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def _line_opt(self): """Perform a line search along the current direction""" direction = self.search_direction.direction if self.constraints is not None: try: direction = self.constraints.project(self.x, direction) except ConstraintError: s...
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def plot_monthly_returns_heatmap(returns, ax=None, **kwargs): """ Plots a heatmap of returns by month. Parameters ---------- returns : pd.Series Daily returns of the strategy, noncumulative. - See full explanation in tears.create_full_tear_sheet. ax : matplotlib.Axes, optional ...
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def load(filepath=None, filecontent=None): """ Read the json file located at `filepath` If `filecontent` is specified, its content will be json decoded and loaded instead. Usage: config.load(filepath=None, filecontent=None): Provide either a filepath or a json string """ conf =...
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def user_search_results(self): """ Add [member] to a user title if user is a member of current workspace """ results = super(SharingView, self).user_search_results() ws = IWorkspace(self.context) roles_mapping = ws.available_groups roles = roles_mapping.get(self.c...
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def generate_parser(): """Returns a parser configured with sub-commands and arguments.""" parser = argparse.ArgumentParser( description=constants.TACL_DESCRIPTION, formatter_class=ParagraphFormatter) subparsers = parser.add_subparsers(title='subcommands') generate_align_subparser(subpars...
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def createPolyline(self, points, strokewidth=1, stroke='black'): """ Creates a Polyline @type points: string in the form "x1,y1 x2,y2 x3,y3" @param points: all points relevant to the polygon @type strokewidth: string or int @param strokewidth: width of the pen used to...
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def find_window_id(pattern, method='mru', error='raise'): """ xprop -id 0x00a00007 | grep "WM_CLASS(STRING)" """ import utool as ut winid_candidates = XCtrl.findall_window_ids(pattern) if len(winid_candidates) == 0: if error == 'raise': availab...
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def is_sensor(self, sensorid, child_id=None): """Return True if a sensor and its child exist.""" ret = sensorid in self.sensors if not ret: _LOGGER.warning('Node %s is unknown', sensorid) if ret and child_id is not None: ret = child_id in self.sensors[sensorid].ch...
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def plot(self,t=0.,min=-15.,max=15,ns=21,savefilename=None): """ NAME: plot PURPOSE: plot the potential INPUT: t - time to evaluate the potential at min - minimum x max - maximum x ns - grid in x savefi...
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def _preallocate_samples(self): """Preallocate samples for faster adaptive sampling. """ self.prealloc_samples_ = [] for i in range(self.num_prealloc_samples_): self.prealloc_samples_.append(self.sample())
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def create_without_data(cls, id_): """ 根据 objectId 创建一个 leancloud.Object,代表一个服务器上已经存在的对象。可以调用 fetch 方法来获取服务器上的数据 :param id_: 对象的 objectId :type id_: string_types :return: 没有数据的对象 :rtype: Object """ if cls is Object: raise RuntimeError('can not...
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def on_copy_local(self, pair): """Called when the local resource should be copied to remote.""" status = pair.remote_classification self._log_action("copy", status, ">", pair.local)
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def dig(obj, *keys): """ Return obj[key_1][key_2][...] for each key in keys, or None if any key in the chain is not found So, given this `obj`: { "banana": { "cream": "pie" } } dig(obj, "banana") -> {"cream": "pie"} dig(obj, "banana", "cream") -> "pie" ...
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def plot_meshes(self, ax=None, marker='+', color='blue', outlines=False, **kwargs): """ Plot the low-resolution mesh boxes on a matplotlib Axes instance. Parameters ---------- ax : `matplotlib.axes.Axes` instance, optional If `None`, then ...
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def richTextLabel(self): """ Returns the label that is used for drawing the rich text to this button. :return <QLabel> """ if not self._richTextLabel: self._richTextLabel = QLabel(self) self._richTextLabel.installEventFilter(self) ...
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def provides(self, call_name): """Provide a call. The call acts as a stub -- no error is raised if it is not called.:: >>> session = Fake('session').provides('open').provides('close') >>> import fudge >>> fudge.clear_expectations() # from any previously declared fak...
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def save_model(self): ''' Saves all of the de-trending information to disk in an `npz` file and saves the DVS as a `pdf`. ''' # Save the data log.info("Saving data to '%s.npz'..." % self.name) d = dict(self.__dict__) d.pop('_weights', None) d.pop...
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def get_translations(self, locale): """ Get translation dictionary Returns a dictionary for locale or raises an exception if such can't be located. If a dictionary for locale was previously loaded returns that, otherwise goes through registered locations and merges any fo...
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def _message_to_entity(msg, modelclass): """Recursive helper for _to_base_type() to convert a message to an entity. Args: msg: A Message instance. modelclass: A Model subclass. Returns: An instance of modelclass. """ ent = modelclass() for prop_name, prop in modelclass._properties.iteritems():...
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def tabular(client, records): """Format dataset files with a tabular output. :param client: LocalClient instance. :param records: Filtered collection. """ from renku.models._tabulate import tabulate echo_via_pager( tabulate( records, headers=OrderedDict(( ...
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def tt_qr(X, left_to_right=True): """ Orthogonalizes a TT tensor from left to right or from right to left. :param: X - thensor to orthogonalise :param: direction - direction. May be 'lr/LR' or 'rl/RL' for left/right orthogonalization :return: X_orth, R - orthogonal tensor and right (...
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def ingest(resource, xpath=".//tei:cRefPattern"): """ Ingest a resource and store data in its instance :param resource: XML node cRefPattern or list of them in ASC hierarchy order (deepest to highest, eg. lines to poem to book) :type resource: [lxml.etree._Element] :param xpath: XPath t...
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def get_qiniu_config(name, default=None): """ Get configuration variable from environment variable or django setting.py """ config = os.environ.get(name, getattr(settings, name, default)) if config is not None: if isinstance(config, six.string_types): return config.strip() ...
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def _urlparse_qs(url): """ Parse a URL query string and return the components as a dictionary. Based on the cgi.parse_qs method.This is a utility function provided with urlparse so that users need not use cgi module for parsing the url query string. Arguments: :type url: str :param ur...
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def load(path, shuffle=True): """ Note: If you found deserialization being the bottleneck, you can use :class:`LMDBData` as the reader and run deserialization as a mapper in parallel. """ df = LMDBData(path, shuffle=shuffle) return MapData(df, lambda dp: l...
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def get_deposits(self, account_id, **params): """https://developers.coinbase.com/api/v2#list-deposits""" response = self._get('v2', 'accounts', account_id, 'deposits', params=params) return self._make_api_object(response, Deposit)
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def cube(target, pore_diameter='pore.diameter', throat_area='throat.area'): r""" Calculates internal surface area of pore bodies assuming they are cubes then subtracts the area of the neighboring throats. Parameters ---------- target : OpenPNM Object The object for which these values ar...
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def ssn(self, min_age=18, max_age=90): """ Returns a 10 digit Swedish SSN, "Personnummer". It consists of 10 digits in the form YYMMDD-SSGQ, where YYMMDD is the date of birth, SSS is a serial number and Q is a control character (Luhn checksum). http://en.wikipedia.org/w...
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def main(from_lang, to_lang, provider, secret_access_key, output_only, text): """ Python command line tool to make on line translations \b Example: \b \t $ translate-cli -t zh the book is on the table \t 碗是在桌子上。 \b Available languages: \b \t https://en.wikipedia.org/wiki/IS...
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def image_meta_set(self, image_id=None, name=None, **kwargs): # pylint: disable=C0103 ''' Set image metadata ''' nt_ks = self.compute_conn if name: for image in nt_ks.images.list(): ...
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def get_palette(samples, options, return_mask=False, kmeans_iter=40): '''Extract the palette for the set of sampled RGB values. The first palette entry is always the background color; the rest are determined from foreground pixels by running K-means clustering. Returns the palette, as well as a mask corresponding ...
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def prepare_subprocess_cmd(subprocess_cmd): """Prepares a subprocess command by running --helpfull and masking flags. Args: subprocess_cmd: List[str], what would be passed into subprocess.call() i.e. ['python', 'train.py', '--flagfile=flags'] Returns: ['python', 'train.py', '--...
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def escape_latex(text): r"""Escape characters of given text. This function takes the given text and escapes characters that have a special meaning in LaTeX: # $ % ^ & _ { } ~ \ """ text = unicode(text.decode('utf-8')) CHARS = { '&': r'\&', '%': r'\%', '$': r'\$', ...
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def p_top(self, p): "top : objectlist" if DEBUG: self.print_p(p) p[0] = self.objectlist_flat(p[1], True)
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def list(self): """Get a list of the names of the functions stored in this database.""" return [x["_id"] for x in self._db.system.js.find(projection=["_id"])]
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def write_text(filename, tracklisting): """Handle writing tracklisting to text.""" print("Saving text file.") try: write_listing_to_textfile(filename + '.txt', tracklisting) except IOError: # if all else fails, just print listing print("Cannot write text file to path: {}".format(...
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def f_to_dict(self, copy=True): """Returns annotations as dictionary. :param copy: Whether to return a shallow copy or the real thing (aka _dict). """ if copy: return self._dict.copy() else: return self._dict
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def inputs(eval_data, data_dir, batch_size): """Construct input for CIFAR evaluation using the Reader ops. Args: eval_data: bool, indicating if one should use the train or eval data set. data_dir: Path to the CIFAR-10 data directory. batch_size: Number of images per batch. Returns: images: Image...
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def use_comparative_gradebook_view(self): """Pass through to provider GradeSystemGradebookSession.use_comparative_gradebook_view""" self._gradebook_view = COMPARATIVE # self._get_provider_session('grade_system_gradebook_session') # To make sure the session is tracked for session in self....
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def default_value(self, type_name): ''' Obtain the default value for some *type name*. ''' uname = type_name.upper() if uname == 'BOOLEAN': return False elif uname == 'INTEGER': return 0 elif uname == 'REAL': ...
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def shelf_from_config(config, **default_init): """Get a `Shelf` instance dynamically based on config. `config` is a dictionary containing ``shelf_*`` keys as defined in :mod:`birding.config`. """ shelf_cls = import_name(config['shelf_class'], default_ns='birding.shelf') init = {} init.updat...
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def _CurrentAuditLog(): """Get the rdfurn of the current audit log.""" now_sec = rdfvalue.RDFDatetime.Now().AsSecondsSinceEpoch() rollover_seconds = AUDIT_ROLLOVER_TIME.seconds # This gives us a filename that only changes every # AUDIT_ROLLOVER_TIfilME seconds, but is still a valid timestamp. current_log = ...
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def network_create_func(self, net): """Create network in database and dcnm :param net: network dictionary """ net_id = net['id'] net_name = net.get('name') network_db_elem = self.get_network(net_id) # Check if the source of network creation is FW and if yes, skip ...
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def load_aggregate(args): """Load YAML and JSON configs and begin creating / updating , aggregating and pushing the repos (deprecated in favor or run())""" repos = load_config(args.config, args.expand_env) dirmatch = args.dirmatch for repo_dict in repos: r = Repo(**repo_dict) logger....
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def from_independent_strains(cls, strains, stresses, eq_stress=None, vasp=False, tol=1e-10): """ Constructs the elastic tensor least-squares fit of independent strains Args: strains (list of Strains): list of strain objects to fit stresses...
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def get_participants_for_section(section, person=None): """ Returns a list of gradebook participants for the passed section and person. """ section_label = encode_section_label(section.section_label()) url = "/rest/gradebook/v1/section/{}/participants".format(section_label) headers = {} if ...
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def offsets(self): """ Returns the offsets values of x, y, z as a numpy array """ return np.array([self.x_offset, self.y_offset, self.z_offset])
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def pdf(self, x_test): """ Computes the probability density function at all x_test """ N,D = self.data.shape x_test = np.asfortranarray(x_test) x_test = x_test.reshape([-1, D]) pdfs = self._individual_pdfs(x_test) #import pdb; pdb.set_trace() # combine values based on fully_dimensional! if self....
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def _process_content_streams(*, pdf, container, shorthand=None): """Find all individual instances of images drawn in the container Usually the container is a page, but it may also be a Form XObject. On a typical page images are stored inline or as regular images in an XObject. Form XObjects may i...
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def getlist(self, key: 'Entity') -> Sequence[object]: r"""Return all values associated to the given ``key`` property in sequence. :param key: The property entity. :type key: :class:`Entity` :return: A sequence of all values associated to the given ``key`` proper...
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def parse_response(self, response, header=None): """Parses the response message. The following graph shows the structure of response messages. :: +----------+ +--+ data sep +<-+ ...
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def set_ip_port(self, ip, port): '''set ip and port''' self.address = ip self.port = port self.stop() self.start()
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def backup_file(*, file, host): """ Backup a file on S3 :param file: full path to the file to be backed up :param host: this will be used to locate the file on S3 :raises TypeError: if an argument in kwargs does not have the type expected :raises ValueError: if an argument within kwargs has an ...
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def _format_pr(pr_): ''' Helper function to format API return information into a more manageable and useful dictionary for pull request information. pr_ The pull request to format. ''' ret = {'id': pr_.get('id'), 'pr_number': pr_.get('number'), 'state': pr_.get('st...
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def resend_dcv(gandi, resource): """ Resend the DCV mail. Resource can be a CN or an ID """ ids = gandi.certificate.usable_ids(resource) if len(ids) > 1: gandi.echo('Will not update, %s is not precise enough.' % resource) gandi.echo(' * cert : ' + '\n * cert : ...
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def parse_set_header(value, on_update=None): """Parse a set-like header and return a :class:`~werkzeug.datastructures.HeaderSet` object: >>> hs = parse_set_header('token, "quoted value"') The return value is an object that treats the items case-insensitively and keeps the order of the items: ...
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def _get_format(format, fname, inp=None): """Try to guess markup format of given input. Args: format: explicit format override to use fname: name of file, if a file was used to read `inp` inp: optional bytestring to guess format of (can be None, if markup format is to be gue...
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async def release( self, *, comment: str = None, erase: bool = None, secure_erase: bool = None, quick_erase: bool = None, wait: bool = False, wait_interval: int = 5): """ Release the machine. :param comment: Reason machine was released. :type comment:...
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def mean_interval(data, alpha=_alpha): """ Interval assuming gaussian posterior. """ mean =np.mean(data) sigma = np.std(data) scale = scipy.stats.norm.ppf(1-alpha/2.) return interval(mean,mean-scale*sigma,mean+scale*sigma)
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def get_tour(index): """ This function generates a list of tours. The index argument is used to retrieve a particular tour. If None is passed, it will return the full list of tours. If instead -1 is given, this function will return a test tour To add more tours a new variable needs...
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def Set(self, value, context=None): """Receives a value for the object and some context on its source.""" if self.has_error: return if self.value is None: self.value = value self._context["old_value"] = value self._context.update({"old_" + k: v for k, v in context.items()}) elif self.v...
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def wait(self, sensor_name, condition_or_value, timeout=5.0, quorum=None, max_grace_period=1.0): """Wait for sensor present on all group clients to satisfy a condition. Parameters ---------- sensor_name : string The name of the sensor to check condition_...
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def get_alert_log(self, current=0, minimum=0, maximum=100, header="", action_key=None): """Get the alert log.""" return self.get_alert(current=current, minimum=mini...
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def skopeo_pull(self): """ Pull image from Docker to local Docker daemon using skopeo :return: pulled image """ return self.copy(self.name, self.tag, SkopeoTransport.DOCKER, SkopeoTransport.DOCKER_DAEMON)\ .using_transport(SkopeoTransport.DOCKER_DAEM...
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def filter(self, u): """Filter the valid identities for this matcher. :param u: unique identity which stores the identities to filter :returns: a list of identities valid to work with this matcher. :raises ValueError: when the unique identity is not an instance of UniqueId...
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def convex_cardinality_relaxed(f, epsilon=1e-5): """Transform L1-norm optimization function into cardinality optimization. The given function must optimize a convex problem with a weighted L1-norm as the objective. The transformed function will apply the iterated weighted L1 heuristic to approximately ...
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def create_user(self, user_name, initial_password): """Create a new user with an initial password via provisioning API. It is not an error, if the user already existed before. If you get back an error 999, then the provisioning API is not enabled. :param user_name: name of user to be c...
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def reset_training_state(self, dones, batch_info): """ A hook for a model to react when during training episode is finished """ for idx, done in enumerate(dones): if done > 0.5: self.processes[idx].reset()
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def matrix_exponent(M): """ The function computes matrix exponent and handles some special cases """ if (M.shape[0] == 1): # 1*1 matrix Mexp = np.array( ((np.exp(M[0,0]) ,),) ) else: # matrix is larger method = None try: Mexp = linalg.expm(M) method ...
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def getent(refresh=False, root=None): ''' Return info on all groups refresh Force a refresh of group information root Directory to chroot into CLI Example: .. code-block:: bash salt '*' group.getent ''' if 'group.getent' in __context__ and not refresh: ...
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def rename_attributes(element, attrs): """ Renames the attributes of the element. Accepts the element and a dictionary of string values. The keys are the original names, and their values will be the altered names. This method treats all attributes as optional and will not fail on missing attributes....
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def element_name_and_type_by_href(href): """ Retrieve the element name and type of element based on the href. You may have a href that is within another element reference and want more information on that reference. :param str href: href of element :return: tuple (name, type) """ if hre...
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def target_range(self): """Get the range covered on the target/reference strand :returns: Genomic range of the target strand :rtype: GenomicRange """ a = self.alignment_ranges return GenomicRange(a[0][0].chr,a[0][0].start,a[-1][0].end)
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def read(cls, source, names=None, format=None, **kwargs): """Read segments from file into a `DataQualityDict` Parameters ---------- source : `str` path of file to read format : `str`, optional source format identifier. If not given, the format will be ...
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def paint( self, painter, option, widget ): """ Paints this item on the painter. :param painter | <QPainter> option | <QStyleOptionGraphicsItem> widget | <QWidget> """ if ( self._rebuildRequired ): self....
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def get_all_access_keys(user_name, marker=None, max_items=None, region=None, key=None, keyid=None, profile=None): ''' Get all access keys from a user. .. versionadded:: 2015.8.0 CLI Example: .. code-block:: bash salt myminion boto_iam.get_all_access_keys myuser ...
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def applet_list_projects(object_id, input_params={}, always_retry=True, **kwargs): """ Invokes the /applet-xxxx/listProjects API method. For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Cloning#API-method%3A-%2Fclass-xxxx%2FlistProjects """ return DXHTTPRequest('/%s/listProjec...
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def handle_request(path): """ Return the current status. """ accept = bottle.request.get_header("accept", default="text/plain") bottle.response.status = 200 try: if "text/html" in accept: ret = CURRENT_STATE.as_html(path=path) bottle.response.content_type = "te...
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def lxqstr(string, qchar, first): """ Lex (scan) a quoted string. http://naif.jpl.nasa.gov/pub/naif/toolkit_docs/C/cspice/lxqstr_c.html :param string: String to be scanned. :type string: str :param qchar: Quote delimiter character. :type qchar: char (string of one char) :param first: C...
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def _get_date(data, position, dummy, opts): """Decode a BSON datetime to python datetime.datetime.""" end = position + 8 millis = _UNPACK_LONG(data[position:end])[0] diff = ((millis % 1000) + 1000) % 1000 seconds = (millis - diff) / 1000 micros = diff * 1000 if opts.tz_aware: return ...
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def savgol_fit_magseries(times, mags, errs, period, windowlength=None, polydeg=2, sigclip=30.0, plotfit=False, magsarefluxes=False, verbose=True): '''Fit a Savitzky-...
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def create(self, name, **kwargs): """ Create new role http://www.keycloak.org/docs-api/3.4/rest-api/index.html #_roles_resource :param str name: Name for the role :param str description: (optional) :param str id: (optional) :param bool client_role: (opti...
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def list_subnetpools(self, retrieve_all=True, **_params): """Fetches a list of all subnetpools for a project.""" return self.list('subnetpools', self.subnetpools_path, retrieve_all, **_params)
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def showGridRows( self ): """ Returns whether or not this delegate should draw rows when rendering \ the grid. :return <bool> """ delegate = self.itemDelegate() if ( isinstance(delegate, XTreeWidgetDelegate) ): return delegate.sho...
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def check_archive(schema, rev_id, namespace=None, title=None, timestamp=None, radius=defaults.RADIUS, before=None, window=None): """ Checks the revert status of an archived revision (from a deleted page). With this method, you can determine whether an edit is a 'reverting...
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def data_corners(data, data_filter = None): """! @brief Finds maximum and minimum corner in each dimension of the specified data. @param[in] data (list): List of points that should be analysed. @param[in] data_filter (list): List of indexes of the data that should be analysed, ...
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def parse(duration, context=None): """ parse the duration string which contains a human readable duration and return a datetime.timedelta object representing that duration arguments: duration - the duration string following a notation like so: "1 hour" "1 m...
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def parse_home_face_offs(self): """ Parse only the home faceoffs :returns: ``self`` on success, ``None`` otherwise """ self.__set_team_docs() self.face_offs['home'] = FaceOffRep.__read_team_doc(self.__home_doc) return self
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def auto_authorize(scope, password=[None]): """ Executes a command on the remote host that causes an authorization procedure to be started, then authorizes using the given password in the same way in which authorize() works. Depending on the detected operating system of the remote host the follo...
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def query_sum(queryset, field): """ Let the DBMS perform a sum on a queryset """ return queryset.aggregate(s=models.functions.Coalesce(models.Sum(field), 0))['s']
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def synonyms(self): """A ranked list of all the names associated with this Compound. Requires an extra request. Result is cached. """ if self.cid: results = get_json(self.cid, operation='synonyms') return results['InformationList']['Information'][0]['Synonym'] if...
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def timebinlc_worker(task): ''' This is a parallel worker for the function below. Parameters ---------- task : tuple This is of the form:: task[0] = lcfile task[1] = binsizesec task[3] = {'outdir','lcformat','lcformatdir', 'timeco...
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def tile_id_in_direction(from_tile_id, direction): """ Variant on direction_to_tile. Returns None if there's no tile there. :param from_tile_id: tile identifier, int :param direction: str :return: tile identifier, int or None """ coord_from = tile_id_to_coord(from_tile_id) for offset, d...
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def update_shipment(self, resource_id, data): """Update the tracking information of a shipment.""" return Shipments(self.client).on(self).update(resource_id, data)
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def get_send_command(self, send): """Internal helper function to get command that's really sent """ shutit_global.shutit_global_object.yield_to_draw() if send is None: return send cmd_arr = send.split() if cmd_arr and cmd_arr[0] in ('md5sum','sed','head'): newcmd = self.get_command(cmd_arr[0]) send...
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def get_dataset(catalog, identifier=None, title=None): """Devuelve un Dataset del catálogo.""" msg = "Se requiere un 'identifier' o 'title' para buscar el dataset." assert identifier or title, msg catalog = read_catalog_obj(catalog) # búsqueda optimizada por identificador if identifier: ...
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def get_tree(self, list_of_keys): """ gettree will extract the value from a nested tree INPUT list_of_keys: a list of keys ie. ['key1', 'key2'] USAGE >>> # Access the value for key2 within the nested dictionary >>> adv_dict({'key1': {'key2': 'value'}}).gettree(['key1', 'key...
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def _fetch_remote_json(service_url, params=None, use_http_post=False): """Retrieves a JSON object from a URL.""" if not params: params = {} request_url, response = _fetch_remote(service_url, params, use_http_post) if six.PY3: str_response = response.read().decode('utf-8') return...
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def parse_annotations( self, annotation_file, genes, db_sel='UniProtKB', select_evidence=None, exclude_evidence=None, exclude_ref=None, strip_species=False, ignore_case=False): """Parse a GO annotation file (in GAF 2.0 format). GO annotation files can be downloaded f...
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def ransohoff_snap_off(target, shape_factor=2.0, wavelength=5e-6, require_pair=False, surface_tension='pore.surface_tension', contact_angle='pore.contact_angle', diameter='throat.dia...
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