kejian/codesearchnet-python-rebalanced · Datasets at Hugging Face

text stringlengths 75 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 0.18
def _line_by_type(self, line, header, hgroups, htypes, out, want_type, collapse_quals_fn = None): """Parse out key value pairs for line information based on a group of values. """ for index, htype in ((i, t) for i, t in enumerate(htypes) if t == want_type): col ...	[ "def", "_line_by_type", "(", "self", ",", "line", ",", "header", ",", "hgroups", ",", "htypes", ",", "out", ",", "want_type", ",", "collapse_quals_fn", "=", "None", ")", ":", "for", "index", ",", "htype", "in", "(", "(", "i", ",", "t", ")", "for", ...	45.538462	0.014901
def is_sqlatype_text_of_length_at_least( coltype: Union[TypeEngine, VisitableType], min_length: int = 1000) -> bool: """ Is the SQLAlchemy column type a string type that's at least the specified length? """ coltype = _coltype_to_typeengine(coltype) if not isinstance(coltype, sqlt...	[ "def", "is_sqlatype_text_of_length_at_least", "(", "coltype", ":", "Union", "[", "TypeEngine", ",", "VisitableType", "]", ",", "min_length", ":", "int", "=", "1000", ")", "->", "bool", ":", "coltype", "=", "_coltype_to_typeengine", "(", "coltype", ")", "if", "...	38.153846	0.001969
async def handler(self, request): """ Receives HTTP request and negotiates up to a Websocket session """ def task_done(future): self.tasks.remove(future) exception = future.exception() if exception: log.warning( 'Wh...	[ "async", "def", "handler", "(", "self", ",", "request", ")", ":", "def", "task_done", "(", "future", ")", ":", "self", ".", "tasks", ".", "remove", "(", "future", ")", "exception", "=", "future", ".", "exception", "(", ")", "if", "exception", ":", "l...	35.823529	0.001066
def from_hdf(cls, filename): """Load camera model params from a HDF5 file The HDF5 file should contain the following datasets: wc : (2,) float with distortion center lgamma : float distortion parameter readout : float readout value size : (2,) int image s...	[ "def", "from_hdf", "(", "cls", ",", "filename", ")", ":", "import", "h5py", "with", "h5py", ".", "File", "(", "filename", ",", "'r'", ")", "as", "f", ":", "wc", "=", "f", "[", "\"wc\"", "]", ".", "value", "lgamma", "=", "f", "[", "\"lgamma\"", "]...	31.451613	0.00199
def get_collection(self, namespace): """Get a pymongo collection from a namespace.""" database, coll = namespace.split(".", 1) return self.primary_client[database][coll]	[ "def", "get_collection", "(", "self", ",", "namespace", ")", ":", "database", ",", "coll", "=", "namespace", ".", "split", "(", "\".\"", ",", "1", ")", "return", "self", ".", "primary_client", "[", "database", "]", "[", "coll", "]" ]	47.5	0.010363
def long_input(prompt='Multi-line input\n' + \ 'Enter EOF on a blank line to end ' + \ '(ctrl-D in *nix, ctrl-Z in windows)', maxlines = None, maxlength = None): """Get a multi-line string as input""" lines = [] print(prompt) lnum = 1 try: while True: ...	[ "def", "long_input", "(", "prompt", "=", "'Multi-line input\\n'", "+", "'Enter EOF on a blank line to end '", "+", "'(ctrl-D in *nix, ctrl-Z in windows)'", ",", "maxlines", "=", "None", ",", "maxlength", "=", "None", ")", ":", "lines", "=", "[", "]", "print", "(", ...	26.171429	0.015789
def _surfdens(self,R,z,phi=0.,t=0.): """ NAME: _surfdens PURPOSE: evaluate the surface density for this potential INPUT: R - Galactocentric cylindrical radius z - vertical height phi - azimuth t - time OUTPUT: ...	[ "def", "_surfdens", "(", "self", ",", "R", ",", "z", ",", "phi", "=", "0.", ",", "t", "=", "0.", ")", ":", "r", "=", "numpy", ".", "sqrt", "(", "R", "", "2.", "+", "z", "", "2.", ")", "Rma", "=", "numpy", ".", "sqrt", "(", "R", "**", ...	38.064516	0.019008
def get_anlz_factor(freq): """Find the number of periods per year given a frequency. Parameters ---------- freq : str Any frequency str or anchored offset str recognized by Pandas. Returns ------- float Example ------- >>> get_anlz_factor('D') 252.0 ...	[ "def", "get_anlz_factor", "(", "freq", ")", ":", "# 'Q-NOV' would give us (2001, 1); we just want (2000, 1).\r", "try", ":", "base", ",", "mult", "=", "get_freq_code", "(", "freq", ")", "except", "ValueError", ":", "# The above will fail for a bunch of irregular frequencies, ...	26.75	0.00082
def computeOutput(self): """Computes output for both learning and inference. In both cases, the output is the boolean OR of activeState and predictedState at t. Stores currentOutput for checkPrediction.""" # todo: This operation can be sped up by: # 1.) Pre-allocating space for the currentOutput...	[ "def", "computeOutput", "(", "self", ")", ":", "# todo: This operation can be sped up by:", "# 1.) Pre-allocating space for the currentOutput", "# 2.) Making predictedState and activeState of type 'float32' up front", "# 3.) Using logical_or(self.predictedState['t'], self.activeState['t'],",...	41.0625	0.001488
def install(self, paths, maker, **kwargs): """ Install a wheel to the specified paths. If kwarg ``warner`` is specified, it should be a callable, which will be called with two tuples indicating the wheel version of this software and the wheel version in the file, if there is a di...	[ "def", "install", "(", "self", ",", "paths", ",", "maker", ",", "", "", "kwargs", ")", ":", "dry_run", "=", "maker", ".", "dry_run", "warner", "=", "kwargs", ".", "get", "(", "'warner'", ")", "lib_only", "=", "kwargs", ".", "get", "(", "'lib_only'"...	48.627706	0.000523
def fit_angular_distribution(angles, rates, rate_errors, shape='pexp'): """Fits angular distribution of rates. Parameters ---------- rates: numpy array with rates for all PMT combinations angles: numpy array with angles for all PMT combinations shape: which function to fit; ex...	[ "def", "fit_angular_distribution", "(", "angles", ",", "rates", ",", "rate_errors", ",", "shape", "=", "'pexp'", ")", ":", "if", "shape", "==", "'exp'", ":", "fit_function", "=", "exponential", "# p0 = [-0.91871169, 2.72224241, -1.19065965, 1.48054122]", "if", "shap...	30.551724	0.001094
def similar_items(self, itemid, N=10): """ Returns a list of the most similar other items """ if itemid >= self.similarity.shape[0]: return [] return sorted(list(nonzeros(self.similarity, itemid)), key=lambda x: -x[1])[:N]	[ "def", "similar_items", "(", "self", ",", "itemid", ",", "N", "=", "10", ")", ":", "if", "itemid", ">=", "self", ".", "similarity", ".", "shape", "[", "0", "]", ":", "return", "[", "]", "return", "sorted", "(", "list", "(", "nonzeros", "(", "self",...	42.333333	0.011583
def istft(stft_matrix, hop_length=None, win_length=None, window='hann', center=True, dtype=np.float32, length=None): """ Inverse short-time Fourier transform (ISTFT). Converts a complex-valued spectrogram `stft_matrix` to time-series `y` by minimizing the mean squared error between `stft_matr...	[ "def", "istft", "(", "stft_matrix", ",", "hop_length", "=", "None", ",", "win_length", "=", "None", ",", "window", "=", "'hann'", ",", "center", "=", "True", ",", "dtype", "=", "np", ".", "float32", ",", "length", "=", "None", ")", ":", "n_fft", "=",...	34.291391	0.000375
def handle_entityref(self, name): """Process a general entity reference of the form "&name;". Transform to text whenever possible.""" char_code = html_entities.name2codepoint.get(name, None) if char_code is not None: try: self.result += unichr(char_code).encod...	[ "def", "handle_entityref", "(", "self", ",", "name", ")", ":", "char_code", "=", "html_entities", ".", "name2codepoint", ".", "get", "(", "name", ",", "None", ")", "if", "char_code", "is", "not", "None", ":", "try", ":", "self", ".", "result", "+=", "u...	40.555556	0.008043
def write_json_to_file(json_data, filename="metadata"): """ Write all JSON in python dictionary to a new json file. :param dict json_data: JSON data :param str filename: Target filename (defaults to 'metadata.jsonld') :return None: """ logger_jsons.info("enter write_json_to_file") json_d...	[ "def", "write_json_to_file", "(", "json_data", ",", "filename", "=", "\"metadata\"", ")", ":", "logger_jsons", ".", "info", "(", "\"enter write_json_to_file\"", ")", "json_data", "=", "rm_empty_fields", "(", "json_data", ")", "# Use demjson to maintain unicode characters ...	43.6	0.002245
def set_fun_prop(f, k, v): """Set the value of property `k` to be `v` in function `f`. We define properties as annotations added to a function throughout the process of defining a function for verification, e.g. the argument types. This sets function `f`'s property named `k` to be value `v`. ...	[ "def", "set_fun_prop", "(", "f", ",", "k", ",", "v", ")", ":", "if", "not", "hasattr", "(", "f", ",", "_FUN_PROPS", ")", ":", "setattr", "(", "f", ",", "_FUN_PROPS", ",", "{", "}", ")", "if", "not", "isinstance", "(", "getattr", "(", "f", ",", ...	39.8	0.001637
def W(self,value): """ set fixed effect design """ if value is None: value = sp.zeros((self._N, 0)) assert value.shape[0]==self._N, 'Dimension mismatch' self._K = value.shape[1] self._W = value self._notify() self.clear_cache('predict_in_sample','Yres')	[ "def", "W", "(", "self", ",", "value", ")", ":", "if", "value", "is", "None", ":", "value", "=", "sp", ".", "zeros", "(", "(", "self", ".", "_N", ",", "0", ")", ")", "assert", "value", ".", "shape", "[", "0", "]", "==", "self", ".", "_N", "...	38	0.019293
def voc_eval(detpath, annopath, imageset_file, classname, cache_dir, ovthresh=0.5, use_07_metric=False): """ pascal voc evaluation :param detpath: detection results detpath.format(classname) :param annopath: annotations annopath.format(classname) :param imageset_file: text file containing list of im...	[ "def", "voc_eval", "(", "detpath", ",", "annopath", ",", "imageset_file", ",", "classname", ",", "cache_dir", ",", "ovthresh", "=", "0.5", ",", "use_07_metric", "=", "False", ")", ":", "if", "not", "os", ".", "path", ".", "isdir", "(", "cache_dir", ")", ...	36.441441	0.001444
def _do_api_call(self, method, data): """ Convenience method to carry out a standard API call against the Petfinder API. :param basestring method: The API method name to call. :param dict data: Key/value parameters to send to the API method. This varies based on the ...	[ "def", "_do_api_call", "(", "self", ",", "method", ",", "data", ")", ":", "# Developer API keys, auth tokens, and other standard, required args.", "data", ".", "update", "(", "{", "\"key\"", ":", "self", ".", "api_key", ",", "# No API methods currently use this, but we're...	40.261905	0.001732
def blueprint(self): """ :return: blueprint :rtype: dict """ blueprint = dict() for key in self.keys(): blueprint[key] = self.is_attribute_visible(key) return blueprint	[ "def", "blueprint", "(", "self", ")", ":", "blueprint", "=", "dict", "(", ")", "for", "key", "in", "self", ".", "keys", "(", ")", ":", "blueprint", "[", "key", "]", "=", "self", ".", "is_attribute_visible", "(", "key", ")", "return", "blueprint" ]	22.8	0.008439
def invoke( src, event_file='event.json', config_file='config.yaml', profile_name=None, verbose=False, ): """Simulates a call to your function. :param str src: The path to your Lambda ready project (folder must contain a valid config.yaml and handler module (e.g.: service.py). :...	[ "def", "invoke", "(", "src", ",", "event_file", "=", "'event.json'", ",", "config_file", "=", "'config.yaml'", ",", "profile_name", "=", "None", ",", "verbose", "=", "False", ",", ")", ":", "# Load and parse the config file.", "path_to_config_file", "=", "os", "...	32.677966	0.001007
def make_api_method(func): """ Provides a single entry point for modifying all API methods. For now this is limited to allowing the client object to be modified with an `extra_params` keyword arg to each method, that is then used as the params for each web service request. Please note that this...	[ "def", "make_api_method", "(", "func", ")", ":", "@", "functools", ".", "wraps", "(", "func", ")", "def", "wrapper", "(", "", "args", ",", "", "*", "kwargs", ")", ":", "args", "[", "0", "]", ".", "_extra_params", "=", "kwargs", ".", "pop", "(", ...	36.85	0.001323
def images(): """Upload images via REST interface Check if file upload was successful and sanatize user input. TODO: return file URL instead of filename """ if request.method == 'POST': file_upload = request.files['file'] if file_upload: image = dict() imag...	[ "def", "images", "(", ")", ":", "if", "request", ".", "method", "==", "'POST'", ":", "file_upload", "=", "request", ".", "files", "[", "'file'", "]", "if", "file_upload", ":", "image", "=", "dict", "(", ")", "image", "[", "'filename'", "]", "=", "sec...	39.5	0.000951
def namify(root_uri): '''Turns a root uri into a less noisy representation that will probably make sense in most circumstances. Used by Navigator's __repr__, but can be overridden if the Navigator is created with a 'name' parameter.''' root_uri = unidecode.unidecode(decode(unquote(root_uri), 'utf-8')) ...	[ "def", "namify", "(", "root_uri", ")", ":", "root_uri", "=", "unidecode", ".", "unidecode", "(", "decode", "(", "unquote", "(", "root_uri", ")", ",", "'utf-8'", ")", ")", "generic_domains", "=", "set", "(", "[", "'localhost'", ",", "'herokuapp'", ",", "'...	34.71831	0.001183
def export_fem(self, arms=None, format='json', df_kwargs=None): """ Export the project's form to event mapping Parameters ---------- arms : list Limit exported form event mappings to these arm numbers format : (``'json'``), ``'csv'``, ``'xml'`` Re...	[ "def", "export_fem", "(", "self", ",", "arms", "=", "None", ",", "format", "=", "'json'", ",", "df_kwargs", "=", "None", ")", ":", "ret_format", "=", "format", "if", "format", "==", "'df'", ":", "from", "pandas", "import", "read_csv", "ret_format", "=", ...	34.973684	0.001464
def copyfile(src, dst): """Copy data from src to dst""" if _samefile(src, dst): raise Error("`%s` and `%s` are the same file" % (src, dst)) for fn in [src, dst]: try: st = os.stat(fn) except OSError: # File most likely does not exist pass ...	[ "def", "copyfile", "(", "src", ",", "dst", ")", ":", "if", "_samefile", "(", "src", ",", "dst", ")", ":", "raise", "Error", "(", "\"`%s` and `%s` are the same file\"", "%", "(", "src", ",", "dst", ")", ")", "for", "fn", "in", "[", "src", ",", "dst", ...	31.473684	0.001623
def combine_filters(filters, operator=AND): # type: (Iterable[Any], int) -> Optional[Union[LDAPFilter, LDAPCriteria]] """ Combines two LDAP filters, which can be strings or LDAPFilter objects :param filters: Filters to combine :param operator: The operator for combination :return: The combined ...	[ "def", "combine_filters", "(", "filters", ",", "operator", "=", "AND", ")", ":", "# type: (Iterable[Any], int) -> Optional[Union[LDAPFilter, LDAPCriteria]]", "if", "not", "filters", ":", "return", "None", "if", "not", "hasattr", "(", "filters", ",", "\"__iter__\"", ")...	30.404762	0.000759
def tilequeue_rawr_enqueue(cfg, args): """command to take tile expiry path and enqueue for rawr tile generation""" from tilequeue.stats import RawrTileEnqueueStatsHandler from tilequeue.rawr import make_rawr_enqueuer_from_cfg msg_marshall_yaml = cfg.yml.get('message-marshall') assert msg_marshall_y...	[ "def", "tilequeue_rawr_enqueue", "(", "cfg", ",", "args", ")", ":", "from", "tilequeue", ".", "stats", "import", "RawrTileEnqueueStatsHandler", "from", "tilequeue", ".", "rawr", "import", "make_rawr_enqueuer_from_cfg", "msg_marshall_yaml", "=", "cfg", ".", "yml", "....	43.555556	0.001248
def query_all(**kwargs): ''' Qeury recent wiki. ''' kind = kwargs.get('kind', '1') limit = kwargs.get('limit', 50) return TabWiki.select().where(TabWiki.kind == kind).limit(limit)	[ "def", "query_all", "(", "", "", "kwargs", ")", ":", "kind", "=", "kwargs", ".", "get", "(", "'kind'", ",", "'1'", ")", "limit", "=", "kwargs", ".", "get", "(", "'limit'", ",", "50", ")", "return", "TabWiki", ".", "select", "(", ")", ".", "wher...	27.625	0.008772
def record(self, chunk_size = None, dfmt = "f", channels = 1, rate = DEFAULT_SAMPLE_RATE, **kwargs ): """ Records audio from device into a Stream. Parameters ---------- chunk_size : Number of samples per c...	[ "def", "record", "(", "self", ",", "chunk_size", "=", "None", ",", "dfmt", "=", "\"f\"", ",", "channels", "=", "1", ",", "rate", "=", "DEFAULT_SAMPLE_RATE", ",", "", "", "kwargs", ")", ":", "if", "chunk_size", "is", "None", ":", "chunk_size", "=", ...	32.136364	0.012354
def genargs(prog: Optional[str] = None) -> ArgumentParser: """ Create a command line parser :return: parser """ parser = ArgumentParser(prog) parser.add_argument("rdf", help="Input RDF file or SPARQL endpoint if slurper or sparql options") parser.add_argument("shex", help="ShEx specification...	[ "def", "genargs", "(", "prog", ":", "Optional", "[", "str", "]", "=", "None", ")", "->", "ArgumentParser", ":", "parser", "=", "ArgumentParser", "(", "prog", ")", "parser", ".", "add_argument", "(", "\"rdf\"", ",", "help", "=", "\"Input RDF file or SPARQL en...	74.423077	0.008163
def unroll(self, length, inputs, begin_state=None, layout='NTC', merge_outputs=None): """Unroll an RNN cell across time steps. Parameters ---------- length : int Number of steps to unroll. inputs : Symbol, list of Symbol, or None If `inputs` is a single S...	[ "def", "unroll", "(", "self", ",", "length", ",", "inputs", ",", "begin_state", "=", "None", ",", "layout", "=", "'NTC'", ",", "merge_outputs", "=", "None", ")", ":", "self", ".", "reset", "(", ")", "inputs", ",", "_", "=", "_normalize_sequence", "(", ...	38.894737	0.00176
def remove_handler(self, name): """ Remove handler from the logging system if present already. Available handlers are currently: ['console-bw', 'console-color', 'rotating-log'] """ if name in self.handlers: self.log.removeHandler(self.handlers[name])	[ "def", "remove_handler", "(", "self", ",", "name", ")", ":", "if", "name", "in", "self", ".", "handlers", ":", "self", ".", "log", ".", "removeHandler", "(", "self", ".", "handlers", "[", "name", "]", ")" ]	42.285714	0.009934
def clean_old_jobs(): ''' Clean out minions's return data for old jobs. Normally, hset 'ret:<jid>' are saved with a TTL, and will eventually get cleaned by redis.But for jobs with some very late minion return, the corresponding hset's TTL will be refreshed to a too late timestamp, we'll do manu...	[ "def", "clean_old_jobs", "(", ")", ":", "serv", "=", "_get_serv", "(", "ret", "=", "None", ")", "ret_jids", "=", "serv", ".", "keys", "(", "'ret:'", ")", "living_jids", "=", "set", "(", "serv", ".", "keys", "(", "'load:'", ")", ")", "to_remove", "=...	35.9	0.001357
def losses_by_tag(dstore, tag): """ Statistical average losses by tag. For instance call $ oq extract losses_by_tag/occupancy """ dt = [(tag, vstr)] + dstore['oqparam'].loss_dt_list() aids = dstore['assetcol/array'][tag] dset, stats = _get(dstore, 'avg_losses') arr = dset.value tagv...	[ "def", "losses_by_tag", "(", "dstore", ",", "tag", ")", ":", "dt", "=", "[", "(", "tag", ",", "vstr", ")", "]", "+", "dstore", "[", "'oqparam'", "]", ".", "loss_dt_list", "(", ")", "aids", "=", "dstore", "[", "'assetcol/array'", "]", "[", "tag", "]...	37.05	0.001316
def _build_mac_signature_key_information(self, value): """ Build an MACSignatureKeyInformation struct from a dictionary. Args: value (dict): A dictionary containing the key/value pairs for a MACSignatureKeyInformation struct. Returns: MACSignatur...	[ "def", "_build_mac_signature_key_information", "(", "self", ",", "value", ")", ":", "if", "value", "is", "None", ":", "return", "None", "if", "not", "isinstance", "(", "value", ",", "dict", ")", ":", "raise", "TypeError", "(", "\"MAC/signature key information mu...	36.322581	0.00173
def make_V_and_J_mask_mapping(self, genV, genJ): """Constructs the V and J mask mapping dictionaries. Parameters ---------- genV : list List of genomic V information. genJ : list List of genomic J information. """ ...	[ "def", "make_V_and_J_mask_mapping", "(", "self", ",", "genV", ",", "genJ", ")", ":", "#construct mapping between allele/gene names and index for custom V_usage_masks", "V_allele_names", "=", "[", "V", "[", "0", "]", "for", "V", "in", "genV", "]", "V_mask_mapping", "="...	43.564103	0.009211
def rstyle(self, name): """ Remove one style """ try: del self.chart_style[name] except KeyError: self.warning("Style " + name + " is not set") except: self.err("Can not remove style " + name)	[ "def", "rstyle", "(", "self", ",", "name", ")", ":", "try", ":", "del", "self", ".", "chart_style", "[", "name", "]", "except", "KeyError", ":", "self", ".", "warning", "(", "\"Style \"", "+", "name", "+", "\" is not set\"", ")", "except", ":", "self",...	20.4	0.056338
def squeeze(self, trits, offset=0, length=HASH_LENGTH): # type: (MutableSequence[int], Optional[int], Optional[int]) -> None """ Squeeze trits from the sponge. :param trits: Sequence that the squeezed trits will be copied to. Note: this object will be modified! ...	[ "def", "squeeze", "(", "self", ",", "trits", ",", "offset", "=", "0", ",", "length", "=", "HASH_LENGTH", ")", ":", "# type: (MutableSequence[int], Optional[int], Optional[int]) -> None", "# Squeeze is kind of like the opposite of absorb; it copies", "# trits from internal state t...	33.810345	0.001487
def magfit(logfile): '''find best magnetometer offset fit to a log file''' print("Processing log %s" % filename) mlog = mavutil.mavlink_connection(filename, notimestamps=args.notimestamps) data = [] last_t = 0 offsets = Vector3(0,0,0) # now gather all the data while True: m =...	[ "def", "magfit", "(", "logfile", ")", ":", "print", "(", "\"Processing log %s\"", "%", "filename", ")", "mlog", "=", "mavutil", ".", "mavlink_connection", "(", "filename", ",", "notimestamps", "=", "args", ".", "notimestamps", ")", "data", "=", "[", "]", "...	31.530303	0.008854
def transform(geom, to_sref): """Returns a transformed Geometry. Arguments: geom -- any coercible Geometry value or Envelope to_sref -- SpatialReference or EPSG ID as int """ # If we have an envelope, assume it's in the target sref. try: geom = getattr(geom, 'polygon', Envelope(geom...	[ "def", "transform", "(", "geom", ",", "to_sref", ")", ":", "# If we have an envelope, assume it's in the target sref.", "try", ":", "geom", "=", "getattr", "(", "geom", ",", "'polygon'", ",", "Envelope", "(", "geom", ")", ".", "polygon", ")", "except", "(", "T...	31.76	0.001222
def _get_spec(self, index): user_data = self.itemData(index) """ :type: QVariant""" spec = user_data.toPyObject() return {str(key): value for key, value in spec.items()}	[ "def", "_get_spec", "(", "self", ",", "index", ")", ":", "user_data", "=", "self", ".", "itemData", "(", "index", ")", "spec", "=", "user_data", ".", "toPyObject", "(", ")", "return", "{", "str", "(", "key", ")", ":", "value", "for", "key", ",", "v...	39.4	0.00995
def output_eol_literal_marker(self, m): """Pass through rest link.""" marker = ':' if m.group(1) is None else '' return self.renderer.eol_literal_marker(marker)	[ "def", "output_eol_literal_marker", "(", "self", ",", "m", ")", ":", "marker", "=", "':'", "if", "m", ".", "group", "(", "1", ")", "is", "None", "else", "''", "return", "self", ".", "renderer", ".", "eol_literal_marker", "(", "marker", ")" ]	45.25	0.01087
def algorithm_u(ns, m): """ taken from `Stack Overflow <https://codereview.stackexchange.com/questions/1526/finding-all-k-subset-partitions>`_ """ def visit(nv, av): ps = [[] for _ in range(m)] for jv in range(nv): ps[av[jv + 1]].append(ns[jv]) return ps def f(m...	[ "def", "algorithm_u", "(", "ns", ",", "m", ")", ":", "def", "visit", "(", "nv", ",", "av", ")", ":", "ps", "=", "[", "[", "]", "for", "_", "in", "range", "(", "m", ")", "]", "for", "jv", "in", "range", "(", "nv", ")", ":", "ps", "[", "av"...	30.35	0.000798
def SetAttributes(self, urn, attributes, to_delete, add_child_index=True, mutation_pool=None): """Sets the attributes in the data store.""" attributes[AFF4Object.SchemaCls.LAST] = [ rdfvalue.RDFDatetime....	[ "def", "SetAttributes", "(", "self", ",", "urn", ",", "attributes", ",", "to_delete", ",", "add_child_index", "=", "True", ",", "mutation_pool", "=", "None", ")", ":", "attributes", "[", "AFF4Object", ".", "SchemaCls", ".", "LAST", "]", "=", "[", "rdfvalue...	29	0.014514
def _replace(self, **kwds): 'Return a new NamedTuple object replacing specified fields with new values' result = self._make(map(kwds.pop, self._fields, self)) if kwds: raise ValueError('Got unexpected field names: %r' % kwds.keys()) return result	[ "def", "_replace", "(", "self", ",", "", "", "kwds", ")", ":", "result", "=", "self", ".", "_make", "(", "map", "(", "kwds", ".", "pop", ",", "self", ".", "_fields", ",", "self", ")", ")", "if", "kwds", ":", "raise", "ValueError", "(", "'Got un...	37.625	0.016234
def execute(self, method, args, kwargs): """ Execute the given method and stores its result. The result is considered "done" even if the method raises an exception :param method: The method to execute :param args: Method positional arguments :param kwargs: Method keyword...	[ "def", "execute", "(", "self", ",", "method", ",", "args", ",", "kwargs", ")", ":", "# Normalize arguments", "if", "args", "is", "None", ":", "args", "=", "[", "]", "if", "kwargs", "is", "None", ":", "kwargs", "=", "{", "}", "try", ":", "# Call the m...	31.866667	0.00203
def kappa_analysis_cicchetti(kappa): """ Analysis kappa number with Cicchetti benchmark. :param kappa: kappa number :type kappa : float :return: strength of agreement as str """ try: if kappa < 0.4: return "Poor" if kappa >= 0.4 and kappa < 0.59: retu...	[ "def", "kappa_analysis_cicchetti", "(", "kappa", ")", ":", "try", ":", "if", "kappa", "<", "0.4", ":", "return", "\"Poor\"", "if", "kappa", ">=", "0.4", "and", "kappa", "<", "0.59", ":", "return", "\"Fair\"", "if", "kappa", ">=", "0.59", "and", "kappa", ...	26.85	0.001799
def update_translations(self, entries, translated_strings): """Update translations in entries. The order and number of translations should match to get_strings_to_translate() result. :param entries: list of entries to translate :type entries: collections.Iterable[polib.POEntry] \| polib...	[ "def", "update_translations", "(", "self", ",", "entries", ",", "translated_strings", ")", ":", "translations", "=", "iter", "(", "translated_strings", ")", "for", "entry", "in", "entries", ":", "if", "not", "self", ".", "need_translate", "(", "entry", ")", ...	44.971429	0.002488
def create_one(self, commit=True): ''' Create and return one model instance. If commit is ``False`` the instance will not be saved and many to many relations will not be processed. Subclasses that override ``create_one`` can specify arbitrary keyword arguments. They wi...	[ "def", "create_one", "(", "self", ",", "commit", "=", "True", ")", ":", "tries", "=", "self", ".", "tries", "instance", "=", "self", ".", "model", "(", ")", "process", "=", "instance", ".", "_meta", ".", "fields", "while", "process", "and", "tries", ...	40.610169	0.002445
def query_edges_by_pubmed_identifiers(self, pubmed_identifiers: List[str]) -> List[Edge]: """Get all edges annotated to the documents identified by the given PubMed identifiers.""" fi = and_(Citation.type == CITATION_TYPE_PUBMED, Citation.reference.in_(pubmed_identifiers)) return self.session.qu...	[ "def", "query_edges_by_pubmed_identifiers", "(", "self", ",", "pubmed_identifiers", ":", "List", "[", "str", "]", ")", "->", "List", "[", "Edge", "]", ":", "fi", "=", "and_", "(", "Citation", ".", "type", "==", "CITATION_TYPE_PUBMED", ",", "Citation", ".", ...	93.25	0.015957
def node_display(root, expandattrs=False, expandvals=False, output=sys.stdout): """ Write an indented representation of the Node object on the output; this is intended for testing/debugging purposes. :param root: a Node object :param bool expandattrs: if True, the values of the attributes are ...	[ "def", "node_display", "(", "root", ",", "expandattrs", "=", "False", ",", "expandvals", "=", "False", ",", "output", "=", "sys", ".", "stdout", ")", ":", "_display", "(", "root", ",", "''", ",", "expandattrs", ",", "expandvals", ",", "output", ")" ]	48.692308	0.00155
def min_interp(interp_object): """ Find the global minimum of a function represented as an interpolation object. """ try: return interp_object.x[interp_object(interp_object.x).argmin()] except Exception as e: s = "Cannot find minimum of the interpolation object" + str(interp_object.x...	[ "def", "min_interp", "(", "interp_object", ")", ":", "try", ":", "return", "interp_object", ".", "x", "[", "interp_object", "(", "interp_object", ".", "x", ")", ".", "argmin", "(", ")", "]", "except", "Exception", "as", "e", ":", "s", "=", "\"Cannot find...	42.8	0.011442
def diff(name, *kwargs): ''' Gets the difference between the candidate and the current configuration. .. code-block:: yaml get the diff: junos: - diff - id: 10 Parameters: Optional id: The rollback id value [0-49]. (...	[ "def", "diff", "(", "name", ",", "", "", "kwargs", ")", ":", "ret", "=", "{", "'name'", ":", "name", ",", "'changes'", ":", "{", "}", ",", "'result'", ":", "True", ",", "'comment'", ":", "''", "}", "ret", "[", "'changes'", "]", "=", "__salt__",...	24.315789	0.002083
def sersic_constant(self): """ A parameter derived from Sersic index which ensures that effective radius contains 50% of the profile's total integrated light. """ return (2 * self.sersic_index) - (1. / 3.) + (4. / (405. * self.sersic_index)) + ( 46. / (25515. * self.sersi...	[ "def", "sersic_constant", "(", "self", ")", ":", "return", "(", "2", "", "self", ".", "sersic_index", ")", "-", "(", "1.", "/", "3.", ")", "+", "(", "4.", "/", "(", "405.", "", "self", ".", "sersic_index", ")", ")", "+", "(", "46.", "/", "(",...	64.857143	0.01087
def mkdir(self, foldername): 'Create a new subfolder and return the new JFSFolder' #url = '%s?mkDir=true' % posixpath.join(self.path, foldername) url = posixpath.join(self.path, foldername) params = {'mkDir':'true'} r = self.jfs.post(url, params) self.sync() retur...	[ "def", "mkdir", "(", "self", ",", "foldername", ")", ":", "#url = '%s?mkDir=true' % posixpath.join(self.path, foldername)", "url", "=", "posixpath", ".", "join", "(", "self", ".", "path", ",", "foldername", ")", "params", "=", "{", "'mkDir'", ":", "'true'", "}",...	39.5	0.012384
async def open_session(self, request: BaseRequestWebsocket) -> Session: """Open and return a Session using the request.""" return await ensure_coroutine(self.session_interface.open_session)(self, request)	[ "async", "def", "open_session", "(", "self", ",", "request", ":", "BaseRequestWebsocket", ")", "->", "Session", ":", "return", "await", "ensure_coroutine", "(", "self", ".", "session_interface", ".", "open_session", ")", "(", "self", ",", "request", ")" ]	72.666667	0.013636
def _read_record(self, f, blk, chans): """Read raw data from a single EDF channel. Parameters ---------- i_chan : int index of the channel to read begsam : int index of the first sample endsam : int index of the last sample Re...	[ "def", "_read_record", "(", "self", ",", "f", ",", "blk", ",", "chans", ")", ":", "dat_in_rec", "=", "empty", "(", "(", "len", "(", "chans", ")", ",", "self", ".", "max_smp", ")", ")", "i_ch_in_dat", "=", "0", "for", "i_ch", "in", "chans", ":", "...	27.548387	0.002262
def CmykToCmy(c, m, y, k): '''Convert the color from CMYK coordinates to CMY. Parameters: :c: The Cyan component value [0...1] :m: The Magenta component value [0...1] :y: The Yellow component value [0...1] :k: The Black component value [0...1] Return...	[ "def", "CmykToCmy", "(", "c", ",", "m", ",", "y", ",", "k", ")", ":", "mk", "=", "1", "-", "k", "return", "(", "(", "c", "", "mk", "+", "k", ")", ",", "(", "m", "", "mk", "+", "k", ")", ",", "(", "y", "*", "mk", "+", "k", ")", ")"...	21.88	0.001751
def get_Zstar(x_segment, y_segment, x_int, y_int, slope, n): """ input: x_segment, y_segment, x_int, y_int, slope, n output: Z* (Arai plot zigzag parameter (alternate)) """ total = 0 first_time = True for num, x in enumerate(x_segment): b_wiggle = get_b_wiggle(x, y_segment[num], y_in...	[ "def", "get_Zstar", "(", "x_segment", ",", "y_segment", ",", "x_int", ",", "y_int", ",", "slope", ",", "n", ")", ":", "total", "=", "0", "first_time", "=", "True", "for", "num", ",", "x", "in", "enumerate", "(", "x_segment", ")", ":", "b_wiggle", "="...	35.928571	0.00969
def linspace(self,dim,args,*kwargs): """ Creates a range of values for a specific dimension that go from its minimum to its maximum either in certain steps (resolution != None) or a fixed number of bins (bins != None). The output can be converted into a different unit (eg...	[ "def", "linspace", "(", "self", ",", "dim", ",", "", "args", ",", "", "", "kwargs", ")", ":", "return", "self", ".", "spike_times", ".", "get_label", "(", "dim", ")", ".", "linspace", "(", "", "args", ",", "", "", "kwargs", ")" ]	51.272727	0.013925
def readsleb128(buff): """ Read a signed LEB128 at the current position of the buffer. :param buff: a file like object :return: decoded sLEB128 """ result = 0 shift = 0 for x in range(0, 5): cur = get_byte(buff) result \|= (cur & 0x7f) << shift shift += 7 ...	[ "def", "readsleb128", "(", "buff", ")", ":", "result", "=", "0", "shift", "=", "0", "for", "x", "in", "range", "(", "0", ",", "5", ")", ":", "cur", "=", "get_byte", "(", "buff", ")", "result", "\|=", "(", "cur", "&", "0x7f", ")", "<<", "shift", ...	23.833333	0.001681
def _read_layers(self, layers, image_id): """ Reads the JSON metadata for specified layer / image id """ for layer in self.docker.history(image_id): layers.append(layer['Id'])	[ "def", "_read_layers", "(", "self", ",", "layers", ",", "image_id", ")", ":", "for", "layer", "in", "self", ".", "docker", ".", "history", "(", "image_id", ")", ":", "layers", ".", "append", "(", "layer", "[", "'Id'", "]", ")" ]	40	0.009804
def Lewis(D=None, alpha=None, Cp=None, k=None, rho=None): r'''Calculates Lewis number or `Le` for a fluid with the given parameters. .. math:: Le = \frac{k}{\rho C_p D} = \frac{\alpha}{D} Inputs can be either of the following sets: * Diffusivity and Thermal diffusivity * Diffusivity, heat...	[ "def", "Lewis", "(", "D", "=", "None", ",", "alpha", "=", "None", ",", "Cp", "=", "None", ",", "k", "=", "None", ",", "rho", "=", "None", ")", ":", "if", "k", "and", "Cp", "and", "rho", ":", "alpha", "=", "k", "/", "(", "rho", "*", "Cp", ...	27.9	0.000577
def optimal_partitions(sizes, counts, num_part): """Compute the optimal partitions given a distribution of set sizes. Args: sizes (numpy.array): The complete domain of set sizes in ascending order. counts (numpy.array): The frequencies of all set sizes in the same order ...	[ "def", "optimal_partitions", "(", "sizes", ",", "counts", ",", "num_part", ")", ":", "if", "num_part", "<", "2", ":", "return", "[", "(", "sizes", "[", "0", "]", ",", "sizes", "[", "-", "1", "]", ")", "]", "if", "num_part", ">=", "len", "(", "siz...	38.391304	0.001105
def register_checker(self, checker): """register a new checker checker is an object implementing IRawChecker or / and IAstroidChecker """ assert checker.priority <= 0, "checker priority can't be >= 0" self._checkers[checker.name].append(checker) for r_id, r_title, r_cb i...	[ "def", "register_checker", "(", "self", ",", "checker", ")", ":", "assert", "checker", ".", "priority", "<=", "0", ",", "\"checker priority can't be >= 0\"", "self", ".", "_checkers", "[", "checker", ".", "name", "]", ".", "append", "(", "checker", ")", "for...	43.611111	0.002494
def ravd(result, reference): """ Relative absolute volume difference. Compute the relative absolute volume difference between the (joined) binary objects in the two images. Parameters ---------- result : array_like Input data containing objects. Can be any type but will be ...	[ "def", "ravd", "(", "result", ",", "reference", ")", ":", "result", "=", "numpy", ".", "atleast_1d", "(", "result", ".", "astype", "(", "numpy", ".", "bool", ")", ")", "reference", "=", "numpy", ".", "atleast_1d", "(", "reference", ".", "astype", "(", ...	28.465116	0.010265
def _get_price(self, data, market, field): """ Given the data (in json format), returns the field for a given market. """ for m in data: if m["symbol"] == market: return m[field]	[ "def", "_get_price", "(", "self", ",", "data", ",", "market", ",", "field", ")", ":", "for", "m", "in", "data", ":", "if", "m", "[", "\"symbol\"", "]", "==", "market", ":", "return", "m", "[", "field", "]" ]	29.875	0.00813
def length(self): """Length in Feet (f)""" length = self.parse['attributes'].get('Shape_Length') if length: return round(float(length))	[ "def", "length", "(", "self", ")", ":", "length", "=", "self", ".", "parse", "[", "'attributes'", "]", ".", "get", "(", "'Shape_Length'", ")", "if", "length", ":", "return", "round", "(", "float", "(", "length", ")", ")" ]	33.4	0.011696
def download_mail_attachments(self, name, local_output_directory, mail_folder='INBOX', check_regex=False, latest_only=False, ...	[ "def", "download_mail_attachments", "(", "self", ",", "name", ",", "local_output_directory", ",", "mail_folder", "=", "'INBOX'", ",", "check_regex", "=", "False", ",", "latest_only", "=", "False", ",", "not_found_mode", "=", "'raise'", ")", ":", "mail_attachments"...	52.815789	0.008317
def list(self, limit=None, page_size=None): """ Lists KeyInstance records from the API as a list. Unlike stream(), this operation is eager and will load `limit` records into memory before returning. :param int limit: Upper limit for the number of records to return. list() guaran...	[ "def", "list", "(", "self", ",", "limit", "=", "None", ",", "page_size", "=", "None", ")", ":", "return", "list", "(", "self", ".", "stream", "(", "limit", "=", "limit", ",", "page_size", "=", "page_size", ",", ")", ")" ]	56.705882	0.008163
def run_as_admin(command, cwd=None, environ=None): """ Runs a command as an admin in the specified cwd and environ. On Windows, this creates a temporary directory where this information is stored temporarily so that the new process can launch the proper subprocess. """ if isinstance(command, str): ...	[ "def", "run_as_admin", "(", "command", ",", "cwd", "=", "None", ",", "environ", "=", "None", ")", ":", "if", "isinstance", "(", "command", ",", "str", ")", ":", "command", "=", "shlex", ".", "split", "(", "command", ")", "if", "os", ".", "name", "=...	29.8	0.009756
def user_verify_password(user_id=None, name=None, password=None, profile=None, *connection_args): ''' Verify a user's password CLI Examples: .. code-block:: bash salt '' keystone.user_verify_password name=test password=foobar salt '*' keystone.user_verify_pa...	[ "def", "user_verify_password", "(", "user_id", "=", "None", ",", "name", "=", "None", ",", "password", "=", "None", ",", "profile", "=", "None", ",", "", "", "connection_args", ")", ":", "kstone", "=", "auth", "(", "profile", ",", "", "", "connecti...	35.021739	0.001208
def selection(self): """Returns items in selection as a QItemSelection object""" sel = QtGui.QItemSelection() for index in self.selectedIndexes(): sel.select(index, index) return sel	[ "def", "selection", "(", "self", ")", ":", "sel", "=", "QtGui", ".", "QItemSelection", "(", ")", "for", "index", "in", "self", ".", "selectedIndexes", "(", ")", ":", "sel", ".", "select", "(", "index", ",", "index", ")", "return", "sel" ]	36.833333	0.00885
def clipTo(self, bsp): """ Remove all polygons in this BSP tree that are inside the other BSP tree `bsp`. """ self.polygons = bsp.clipPolygons(self.polygons) if self.front: self.front.clipTo(bsp) if self.back: self.back.clipTo(bsp)	[ "def", "clipTo", "(", "self", ",", "bsp", ")", ":", "self", ".", "polygons", "=", "bsp", ".", "clipPolygons", "(", "self", ".", "polygons", ")", "if", "self", ".", "front", ":", "self", ".", "front", ".", "clipTo", "(", "bsp", ")", "if", "self", ...	30.5	0.015924
def notify(cls, user_or_email_, object_id=None, **filters): """Start notifying the given user or email address when this event occurs and meets the criteria given in ``filters``. Return the created (or the existing matching) Watch so you can call :meth:`~tidings.models.Watch.activate()`...	[ "def", "notify", "(", "cls", ",", "user_or_email_", ",", "object_id", "=", "None", ",", "", "", "filters", ")", ":", "# A test-for-existence-then-create race condition exists here, but it", "# doesn't matter: de-duplication on fire() and deletion of all matches", "# on stop_not...	46.140625	0.000663
def selected(self): """Action to be executed when a valid item has been selected""" EditableComboBox.selected(self) self.open_dir.emit(self.currentText())	[ "def", "selected", "(", "self", ")", ":", "EditableComboBox", ".", "selected", "(", "self", ")", "self", ".", "open_dir", ".", "emit", "(", "self", ".", "currentText", "(", ")", ")" ]	44.5	0.01105
def namedb_get_all_namespace_ids( cur ): """ Get a list of all READY namespace IDs. """ query = "SELECT namespace_id FROM namespaces WHERE op = ?;" args = (NAMESPACE_READY,) namespace_rows = namedb_query_execute( cur, query, args ) ret = [] for namespace_row in namespace_rows: ...	[ "def", "namedb_get_all_namespace_ids", "(", "cur", ")", ":", "query", "=", "\"SELECT namespace_id FROM namespaces WHERE op = ?;\"", "args", "=", "(", "NAMESPACE_READY", ",", ")", "namespace_rows", "=", "namedb_query_execute", "(", "cur", ",", "query", ",", "args", ")"...	26.142857	0.01847
def newick_replace_otuids(tree, biomf): """ Replace the OTU ids in the Newick phylogenetic tree format with truncated OTU names """ for val, id_, md in biomf.iter(axis="observation"): otu_loc = find_otu(id_, tree) if otu_loc is not None: tree = tree[:otu_loc] + \ ...	[ "def", "newick_replace_otuids", "(", "tree", ",", "biomf", ")", ":", "for", "val", ",", "id_", ",", "md", "in", "biomf", ".", "iter", "(", "axis", "=", "\"observation\"", ")", ":", "otu_loc", "=", "find_otu", "(", "id_", ",", "tree", ")", "if", "otu_...	34.333333	0.002364
def _datetime_to_rfc3339(value, ignore_zone=True): """Convert a timestamp to a string. :type value: :class:`datetime.datetime` :param value: The datetime object to be converted to a string. :type ignore_zone: bool :param ignore_zone: If True, then the timezone (if any) of the datetime ...	[ "def", "_datetime_to_rfc3339", "(", "value", ",", "ignore_zone", "=", "True", ")", ":", "if", "not", "ignore_zone", "and", "value", ".", "tzinfo", "is", "not", "None", ":", "# Convert to UTC and remove the time zone info.", "value", "=", "value", ".", "replace", ...	35.111111	0.001541
def list_to_dict(lst, key=None, remove_key=True): """ convert a list of dicts to a dict with root keys Parameters ---------- lst : list[dict] key : str or None a key contained by all of the dicts if None use index number string remove_key : bool remove key from dicts in ...	[ "def", "list_to_dict", "(", "lst", ",", "key", "=", "None", ",", "remove_key", "=", "True", ")", ":", "assert", "all", "(", "[", "is_dict_like", "(", "d", ")", "for", "d", "in", "lst", "]", ")", "if", "key", "is", "not", "None", ":", "assert", "a...	25.1	0.000959
def snip(tag="",start=-2,write_date=True): """ This function records a previously execute notebook cell into a file (default: ipython_history.py) a tag can be added to sort the cell `start` defines which cell in the history to record. Default is -2, ie. the one executed previously to the ...	[ "def", "snip", "(", "tag", "=", "\"\"", ",", "start", "=", "-", "2", ",", "write_date", "=", "True", ")", ":", "import", "IPython", "i", "=", "IPython", ".", "get_ipython", "(", ")", "last_history", "=", "i", ".", "history_manager", ".", "get_range", ...	46.678571	0.011244
def values(self): """ Iterate values. """ for key, value in self.__data__.items(): if key not in (META, KEY): yield DictTree(__data__=value)	[ "def", "values", "(", "self", ")", ":", "for", "key", ",", "value", "in", "self", ".", "__data__", ".", "items", "(", ")", ":", "if", "key", "not", "in", "(", "META", ",", "KEY", ")", ":", "yield", "DictTree", "(", "__data__", "=", "value", ")" ]	27.714286	0.01
def get_if_list(): """Returns a list containing all network interfaces.""" # Get ifconfig output try: fd = os.popen("%s -a" % conf.prog.ifconfig) except OSError as msg: raise Scapy_Exception("Failed to execute ifconfig: (%s)" % msg) # Get interfaces interfaces = [line[:line.fin...	[ "def", "get_if_list", "(", ")", ":", "# Get ifconfig output", "try", ":", "fd", "=", "os", ".", "popen", "(", "\"%s -a\"", "%", "conf", ".", "prog", ".", "ifconfig", ")", "except", "OSError", "as", "msg", ":", "raise", "Scapy_Exception", "(", "\"Failed to ...	31.692308	0.002358
def get_param_descriptor(mcs,param_name): """ Goes up the class hierarchy (starting from the current class) looking for a Parameter class attribute param_name. As soon as one is found as a class attribute, that Parameter is returned along with the class in which it is declared. ...	[ "def", "get_param_descriptor", "(", "mcs", ",", "param_name", ")", ":", "classes", "=", "classlist", "(", "mcs", ")", "for", "c", "in", "classes", "[", ":", ":", "-", "1", "]", ":", "attribute", "=", "c", ".", "__dict__", ".", "get", "(", "param_name...	41.692308	0.01083
def get_pipeline_path(pipeline_name, working_directory): """Look for the pipeline in the various places it could be. First checks the cwd. Then checks pypyr/pipelines dir. Args: pipeline_name: string. Name of pipeline to find working_directory: string. Path in which to look for pipeline_na...	[ "def", "get_pipeline_path", "(", "pipeline_name", ",", "working_directory", ")", ":", "logger", ".", "debug", "(", "\"starting\"", ")", "# look for name.yaml in the pipelines/ sub-directory", "logger", ".", "debug", "(", "f\"current directory is {working_directory}\"", ")", ...	36.235294	0.000527
def latex(self): """Gives a latex representation of the assessment.""" output = self.latex_preamble output += self._repr_latex_() output += self.latex_post return output	[ "def", "latex", "(", "self", ")", ":", "output", "=", "self", ".", "latex_preamble", "output", "+=", "self", ".", "_repr_latex_", "(", ")", "output", "+=", "self", ".", "latex_post", "return", "output" ]	34	0.009569
def from_csv(filename_or_buffer, copy_index=True, kwargs): """Shortcut to read a csv file using pandas and convert to a DataFrame directly. :rtype: DataFrame """ import pandas as pd return from_pandas(pd.read_csv(filename_or_buffer, kwargs), copy_index=copy_index)	[ "def", "from_csv", "(", "filename_or_buffer", ",", "copy_index", "=", "True", ",", "", "", "kwargs", ")", ":", "import", "pandas", "as", "pd", "return", "from_pandas", "(", "pd", ".", "read_csv", "(", "filename_or_buffer", ",", "", "", "kwargs", ")", ...	40.428571	0.010381
def welch(timeseries, segmentlength, noverlap=None, scheme=None, **kwargs): """Calculate a PSD using Welch's method with a mean average Parameters ---------- timeseries : `~gwpy.timeseries.TimeSeries` input `TimeSeries` data. segmentlength : `int` number of samples in single averag...	[ "def", "welch", "(", "timeseries", ",", "segmentlength", ",", "noverlap", "=", "None", ",", "scheme", "=", "None", ",", "", "", "kwargs", ")", ":", "from", "pycbc", ".", "psd", "import", "welch", "as", "pycbc_welch", "# default to 'standard' welch", "kwarg...	29.117647	0.000651
def step_rhythmic(self, tau=1.0, error_coupling=1.0): """Generate a single step of x for rhythmic closed loop movements. Decaying from 1 to 0 according to dx = -ax*x. tau float: gain on execution time increase tau to make the system execute faster er...	[ "def", "step_rhythmic", "(", "self", ",", "tau", "=", "1.0", ",", "error_coupling", "=", "1.0", ")", ":", "self", ".", "x", "+=", "(", "1", "", "error_coupling", "", "tau", ")", "*", "self", ".", "dt", "return", "self", ".", "x" ]	40.727273	0.010917
def build_uda_config_overrides(targets): """ Returns a list of UDAs defined by given targets For all targets in `targets`, build a dictionary of configuration overrides representing the UDAs defined by the passed-in services (`targets`). Given a hypothetical situation in which you have two services, t...	[ "def", "build_uda_config_overrides", "(", "targets", ")", ":", "from", "bugwarrior", ".", "services", "import", "get_service", "targets_udas", "=", "{", "}", "for", "target", "in", "targets", ":", "targets_udas", ".", "update", "(", "get_service", "(", "target",...	32.307692	0.00077
def poll( self, transaction_hash: bytes, ): """ Wait until the `transaction_hash` is applied or rejected. Args: transaction_hash: Transaction hash that we are waiting for. """ if len(transaction_hash) != 32: raise ValueError( ...	[ "def", "poll", "(", "self", ",", "transaction_hash", ":", "bytes", ",", ")", ":", "if", "len", "(", "transaction_hash", ")", "!=", "32", ":", "raise", "ValueError", "(", "'transaction_hash must be a 32 byte hash'", ",", ")", "transaction_hash", "=", "encode_hex"...	35.895833	0.00226
def _strategy(codes, context): """ Convert SRE regex parse tree to strategy that generates strings matching that regex represented by that parse tree. `codes` is either a list of SRE regex elements representations or a particular element representation. Each element is a tuple of element code (as s...	[ "def", "_strategy", "(", "codes", ",", "context", ")", ":", "if", "not", "isinstance", "(", "codes", ",", "tuple", ")", ":", "# List of codes", "strategies", "=", "[", "]", "i", "=", "0", "while", "i", "<", "len", "(", "codes", ")", ":", "if", "cod...	36.225	0.001847
def readList(self): """ Read a C{list} from the data stream. """ obj = [] self.context.addObject(obj) l = self.stream.read_ulong() for i in xrange(l): obj.append(self.readElement()) return obj	[ "def", "readList", "(", "self", ")", ":", "obj", "=", "[", "]", "self", ".", "context", ".", "addObject", "(", "obj", ")", "l", "=", "self", ".", "stream", ".", "read_ulong", "(", ")", "for", "i", "in", "xrange", "(", "l", ")", ":", "obj", ".",...	21.583333	0.011111
def load_umls(): """UMLs Dataset. The data consists of information about a 135 Graph and the relations between their nodes given as a DataFrame with three columns, source, target and type, indicating which nodes are related and with which type of link. The target is a 1d numpy binary integer array ...	[ "def", "load_umls", "(", ")", ":", "dataset_path", "=", "_load", "(", "'umls'", ")", "X", "=", "_load_csv", "(", "dataset_path", ",", "'data'", ")", "y", "=", "X", ".", "pop", "(", "'label'", ")", ".", "values", "graph", "=", "nx", ".", "Graph", "(...	37.470588	0.009188
def make_flatten(decl_or_decls): """ Converts tree representation of declarations to flatten one. :param decl_or_decls: reference to list of declaration's or single declaration :type decl_or_decls: :class:`declaration_t` or [ :class:`declaration_t` ] :rtype: [ all internal declarations ] ...	[ "def", "make_flatten", "(", "decl_or_decls", ")", ":", "def", "proceed_single", "(", "decl", ")", ":", "answer", "=", "[", "decl", "]", "if", "not", "isinstance", "(", "decl", ",", "scopedef_t", ")", ":", "return", "answer", "for", "elem", "in", "decl", ...	28.16129	0.001107
def excess_drawdown_idx(self, benchmark, method="caer"): """Excess drawdown index; TSeries of excess drawdowns. There are several ways of computing this metric. For highly volatile returns, the `method` specified will have a non-negligible effect on the result. Parameters ...	[ "def", "excess_drawdown_idx", "(", "self", ",", "benchmark", ",", "method", "=", "\"caer\"", ")", ":", "# TODO: plot these (compared) in docs.", "if", "isinstance", "(", "method", ",", "(", "int", ",", "float", ")", ")", ":", "method", "=", "[", "\"caer\"", ...	35.758621	0.000939
def _migrate_subresources(parent, migrations): """ Migrate a resource's subresources :param parent: the parent perch.Document instance :param migrations: the migrations for a resource """ for subresource, resource_migrations in migrations.items(): parent = _migrate_subresource( ...	[ "def", "_migrate_subresources", "(", "parent", ",", "migrations", ")", ":", "for", "subresource", ",", "resource_migrations", "in", "migrations", ".", "items", "(", ")", ":", "parent", "=", "_migrate_subresource", "(", "subresource", ",", "parent", ",", "resourc...	26.866667	0.002398
def backward_word_extend_selection(self, e): # u"""Move back to the start of the current or previous word. Words are composed of letters and digits.""" self.l_buffer.backward_word_extend_selection(self.argument_reset) self.finalize()	[ "def", "backward_word_extend_selection", "(", "self", ",", "e", ")", ":", "# \r", "self", ".", "l_buffer", ".", "backward_word_extend_selection", "(", "self", ".", "argument_reset", ")", "self", ".", "finalize", "(", ")" ]	53.2	0.014815
def get_bucket_name(self): '''get or return the s3 bucket name. If not yet defined via an environment variable or setting, we create a name with the pattern. sregistry-<robotnamer>-<1234> You can use the following environment variables to determine interacti...	[ "def", "get_bucket_name", "(", "self", ")", ":", "# Get bucket name", "bucket_name", "=", "'sregistry-%s'", "%", "RobotNamer", "(", ")", ".", "generate", "(", ")", "self", ".", "bucket_name", "=", "self", ".", "_get_and_update_setting", "(", "'SREGISTRY_S3_BUCKET'...	45.2	0.008671

def _line_by_type(self, line, header, hgroups, htypes, out, want_type, collapse_quals_fn = None): """Parse out key value pairs for line information based on a group of values. """ for index, htype in ((i, t) for i, t in enumerate(htypes) if t == want_type): col ...

[ "def", "_line_by_type", "(", "self", ",", "line", ",", "header", ",", "hgroups", ",", "htypes", ",", "out", ",", "want_type", ",", "collapse_quals_fn", "=", "None", ")", ":", "for", "index", ",", "htype", "in", "(", "(", "i", ",", "t", ")", "for", ...

45.538462

0.014901

def is_sqlatype_text_of_length_at_least( coltype: Union[TypeEngine, VisitableType], min_length: int = 1000) -> bool: """ Is the SQLAlchemy column type a string type that's at least the specified length? """ coltype = _coltype_to_typeengine(coltype) if not isinstance(coltype, sqlt...

[ "def", "is_sqlatype_text_of_length_at_least", "(", "coltype", ":", "Union", "[", "TypeEngine", ",", "VisitableType", "]", ",", "min_length", ":", "int", "=", "1000", ")", "->", "bool", ":", "coltype", "=", "_coltype_to_typeengine", "(", "coltype", ")", "if", "...

38.153846

0.001969

async def handler(self, request): """ Receives HTTP request and negotiates up to a Websocket session """ def task_done(future): self.tasks.remove(future) exception = future.exception() if exception: log.warning( 'Wh...

[ "async", "def", "handler", "(", "self", ",", "request", ")", ":", "def", "task_done", "(", "future", ")", ":", "self", ".", "tasks", ".", "remove", "(", "future", ")", "exception", "=", "future", ".", "exception", "(", ")", "if", "exception", ":", "l...

35.823529

0.001066

def from_hdf(cls, filename): """Load camera model params from a HDF5 file The HDF5 file should contain the following datasets: wc : (2,) float with distortion center lgamma : float distortion parameter readout : float readout value size : (2,) int image s...

[ "def", "from_hdf", "(", "cls", ",", "filename", ")", ":", "import", "h5py", "with", "h5py", ".", "File", "(", "filename", ",", "'r'", ")", "as", "f", ":", "wc", "=", "f", "[", "\"wc\"", "]", ".", "value", "lgamma", "=", "f", "[", "\"lgamma\"", "]...

31.451613

0.00199

def get_collection(self, namespace): """Get a pymongo collection from a namespace.""" database, coll = namespace.split(".", 1) return self.primary_client[database][coll]

[ "def", "get_collection", "(", "self", ",", "namespace", ")", ":", "database", ",", "coll", "=", "namespace", ".", "split", "(", "\".\"", ",", "1", ")", "return", "self", ".", "primary_client", "[", "database", "]", "[", "coll", "]" ]

47.5

0.010363

def long_input(prompt='Multi-line input\n' + \ 'Enter EOF on a blank line to end ' + \ '(ctrl-D in *nix, ctrl-Z in windows)', maxlines = None, maxlength = None): """Get a multi-line string as input""" lines = [] print(prompt) lnum = 1 try: while True: ...

[ "def", "long_input", "(", "prompt", "=", "'Multi-line input\\n'", "+", "'Enter EOF on a blank line to end '", "+", "'(ctrl-D in *nix, ctrl-Z in windows)'", ",", "maxlines", "=", "None", ",", "maxlength", "=", "None", ")", ":", "lines", "=", "[", "]", "print", "(", ...

26.171429

0.015789

def _surfdens(self,R,z,phi=0.,t=0.): """ NAME: _surfdens PURPOSE: evaluate the surface density for this potential INPUT: R - Galactocentric cylindrical radius z - vertical height phi - azimuth t - time OUTPUT: ...

[ "def", "_surfdens", "(", "self", ",", "R", ",", "z", ",", "phi", "=", "0.", ",", "t", "=", "0.", ")", ":", "r", "=", "numpy", ".", "sqrt", "(", "R", "**", "2.", "+", "z", "**", "2.", ")", "Rma", "=", "numpy", ".", "sqrt", "(", "R", "**", ...

38.064516

0.019008

def get_anlz_factor(freq): """Find the number of periods per year given a frequency. Parameters ---------- freq : str Any frequency str or anchored offset str recognized by Pandas. Returns ------- float Example ------- >>> get_anlz_factor('D') 252.0 ...

[ "def", "get_anlz_factor", "(", "freq", ")", ":", "# 'Q-NOV' would give us (2001, 1); we just want (2000, 1).\r", "try", ":", "base", ",", "mult", "=", "get_freq_code", "(", "freq", ")", "except", "ValueError", ":", "# The above will fail for a bunch of irregular frequencies, ...

26.75

0.00082

def computeOutput(self): """Computes output for both learning and inference. In both cases, the output is the boolean OR of activeState and predictedState at t. Stores currentOutput for checkPrediction.""" # todo: This operation can be sped up by: # 1.) Pre-allocating space for the currentOutput...

[ "def", "computeOutput", "(", "self", ")", ":", "# todo: This operation can be sped up by:", "# 1.) Pre-allocating space for the currentOutput", "# 2.) Making predictedState and activeState of type 'float32' up front", "# 3.) Using logical_or(self.predictedState['t'], self.activeState['t'],",...

41.0625

0.001488

def install(self, paths, maker, **kwargs): """ Install a wheel to the specified paths. If kwarg ``warner`` is specified, it should be a callable, which will be called with two tuples indicating the wheel version of this software and the wheel version in the file, if there is a di...

[ "def", "install", "(", "self", ",", "paths", ",", "maker", ",", "*", "*", "kwargs", ")", ":", "dry_run", "=", "maker", ".", "dry_run", "warner", "=", "kwargs", ".", "get", "(", "'warner'", ")", "lib_only", "=", "kwargs", ".", "get", "(", "'lib_only'"...

48.627706

0.000523

def fit_angular_distribution(angles, rates, rate_errors, shape='pexp'): """Fits angular distribution of rates. Parameters ---------- rates: numpy array with rates for all PMT combinations angles: numpy array with angles for all PMT combinations shape: which function to fit; ex...

[ "def", "fit_angular_distribution", "(", "angles", ",", "rates", ",", "rate_errors", ",", "shape", "=", "'pexp'", ")", ":", "if", "shape", "==", "'exp'", ":", "fit_function", "=", "exponential", "# p0 = [-0.91871169, 2.72224241, -1.19065965, 1.48054122]", "if", "shap...

30.551724

0.001094

def similar_items(self, itemid, N=10): """ Returns a list of the most similar other items """ if itemid >= self.similarity.shape[0]: return [] return sorted(list(nonzeros(self.similarity, itemid)), key=lambda x: -x[1])[:N]

[ "def", "similar_items", "(", "self", ",", "itemid", ",", "N", "=", "10", ")", ":", "if", "itemid", ">=", "self", ".", "similarity", ".", "shape", "[", "0", "]", ":", "return", "[", "]", "return", "sorted", "(", "list", "(", "nonzeros", "(", "self",...

42.333333

0.011583

def istft(stft_matrix, hop_length=None, win_length=None, window='hann', center=True, dtype=np.float32, length=None): """ Inverse short-time Fourier transform (ISTFT). Converts a complex-valued spectrogram `stft_matrix` to time-series `y` by minimizing the mean squared error between `stft_matr...

[ "def", "istft", "(", "stft_matrix", ",", "hop_length", "=", "None", ",", "win_length", "=", "None", ",", "window", "=", "'hann'", ",", "center", "=", "True", ",", "dtype", "=", "np", ".", "float32", ",", "length", "=", "None", ")", ":", "n_fft", "=",...

34.291391

0.000375

def handle_entityref(self, name): """Process a general entity reference of the form "&name;". Transform to text whenever possible.""" char_code = html_entities.name2codepoint.get(name, None) if char_code is not None: try: self.result += unichr(char_code).encod...

[ "def", "handle_entityref", "(", "self", ",", "name", ")", ":", "char_code", "=", "html_entities", ".", "name2codepoint", ".", "get", "(", "name", ",", "None", ")", "if", "char_code", "is", "not", "None", ":", "try", ":", "self", ".", "result", "+=", "u...

40.555556

0.008043

def write_json_to_file(json_data, filename="metadata"): """ Write all JSON in python dictionary to a new json file. :param dict json_data: JSON data :param str filename: Target filename (defaults to 'metadata.jsonld') :return None: """ logger_jsons.info("enter write_json_to_file") json_d...

[ "def", "write_json_to_file", "(", "json_data", ",", "filename", "=", "\"metadata\"", ")", ":", "logger_jsons", ".", "info", "(", "\"enter write_json_to_file\"", ")", "json_data", "=", "rm_empty_fields", "(", "json_data", ")", "# Use demjson to maintain unicode characters ...

43.6

0.002245

def set_fun_prop(f, k, v): """Set the value of property `k` to be `v` in function `f`. We define properties as annotations added to a function throughout the process of defining a function for verification, e.g. the argument types. This sets function `f`'s property named `k` to be value `v`. ...

[ "def", "set_fun_prop", "(", "f", ",", "k", ",", "v", ")", ":", "if", "not", "hasattr", "(", "f", ",", "_FUN_PROPS", ")", ":", "setattr", "(", "f", ",", "_FUN_PROPS", ",", "{", "}", ")", "if", "not", "isinstance", "(", "getattr", "(", "f", ",", ...

39.8

0.001637

def W(self,value): """ set fixed effect design """ if value is None: value = sp.zeros((self._N, 0)) assert value.shape[0]==self._N, 'Dimension mismatch' self._K = value.shape[1] self._W = value self._notify() self.clear_cache('predict_in_sample','Yres')

[ "def", "W", "(", "self", ",", "value", ")", ":", "if", "value", "is", "None", ":", "value", "=", "sp", ".", "zeros", "(", "(", "self", ".", "_N", ",", "0", ")", ")", "assert", "value", ".", "shape", "[", "0", "]", "==", "self", ".", "_N", "...

38

0.019293

def voc_eval(detpath, annopath, imageset_file, classname, cache_dir, ovthresh=0.5, use_07_metric=False): """ pascal voc evaluation :param detpath: detection results detpath.format(classname) :param annopath: annotations annopath.format(classname) :param imageset_file: text file containing list of im...

[ "def", "voc_eval", "(", "detpath", ",", "annopath", ",", "imageset_file", ",", "classname", ",", "cache_dir", ",", "ovthresh", "=", "0.5", ",", "use_07_metric", "=", "False", ")", ":", "if", "not", "os", ".", "path", ".", "isdir", "(", "cache_dir", ")", ...

36.441441

0.001444

def _do_api_call(self, method, data): """ Convenience method to carry out a standard API call against the Petfinder API. :param basestring method: The API method name to call. :param dict data: Key/value parameters to send to the API method. This varies based on the ...

[ "def", "_do_api_call", "(", "self", ",", "method", ",", "data", ")", ":", "# Developer API keys, auth tokens, and other standard, required args.", "data", ".", "update", "(", "{", "\"key\"", ":", "self", ".", "api_key", ",", "# No API methods currently use this, but we're...

40.261905

0.001732

def blueprint(self): """ :return: blueprint :rtype: dict """ blueprint = dict() for key in self.keys(): blueprint[key] = self.is_attribute_visible(key) return blueprint

[ "def", "blueprint", "(", "self", ")", ":", "blueprint", "=", "dict", "(", ")", "for", "key", "in", "self", ".", "keys", "(", ")", ":", "blueprint", "[", "key", "]", "=", "self", ".", "is_attribute_visible", "(", "key", ")", "return", "blueprint" ]

22.8

0.008439

def invoke( src, event_file='event.json', config_file='config.yaml', profile_name=None, verbose=False, ): """Simulates a call to your function. :param str src: The path to your Lambda ready project (folder must contain a valid config.yaml and handler module (e.g.: service.py). :...

[ "def", "invoke", "(", "src", ",", "event_file", "=", "'event.json'", ",", "config_file", "=", "'config.yaml'", ",", "profile_name", "=", "None", ",", "verbose", "=", "False", ",", ")", ":", "# Load and parse the config file.", "path_to_config_file", "=", "os", "...

32.677966

0.001007

def make_api_method(func): """ Provides a single entry point for modifying all API methods. For now this is limited to allowing the client object to be modified with an `extra_params` keyword arg to each method, that is then used as the params for each web service request. Please note that this...

[ "def", "make_api_method", "(", "func", ")", ":", "@", "functools", ".", "wraps", "(", "func", ")", "def", "wrapper", "(", "*", "args", ",", "*", "*", "kwargs", ")", ":", "args", "[", "0", "]", ".", "_extra_params", "=", "kwargs", ".", "pop", "(", ...

36.85

0.001323

def images(): """Upload images via REST interface Check if file upload was successful and sanatize user input. TODO: return file URL instead of filename """ if request.method == 'POST': file_upload = request.files['file'] if file_upload: image = dict() imag...

[ "def", "images", "(", ")", ":", "if", "request", ".", "method", "==", "'POST'", ":", "file_upload", "=", "request", ".", "files", "[", "'file'", "]", "if", "file_upload", ":", "image", "=", "dict", "(", ")", "image", "[", "'filename'", "]", "=", "sec...

39.5

0.000951

def namify(root_uri): '''Turns a root uri into a less noisy representation that will probably make sense in most circumstances. Used by Navigator's __repr__, but can be overridden if the Navigator is created with a 'name' parameter.''' root_uri = unidecode.unidecode(decode(unquote(root_uri), 'utf-8')) ...

[ "def", "namify", "(", "root_uri", ")", ":", "root_uri", "=", "unidecode", ".", "unidecode", "(", "decode", "(", "unquote", "(", "root_uri", ")", ",", "'utf-8'", ")", ")", "generic_domains", "=", "set", "(", "[", "'localhost'", ",", "'herokuapp'", ",", "'...

34.71831

0.001183

def export_fem(self, arms=None, format='json', df_kwargs=None): """ Export the project's form to event mapping Parameters ---------- arms : list Limit exported form event mappings to these arm numbers format : (``'json'``), ``'csv'``, ``'xml'`` Re...

[ "def", "export_fem", "(", "self", ",", "arms", "=", "None", ",", "format", "=", "'json'", ",", "df_kwargs", "=", "None", ")", ":", "ret_format", "=", "format", "if", "format", "==", "'df'", ":", "from", "pandas", "import", "read_csv", "ret_format", "=", ...

34.973684

0.001464

def copyfile(src, dst): """Copy data from src to dst""" if _samefile(src, dst): raise Error("`%s` and `%s` are the same file" % (src, dst)) for fn in [src, dst]: try: st = os.stat(fn) except OSError: # File most likely does not exist pass ...

[ "def", "copyfile", "(", "src", ",", "dst", ")", ":", "if", "_samefile", "(", "src", ",", "dst", ")", ":", "raise", "Error", "(", "\"`%s` and `%s` are the same file\"", "%", "(", "src", ",", "dst", ")", ")", "for", "fn", "in", "[", "src", ",", "dst", ...

31.473684

0.001623

def combine_filters(filters, operator=AND): # type: (Iterable[Any], int) -> Optional[Union[LDAPFilter, LDAPCriteria]] """ Combines two LDAP filters, which can be strings or LDAPFilter objects :param filters: Filters to combine :param operator: The operator for combination :return: The combined ...

[ "def", "combine_filters", "(", "filters", ",", "operator", "=", "AND", ")", ":", "# type: (Iterable[Any], int) -> Optional[Union[LDAPFilter, LDAPCriteria]]", "if", "not", "filters", ":", "return", "None", "if", "not", "hasattr", "(", "filters", ",", "\"__iter__\"", ")...

30.404762

0.000759

def tilequeue_rawr_enqueue(cfg, args): """command to take tile expiry path and enqueue for rawr tile generation""" from tilequeue.stats import RawrTileEnqueueStatsHandler from tilequeue.rawr import make_rawr_enqueuer_from_cfg msg_marshall_yaml = cfg.yml.get('message-marshall') assert msg_marshall_y...

[ "def", "tilequeue_rawr_enqueue", "(", "cfg", ",", "args", ")", ":", "from", "tilequeue", ".", "stats", "import", "RawrTileEnqueueStatsHandler", "from", "tilequeue", ".", "rawr", "import", "make_rawr_enqueuer_from_cfg", "msg_marshall_yaml", "=", "cfg", ".", "yml", "....

43.555556

0.001248

def query_all(**kwargs): ''' Qeury recent wiki. ''' kind = kwargs.get('kind', '1') limit = kwargs.get('limit', 50) return TabWiki.select().where(TabWiki.kind == kind).limit(limit)

[ "def", "query_all", "(", "*", "*", "kwargs", ")", ":", "kind", "=", "kwargs", ".", "get", "(", "'kind'", ",", "'1'", ")", "limit", "=", "kwargs", ".", "get", "(", "'limit'", ",", "50", ")", "return", "TabWiki", ".", "select", "(", ")", ".", "wher...

27.625

0.008772

def record(self, chunk_size = None, dfmt = "f", channels = 1, rate = DEFAULT_SAMPLE_RATE, **kwargs ): """ Records audio from device into a Stream. Parameters ---------- chunk_size : Number of samples per c...

[ "def", "record", "(", "self", ",", "chunk_size", "=", "None", ",", "dfmt", "=", "\"f\"", ",", "channels", "=", "1", ",", "rate", "=", "DEFAULT_SAMPLE_RATE", ",", "*", "*", "kwargs", ")", ":", "if", "chunk_size", "is", "None", ":", "chunk_size", "=", ...

32.136364

0.012354

def genargs(prog: Optional[str] = None) -> ArgumentParser: """ Create a command line parser :return: parser """ parser = ArgumentParser(prog) parser.add_argument("rdf", help="Input RDF file or SPARQL endpoint if slurper or sparql options") parser.add_argument("shex", help="ShEx specification...

[ "def", "genargs", "(", "prog", ":", "Optional", "[", "str", "]", "=", "None", ")", "->", "ArgumentParser", ":", "parser", "=", "ArgumentParser", "(", "prog", ")", "parser", ".", "add_argument", "(", "\"rdf\"", ",", "help", "=", "\"Input RDF file or SPARQL en...

74.423077

0.008163

def unroll(self, length, inputs, begin_state=None, layout='NTC', merge_outputs=None): """Unroll an RNN cell across time steps. Parameters ---------- length : int Number of steps to unroll. inputs : Symbol, list of Symbol, or None If `inputs` is a single S...

[ "def", "unroll", "(", "self", ",", "length", ",", "inputs", ",", "begin_state", "=", "None", ",", "layout", "=", "'NTC'", ",", "merge_outputs", "=", "None", ")", ":", "self", ".", "reset", "(", ")", "inputs", ",", "_", "=", "_normalize_sequence", "(", ...

38.894737

0.00176

def remove_handler(self, name): """ Remove handler from the logging system if present already. Available handlers are currently: ['console-bw', 'console-color', 'rotating-log'] """ if name in self.handlers: self.log.removeHandler(self.handlers[name])

[ "def", "remove_handler", "(", "self", ",", "name", ")", ":", "if", "name", "in", "self", ".", "handlers", ":", "self", ".", "log", ".", "removeHandler", "(", "self", ".", "handlers", "[", "name", "]", ")" ]

42.285714

0.009934

def clean_old_jobs(): ''' Clean out minions's return data for old jobs. Normally, hset 'ret:<jid>' are saved with a TTL, and will eventually get cleaned by redis.But for jobs with some very late minion return, the corresponding hset's TTL will be refreshed to a too late timestamp, we'll do manu...

[ "def", "clean_old_jobs", "(", ")", ":", "serv", "=", "_get_serv", "(", "ret", "=", "None", ")", "ret_jids", "=", "serv", ".", "keys", "(", "'ret:*'", ")", "living_jids", "=", "set", "(", "serv", ".", "keys", "(", "'load:*'", ")", ")", "to_remove", "=...

35.9

0.001357

def losses_by_tag(dstore, tag): """ Statistical average losses by tag. For instance call $ oq extract losses_by_tag/occupancy """ dt = [(tag, vstr)] + dstore['oqparam'].loss_dt_list() aids = dstore['assetcol/array'][tag] dset, stats = _get(dstore, 'avg_losses') arr = dset.value tagv...

[ "def", "losses_by_tag", "(", "dstore", ",", "tag", ")", ":", "dt", "=", "[", "(", "tag", ",", "vstr", ")", "]", "+", "dstore", "[", "'oqparam'", "]", ".", "loss_dt_list", "(", ")", "aids", "=", "dstore", "[", "'assetcol/array'", "]", "[", "tag", "]...

37.05

0.001316

def _build_mac_signature_key_information(self, value): """ Build an MACSignatureKeyInformation struct from a dictionary. Args: value (dict): A dictionary containing the key/value pairs for a MACSignatureKeyInformation struct. Returns: MACSignatur...

[ "def", "_build_mac_signature_key_information", "(", "self", ",", "value", ")", ":", "if", "value", "is", "None", ":", "return", "None", "if", "not", "isinstance", "(", "value", ",", "dict", ")", ":", "raise", "TypeError", "(", "\"MAC/signature key information mu...

36.322581

0.00173

def make_V_and_J_mask_mapping(self, genV, genJ): """Constructs the V and J mask mapping dictionaries. Parameters ---------- genV : list List of genomic V information. genJ : list List of genomic J information. """ ...

[ "def", "make_V_and_J_mask_mapping", "(", "self", ",", "genV", ",", "genJ", ")", ":", "#construct mapping between allele/gene names and index for custom V_usage_masks", "V_allele_names", "=", "[", "V", "[", "0", "]", "for", "V", "in", "genV", "]", "V_mask_mapping", "="...

43.564103

0.009211

def rstyle(self, name): """ Remove one style """ try: del self.chart_style[name] except KeyError: self.warning("Style " + name + " is not set") except: self.err("Can not remove style " + name)

[ "def", "rstyle", "(", "self", ",", "name", ")", ":", "try", ":", "del", "self", ".", "chart_style", "[", "name", "]", "except", "KeyError", ":", "self", ".", "warning", "(", "\"Style \"", "+", "name", "+", "\" is not set\"", ")", "except", ":", "self",...

20.4

0.056338

def squeeze(self, trits, offset=0, length=HASH_LENGTH): # type: (MutableSequence[int], Optional[int], Optional[int]) -> None """ Squeeze trits from the sponge. :param trits: Sequence that the squeezed trits will be copied to. Note: this object will be modified! ...

[ "def", "squeeze", "(", "self", ",", "trits", ",", "offset", "=", "0", ",", "length", "=", "HASH_LENGTH", ")", ":", "# type: (MutableSequence[int], Optional[int], Optional[int]) -> None", "# Squeeze is kind of like the opposite of absorb; it copies", "# trits from internal state t...

33.810345

0.001487

def magfit(logfile): '''find best magnetometer offset fit to a log file''' print("Processing log %s" % filename) mlog = mavutil.mavlink_connection(filename, notimestamps=args.notimestamps) data = [] last_t = 0 offsets = Vector3(0,0,0) # now gather all the data while True: m =...

[ "def", "magfit", "(", "logfile", ")", ":", "print", "(", "\"Processing log %s\"", "%", "filename", ")", "mlog", "=", "mavutil", ".", "mavlink_connection", "(", "filename", ",", "notimestamps", "=", "args", ".", "notimestamps", ")", "data", "=", "[", "]", "...

31.530303

0.008854

def transform(geom, to_sref): """Returns a transformed Geometry. Arguments: geom -- any coercible Geometry value or Envelope to_sref -- SpatialReference or EPSG ID as int """ # If we have an envelope, assume it's in the target sref. try: geom = getattr(geom, 'polygon', Envelope(geom...

[ "def", "transform", "(", "geom", ",", "to_sref", ")", ":", "# If we have an envelope, assume it's in the target sref.", "try", ":", "geom", "=", "getattr", "(", "geom", ",", "'polygon'", ",", "Envelope", "(", "geom", ")", ".", "polygon", ")", "except", "(", "T...

31.76

0.001222

def _get_spec(self, index): user_data = self.itemData(index) """ :type: QVariant""" spec = user_data.toPyObject() return {str(key): value for key, value in spec.items()}

[ "def", "_get_spec", "(", "self", ",", "index", ")", ":", "user_data", "=", "self", ".", "itemData", "(", "index", ")", "spec", "=", "user_data", ".", "toPyObject", "(", ")", "return", "{", "str", "(", "key", ")", ":", "value", "for", "key", ",", "v...

39.4

0.00995

def output_eol_literal_marker(self, m): """Pass through rest link.""" marker = ':' if m.group(1) is None else '' return self.renderer.eol_literal_marker(marker)

[ "def", "output_eol_literal_marker", "(", "self", ",", "m", ")", ":", "marker", "=", "':'", "if", "m", ".", "group", "(", "1", ")", "is", "None", "else", "''", "return", "self", ".", "renderer", ".", "eol_literal_marker", "(", "marker", ")" ]

45.25

0.01087

def algorithm_u(ns, m): """ taken from `Stack Overflow <https://codereview.stackexchange.com/questions/1526/finding-all-k-subset-partitions>`_ """ def visit(nv, av): ps = [[] for _ in range(m)] for jv in range(nv): ps[av[jv + 1]].append(ns[jv]) return ps def f(m...

[ "def", "algorithm_u", "(", "ns", ",", "m", ")", ":", "def", "visit", "(", "nv", ",", "av", ")", ":", "ps", "=", "[", "[", "]", "for", "_", "in", "range", "(", "m", ")", "]", "for", "jv", "in", "range", "(", "nv", ")", ":", "ps", "[", "av"...

30.35

0.000798

def SetAttributes(self, urn, attributes, to_delete, add_child_index=True, mutation_pool=None): """Sets the attributes in the data store.""" attributes[AFF4Object.SchemaCls.LAST] = [ rdfvalue.RDFDatetime....

[ "def", "SetAttributes", "(", "self", ",", "urn", ",", "attributes", ",", "to_delete", ",", "add_child_index", "=", "True", ",", "mutation_pool", "=", "None", ")", ":", "attributes", "[", "AFF4Object", ".", "SchemaCls", ".", "LAST", "]", "=", "[", "rdfvalue...

29

0.014514

def _replace(self, **kwds): 'Return a new NamedTuple object replacing specified fields with new values' result = self._make(map(kwds.pop, self._fields, self)) if kwds: raise ValueError('Got unexpected field names: %r' % kwds.keys()) return result

[ "def", "_replace", "(", "self", ",", "*", "*", "kwds", ")", ":", "result", "=", "self", ".", "_make", "(", "map", "(", "kwds", ".", "pop", ",", "self", ".", "_fields", ",", "self", ")", ")", "if", "kwds", ":", "raise", "ValueError", "(", "'Got un...

37.625

0.016234

def execute(self, method, args, kwargs): """ Execute the given method and stores its result. The result is considered "done" even if the method raises an exception :param method: The method to execute :param args: Method positional arguments :param kwargs: Method keyword...

[ "def", "execute", "(", "self", ",", "method", ",", "args", ",", "kwargs", ")", ":", "# Normalize arguments", "if", "args", "is", "None", ":", "args", "=", "[", "]", "if", "kwargs", "is", "None", ":", "kwargs", "=", "{", "}", "try", ":", "# Call the m...

31.866667

0.00203

def kappa_analysis_cicchetti(kappa): """ Analysis kappa number with Cicchetti benchmark. :param kappa: kappa number :type kappa : float :return: strength of agreement as str """ try: if kappa < 0.4: return "Poor" if kappa >= 0.4 and kappa < 0.59: retu...

[ "def", "kappa_analysis_cicchetti", "(", "kappa", ")", ":", "try", ":", "if", "kappa", "<", "0.4", ":", "return", "\"Poor\"", "if", "kappa", ">=", "0.4", "and", "kappa", "<", "0.59", ":", "return", "\"Fair\"", "if", "kappa", ">=", "0.59", "and", "kappa", ...

26.85

0.001799

def update_translations(self, entries, translated_strings): """Update translations in entries. The order and number of translations should match to get_strings_to_translate() result. :param entries: list of entries to translate :type entries: collections.Iterable[polib.POEntry] | polib...

[ "def", "update_translations", "(", "self", ",", "entries", ",", "translated_strings", ")", ":", "translations", "=", "iter", "(", "translated_strings", ")", "for", "entry", "in", "entries", ":", "if", "not", "self", ".", "need_translate", "(", "entry", ")", ...

44.971429

0.002488

def create_one(self, commit=True): ''' Create and return one model instance. If *commit* is ``False`` the instance will not be saved and many to many relations will not be processed. Subclasses that override ``create_one`` can specify arbitrary keyword arguments. They wi...

[ "def", "create_one", "(", "self", ",", "commit", "=", "True", ")", ":", "tries", "=", "self", ".", "tries", "instance", "=", "self", ".", "model", "(", ")", "process", "=", "instance", ".", "_meta", ".", "fields", "while", "process", "and", "tries", ...

40.610169

0.002445

def query_edges_by_pubmed_identifiers(self, pubmed_identifiers: List[str]) -> List[Edge]: """Get all edges annotated to the documents identified by the given PubMed identifiers.""" fi = and_(Citation.type == CITATION_TYPE_PUBMED, Citation.reference.in_(pubmed_identifiers)) return self.session.qu...

[ "def", "query_edges_by_pubmed_identifiers", "(", "self", ",", "pubmed_identifiers", ":", "List", "[", "str", "]", ")", "->", "List", "[", "Edge", "]", ":", "fi", "=", "and_", "(", "Citation", ".", "type", "==", "CITATION_TYPE_PUBMED", ",", "Citation", ".", ...

93.25

0.015957

def node_display(root, expandattrs=False, expandvals=False, output=sys.stdout): """ Write an indented representation of the Node object on the output; this is intended for testing/debugging purposes. :param root: a Node object :param bool expandattrs: if True, the values of the attributes are ...

[ "def", "node_display", "(", "root", ",", "expandattrs", "=", "False", ",", "expandvals", "=", "False", ",", "output", "=", "sys", ".", "stdout", ")", ":", "_display", "(", "root", ",", "''", ",", "expandattrs", ",", "expandvals", ",", "output", ")" ]

48.692308

0.00155

def min_interp(interp_object): """ Find the global minimum of a function represented as an interpolation object. """ try: return interp_object.x[interp_object(interp_object.x).argmin()] except Exception as e: s = "Cannot find minimum of the interpolation object" + str(interp_object.x...

[ "def", "min_interp", "(", "interp_object", ")", ":", "try", ":", "return", "interp_object", ".", "x", "[", "interp_object", "(", "interp_object", ".", "x", ")", ".", "argmin", "(", ")", "]", "except", "Exception", "as", "e", ":", "s", "=", "\"Cannot find...

42.8

0.011442

def diff(name, **kwargs): ''' Gets the difference between the candidate and the current configuration. .. code-block:: yaml get the diff: junos: - diff - id: 10 Parameters: Optional * id: The rollback id value [0-49]. (...

[ "def", "diff", "(", "name", ",", "*", "*", "kwargs", ")", ":", "ret", "=", "{", "'name'", ":", "name", ",", "'changes'", ":", "{", "}", ",", "'result'", ":", "True", ",", "'comment'", ":", "''", "}", "ret", "[", "'changes'", "]", "=", "__salt__",...

24.315789

0.002083

def sersic_constant(self): """ A parameter derived from Sersic index which ensures that effective radius contains 50% of the profile's total integrated light. """ return (2 * self.sersic_index) - (1. / 3.) + (4. / (405. * self.sersic_index)) + ( 46. / (25515. * self.sersi...

[ "def", "sersic_constant", "(", "self", ")", ":", "return", "(", "2", "*", "self", ".", "sersic_index", ")", "-", "(", "1.", "/", "3.", ")", "+", "(", "4.", "/", "(", "405.", "*", "self", ".", "sersic_index", ")", ")", "+", "(", "46.", "/", "(",...

64.857143

0.01087

def mkdir(self, foldername): 'Create a new subfolder and return the new JFSFolder' #url = '%s?mkDir=true' % posixpath.join(self.path, foldername) url = posixpath.join(self.path, foldername) params = {'mkDir':'true'} r = self.jfs.post(url, params) self.sync() retur...

[ "def", "mkdir", "(", "self", ",", "foldername", ")", ":", "#url = '%s?mkDir=true' % posixpath.join(self.path, foldername)", "url", "=", "posixpath", ".", "join", "(", "self", ".", "path", ",", "foldername", ")", "params", "=", "{", "'mkDir'", ":", "'true'", "}",...

39.5

0.012384

async def open_session(self, request: BaseRequestWebsocket) -> Session: """Open and return a Session using the request.""" return await ensure_coroutine(self.session_interface.open_session)(self, request)

[ "async", "def", "open_session", "(", "self", ",", "request", ":", "BaseRequestWebsocket", ")", "->", "Session", ":", "return", "await", "ensure_coroutine", "(", "self", ".", "session_interface", ".", "open_session", ")", "(", "self", ",", "request", ")" ]

72.666667

0.013636

def _read_record(self, f, blk, chans): """Read raw data from a single EDF channel. Parameters ---------- i_chan : int index of the channel to read begsam : int index of the first sample endsam : int index of the last sample Re...

[ "def", "_read_record", "(", "self", ",", "f", ",", "blk", ",", "chans", ")", ":", "dat_in_rec", "=", "empty", "(", "(", "len", "(", "chans", ")", ",", "self", ".", "max_smp", ")", ")", "i_ch_in_dat", "=", "0", "for", "i_ch", "in", "chans", ":", "...

27.548387

0.002262

def CmykToCmy(c, m, y, k): '''Convert the color from CMYK coordinates to CMY. Parameters: :c: The Cyan component value [0...1] :m: The Magenta component value [0...1] :y: The Yellow component value [0...1] :k: The Black component value [0...1] Return...

[ "def", "CmykToCmy", "(", "c", ",", "m", ",", "y", ",", "k", ")", ":", "mk", "=", "1", "-", "k", "return", "(", "(", "c", "*", "mk", "+", "k", ")", ",", "(", "m", "*", "mk", "+", "k", ")", ",", "(", "y", "*", "mk", "+", "k", ")", ")"...

21.88

0.001751

def get_Zstar(x_segment, y_segment, x_int, y_int, slope, n): """ input: x_segment, y_segment, x_int, y_int, slope, n output: Z* (Arai plot zigzag parameter (alternate)) """ total = 0 first_time = True for num, x in enumerate(x_segment): b_wiggle = get_b_wiggle(x, y_segment[num], y_in...

[ "def", "get_Zstar", "(", "x_segment", ",", "y_segment", ",", "x_int", ",", "y_int", ",", "slope", ",", "n", ")", ":", "total", "=", "0", "first_time", "=", "True", "for", "num", ",", "x", "in", "enumerate", "(", "x_segment", ")", ":", "b_wiggle", "="...

35.928571

0.00969

def linspace(self,dim,*args,**kwargs): """ Creates a range of values for a specific dimension that go from its minimum to its maximum either in certain steps (resolution != None) or a fixed number of bins (bins != None). The output can be converted into a different unit (eg...

[ "def", "linspace", "(", "self", ",", "dim", ",", "*", "args", ",", "*", "*", "kwargs", ")", ":", "return", "self", ".", "spike_times", ".", "get_label", "(", "dim", ")", ".", "linspace", "(", "*", "args", ",", "*", "*", "kwargs", ")" ]

51.272727

0.013925

def readsleb128(buff): """ Read a signed LEB128 at the current position of the buffer. :param buff: a file like object :return: decoded sLEB128 """ result = 0 shift = 0 for x in range(0, 5): cur = get_byte(buff) result |= (cur & 0x7f) << shift shift += 7 ...

[ "def", "readsleb128", "(", "buff", ")", ":", "result", "=", "0", "shift", "=", "0", "for", "x", "in", "range", "(", "0", ",", "5", ")", ":", "cur", "=", "get_byte", "(", "buff", ")", "result", "|=", "(", "cur", "&", "0x7f", ")", "<<", "shift", ...

23.833333

0.001681

def _read_layers(self, layers, image_id): """ Reads the JSON metadata for specified layer / image id """ for layer in self.docker.history(image_id): layers.append(layer['Id'])

[ "def", "_read_layers", "(", "self", ",", "layers", ",", "image_id", ")", ":", "for", "layer", "in", "self", ".", "docker", ".", "history", "(", "image_id", ")", ":", "layers", ".", "append", "(", "layer", "[", "'Id'", "]", ")" ]

40

0.009804

def Lewis(D=None, alpha=None, Cp=None, k=None, rho=None): r'''Calculates Lewis number or `Le` for a fluid with the given parameters. .. math:: Le = \frac{k}{\rho C_p D} = \frac{\alpha}{D} Inputs can be either of the following sets: * Diffusivity and Thermal diffusivity * Diffusivity, heat...

[ "def", "Lewis", "(", "D", "=", "None", ",", "alpha", "=", "None", ",", "Cp", "=", "None", ",", "k", "=", "None", ",", "rho", "=", "None", ")", ":", "if", "k", "and", "Cp", "and", "rho", ":", "alpha", "=", "k", "/", "(", "rho", "*", "Cp", ...

27.9

0.000577

def optimal_partitions(sizes, counts, num_part): """Compute the optimal partitions given a distribution of set sizes. Args: sizes (numpy.array): The complete domain of set sizes in ascending order. counts (numpy.array): The frequencies of all set sizes in the same order ...

[ "def", "optimal_partitions", "(", "sizes", ",", "counts", ",", "num_part", ")", ":", "if", "num_part", "<", "2", ":", "return", "[", "(", "sizes", "[", "0", "]", ",", "sizes", "[", "-", "1", "]", ")", "]", "if", "num_part", ">=", "len", "(", "siz...

38.391304

0.001105

def register_checker(self, checker): """register a new checker checker is an object implementing IRawChecker or / and IAstroidChecker """ assert checker.priority <= 0, "checker priority can't be >= 0" self._checkers[checker.name].append(checker) for r_id, r_title, r_cb i...

[ "def", "register_checker", "(", "self", ",", "checker", ")", ":", "assert", "checker", ".", "priority", "<=", "0", ",", "\"checker priority can't be >= 0\"", "self", ".", "_checkers", "[", "checker", ".", "name", "]", ".", "append", "(", "checker", ")", "for...

43.611111

0.002494

def ravd(result, reference): """ Relative absolute volume difference. Compute the relative absolute volume difference between the (joined) binary objects in the two images. Parameters ---------- result : array_like Input data containing objects. Can be any type but will be ...

[ "def", "ravd", "(", "result", ",", "reference", ")", ":", "result", "=", "numpy", ".", "atleast_1d", "(", "result", ".", "astype", "(", "numpy", ".", "bool", ")", ")", "reference", "=", "numpy", ".", "atleast_1d", "(", "reference", ".", "astype", "(", ...

28.465116

0.010265

def _get_price(self, data, market, field): """ Given the data (in json format), returns the field for a given market. """ for m in data: if m["symbol"] == market: return m[field]

[ "def", "_get_price", "(", "self", ",", "data", ",", "market", ",", "field", ")", ":", "for", "m", "in", "data", ":", "if", "m", "[", "\"symbol\"", "]", "==", "market", ":", "return", "m", "[", "field", "]" ]

29.875

0.00813

def length(self): """Length in Feet (f)""" length = self.parse['attributes'].get('Shape_Length') if length: return round(float(length))

[ "def", "length", "(", "self", ")", ":", "length", "=", "self", ".", "parse", "[", "'attributes'", "]", ".", "get", "(", "'Shape_Length'", ")", "if", "length", ":", "return", "round", "(", "float", "(", "length", ")", ")" ]

33.4

0.011696

def download_mail_attachments(self, name, local_output_directory, mail_folder='INBOX', check_regex=False, latest_only=False, ...

[ "def", "download_mail_attachments", "(", "self", ",", "name", ",", "local_output_directory", ",", "mail_folder", "=", "'INBOX'", ",", "check_regex", "=", "False", ",", "latest_only", "=", "False", ",", "not_found_mode", "=", "'raise'", ")", ":", "mail_attachments"...

52.815789

0.008317

def list(self, limit=None, page_size=None): """ Lists KeyInstance records from the API as a list. Unlike stream(), this operation is eager and will load `limit` records into memory before returning. :param int limit: Upper limit for the number of records to return. list() guaran...

[ "def", "list", "(", "self", ",", "limit", "=", "None", ",", "page_size", "=", "None", ")", ":", "return", "list", "(", "self", ".", "stream", "(", "limit", "=", "limit", ",", "page_size", "=", "page_size", ",", ")", ")" ]

56.705882

0.008163

def run_as_admin(command, cwd=None, environ=None): """ Runs a command as an admin in the specified *cwd* and *environ*. On Windows, this creates a temporary directory where this information is stored temporarily so that the new process can launch the proper subprocess. """ if isinstance(command, str): ...

[ "def", "run_as_admin", "(", "command", ",", "cwd", "=", "None", ",", "environ", "=", "None", ")", ":", "if", "isinstance", "(", "command", ",", "str", ")", ":", "command", "=", "shlex", ".", "split", "(", "command", ")", "if", "os", ".", "name", "=...

29.8

0.009756

def user_verify_password(user_id=None, name=None, password=None, profile=None, **connection_args): ''' Verify a user's password CLI Examples: .. code-block:: bash salt '*' keystone.user_verify_password name=test password=foobar salt '*' keystone.user_verify_pa...

[ "def", "user_verify_password", "(", "user_id", "=", "None", ",", "name", "=", "None", ",", "password", "=", "None", ",", "profile", "=", "None", ",", "*", "*", "connection_args", ")", ":", "kstone", "=", "auth", "(", "profile", ",", "*", "*", "connecti...

35.021739

0.001208

def selection(self): """Returns items in selection as a QItemSelection object""" sel = QtGui.QItemSelection() for index in self.selectedIndexes(): sel.select(index, index) return sel

[ "def", "selection", "(", "self", ")", ":", "sel", "=", "QtGui", ".", "QItemSelection", "(", ")", "for", "index", "in", "self", ".", "selectedIndexes", "(", ")", ":", "sel", ".", "select", "(", "index", ",", "index", ")", "return", "sel" ]

36.833333

0.00885

def clipTo(self, bsp): """ Remove all polygons in this BSP tree that are inside the other BSP tree `bsp`. """ self.polygons = bsp.clipPolygons(self.polygons) if self.front: self.front.clipTo(bsp) if self.back: self.back.clipTo(bsp)

[ "def", "clipTo", "(", "self", ",", "bsp", ")", ":", "self", ".", "polygons", "=", "bsp", ".", "clipPolygons", "(", "self", ".", "polygons", ")", "if", "self", ".", "front", ":", "self", ".", "front", ".", "clipTo", "(", "bsp", ")", "if", "self", ...

30.5

0.015924

def notify(cls, user_or_email_, object_id=None, **filters): """Start notifying the given user or email address when this event occurs and meets the criteria given in ``filters``. Return the created (or the existing matching) Watch so you can call :meth:`~tidings.models.Watch.activate()`...

[ "def", "notify", "(", "cls", ",", "user_or_email_", ",", "object_id", "=", "None", ",", "*", "*", "filters", ")", ":", "# A test-for-existence-then-create race condition exists here, but it", "# doesn't matter: de-duplication on fire() and deletion of all matches", "# on stop_not...

46.140625

0.000663

def selected(self): """Action to be executed when a valid item has been selected""" EditableComboBox.selected(self) self.open_dir.emit(self.currentText())

[ "def", "selected", "(", "self", ")", ":", "EditableComboBox", ".", "selected", "(", "self", ")", "self", ".", "open_dir", ".", "emit", "(", "self", ".", "currentText", "(", ")", ")" ]

44.5

0.01105

def namedb_get_all_namespace_ids( cur ): """ Get a list of all READY namespace IDs. """ query = "SELECT namespace_id FROM namespaces WHERE op = ?;" args = (NAMESPACE_READY,) namespace_rows = namedb_query_execute( cur, query, args ) ret = [] for namespace_row in namespace_rows: ...

[ "def", "namedb_get_all_namespace_ids", "(", "cur", ")", ":", "query", "=", "\"SELECT namespace_id FROM namespaces WHERE op = ?;\"", "args", "=", "(", "NAMESPACE_READY", ",", ")", "namespace_rows", "=", "namedb_query_execute", "(", "cur", ",", "query", ",", "args", ")"...

26.142857

0.01847

def newick_replace_otuids(tree, biomf): """ Replace the OTU ids in the Newick phylogenetic tree format with truncated OTU names """ for val, id_, md in biomf.iter(axis="observation"): otu_loc = find_otu(id_, tree) if otu_loc is not None: tree = tree[:otu_loc] + \ ...

[ "def", "newick_replace_otuids", "(", "tree", ",", "biomf", ")", ":", "for", "val", ",", "id_", ",", "md", "in", "biomf", ".", "iter", "(", "axis", "=", "\"observation\"", ")", ":", "otu_loc", "=", "find_otu", "(", "id_", ",", "tree", ")", "if", "otu_...

34.333333

0.002364

def _datetime_to_rfc3339(value, ignore_zone=True): """Convert a timestamp to a string. :type value: :class:`datetime.datetime` :param value: The datetime object to be converted to a string. :type ignore_zone: bool :param ignore_zone: If True, then the timezone (if any) of the datetime ...

[ "def", "_datetime_to_rfc3339", "(", "value", ",", "ignore_zone", "=", "True", ")", ":", "if", "not", "ignore_zone", "and", "value", ".", "tzinfo", "is", "not", "None", ":", "# Convert to UTC and remove the time zone info.", "value", "=", "value", ".", "replace", ...

35.111111

0.001541

def list_to_dict(lst, key=None, remove_key=True): """ convert a list of dicts to a dict with root keys Parameters ---------- lst : list[dict] key : str or None a key contained by all of the dicts if None use index number string remove_key : bool remove key from dicts in ...

[ "def", "list_to_dict", "(", "lst", ",", "key", "=", "None", ",", "remove_key", "=", "True", ")", ":", "assert", "all", "(", "[", "is_dict_like", "(", "d", ")", "for", "d", "in", "lst", "]", ")", "if", "key", "is", "not", "None", ":", "assert", "a...

25.1

0.000959

def snip(tag="",start=-2,write_date=True): """ This function records a previously execute notebook cell into a file (default: ipython_history.py) a tag can be added to sort the cell `start` defines which cell in the history to record. Default is -2, ie. the one executed previously to the ...

[ "def", "snip", "(", "tag", "=", "\"\"", ",", "start", "=", "-", "2", ",", "write_date", "=", "True", ")", ":", "import", "IPython", "i", "=", "IPython", ".", "get_ipython", "(", ")", "last_history", "=", "i", ".", "history_manager", ".", "get_range", ...

46.678571

0.011244

def values(self): """ Iterate values. """ for key, value in self.__data__.items(): if key not in (META, KEY): yield DictTree(__data__=value)

[ "def", "values", "(", "self", ")", ":", "for", "key", ",", "value", "in", "self", ".", "__data__", ".", "items", "(", ")", ":", "if", "key", "not", "in", "(", "META", ",", "KEY", ")", ":", "yield", "DictTree", "(", "__data__", "=", "value", ")" ]

27.714286

0.01

def get_if_list(): """Returns a list containing all network interfaces.""" # Get ifconfig output try: fd = os.popen("%s -a" % conf.prog.ifconfig) except OSError as msg: raise Scapy_Exception("Failed to execute ifconfig: (%s)" % msg) # Get interfaces interfaces = [line[:line.fin...

[ "def", "get_if_list", "(", ")", ":", "# Get ifconfig output", "try", ":", "fd", "=", "os", ".", "popen", "(", "\"%s -a\"", "%", "conf", ".", "prog", ".", "ifconfig", ")", "except", "OSError", "as", "msg", ":", "raise", "Scapy_Exception", "(", "\"Failed to ...

31.692308

0.002358

def get_param_descriptor(mcs,param_name): """ Goes up the class hierarchy (starting from the current class) looking for a Parameter class attribute param_name. As soon as one is found as a class attribute, that Parameter is returned along with the class in which it is declared. ...

[ "def", "get_param_descriptor", "(", "mcs", ",", "param_name", ")", ":", "classes", "=", "classlist", "(", "mcs", ")", "for", "c", "in", "classes", "[", ":", ":", "-", "1", "]", ":", "attribute", "=", "c", ".", "__dict__", ".", "get", "(", "param_name...

41.692308

0.01083

def get_pipeline_path(pipeline_name, working_directory): """Look for the pipeline in the various places it could be. First checks the cwd. Then checks pypyr/pipelines dir. Args: pipeline_name: string. Name of pipeline to find working_directory: string. Path in which to look for pipeline_na...

[ "def", "get_pipeline_path", "(", "pipeline_name", ",", "working_directory", ")", ":", "logger", ".", "debug", "(", "\"starting\"", ")", "# look for name.yaml in the pipelines/ sub-directory", "logger", ".", "debug", "(", "f\"current directory is {working_directory}\"", ")", ...

36.235294

0.000527

def latex(self): """Gives a latex representation of the assessment.""" output = self.latex_preamble output += self._repr_latex_() output += self.latex_post return output

[ "def", "latex", "(", "self", ")", ":", "output", "=", "self", ".", "latex_preamble", "output", "+=", "self", ".", "_repr_latex_", "(", ")", "output", "+=", "self", ".", "latex_post", "return", "output" ]

34

0.009569

def from_csv(filename_or_buffer, copy_index=True, **kwargs): """Shortcut to read a csv file using pandas and convert to a DataFrame directly. :rtype: DataFrame """ import pandas as pd return from_pandas(pd.read_csv(filename_or_buffer, **kwargs), copy_index=copy_index)

[ "def", "from_csv", "(", "filename_or_buffer", ",", "copy_index", "=", "True", ",", "*", "*", "kwargs", ")", ":", "import", "pandas", "as", "pd", "return", "from_pandas", "(", "pd", ".", "read_csv", "(", "filename_or_buffer", ",", "*", "*", "kwargs", ")", ...

40.428571

0.010381

def welch(timeseries, segmentlength, noverlap=None, scheme=None, **kwargs): """Calculate a PSD using Welch's method with a mean average Parameters ---------- timeseries : `~gwpy.timeseries.TimeSeries` input `TimeSeries` data. segmentlength : `int` number of samples in single averag...

[ "def", "welch", "(", "timeseries", ",", "segmentlength", ",", "noverlap", "=", "None", ",", "scheme", "=", "None", ",", "*", "*", "kwargs", ")", ":", "from", "pycbc", ".", "psd", "import", "welch", "as", "pycbc_welch", "# default to 'standard' welch", "kwarg...

29.117647

0.000651

def step_rhythmic(self, tau=1.0, error_coupling=1.0): """Generate a single step of x for rhythmic closed loop movements. Decaying from 1 to 0 according to dx = -ax*x. tau float: gain on execution time increase tau to make the system execute faster er...

[ "def", "step_rhythmic", "(", "self", ",", "tau", "=", "1.0", ",", "error_coupling", "=", "1.0", ")", ":", "self", ".", "x", "+=", "(", "1", "*", "error_coupling", "*", "tau", ")", "*", "self", ".", "dt", "return", "self", ".", "x" ]

40.727273

0.010917

def build_uda_config_overrides(targets): """ Returns a list of UDAs defined by given targets For all targets in `targets`, build a dictionary of configuration overrides representing the UDAs defined by the passed-in services (`targets`). Given a hypothetical situation in which you have two services, t...

[ "def", "build_uda_config_overrides", "(", "targets", ")", ":", "from", "bugwarrior", ".", "services", "import", "get_service", "targets_udas", "=", "{", "}", "for", "target", "in", "targets", ":", "targets_udas", ".", "update", "(", "get_service", "(", "target",...

32.307692

0.00077

def poll( self, transaction_hash: bytes, ): """ Wait until the `transaction_hash` is applied or rejected. Args: transaction_hash: Transaction hash that we are waiting for. """ if len(transaction_hash) != 32: raise ValueError( ...

[ "def", "poll", "(", "self", ",", "transaction_hash", ":", "bytes", ",", ")", ":", "if", "len", "(", "transaction_hash", ")", "!=", "32", ":", "raise", "ValueError", "(", "'transaction_hash must be a 32 byte hash'", ",", ")", "transaction_hash", "=", "encode_hex"...

35.895833

0.00226

def _strategy(codes, context): """ Convert SRE regex parse tree to strategy that generates strings matching that regex represented by that parse tree. `codes` is either a list of SRE regex elements representations or a particular element representation. Each element is a tuple of element code (as s...

[ "def", "_strategy", "(", "codes", ",", "context", ")", ":", "if", "not", "isinstance", "(", "codes", ",", "tuple", ")", ":", "# List of codes", "strategies", "=", "[", "]", "i", "=", "0", "while", "i", "<", "len", "(", "codes", ")", ":", "if", "cod...

36.225

0.001847

def readList(self): """ Read a C{list} from the data stream. """ obj = [] self.context.addObject(obj) l = self.stream.read_ulong() for i in xrange(l): obj.append(self.readElement()) return obj

[ "def", "readList", "(", "self", ")", ":", "obj", "=", "[", "]", "self", ".", "context", ".", "addObject", "(", "obj", ")", "l", "=", "self", ".", "stream", ".", "read_ulong", "(", ")", "for", "i", "in", "xrange", "(", "l", ")", ":", "obj", ".",...

21.583333

0.011111

def load_umls(): """UMLs Dataset. The data consists of information about a 135 Graph and the relations between their nodes given as a DataFrame with three columns, source, target and type, indicating which nodes are related and with which type of link. The target is a 1d numpy binary integer array ...

[ "def", "load_umls", "(", ")", ":", "dataset_path", "=", "_load", "(", "'umls'", ")", "X", "=", "_load_csv", "(", "dataset_path", ",", "'data'", ")", "y", "=", "X", ".", "pop", "(", "'label'", ")", ".", "values", "graph", "=", "nx", ".", "Graph", "(...

37.470588

0.009188

def make_flatten(decl_or_decls): """ Converts tree representation of declarations to flatten one. :param decl_or_decls: reference to list of declaration's or single declaration :type decl_or_decls: :class:`declaration_t` or [ :class:`declaration_t` ] :rtype: [ all internal declarations ] ...

[ "def", "make_flatten", "(", "decl_or_decls", ")", ":", "def", "proceed_single", "(", "decl", ")", ":", "answer", "=", "[", "decl", "]", "if", "not", "isinstance", "(", "decl", ",", "scopedef_t", ")", ":", "return", "answer", "for", "elem", "in", "decl", ...

28.16129

0.001107

def excess_drawdown_idx(self, benchmark, method="caer"): """Excess drawdown index; TSeries of excess drawdowns. There are several ways of computing this metric. For highly volatile returns, the `method` specified will have a non-negligible effect on the result. Parameters ...

[ "def", "excess_drawdown_idx", "(", "self", ",", "benchmark", ",", "method", "=", "\"caer\"", ")", ":", "# TODO: plot these (compared) in docs.", "if", "isinstance", "(", "method", ",", "(", "int", ",", "float", ")", ")", ":", "method", "=", "[", "\"caer\"", ...

35.758621

0.000939

def _migrate_subresources(parent, migrations): """ Migrate a resource's subresources :param parent: the parent perch.Document instance :param migrations: the migrations for a resource """ for subresource, resource_migrations in migrations.items(): parent = _migrate_subresource( ...

[ "def", "_migrate_subresources", "(", "parent", ",", "migrations", ")", ":", "for", "subresource", ",", "resource_migrations", "in", "migrations", ".", "items", "(", ")", ":", "parent", "=", "_migrate_subresource", "(", "subresource", ",", "parent", ",", "resourc...

26.866667

0.002398

def backward_word_extend_selection(self, e): # u"""Move back to the start of the current or previous word. Words are composed of letters and digits.""" self.l_buffer.backward_word_extend_selection(self.argument_reset) self.finalize()

[ "def", "backward_word_extend_selection", "(", "self", ",", "e", ")", ":", "# \r", "self", ".", "l_buffer", ".", "backward_word_extend_selection", "(", "self", ".", "argument_reset", ")", "self", ".", "finalize", "(", ")" ]

53.2

0.014815

def get_bucket_name(self): '''get or return the s3 bucket name. If not yet defined via an environment variable or setting, we create a name with the pattern. sregistry-<robotnamer>-<1234> You can use the following environment variables to determine interacti...

[ "def", "get_bucket_name", "(", "self", ")", ":", "# Get bucket name", "bucket_name", "=", "'sregistry-%s'", "%", "RobotNamer", "(", ")", ".", "generate", "(", ")", "self", ".", "bucket_name", "=", "self", ".", "_get_and_update_setting", "(", "'SREGISTRY_S3_BUCKET'...

45.2

0.008671