Start with only the ASCII bytes. Limit it to 12+ character strings.", "try", ":", "ascii_bytes", "=", "b' '", ".", "join", "(", "re", ".", "compile", "(", "b'[\\x00\\x09\\x0A\\x0D\\x20-\\x7E]{12,}'", ")"...	38.419355	0.015561
def xinfo_help(self): """Retrieve help regarding the ``XINFO`` sub-commands""" fut = self.execute(b'XINFO', b'HELP') return wait_convert(fut, lambda l: b'\n'.join(l))	[ "def", "xinfo_help", "(", "self", ")", ":", "fut", "=", "self", ".", "execute", "(", "b'XINFO'", ",", "b'HELP'", ")", "return", "wait_convert", "(", "fut", ",", "lambda", "l", ":", "b'\\n'", ".", "join", "(", "l", ")", ")" ]	46.75	0.010526

def try_ntime(max_try, func, *args, **kwargs): """ Try execute a function n times, until no exception raised or tried ``max_try`` times. **中文文档** 反复尝试执行一个函数若干次。直到成功为止或是重复尝试 ``max_try`` 次。期间只要有一次成功, 就正常返回。如果一次都没有成功, 则行为跟最后一次执行了 ``func(*args, **kwargs)`` 一样。 """ if max_try < 1: ...

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def _forward_iterator(self): "Returns a forward iterator over the trie" path = [(self, 0, Bits())] while path: node, idx, prefix = path.pop() if idx==0 and node.value is not None and not node.prune_value: yield (self._unpickle_key(prefix), self._unpickle_v...

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def command(self): """ Returns a string representing the command you have to type to obtain the same packet """ f = [] for fn, fv in six.iteritems(self.fields): fld = self.get_field(fn) if isinstance(fv, (list, dict, set)) and len(fv) == 0: ...

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def delete(stack, region, profile): """ Delete the given CloudFormation stack. """ ini_data = {} environment = {} environment['stack_name'] = stack if region: environment['region'] = region else: environment['region'] = find_myself() if profile: environment[...

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def serialize( self, value, # type: Any state # type: _ProcessorState ): # type: (...) -> ET.Element """Serialize the value to a new element and returns the element.""" dict_value = self._converter.to_dict(value) return self._dictionary.serialize...

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def filter_by_transcript_expression( self, transcript_expression_dict, min_expression_value=0.0): """ Filters variants down to those which have overlap a transcript whose expression value in the transcript_expression_dict argument is greater than min_e...

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def solve(A, b, x0=None, tol=1e-5, maxiter=400, return_solver=False, existing_solver=None, verb=True, residuals=None): """Solve Ax=b. Solve the arbitrary system Ax=b with the best out-of-the box choice for a solver. The matrix A can be non-Hermitian, indefinite, Hermitian positive-definite, ...

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def image_to_url(image, colormap=None, origin='upper'): """ Infers the type of an image argument and transforms it into a URL. Parameters ---------- image: string, file or array-like object * If string, it will be written directly in the output file. * If file, it's content will be ...

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def set_auth_key_from_file(user, source, config='.ssh/authorized_keys', saltenv='base', fingerprint_hash_type=None): ''' Add a key to the authorized_keys file, using a file as the source. CLI Example...

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def dir_ensure(location, recursive=False, mode=None, owner=None, group=None, use_sudo=False): """ cuisine dir_ensure doesn't do sudo, so we implement our own Ensures that there is a remote directory at the given location, optionally updating its mode/owner/group. If we are not updating th...

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def extract_response(raw_response): """Extract requests response object. only extract those status_code in [200, 300). :param raw_response: a requests.Resposne object. :return: content of response. """ data = urlread(raw_response) if is_success_response(raw_response): return data ...

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def profiling_query_formatter(view, context, query_document, name): """Format a ProfilingQuery entry for a ProfilingRequest detail field Parameters ---------- query_document : model.ProfilingQuery """ return Markup( ''.join( [ '<div class="pymongo-query row">...

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def build_tr(tr, meta_data, row_spans): """ This will return a single tr element, with all tds already populated. """ # Create a blank tr element. tr_el = etree.Element('tr') w_namespace = get_namespace(tr, 'w') visited_nodes = [] for el in tr: if el in visited_nodes: ...

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def _make_hostport(conn, default_host, default_port, default_user='', default_password=None): """Convert a '[user[:pass]@]host:port' string to a Connection tuple. If the given connection is empty, use defaults. If no port is given, use the default. Args: conn (str): the string describing the t...

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def get(cls, parent, name): """Get an instance matching the parent and name""" return cls.query.filter_by(parent=parent, name=name).one_or_none()

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def filter(self, term_doc_matrix): ''' Parameters ---------- term_doc_matrix : TermDocMatrix Returns ------- TermDocMatrix pmi-filterd term doc matrix ''' df = term_doc_matrix.get_term_freq_df() if len(df) == 0: return term_doc_matrix low_pmi_bigrams = get_low_pmi_bigrams(self._threshold_coef...

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def is_bit_mask(enumeration, potential_mask): """ A utility function that checks if the provided value is a composite bit mask of enumeration values in the specified enumeration class. Args: enumeration (class): One of the mask enumeration classes found in this file. These include: ...

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def find_rdataset(self, name, rdtype, covers=dns.rdatatype.NONE, create=False): """Look for rdata with the specified name and type in the zone, and return an rdataset encapsulating it. The I{name}, I{rdtype}, and I{covers} parameters may be strings, in which case t...

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def get_surveys(self): """Gets all surveys in account Args: None Returns: list: a list of all surveys """ payload = { 'Request': 'getSurveys', 'Format': 'JSON' } r = self._session.get(QUALT...

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def user(val, **kwargs): # pylint: disable=unused-argument ''' This can be either a string or a numeric uid ''' if not isinstance(val, six.integer_types): # Try to convert to integer. This will fail if the value is a # username. This is OK, as we check below to make sure that the ...

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def _get_info_score(info): """ Helper function for _bestmove_get_info. Example inputs: score cp -100 <- engine is behind 100 centipawns score mate 3 <- engine has big lead or checkmated opponent """ search = re.search(pattern="score (?P<eval>\w+) ...

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def stage_all(self): """ Stages all changed and untracked files """ LOGGER.info('Staging all files') self.repo.git.add(A=True)

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def re_general(Vel, Area, PerimWetted, Nu): """Return the Reynolds Number for a general cross section.""" #Checking input validity - inputs not checked here are checked by #functions this function calls. ut.check_range([Vel, ">=0", "Velocity"], [Nu, ">0", "Nu"]) return 4 * radius_hydraulic_general(A...

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def rgb_to_hsv(r, g=None, b=None): """Convert the color from RGB coordinates to HSV. Parameters: :r: The Red component value [0...1] :g: The Green component value [0...1] :b: The Blue component value [0...1] Returns: The color as an (h, s, v) tuple in the range: h[0...360],...

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def unit(n, d=None, j=None, tt_instance=True): ''' Generates e_j _vector in tt.vector format --------- Parameters: n - modes (either integer or array) d - dimensionality (integer) j - position of 1 in full-format e_j (integer) tt_instance - if True, returns tt.vector; ...

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def run(command, parser, cl_args, unknown_args): """ run command """ try: clusters = tracker_access.get_clusters() except: Log.error("Fail to connect to tracker: \'%s\'", cl_args["tracker_url"]) return False print('Available clusters:') for cluster in clusters: print(' %s' % cluster) return...

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def do_thing(): """Execute command line cryptorito actions""" if len(sys.argv) == 5 and sys.argv[1] == "encrypt_file": encrypt_file(sys.argv[2], sys.argv[3], sys.argv[4]) elif len(sys.argv) == 4 and sys.argv[1] == "decrypt_file": decrypt_file(sys.argv[2], sys.argv[3]) elif len(sys.argv) ...

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def next(self): """Next point in iteration """ x, y = next(self.scan) xs = int(round(x)) ys = int(round(y)) return xs, ys

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def from_object(updates): "Update same name (or prefixed) settings." import sys config = sys.modules[__name__] prefix = config.__name__.split('.')[0].upper() keys = [k for k in config.__dict__ if \ k != from_object.__name__ and not k.startswith('_')] get_value = lambda c, k: hasattr...

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def _create_lookup(self, branched_action_space): """ Creates a Dict that maps discrete actions (scalars) to branched actions (lists). Each key in the Dict maps to one unique set of branched actions, and each value contains the List of branched actions. """ possible_vals =...

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def configure_splitevaluator(self): """ Configures and returns the SplitEvaluator and Classifier instance as tuple. :return: evaluator and classifier :rtype: tuple """ if self.classification: speval = javabridge.make_instance("weka/experiment/ClassifierSplitE...

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def prune_graph(graph_str, package_name): """Prune a package graph so it only contains nodes accessible from the given package. Args: graph_str (str): Dot-language graph string. package_name (str): Name of package of interest. Returns: Pruned graph, as a string. """ # f...

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def setOutputObject(self, newOutput=output.CalcpkgOutput(True, True)): """Set an object where all output from calcpkg will be redirected to for this repository""" self.output = newOutput

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def acquire(self, blocking=True, timeout=None): """Acquire the lock. If *blocking* is true (the default), then this will block until the lock can be acquired. The *timeout* parameter specifies an optional timeout in seconds. The return value is a boolean indicating whether the ...

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def fadeGrid(self, fSeconds, bFadeIn): """Fading the Grid in or out in fSeconds""" fn = self.function_table.fadeGrid fn(fSeconds, bFadeIn)

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def initialize(self, configfile=None): """Initialize and load the Fortran library (and model, if applicable). The Fortran library is loaded and ctypes is used to annotate functions inside the library. The Fortran library's initialization is called. Normally a path to an ``*.ini`` model...

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def calczmax(self): """ NAME: calczmax PURPOSE: calculate the maximum height INPUT: OUTPUT: zmax HISTORY: 2012-06-01 - Written - Bovy (IAS) """ if hasattr(self,'_zmax'): #pragma: no cover return self....

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def iterparse(filelike, encoding=None, handler_class=DrillHandler, xpath=None): """ :param filelike: A file-like object with a ``read`` method :returns: An iterator yielding :class:`XmlElement` objects """ parser = expat.ParserCreate(encoding) elem_iter = DrillElementIterator(filelike, parser) ...

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def create (netParams=None, simConfig=None, output=False): ''' Sequence of commands to create network ''' from .. import sim import __main__ as top if not netParams: netParams = top.netParams if not simConfig: simConfig = top.simConfig sim.initialize(netParams, simConfig) # create network obje...

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def execute_task(task_id, verbosity=None, runmode='run', sigmode=None, monitor_interval=5, resource_monitor_interval=60): '''Execute single or master task, return a dictionary''' tf = TaskFile(task_id) # this will automati...

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def crossmap(fas, reads, options, no_shrink, keepDB, threads, cluster, nodes): """ map all read sets against all fasta files """ if cluster is True: threads = '48' btc = [] for fa in fas: btd = bowtiedb(fa, keepDB) F, R, U = reads if F is not False: if...

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def createCombinedSequenceColumn(network, networkConfig, suffix=""): """ Create a a single column containing one L4, one L2, and one TM. networkConfig is a dict that must contain the following keys (additional keys ok): { "externalInputSize": 1024, "sensorInputSize": 1024, "L2Params": { ...

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def vm_netstats(vm_=None): ''' Return combined network counters used by the vms on this hyper in a list of dicts: .. code-block:: python [ 'your-vm': { 'io_read_kbs' : 0, 'io_total_read_kbs' : 0, 'io_total_write_kbs' ...

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def postOptions(self): """ Display details about the ports which already exist. """ store = self.parent.parent.getStore() port = None factories = {} for portType in [TCPPort, SSLPort, StringEndpointPort]: for port in store.query(portType): ...

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async def quit(self, message=None): """ Quit network. """ if message is None: message = self.DEFAULT_QUIT_MESSAGE await self.rawmsg('QUIT', message) await self.disconnect(expected=True)

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def add_alias(self, entry): """ Adds id to the current list 'aliased_by' """ assert isinstance(entry, SymbolVAR) self.aliased_by.append(entry)

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def get_policy_info(policy_name, policy_class, adml_language='en-US'): r''' Returns information about a specified policy Args: policy_name (str): The name of the policy to lookup policy_class (str): The class of policy, i.e. ma...

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def box(n_traces=5,n=100,mode=None): """ Returns a DataFrame with the required format for a box plot Parameters: ----------- n_traces : int Number of traces n : int Number of points for each trace mode : string Format for each item 'abc' for alphabet columns 'stocks' for random stock name...

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def cbow_batch(centers, contexts, num_tokens, dtype, index_dtype): """Create a batch for CBOW training objective.""" contexts_data, contexts_row, contexts_col = contexts centers = mx.nd.array(centers, dtype=index_dtype) contexts = mx.nd.sparse.csr_matrix( (contexts_data, (contexts_row, contexts_...

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def clustering_gmm(data, n_clusters, tol=1e-7, min_covar=None, scale='logicle'): """ Find clusters in an array using a Gaussian Mixture Model. Before clustering, `data` can be automatically rescaled as specified by the `scale` ...

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36.764045

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def calculate(self, token_list_x, token_list_y): ''' Calculate similarity with the Dice coefficient. Concrete method. Args: token_list_x: [token, token, token, ...] token_list_y: [token, token, token, ...] Returns...

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def addAccount(self, username, domain, password, avatars=None, protocol=u'email', disabled=0, internal=False, verified=True): """ Create a user account, add it to this LoginBase, and return it. This method must be called within a transaction in my store. ...

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38.463768

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def load_har_log_entries(file_path): """ load HAR file and return log entries list Args: file_path (str) Returns: list: entries [ { "request": {}, "response": {} }, { "re...

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def get_activity_search_session(self): """Gets the OsidSession associated with the activity search service. return: (osid.learning.ActivitySearchSession) - a ActivitySearchSession raise: OperationFailed - unable to complete request raise: Unimplemented - suppor...

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def encode_categorical(table, columns=None, **kwargs): """ Encode categorical columns with `M` categories into `M-1` columns according to the one-hot scheme. Parameters ---------- table : pandas.DataFrame Table with categorical columns to encode. columns : list-like, optional, defa...

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def spectral_bandwidth(y=None, sr=22050, S=None, n_fft=2048, hop_length=512, win_length=None, window='hann', center=True, pad_mode='reflect', freq=None, centroid=None, norm=True, p=2): '''Compute p'th-order spectral bandwidth: (sum_k S[k] * (freq[k] - centroid)...

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def should_execute(self): """Confirm if proposed-plan should be executed.""" return self.args.apply and (self.args.no_confirm or self.confirm_execution())

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def JMS_to_FormFlavor_lep(C, dd): """From JMS to semileptonic Fierz basis for Classes V. C should be the JMS basis and `ddll` should be of the form 'sbl_eni_tau', 'dbl_munu_e' etc.""" b = dflav[dd[0]] s = dflav[dd[1]] return { 'CVLL_' + dd + 'mm' : C["VedLL"][1, 1, s, b], 'CVRR_'...

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def expandvars(text, environ=None): """Expand shell variables of form $var and ${var}. Unknown variables are left unchanged. Args: text (str): String to expand. environ (dict): Environ dict to use for expansions, defaults to os.environ. Returns: The expanded string...

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def iterator_mix(*iterators): """ Iterating over list of iterators. Bit like zip, but zip stops after the shortest iterator is empty, abd here we go one until all iterators are empty. """ while True: one_left = False for it in iterators: try: yiel...

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23.05

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def setdefault(elt, key, default, ctx=None): """ Get a local property and create default value if local property does not exist. :param elt: local proprety elt to get/create. Not None methods. :param str key: proprety name. :param default: property value to set if key no in local properties...

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28

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def draw_anti_aliased_pixels(self, x, y1, y2, color): """ vertical anti-aliasing at y1 and y2 """ y_max = max(y1, y2) y_max_int = int(y_max) alpha = y_max - y_max_int if alpha > 0.0 and alpha < 1.0 and y_max_int + 1 < self.image_height: current_pix = self.pixel[int(...

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44

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def memory_usage(proc=-1, interval=.1, timeout=None, timestamps=False, include_children=False, max_usage=False, retval=False, stream=None): """ Return the memory usage of a process or piece of code Parameters ---------- proc : {int, string, tuple, subprocess.Popen}...

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def cross_validate(self, ax, info=''): ''' Cross-validate to find the optimal value of :py:obj:`lambda`. :param ax: The current :py:obj:`matplotlib.pyplot` axis instance to \ plot the cross-validation results. :param str info: The label to show in the bottom right-hand co...

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def require_qt(func): """Specify that a function requires a Qt application. Use this decorator to specify that a function needs a running Qt application before it can run. An error is raised if that is not the case. """ @wraps(func) def wrapped(*args, **kwargs): if not QApplication...

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33.071429

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def list_pr_comments(repo: GithubRepository, pull_id: int ) -> List[Dict[str, Any]]: """ References: https://developer.github.com/v3/issues/comments/#list-comments-on-an-issue """ url = ("https://api.github.com/repos/{}/{}/issues/{}/comments" "?access_token={}".fo...

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43.5

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def get_fax(self, fax_id, **kwargs): # noqa: E501 """Get a fax record # noqa: E501 Get a specific fax record details like duration, pages etc. # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async=True >>...

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40.666667

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def trac_tickets(self): ''' Looks for any of the following trac ticket formats in the description field: t12345, t 12345, T12345, T 12345, #12345, # 12345, ticket 12345, TICKET 12345 ''' # ticket_numbers = re.findall(re.compile("([t#]\s?[0-9]{2,})|([t#][0-9]{2,})", re.IGNORE...

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51.5

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def process_exception(self, request: AxesHttpRequest, exception): # pylint: disable=inconsistent-return-statements """ Exception handler that processes exceptions raised by the Axes signal handler when request fails with login. Only ``axes.exceptions.AxesSignalPermissionDenied`` exception is h...

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51.333333

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def obs_groups(self): """get the observation groups Returns ------- obs_groups : list a list of unique observation groups """ og = list(self.observation_data.groupby("obgnme").groups.keys()) #og = list(map(pst_utils.SFMT, og)) return og

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def varianceOfLaplacian(img): ''''LAPV' algorithm (Pech2000)''' lap = cv2.Laplacian(img, ddepth=-1)#cv2.cv.CV_64F) stdev = cv2.meanStdDev(lap)[1] s = stdev[0]**2 return s[0]

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def matches(property_name, regex, *, present_optional=False, message=None): """Returns a Validation that checks a property against a regex.""" def check(val): """Checks that a value matches a scope-enclosed regex.""" if not val: return present_optional else: return True if rege...

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def ximplot(ycut, title=None, show=True, plot_bbox=(0, 0), geometry=(0, 0, 640, 480), tight_layout=True, debugplot=None): """Auxiliary function to display 1d plot. Parameters ---------- ycut : 1d numpy array, float Array to be displayed. title : string Plot t...

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def create_config_files(directory): """ For each VPN file in directory/vpns, create a new configuration file and all the associated directories Note: the expected directory structure is args.directory -----vpns (contains the OpenVPN config files -----configs (contains the Centinel config fi...

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def record_strip_empty_fields(rec, tag=None): """ Remove empty subfields and fields from the record. If 'tag' is not None, only a specific tag of the record will be stripped, otherwise the whole record. :param rec: A record dictionary structure :type rec: dictionary :param tag: The tag...

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def create_default_units_and_dimensions(): """ Adds the units and the dimensions reading a json file. It adds only dimensions and units that are not inside the db It is possible adding new dimensions and units to the DB just modifiyin the json file """ default_units_file_location = os.path.r...

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def get_queryset(self): """ Returns a queryset of models for the month requested """ qs = super(BaseCalendarMonthView, self).get_queryset() year = self.get_year() month = self.get_month() date_field = self.get_date_field() end_date_field = self.get_end_d...

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def get_dicts_generator(word_min_freq=4, char_min_freq=2, word_ignore_case=False, char_ignore_case=False): """Get word and character dictionaries from sentences. :param word_min_freq: The minimum frequency of a word. :param char_min_fr...

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def make_ordinary_result(result, key, trajectory=None, reload=True): """Turns a given shared data item into a an ordinary one. :param result: Result container with shared data :param key: The name of the shared data :param trajectory: The trajectory, only needed if shared data has no a...

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def integrate_days(self, days=1.0, verbose=True): """Integrates the model forward for a specified number of days. It convertes the given number of days into years and calls :func:`integrate_years`. :param float days: integration time for the model in days ...

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def _any_would_run(func, filenames, *args): """True if a linter function would be called on any of filenames.""" if os.environ.get("_POLYSQUARE_GENERIC_FILE_LINTER_NO_STAMPING", None): return True for filename in filenames: # suppress(E204) stamp_args, stamp_kwargs = _run_lint_on_fi...

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def referenceLengths(self): """ Get the lengths of wanted references. @raise UnknownReference: If a reference id is not present in the SAM/BAM file. @return: A C{dict} of C{str} reference id to C{int} length with a key for each reference id in C{self.referenceIds...

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def _get_localization_env(self, inputs, user_project): """Return a dict with variables for the 'localization' action.""" # Add variables for paths that need to be localized, for example: # INPUT_COUNT: 1 # INPUT_0: MY_INPUT_FILE # INPUT_RECURSIVE_0: 0 # INPUT_SRC_0: gs://mybucket/mypath/myfile ...

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def _format_rules_for_eos(self, rules): """Format list of rules for EOS and sort into ingress/egress rules""" in_rules = [] eg_rules = [] for rule in rules: protocol = rule.get('protocol') cidr = rule.get('remote_ip_prefix', 'any') min_port = rule.get(...

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def calc_adc_params(self): """ Compute appropriate adc_gain and baseline parameters for adc conversion, given the physical signal and the fmts. Returns ------- adc_gains : list List of calculated `adc_gain` values for each channel. baselines : list ...

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def get_cell_length(flow_model): """Get flow direction induced cell length dict. Args: flow_model: Currently, "TauDEM", "ArcGIS", and "Whitebox" are supported. """ assert flow_model.lower() in FlowModelConst.d8_lens return FlowModelConst.d8_lens.get(flow_model.lower()...

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def coroutine(func): """ Initializes coroutine essentially priming it to the yield statement. Used as a decorator over functions that generate coroutines. .. code-block:: python # Basic coroutine producer/consumer pattern from translate import coroutine @coroutine def ...

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def push_file(): """ Push a file to the server """ #NOTE beware that reading post data in flask causes hang until file upload is complete session_token = request.headers['session_token'] repository = request.headers['repository'] #=== current_user = have_authenticated_user(request.environ['REMO...

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def _addKeyToQueue(self, keychr, modFlags=0, globally=False): """Add keypress to queue. Parameters: key character or constant referring to a non-alpha-numeric key (e.g. RETURN or TAB) modifiers global or app specific Returns: None or r...

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def update_router(self, router, body=None): """Updates a router.""" return self.put(self.router_path % (router), body=body)

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def create_or_update_vmextension(call=None, kwargs=None): # pylint: disable=unused-argument ''' .. versionadded:: 2019.2.0 Create or update a VM extension object "inside" of a VM object. required kwargs: .. code-block:: yaml extension_name: myvmextension virtual_machine_name: m...

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def connect_get_namespaced_pod_proxy(self, name, namespace, **kwargs): # noqa: E501 """connect_get_namespaced_pod_proxy # noqa: E501 connect GET requests to proxy of Pod # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please...

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def move(self, d_xyz, inplace=False): """ Translate the whole Space in x, y and z coordinates. :param d_xyz: displacement in x, y(, and z). :type d_xyz: tuple (len=2 or 3) :param inplace: If True, the moved ``pyny.Space`` is copied and added to the cu...

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def _einsum_equation(input_shapes, output_shape): """Turn shapes into an einsum equation. e.g. "ij,jk->ik" Args: input_shapes: a list of Shapes output_shape: a Shape Returns: a string """ ret = [] next_letter = ord("a") dim_to_letter = {} for shape_num, shape in enumerate(input_shapes + ...

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def putrequest(self, method, url, skip_host=0, skip_accept_encoding=0): """Send a request to the server. `method' specifies an HTTP request method, e.g. 'GET'. `url' specifies the object being requested, e.g. '/index.html'. `skip_host' if True does not add automatically a 'Host:' header...

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def get_extra_vehicle_info(self, authentication_info): """Get extra data from the API.""" import requests base_url = "https://secure.ritassist.nl/GenericServiceJSONP.ashx" query = "?f=CheckExtraVehicleInfo" \ "&token={token}" \ "&equipmentId={identifier}"...

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def allow_implicit_stop(gen_func): """ Fix the backwards-incompatible PEP-0479 gotcha/bug https://www.python.org/dev/peps/pep-0479 """ @functools.wraps(gen_func) def wrapper(*args, **kwargs): with warnings.catch_warnings(): for cls in [DeprecationWarning, PendingDeprecationWa...

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def _pdf_find_urls(bytes, mimetype): """ This function finds URLs inside of PDF bytes. """ # Start with only the ASCII bytes. Limit it to 12+ character strings. try: ascii_bytes = b' '.join(re.compile(b'[\x00\x09\x0A\x0D\x20-\x7E]{12,}').findall(bytes)) ascii_bytes = ascii_bytes.replace(b'\...

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def xinfo_help(self): """Retrieve help regarding the ``XINFO`` sub-commands""" fut = self.execute(b'XINFO', b'HELP') return wait_convert(fut, lambda l: b'\n'.join(l))

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