kejian/codesearchnet-python-rebalanced · Datasets at Hugging Face

text stringlengths 75 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 0.18
def compose(self, sources, client=None): """Concatenate source blobs into this one. If :attr:`user_project` is set on the bucket, bills the API request to that project. :type sources: list of :class:`Blob` :param sources: blobs whose contents will be composed into this blob. ...	[ "def", "compose", "(", "self", ",", "sources", ",", "client", "=", "None", ")", ":", "client", "=", "self", ".", "_require_client", "(", "client", ")", "query_params", "=", "{", "}", "if", "self", ".", "user_project", "is", "not", "None", ":", "query_p...	36.28125	0.001678
def strip_agent_context(stmts_in, **kwargs): """Strip any context on agents within each statement. Parameters ---------- stmts_in : list[indra.statements.Statement] A list of statements whose agent context should be stripped. save : Optional[str] The name of a pickle file to save th...	[ "def", "strip_agent_context", "(", "stmts_in", ",", "", "", "kwargs", ")", ":", "logger", ".", "info", "(", "'Stripping agent context on %d statements...'", "%", "len", "(", "stmts_in", ")", ")", "stmts_out", "=", "[", "]", "for", "st", "in", "stmts_in", "...	31.40625	0.000965
def SetParametros(self, cuit, token, sign): "Establece un parámetro general" self.Token = token self.Sign = sign self.Cuit = cuit return True	[ "def", "SetParametros", "(", "self", ",", "cuit", ",", "token", ",", "sign", ")", ":", "self", ".", "Token", "=", "token", "self", ".", "Sign", "=", "sign", "self", ".", "Cuit", "=", "cuit", "return", "True" ]	29.333333	0.01105
def destroy(name, conn=None, call=None, kwargs=None): ''' Destroy a VM CLI Examples: .. code-block:: bash salt-cloud -d myminion salt-cloud -a destroy myminion service_name=myservice ''' if call == 'function': raise SaltCloudSystemExit( 'The destroy action ...	[ "def", "destroy", "(", "name", ",", "conn", "=", "None", ",", "call", "=", "None", ",", "kwargs", "=", "None", ")", ":", "if", "call", "==", "'function'", ":", "raise", "SaltCloudSystemExit", "(", "'The destroy action must be called with -d, --destroy, '", "'-a ...	33.637931	0.001743
def google(self, qs): """CSV format suitable for importing into google GMail""" csvf = writer(sys.stdout) csvf.writerow(['Name', 'Email']) for ent in qs: csvf.writerow([full_name(**ent), ent['email']])	[ "def", "google", "(", "self", ",", "qs", ")", ":", "csvf", "=", "writer", "(", "sys", ".", "stdout", ")", "csvf", ".", "writerow", "(", "[", "'Name'", ",", "'Email'", "]", ")", "for", "ent", "in", "qs", ":", "csvf", ".", "writerow", "(", "[", "...	40	0.008163
def build_url (self): """ Call super.build_url(), set default telnet port and initialize the login credentials. """ super(TelnetUrl, self).build_url() # default port if self.port is None: self.port = 23 # set user/pass self.user, self.p...	[ "def", "build_url", "(", "self", ")", ":", "super", "(", "TelnetUrl", ",", "self", ")", ".", "build_url", "(", ")", "# default port", "if", "self", ".", "port", "is", "None", ":", "self", ".", "port", "=", "23", "# set user/pass", "self", ".", "user", ...	31.272727	0.008475
def ScaleSmaller(self): """Decreases the zoom of the graph one step(0.1 units).""" newfactor = self._zoomfactor - 0.1 if float(newfactor) > 0 and float(newfactor) < self._MAX_ZOOM: self._zoomfactor = newfactor	[ "def", "ScaleSmaller", "(", "self", ")", ":", "newfactor", "=", "self", ".", "_zoomfactor", "-", "0.1", "if", "float", "(", "newfactor", ")", ">", "0", "and", "float", "(", "newfactor", ")", "<", "self", ".", "_MAX_ZOOM", ":", "self", ".", "_zoomfactor...	44.6	0.008811
def _get_manager(cluster_info, host, executor_id): """Returns this executor's "singleton" instance of the multiprocessing.Manager, reconnecting per python-worker if needed. Args: :cluster_info: cluster node reservations :host: host IP address :executor_id: unique id per executor (created during initial...	[ "def", "_get_manager", "(", "cluster_info", ",", "host", ",", "executor_id", ")", ":", "for", "node", "in", "cluster_info", ":", "if", "node", "[", "'host'", "]", "==", "host", "and", "node", "[", "'executor_id'", "]", "==", "executor_id", ":", "addr", "...	40.074074	0.01083
def interact(banner=None, readfunc=None, local=None): """Closely emulate the interactive Python interpreter. This is a backwards compatible interface to the InteractiveConsole class. When readfunc is not specified, it attempts to import the readline module to enable GNU readline if it is available. ...	[ "def", "interact", "(", "banner", "=", "None", ",", "readfunc", "=", "None", ",", "local", "=", "None", ")", ":", "console", "=", "InteractiveConsole", "(", "local", ")", "if", "readfunc", "is", "not", "None", ":", "console", ".", "raw_input", "=", "re...	33.391304	0.001266
def rspr(self, disallow_sibling_sprs=False, keep_entire_edge=False, rescale=False): """ Random SPR, with prune and regraft edges chosen randomly, and lengths drawn uniformly from the available edge lengths. N1: disallow_sibling_sprs prevents sprs that don't alter the topology ...	[ "def", "rspr", "(", "self", ",", "disallow_sibling_sprs", "=", "False", ",", "keep_entire_edge", "=", "False", ",", "rescale", "=", "False", ")", ":", "starting_length", "=", "self", ".", "tree", ".", "_tree", ".", "length", "(", ")", "excl", "=", "[", ...	41.658537	0.002288
def set_exception(self, exception): ''' Set an exception to Future object, wake up all the waiters :param exception: exception to set ''' if hasattr(self, '_result'): raise ValueError('Cannot set the result twice') self._result = None self._ex...	[ "def", "set_exception", "(", "self", ",", "exception", ")", ":", "if", "hasattr", "(", "self", ",", "'_result'", ")", ":", "raise", "ValueError", "(", "'Cannot set the result twice'", ")", "self", ".", "_result", "=", "None", "self", ".", "_exception", "=", ...	36.909091	0.012019
def Aitken(s): """Accelerate the convergence of the a series using Aitken's delta-squared process (SCIP calls it Euler). """ def accel(): s0, s1, s2 = s >> item[:3] while 1: yield s2 - (s2 - s1)*2 / (s0 - 2s1 + s2) s0, s1, s2 = s1, s2, next(s) return accel()	[ "def", "Aitken", "(", "s", ")", ":", "def", "accel", "(", ")", ":", "s0", ",", "s1", ",", "s2", "=", "s", ">>", "item", "[", ":", "3", "]", "while", "1", ":", "yield", "s2", "-", "(", "s2", "-", "s1", ")", "**", "2", "/", "(", "s0", "-"...	26.6	0.036364
def syslog(server, enable=True, host=None, admin_username=None, admin_password=None, module=None): ''' Configure syslog remote logging, by default syslog will automatically be enabled if a server is specified. However, if you want to disable syslog you will need to specify a server followed b...	[ "def", "syslog", "(", "server", ",", "enable", "=", "True", ",", "host", "=", "None", ",", "admin_username", "=", "None", ",", "admin_password", "=", "None", ",", "module", "=", "None", ")", ":", "if", "enable", "and", "__execute_cmd", "(", "'config -g c...	43.6875	0.0007
def except_handle(tokens): """Process except statements.""" if len(tokens) == 1: errs, asname = tokens[0], None elif len(tokens) == 2: errs, asname = tokens else: raise CoconutInternalException("invalid except tokens", tokens) out = "except " if "list" in tokens: ...	[ "def", "except_handle", "(", "tokens", ")", ":", "if", "len", "(", "tokens", ")", "==", "1", ":", "errs", ",", "asname", "=", "tokens", "[", "0", "]", ",", "None", "elif", "len", "(", "tokens", ")", "==", "2", ":", "errs", ",", "asname", "=", "...	26.9375	0.002242
def get_type_data(name): """Return dictionary representation of type. Can be used to initialize primordium.type.primitives.Type """ name = name.upper() try: return { 'authority': 'okapia.net', 'namespace': 'string match types', 'identifier': name, ...	[ "def", "get_type_data", "(", "name", ")", ":", "name", "=", "name", ".", "upper", "(", ")", "try", ":", "return", "{", "'authority'", ":", "'okapia.net'", ",", "'namespace'", ":", "'string match types'", ",", "'identifier'", ":", "name", ",", "'domain'", "...	33.25	0.001462
def save(self, designName=""): # type: (ASaveDesign) -> None """Save the current design to file""" self.try_stateful_function( ss.SAVING, ss.READY, self.do_save, designName)	[ "def", "save", "(", "self", ",", "designName", "=", "\"\"", ")", ":", "# type: (ASaveDesign) -> None", "self", ".", "try_stateful_function", "(", "ss", ".", "SAVING", ",", "ss", ".", "READY", ",", "self", ".", "do_save", ",", "designName", ")" ]	41	0.014354
def issueQueingServiceJobs(self): """Issues any queuing service jobs up to the limit of the maximum allowed.""" while len(self.serviceJobsToBeIssued) > 0 and self.serviceJobsIssued < self.config.maxServiceJobs: self.issueJob(self.serviceJobsToBeIssued.pop()) self.serviceJobsIssue...	[ "def", "issueQueingServiceJobs", "(", "self", ")", ":", "while", "len", "(", "self", ".", "serviceJobsToBeIssued", ")", ">", "0", "and", "self", ".", "serviceJobsIssued", "<", "self", ".", "config", ".", "maxServiceJobs", ":", "self", ".", "issueJob", "(", ...	72.625	0.008503
def _unicode(value): """Converts a string argument to a unicode string. If the argument is already a unicode string or None, it is returned unchanged. Otherwise it must be a byte string and is decoded as utf8. """ if isinstance(value, _TO_UNICODE_TYPES): return value if not isinstance(...	[ "def", "_unicode", "(", "value", ")", ":", "if", "isinstance", "(", "value", ",", "_TO_UNICODE_TYPES", ")", ":", "return", "value", "if", "not", "isinstance", "(", "value", ",", "bytes_type", ")", ":", "raise", "TypeError", "(", "\"Expected bytes, unicode, or ...	35.692308	0.002101
def s2p(self): """Return 2 proton separation energy""" M_P = 7.28897050 # proton mass excess in MeV f = lambda parent, daugther: -parent + daugther + 2 * M_P return self.derived('s2p', (-2, 0), f)	[ "def", "s2p", "(", "self", ")", ":", "M_P", "=", "7.28897050", "# proton mass excess in MeV", "f", "=", "lambda", "parent", ",", "daugther", ":", "-", "parent", "+", "daugther", "+", "2", "*", "M_P", "return", "self", ".", "derived", "(", "'s2p'", ",", ...	46.4	0.012712
def matrix2cube(data_matrix, im_shape): r"""Matrix to Cube This method transforms a 2D matrix to a 3D cube Parameters ---------- data_matrix : np.ndarray Input data cube, 2D array im_shape : tuple 2D shape of the individual images Returns ------- np.ndarray 3D cube...	[ "def", "matrix2cube", "(", "data_matrix", ",", "im_shape", ")", ":", "return", "data_matrix", ".", "T", ".", "reshape", "(", "[", "data_matrix", ".", "shape", "[", "1", "]", "]", "+", "list", "(", "im_shape", ")", ")" ]	20.351351	0.001267
def percentage_of_reoccurring_values_to_all_values(x): """ Returns the ratio of unique values, that are present in the time series more than once. # of data points occurring more than once / # of all data points This means the ratio is normalized to the number of data points in the time series...	[ "def", "percentage_of_reoccurring_values_to_all_values", "(", "x", ")", ":", "if", "not", "isinstance", "(", "x", ",", "pd", ".", "Series", ")", ":", "x", "=", "pd", ".", "Series", "(", "x", ")", "if", "x", ".", "size", "==", "0", ":", "return", "np"...	29.5	0.002345
def lookup(self): """ The meat of this middleware. Returns None and sets settings.SITE_ID if able to find a Site object by domain and its subdomain is valid. Returns an HttpResponsePermanentRedirect to the Site's default subdomain if a site is found but the requested su...	[ "def", "lookup", "(", "self", ")", ":", "# check to see if this hostname is actually a env hostname", "if", "self", ".", "domain", ":", "if", "self", ".", "subdomain", ":", "self", ".", "domain_unsplit", "=", "'%s.%s'", "%", "(", "self", ".", "subdomain", ",", ...	33.408163	0.001187
def sum(self, only_valid=True) -> ErrorValue: """Calculate the sum of pixels, not counting the masked ones if only_valid is True.""" if not only_valid: mask = 1 else: mask = self.mask return ErrorValue((self.intensity * mask).sum(), ((sel...	[ "def", "sum", "(", "self", ",", "only_valid", "=", "True", ")", "->", "ErrorValue", ":", "if", "not", "only_valid", ":", "mask", "=", "1", "else", ":", "mask", "=", "self", ".", "mask", "return", "ErrorValue", "(", "(", "self", ".", "intensity", "*",...	43.5	0.008451
def natural_sort(item): """ Sort strings that contain numbers correctly. >>> l = ['v1.3.12', 'v1.3.3', 'v1.2.5', 'v1.2.15', 'v1.2.3', 'v1.2.1'] >>> l.sort(key=natural_sort) >>> print l "['v1.2.1', 'v1.2.3', 'v1.2.5', 'v1.2.15', 'v1.3.3', 'v1.3.12']" """ if item is None: return 0...	[ "def", "natural_sort", "(", "item", ")", ":", "if", "item", "is", "None", ":", "return", "0", "def", "try_int", "(", "s", ")", ":", "try", ":", "return", "int", "(", "s", ")", "except", "ValueError", ":", "return", "s", "return", "tuple", "(", "map...	26.333333	0.002037
def main(): """ NAME thellier_magic_redo.py DESCRIPTION Calculates paleointensity parameters for thellier-thellier type data using bounds stored in the "redo" file SYNTAX thellier_magic_redo [command line options] OPTIONS -h prints help message -usr...	[ "def", "main", "(", ")", ":", "dir_path", "=", "'.'", "critout", "=", "\"\"", "version_num", "=", "pmag", ".", "get_version", "(", ")", "field", ",", "first_save", "=", "-", "1", ",", "1", "spec", ",", "recnum", ",", "start", ",", "end", "=", "0", ...	49.875	0.026244
def orientation(self, newaxis=None, rotation=0, rad=False): """ Set/Get actor orientation. :param rotation: If != 0 rotate actor around newaxis. :param rad: set to True if angle is in radians. .. hint:: \|gyroscope2\| \|gyroscope2.py\|_ """ if rad: rotat...	[ "def", "orientation", "(", "self", ",", "newaxis", "=", "None", ",", "rotation", "=", "0", ",", "rad", "=", "False", ")", ":", "if", "rad", ":", "rotation", "*=", "57.29578", "initaxis", "=", "utils", ".", "versor", "(", "self", ".", "top", "-", "s...	32.344828	0.00207
def to_list_of(self, state): # type: (S) -> List[B] '''Returns a list of all the foci within `state`. Requires kind Fold. This method will raise TypeError if the optic has no way to get any foci. ''' if not self._is_kind(Fold): raise TypeError('Must be an ins...	[ "def", "to_list_of", "(", "self", ",", "state", ")", ":", "# type: (S) -> List[B]", "if", "not", "self", ".", "_is_kind", "(", "Fold", ")", ":", "raise", "TypeError", "(", "'Must be an instance of Fold to .to_list_of()'", ")", "pure", "=", "lambda", "a", ":", ...	35.846154	0.01046
def _process_routers(self, routers, removed_routers, device_id=None, all_routers=False): """Process the set of routers. Iterating on the set of routers received and comparing it with the set of routers already in the routing service helper, new routers which are...	[ "def", "_process_routers", "(", "self", ",", "routers", ",", "removed_routers", ",", "device_id", "=", "None", ",", "all_routers", "=", "False", ")", ":", "try", ":", "ids_previously_hosted_routers", "=", "(", "set", "(", "r_id", "for", "r_id", ",", "rdata",...	48.863248	0.000857
def unholdAction(self): """ Unholds the action from being blocked on the leave event. """ self._actionHeld = False point = self.mapFromGlobal(QCursor.pos()) self.setCurrentAction(self.actionAt(point))	[ "def", "unholdAction", "(", "self", ")", ":", "self", ".", "_actionHeld", "=", "False", "point", "=", "self", ".", "mapFromGlobal", "(", "QCursor", ".", "pos", "(", ")", ")", "self", ".", "setCurrentAction", "(", "self", ".", "actionAt", "(", "point", ...	32.125	0.011364
def as_constraint(cls, constraint, model, constraint_type=None, **init_kwargs): """ Initiate a Model which should serve as a constraint. Such a constraint-model should be initiated with knowledge of another ``BaseModel``, from which it will take its parameters:: model = Mode...	[ "def", "as_constraint", "(", "cls", ",", "constraint", ",", "model", ",", "constraint_type", "=", "None", ",", "", "", "init_kwargs", ")", ":", "allowed_types", "=", "[", "sympy", ".", "Eq", ",", "sympy", ".", "Ge", ",", "sympy", ".", "Le", "]", "i...	42.661017	0.000777
def from_boto_instance(cls, instance): """ Loads a ``HostEntry`` from a boto instance. :param instance: A boto instance object. :type instance: :py:class:`boto.ec2.instanceInstance` :rtype: :py:class:`HostEntry` """ return cls( name=instance.tags.get...	[ "def", "from_boto_instance", "(", "cls", ",", "instance", ")", ":", "return", "cls", "(", "name", "=", "instance", ".", "tags", ".", "get", "(", "'Name'", ")", ",", "private_ip", "=", "instance", ".", "private_ip_address", ",", "public_ip", "=", "instance"...	40.791667	0.001996
def full(self, name, fill_value, kwargs): """Create an array. Keyword arguments as per :func:`zarr.creation.full`.""" return self._write_op(self._full_nosync, name, fill_value, kwargs)	[ "def", "full", "(", "self", ",", "name", ",", "fill_value", ",", "", "", "kwargs", ")", ":", "return", "self", ".", "_write_op", "(", "self", ".", "_full_nosync", ",", "name", ",", "fill_value", ",", "", "", "kwargs", ")" ]	52.25	0.009434
def aggregate_gradients_using_copy_with_device_selection( tower_grads, avail_devices, use_mean=True, check_inf_nan=False): """Aggregate gradients, controlling device for the aggregation. Args: tower_grads: List of lists of (gradient, variable) tuples. The outer list is over towers. The inner li...	[ "def", "aggregate_gradients_using_copy_with_device_selection", "(", "tower_grads", ",", "avail_devices", ",", "use_mean", "=", "True", ",", "check_inf_nan", "=", "False", ")", ":", "agg_grads", "=", "[", "]", "has_nan_or_inf_list", "=", "[", "]", "for", "i", ",", ...	46.666667	0.000875
def check_overlap(current, hit, overlap = 200): """ determine if sequence has already hit the same part of the model, indicating that this hit is for another 16S rRNA gene """ for prev in current: p_coords = prev[2:4] coords = hit[2:4] if get_overlap(coords, p_coords) >= over...	[ "def", "check_overlap", "(", "current", ",", "hit", ",", "overlap", "=", "200", ")", ":", "for", "prev", "in", "current", ":", "p_coords", "=", "prev", "[", "2", ":", "4", "]", "coords", "=", "hit", "[", "2", ":", "4", "]", "if", "get_overlap", "...	32.272727	0.008219
def _prepend_name(self, prefix, dict_): '''changes the keys of the dictionary prepending them with "name."''' return dict(['.'.join([prefix, name]), msg] for name, msg in dict_.iteritems())	[ "def", "_prepend_name", "(", "self", ",", "prefix", ",", "dict_", ")", ":", "return", "dict", "(", "[", "'.'", ".", "join", "(", "[", "prefix", ",", "name", "]", ")", ",", "msg", "]", "for", "name", ",", "msg", "in", "dict_", ".", "iteritems", "(...	55.5	0.008889
def save_module(self, path, module, change_time=None): """Saves the specified module and its contents to the file system so that it doesn't have to be parsed again unless it has changed.""" #First, get a list of the module paths that have already been #pickled. We will add to that list ...	[ "def", "save_module", "(", "self", ",", "path", ",", "module", ",", "change_time", "=", "None", ")", ":", "#First, get a list of the module paths that have already been ", "#pickled. We will add to that list of pickling this module.", "if", "settings", ".", "use_filesystem_cach...	36.64	0.008511
def partially_matched_crossover(random, mom, dad, args): """Return the offspring of partially matched crossover on the candidates. This function performs partially matched crossover (PMX). This type of crossover assumes that candidates are composed of discrete values that are permutations of a given se...	[ "def", "partially_matched_crossover", "(", "random", ",", "mom", ",", "dad", ",", "args", ")", ":", "crossover_rate", "=", "args", ".", "setdefault", "(", "'crossover_rate'", ",", "1.0", ")", "if", "random", ".", "random", "(", ")", "<", "crossover_rate", ...	36.769231	0.002038
def poke(self, context): """ Execute the bash command in a temporary directory which will be cleaned afterwards """ bash_command = self.bash_command self.log.info("Tmp dir root location: \n %s", gettempdir()) with TemporaryDirectory(prefix='airflowtmp') as tmp_dir...	[ "def", "poke", "(", "self", ",", "context", ")", ":", "bash_command", "=", "self", ".", "bash_command", "self", ".", "log", ".", "info", "(", "\"Tmp dir root location: \\n %s\"", ",", "gettempdir", "(", ")", ")", "with", "TemporaryDirectory", "(", "prefix", ...	41.09375	0.002229
def load_notebook(self, name): """Loads a notebook file into memory.""" with open(self.get_path('%s.ipynb'%name)) as f: nb = nbformat.read(f, as_version=4) return nb,f	[ "def", "load_notebook", "(", "self", ",", "name", ")", ":", "with", "open", "(", "self", ".", "get_path", "(", "'%s.ipynb'", "%", "name", ")", ")", "as", "f", ":", "nb", "=", "nbformat", ".", "read", "(", "f", ",", "as_version", "=", "4", ")", "r...	33.166667	0.019608
def mouseMoveEvent( self, event ): """ Sets the value for the slider at the event position. :param event \| <QMouseEvent> """ self.setValue(self.valueAt(event.pos().x()))	[ "def", "mouseMoveEvent", "(", "self", ",", "event", ")", ":", "self", ".", "setValue", "(", "self", ".", "valueAt", "(", "event", ".", "pos", "(", ")", ".", "x", "(", ")", ")", ")" ]	31.857143	0.021834
def _var_isomorphic(a, b, check_varprops=True): """ Two Xmrs objects are isomorphic if they have the same structure as determined by variable linkages between preds. """ # first some quick checks if len(a.eps()) != len(b.eps()): return False if len(a.variables()) != len(b.variables()): retur...	[ "def", "_var_isomorphic", "(", "a", ",", "b", ",", "check_varprops", "=", "True", ")", ":", "# first some quick checks", "if", "len", "(", "a", ".", "eps", "(", ")", ")", "!=", "len", "(", "b", ".", "eps", "(", ")", ")", ":", "return", "False", "if...	35.269231	0.002122
def FibreMode(gridSize,modeDiameter): """ Return a pupil-plane Gaussian mode with 1/e diameter given by modeDiameter, normalised so that integral power over the mode is unity """ rmode=modeDiameter/2 return np.exp(-(RadiusGrid(gridSize)/rmode)*2)/(np.sqrt(np.pi/2)rmode)	[ "def", "FibreMode", "(", "gridSize", ",", "modeDiameter", ")", ":", "rmode", "=", "modeDiameter", "/", "2", "return", "np", ".", "exp", "(", "-", "(", "RadiusGrid", "(", "gridSize", ")", "/", "rmode", ")", "**", "2", ")", "/", "(", "np", ".", "sqrt...	41.857143	0.013378
def get_name_levels(node): """Return a list of ``(name, level)`` tuples for assigned names The `level` is `None` for simple assignments and is a list of numbers for tuple assignments for example in:: a, (b, c) = x The levels for for `a` is ``[0]``, for `b` is ``[1, 0]`` and for `c` is ``[1,...	[ "def", "get_name_levels", "(", "node", ")", ":", "visitor", "=", "_NodeNameCollector", "(", ")", "ast", ".", "walk", "(", "node", ",", "visitor", ")", "return", "visitor", ".", "names" ]	27.266667	0.002364
def iodp_kly4s_lore(kly4s_file, meas_out='measurements.txt', spec_infile='specimens.txt', spec_out='specimens.txt', instrument='IODP-KLY4S', actual_volume="",dir_path='.', input_dir_path=''): """ Converts ascii files generated by SUFAR ver.4.0 and downloaded from the LIMS online repos...	[ "def", "iodp_kly4s_lore", "(", "kly4s_file", ",", "meas_out", "=", "'measurements.txt'", ",", "spec_infile", "=", "'specimens.txt'", ",", "spec_out", "=", "'specimens.txt'", ",", "instrument", "=", "'IODP-KLY4S'", ",", "actual_volume", "=", "\"\"", ",", "dir_path", ...	45.509091	0.02007
def p_field_optional2_4(self, p): """ field : alias name selection_set """ p[0] = Field(name=p[2], alias=p[1], selections=p[3])	[ "def", "p_field_optional2_4", "(", "self", ",", "p", ")", ":", "p", "[", "0", "]", "=", "Field", "(", "name", "=", "p", "[", "2", "]", ",", "alias", "=", "p", "[", "1", "]", ",", "selections", "=", "p", "[", "3", "]", ")" ]	31	0.012579
def name_replace(self, to_replace, replacement): """Replaces part of tag name with new value""" self.name = self.name.replace(to_replace, replacement)	[ "def", "name_replace", "(", "self", ",", "to_replace", ",", "replacement", ")", ":", "self", ".", "name", "=", "self", ".", "name", ".", "replace", "(", "to_replace", ",", "replacement", ")" ]	54.666667	0.012048
def write_across_link(self, address, data, x, y, link): """Write a bytestring to an address in memory on a neigbouring chip. .. warning:: This function is intended for low-level debug use only and is not optimised for performance nor intended for more general use. This...	[ "def", "write_across_link", "(", "self", ",", "address", ",", "data", ",", "x", ",", "y", ",", "link", ")", ":", "if", "address", "%", "4", ":", "raise", "ValueError", "(", "\"Addresses must be word-aligned.\"", ")", "if", "len", "(", "data", ")", "%", ...	41.673077	0.000902
def search(cls, query, search_opts=None): """ Search tags. For more information, see the backend function :py:func:`nipap.backend.Nipap.search_tag`. """ if search_opts is None: search_opts = {} xmlrpc = XMLRPCConnection() try: se...	[ "def", "search", "(", "cls", ",", "query", ",", "search_opts", "=", "None", ")", ":", "if", "search_opts", "is", "None", ":", "search_opts", "=", "{", "}", "xmlrpc", "=", "XMLRPCConnection", "(", ")", "try", ":", "search_result", "=", "xmlrpc", ".", "c...	30.607143	0.002262
def _commit_with_retry(client, write_pbs, transaction_id): """Call ``Commit`` on the GAPIC client with retry / sleep. Retries the ``Commit`` RPC on Unavailable. Usually this RPC-level retry is handled by the underlying GAPICd client, but in this case it doesn't because ``Commit`` is not always idempote...	[ "def", "_commit_with_retry", "(", "client", ",", "write_pbs", ",", "transaction_id", ")", ":", "current_sleep", "=", "_INITIAL_SLEEP", "while", "True", ":", "try", ":", "return", "client", ".", "_firestore_api", ".", "commit", "(", "client", ".", "_database_stri...	37.75	0.000646
def _get_keywords(self, **kwargs): """Format GET request parameters and keywords.""" if self.jurisdiction and 'jurisdiction_id' not in kwargs: kwargs['jurisdiction_id'] = self.jurisdiction if 'count' in kwargs: kwargs['page_size'] = kwargs.pop('count') if 'start' ...	[ "def", "_get_keywords", "(", "self", ",", "", "", "kwargs", ")", ":", "if", "self", ".", "jurisdiction", "and", "'jurisdiction_id'", "not", "in", "kwargs", ":", "kwargs", "[", "'jurisdiction_id'", "]", "=", "self", ".", "jurisdiction", "if", "'count'", "...	41.285714	0.002255
def add_or_update(self, app_id): ''' Add or update the category. ''' logger.info('Collect info: user-{0}, uid-{1}'.format(self.userinfo.uid, app_id)) MCollect.add_or_update(self.userinfo.uid, app_id) out_dic = {'success': True} return json.dump(out_dic, self)	[ "def", "add_or_update", "(", "self", ",", "app_id", ")", ":", "logger", ".", "info", "(", "'Collect info: user-{0}, uid-{1}'", ".", "format", "(", "self", ".", "userinfo", ".", "uid", ",", "app_id", ")", ")", "MCollect", ".", "add_or_update", "(", "self", ...	38.5	0.009524
def create(cls, train_ds, valid_ds, test_ds=None, path:PathOrStr='.', no_check:bool=False, bs=64, val_bs:int=None, num_workers:int=0, device:torch.device=None, collate_fn:Callable=data_collate, dl_tfms:Optional[Collection[Callable]]=None, bptt:int=70, backwards:bool=False, **dl_kwargs) -> ...	[ "def", "create", "(", "cls", ",", "train_ds", ",", "valid_ds", ",", "test_ds", "=", "None", ",", "path", ":", "PathOrStr", "=", "'.'", ",", "no_check", ":", "bool", "=", "False", ",", "bs", "=", "64", ",", "val_bs", ":", "int", "=", "None", ",", ...	89.545455	0.045226
def generate_non_rabs(self): """ Shrink the non-Rab DB size by reducing sequence redundancy. """ logging.info('Building non-Rab DB') run_cmd([self.pathfinder['cd-hit'], '-i', self.path['non_rab_db'], '-o', self.output['non_rab_db'], '-d', '100', '-c', str(config['param'...	[ "def", "generate_non_rabs", "(", "self", ")", ":", "logging", ".", "info", "(", "'Building non-Rab DB'", ")", "run_cmd", "(", "[", "self", ".", "pathfinder", "[", "'cd-hit'", "]", ",", "'-i'", ",", "self", ".", "path", "[", "'non_rab_db'", "]", ",", "'-o...	54.125	0.009091
def ServiceWorker_dispatchSyncEvent(self, origin, registrationId, tag, lastChance): """ Function path: ServiceWorker.dispatchSyncEvent Domain: ServiceWorker Method name: dispatchSyncEvent Parameters: Required arguments: 'origin' (type: string) -> No description 'registrationId' (type:...	[ "def", "ServiceWorker_dispatchSyncEvent", "(", "self", ",", "origin", ",", "registrationId", ",", "tag", ",", "lastChance", ")", ":", "assert", "isinstance", "(", "origin", ",", "(", "str", ",", ")", ")", ",", "\"Argument 'origin' must be of type '['str']'. Received...	37.21875	0.047463
def skipDryRun(logger, dryRun, level=logging.DEBUG): """ Return logging function. When logging function called, will return True if action should be skipped. Log will indicate if skipped because of dry run. """ # This is an undocumented "feature" of logging module: # logging.log() requires a nu...	[ "def", "skipDryRun", "(", "logger", ",", "dryRun", ",", "level", "=", "logging", ".", "DEBUG", ")", ":", "# This is an undocumented \"feature\" of logging module:", "# logging.log() requires a numeric level", "# logging.getLevelName() maps names to numbers", "if", "not", "isins...	38.6	0.001686
def size(self): """ Returns the size of the belief state. Initially if there are $n$ consistent members, (the result of `self.number_of_singleton_referents()`) then there are generally $2^{n}-1$ valid belief states. """ n = self.number_of_singleton_referents() targets =...	[ "def", "size", "(", "self", ")", ":", "n", "=", "self", ".", "number_of_singleton_referents", "(", ")", "targets", "=", "list", "(", "self", ".", "iter_referents_tuples", "(", ")", ")", "n_targets", "=", "len", "(", "targets", ")", "if", "n", "==", "0"...	39.111111	0.009709
def decode(self, encoded_packet): """Decode a transmitted package. The return value indicates how many binary attachment packets are necessary to fully decode the packet. """ ep = encoded_packet try: self.packet_type = int(ep[0:1]) except TypeError: ...	[ "def", "decode", "(", "self", ",", "encoded_packet", ")", ":", "ep", "=", "encoded_packet", "try", ":", "self", ".", "packet_type", "=", "int", "(", "ep", "[", "0", ":", "1", "]", ")", "except", "TypeError", ":", "self", ".", "packet_type", "=", "ep"...	31.435897	0.001582
def create_size_estimators(): """Create a dict of name to a function that returns an estimated size for a given target. The estimated size is used to build the largest targets first (subject to dependency constraints). Choose 'random' to choose random sizes for each target, which may be useful for distributed ...	[ "def", "create_size_estimators", "(", ")", ":", "def", "line_count", "(", "filename", ")", ":", "with", "open", "(", "filename", ",", "'rb'", ")", "as", "fh", ":", "return", "sum", "(", "1", "for", "line", "in", "fh", ")", "return", "{", "'linecount'",...	42.666667	0.010191
def register_aggregations(): """Register sample aggregations.""" return [dict( aggregation_name='file-download-agg', templates='invenio_stats.contrib.aggregations.aggr_file_download', aggregator_class=StatAggregator, aggregator_config=dict( client=current_search_clien...	[ "def", "register_aggregations", "(", ")", ":", "return", "[", "dict", "(", "aggregation_name", "=", "'file-download-agg'", ",", "templates", "=", "'invenio_stats.contrib.aggregations.aggr_file_download'", ",", "aggregator_class", "=", "StatAggregator", ",", "aggregator_conf...	38	0.000641
def _named_tuple_converter(tuple_type): # type: (Type[Tuple]) -> _AggregateConverter """Return an _AggregateConverter for named tuples of the given type.""" def _from_dict(dict_value): if dict_value: return tuple_type(**dict_value) # Cannot construct a namedtuple value from an e...	[ "def", "_named_tuple_converter", "(", "tuple_type", ")", ":", "# type: (Type[Tuple]) -> _AggregateConverter", "def", "_from_dict", "(", "dict_value", ")", ":", "if", "dict_value", ":", "return", "tuple_type", "(", "", "", "dict_value", ")", "# Cannot construct a named...	29.666667	0.001815
async def cas(self, value: Any, **kwargs) -> bool: """ Checks and sets the specified value for the locked key. If the value has changed since the lock was created, it will raise an :class:`aiocache.lock.OptimisticLockError` exception. :raises: :class:`aiocache.lock.OptimisticLoc...	[ "async", "def", "cas", "(", "self", ",", "value", ":", "Any", ",", "", "", "kwargs", ")", "->", "bool", ":", "success", "=", "await", "self", ".", "client", ".", "set", "(", "self", ".", "key", ",", "value", ",", "_cas_token", "=", "self", ".",...	45.416667	0.010791
def links(self): """Get all links. Returns: list[gkeepapi.node.WebLink]: A list of links. """ return [annotation for annotation in self._annotations.values() if isinstance(annotation, WebLink) ]	[ "def", "links", "(", "self", ")", ":", "return", "[", "annotation", "for", "annotation", "in", "self", ".", "_annotations", ".", "values", "(", ")", "if", "isinstance", "(", "annotation", ",", "WebLink", ")", "]" ]	27.888889	0.015444
def convert_dist(feed: "Feed", new_dist_units: str) -> "Feed": """ Convert the distances recorded in the ``shape_dist_traveled`` columns of the given Feed to the given distance units. New distance units must lie in :const:`.constants.DIST_UNITS`. Return the resulting feed. """ feed = feed.co...	[ "def", "convert_dist", "(", "feed", ":", "\"Feed\"", ",", "new_dist_units", ":", "str", ")", "->", "\"Feed\"", ":", "feed", "=", "feed", ".", "copy", "(", ")", "if", "feed", ".", "dist_units", "==", "new_dist_units", ":", "# Nothing to do", "return", "feed...	31.37931	0.001066
def tange_debyetemp(v, v0, gamma0, a, b, theta0): """ calculate Debye temperature for the Tange equation :param v: unit-cell volume in A^3 :param v0: unit-cell volume in A^3 at 1 bar :param gamma0: Gruneisen parameter at 1 bar :param a: volume-independent adjustable parameters :param b: vol...	[ "def", "tange_debyetemp", "(", "v", ",", "v0", ",", "gamma0", ",", "a", ",", "b", ",", "theta0", ")", ":", "x", "=", "v", "/", "v0", "gamma", "=", "tange_grun", "(", "v", ",", "v0", ",", "gamma0", ",", "a", ",", "b", ")", "if", "isuncertainties...	37.714286	0.001232
def __updateJobResultsPeriodic(self): """ Periodic check to see if this is the best model. This should only have an effect if this is the first model to report its progress """ if self._isBestModelStored and not self._isBestModel: return while True: jobResultsStr = self._jobsDAO.j...	[ "def", "__updateJobResultsPeriodic", "(", "self", ")", ":", "if", "self", ".", "_isBestModelStored", "and", "not", "self", ".", "_isBestModel", ":", "return", "while", "True", ":", "jobResultsStr", "=", "self", ".", "_jobsDAO", ".", "jobGetFields", "(", "self"...	37.288462	0.015578
def conglomerate(self, messages, **config): """ Given N messages, return another list that has some of them grouped together into a common 'item'. A conglomeration of messages should be of the following form:: { 'subtitle': 'relrod pushed commits to ghc and 487 other pack...	[ "def", "conglomerate", "(", "self", ",", "messages", ",", "", "", "config", ")", ":", "for", "conglomerator", "in", "self", ".", "conglomerator_objects", ":", "messages", "=", "conglomerator", ".", "conglomerate", "(", "messages", ",", "", "", "config", ...	41.095238	0.001132
def _collect(self, lines): """ This routine reads the following from the Siesta file: - atomic positions - cell_parameters - atomic_species """ for tag,value,unit in re.findall( '([\.A-Za-z]+)\s+%s\s+([A-Za-z]+)?' % self._num_re...	[ "def", "_collect", "(", "self", ",", "lines", ")", ":", "for", "tag", ",", "value", ",", "unit", "in", "re", ".", "findall", "(", "'([\\.A-Za-z]+)\\s+%s\\s+([A-Za-z]+)?'", "%", "self", ".", "_num_regex", ",", "lines", ")", ":", "tag", "=", "tag", ".", ...	45.52459	0.01128
def trace_memory_start(self): """ Starts measuring memory consumption """ self.trace_memory_clean_caches() objgraph.show_growth(limit=30) gc.collect() self._memory_start = self.worker.get_memory()["total"]	[ "def", "trace_memory_start", "(", "self", ")", ":", "self", ".", "trace_memory_clean_caches", "(", ")", "objgraph", ".", "show_growth", "(", "limit", "=", "30", ")", "gc", ".", "collect", "(", ")", "self", ".", "_memory_start", "=", "self", ".", "worker", ...	26.666667	0.008065
def authorize(login, password, scopes, note='', note_url='', client_id='', client_secret='', two_factor_callback=None): """Obtain an authorization token for the GitHub API. :param str login: (required) :param str password: (required) :param list scopes: (required), areas you want this tok...	[ "def", "authorize", "(", "login", ",", "password", ",", "scopes", ",", "note", "=", "''", ",", "note_url", "=", "''", ",", "client_id", "=", "''", ",", "client_secret", "=", "''", ",", "two_factor_callback", "=", "None", ")", ":", "gh", "=", "GitHub", ...	46.826087	0.00091
def lcsubstrings(seq1, seq2, positions=False): """Find the longest common substring(s) in the sequences `seq1` and `seq2`. If positions evaluates to `True` only their positions will be returned, together with their length, in a tuple: (length, [(start pos in seq1, start pos in seq2)..]) Otherwise, the subst...	[ "def", "lcsubstrings", "(", "seq1", ",", "seq2", ",", "positions", "=", "False", ")", ":", "L1", ",", "L2", "=", "len", "(", "seq1", ")", ",", "len", "(", "seq2", ")", "ms", "=", "[", "]", "mlen", "=", "last", "=", "0", "if", "L1", "<", "L2",...	23.717391	0.047535
def copy(self, target): """Copies this file the `target`, which might be a directory. The permissions are copied. """ shutil.copy(self.path, self._to_backend(target))	[ "def", "copy", "(", "self", ",", "target", ")", ":", "shutil", ".", "copy", "(", "self", ".", "path", ",", "self", ".", "_to_backend", "(", "target", ")", ")" ]	32.333333	0.01005
def get_pod_container(self, volume_mounts, persistence_outputs=None, persistence_data=None, outputs_refs_jobs=None, outputs_refs_experiments=None, secret_refs=None,...	[ "def", "get_pod_container", "(", "self", ",", "volume_mounts", ",", "persistence_outputs", "=", "None", ",", "persistence_data", "=", "None", ",", "outputs_refs_jobs", "=", "None", ",", "outputs_refs_experiments", "=", "None", ",", "secret_refs", "=", "None", ",",...	44.113636	0.008569
def get_channel_comment(self, name=None, group=None, index=None): """Gets channel comment. Channel can be specified in two ways: * using the first positional argument name * if there are multiple occurrences for this channel then the group and index arguments c...	[ "def", "get_channel_comment", "(", "self", ",", "name", "=", "None", ",", "group", "=", "None", ",", "index", "=", "None", ")", ":", "gp_nr", ",", "ch_nr", "=", "self", ".", "_validate_channel_selection", "(", "name", ",", "group", ",", "index", ")", "...	29.581395	0.001522
def export_java( self, java_template=JAVA_TEMPLATE, java_indent=JAVA_INDENTATION, java_package=JAVA_PACKAGE, is_public=True): '''Export the grammar to a Java file which can be used with the jleri module.''' language = [] enums ...	[ "def", "export_java", "(", "self", ",", "java_template", "=", "JAVA_TEMPLATE", ",", "java_indent", "=", "JAVA_INDENTATION", ",", "java_package", "=", "JAVA_PACKAGE", ",", "is_public", "=", "True", ")", ":", "language", "=", "[", "]", "enums", "=", "set", "("...	36.323077	0.000825
def infer_namespace(ac): """Infer the single namespace of the given accession This function is convenience wrapper around infer_namespaces(). Returns: * None if no namespaces are inferred * The (single) namespace if only one namespace is inferred * Raises an exception if more than one nam...	[ "def", "infer_namespace", "(", "ac", ")", ":", "namespaces", "=", "infer_namespaces", "(", "ac", ")", "if", "not", "namespaces", ":", "return", "None", "if", "len", "(", "namespaces", ")", ">", "1", ":", "raise", "BioutilsError", "(", "\"Multiple namespaces ...	28.277778	0.00095
def stop(self): """Stop the timer.""" dd = time() - self._start self.ms = int(round(1000 * dd))	[ "def", "stop", "(", "self", ")", ":", "dd", "=", "time", "(", ")", "-", "self", ".", "_start", "self", ".", "ms", "=", "int", "(", "round", "(", "1000", "*", "dd", ")", ")" ]	29	0.016807
def should_use(intersection): """Check if an intersection can be used as part of a curved polygon. Will return :data:`True` if the intersection is classified as :attr:`~.IntersectionClassification.FIRST`, :attr:`~.IntersectionClassification.SECOND` or :attr:`~.IntersectionClassification.COINCIDENT`...	[ "def", "should_use", "(", "intersection", ")", ":", "if", "intersection", ".", "interior_curve", "in", "ACCEPTABLE_CLASSIFICATIONS", ":", "return", "True", "if", "intersection", ".", "interior_curve", "in", "TANGENT_CLASSIFICATIONS", ":", "return", "intersection", "."...	37	0.001098
def _write(self, data, length, progress_callback=None): """Sends the data to the device, tracking progress with the callback.""" if progress_callback: progress = self._handle_progress(length, progress_callback) six.next(progress) while length: tmp = data.read(FASTBOOT_DOWNLOAD_CHUNK_SIZE_K...	[ "def", "_write", "(", "self", ",", "data", ",", "length", ",", "progress_callback", "=", "None", ")", ":", "if", "progress_callback", ":", "progress", "=", "self", ".", "_handle_progress", "(", "length", ",", "progress_callback", ")", "six", ".", "next", "...	35.833333	0.015873
def get_file_range(ase, offsets, timeout=None): # type: (blobxfer.models.azure.StorageEntity, # blobxfer.models.download.Offsets, int) -> bytes """Retrieve file range :param blobxfer.models.azure.StorageEntity ase: Azure StorageEntity :param blobxfer.models.download.Offsets offsets: download ...	[ "def", "get_file_range", "(", "ase", ",", "offsets", ",", "timeout", "=", "None", ")", ":", "# type: (blobxfer.models.azure.StorageEntity,", "# blobxfer.models.download.Offsets, int) -> bytes", "dir", ",", "fpath", ",", "_", "=", "parse_file_path", "(", "ase", "....	37.714286	0.001232
def skip_class_parameters(): """ Can be used with :meth:`add_parametric_object_params`, this removes duplicate variables cluttering the sphinx docs. This is only intended to be used with sphinx autodoc In your sphinx ``config.py`` file:: from cqparts.utils.sphinx import skip_class_par...	[ "def", "skip_class_parameters", "(", ")", ":", "from", ".", ".", "params", "import", "Parameter", "def", "callback", "(", "app", ",", "what", ",", "name", ",", "obj", ",", "skip", ",", "options", ")", ":", "if", "(", "what", "==", "'class'", ")", "an...	29.681818	0.001484
def _get_taxon(taxon): """Return Interacting taxon ID \| optional \| 0 or 1 \| gaf column 13.""" if not taxon: return None ## assert taxon[:6] == 'taxon:', 'UNRECOGNIZED Taxon({Taxon})'.format(Taxon=taxon) ## taxid = taxon[6:] ## assert taxon[:10] == 'NCBITaxon:', 'UNREC...	[ "def", "_get_taxon", "(", "taxon", ")", ":", "if", "not", "taxon", ":", "return", "None", "## assert taxon[:6] == 'taxon:', 'UNRECOGNIZED Taxon({Taxon})'.format(Taxon=taxon)", "## taxid = taxon[6:]", "## assert taxon[:10] == 'NCBITaxon:', 'UNRECOGNIZED Taxon({Taxon})'.format(Taxon=taxon)...	45.769231	0.01318
def get_type_name(type_name, sub_type=None): """ Returns a c# type according to a spec type """ if type_name == "enum": return type_name elif type_name == "boolean": return "bool" elif type_name == "integer": return "long" elif type_name == "time": return "long" ...	[ "def", "get_type_name", "(", "type_name", ",", "sub_type", "=", "None", ")", ":", "if", "type_name", "==", "\"enum\"", ":", "return", "type_name", "elif", "type_name", "==", "\"boolean\"", ":", "return", "\"bool\"", "elif", "type_name", "==", "\"integer\"", ":...	24.8	0.001942
def from_ashrae_dict_cooling(cls, ashrae_dict, location, use_010=False, pressure=None, tau=None): """Create a heating design day object from a ASHRAE HOF dictionary. Args: ashrae_dict: A dictionary with 32 keys that match those in the cooling...	[ "def", "from_ashrae_dict_cooling", "(", "cls", ",", "ashrae_dict", ",", "location", ",", "use_010", "=", "False", ",", "pressure", "=", "None", ",", "tau", "=", "None", ")", ":", "db_key", "=", "'DB004'", "if", "use_010", "is", "False", "else", "'DB010'", ...	58.648649	0.002267
def template_engine(self, entry, startnode): """The format template interpetation engine. See the comment at the beginning of this module for the how we interpret format specifications such as %c, %C, and so on. """ # print("-----") # print(startnode) # print(en...	[ "def", "template_engine", "(", "self", ",", "entry", ",", "startnode", ")", ":", "# print(\"-----\")", "# print(startnode)", "# print(entry[0])", "# print('======')", "startnode_start", "=", "len", "(", "self", ".", "f", ".", "getvalue", "(", ")", ")", "start", ...	36.617834	0.002202
def absolute_symlink(source_path, target_path): """Create a symlink at target pointing to source using the absolute path. :param source_path: Absolute path to source file :param target_path: Absolute path to intended symlink :raises ValueError if source_path or link_path are not unique, absolute paths :raise...	[ "def", "absolute_symlink", "(", "source_path", ",", "target_path", ")", ":", "if", "not", "os", ".", "path", ".", "isabs", "(", "source_path", ")", ":", "raise", "ValueError", "(", "\"Path for source : {} must be absolute\"", ".", "format", "(", "source_path", "...	44.153846	0.011083
def month_interval(year, month, return_str=False): """ Usage Example:: >>> timewrapper.day_interval(2014, 12) (datetime(2014, 12, 1, 0, 0, 0), datetime(2014, 12, 31, 23, 59, 59)) """ if month == 12: start, end = datetime(year, month, ...	[ "def", "month_interval", "(", "year", ",", "month", ",", "return_str", "=", "False", ")", ":", "if", "month", "==", "12", ":", "start", ",", "end", "=", "datetime", "(", "year", ",", "month", ",", "1", ")", ",", "datetime", "(", "year", "+", "1", ...	34.823529	0.013158
def readheaders(self): """Read header lines. Read header lines up to the entirely blank line that terminates them. The (normally blank) line that ends the headers is skipped, but not included in the returned list. If a non-header line ends the headers, (which is an error), an a...	[ "def", "readheaders", "(", "self", ")", ":", "self", ".", "dict", "=", "{", "}", "self", ".", "unixfrom", "=", "''", "self", ".", "headers", "=", "lst", "=", "[", "]", "self", ".", "status", "=", "''", "headerseen", "=", "\"\"", "firstline", "=", ...	39.240506	0.000629
def read(fobj, kwargs): """Read a WAV file into a `TimeSeries` Parameters ---------- fobj : `file`, `str` open file-like object or filename to read from kwargs all keyword arguments are passed onto :func:`scipy.io.wavfile.read` See also -------- scipy.io.wavfile.re...	[ "def", "read", "(", "fobj", ",", "", "", "kwargs", ")", ":", "fsamp", ",", "arr", "=", "wavfile", ".", "read", "(", "fobj", ",", "", "", "kwargs", ")", "return", "TimeSeries", "(", "arr", ",", "sample_rate", "=", "fsamp", ")" ]	24.826087	0.001686
def _yum_pkginfo(output): ''' Parse yum/dnf output (which could contain irregular line breaks if package names are long) retrieving the name, version, etc., and return a list of pkginfo namedtuples. ''' cur = {} keys = itertools.cycle(('name', 'version', 'repoid')) values = salt.utils.it...	[ "def", "_yum_pkginfo", "(", "output", ")", ":", "cur", "=", "{", "}", "keys", "=", "itertools", ".", "cycle", "(", "(", "'name'", ",", "'version'", ",", "'repoid'", ")", ")", "values", "=", "salt", ".", "utils", ".", "itertools", ".", "split", "(", ...	41.75	0.00065
def p_delays_floatnumber(self, p): 'delays : DELAY floatnumber' p[0] = DelayStatement(FloatConst( p[2], lineno=p.lineno(1)), lineno=p.lineno(1)) p.set_lineno(0, p.lineno(1))	[ "def", "p_delays_floatnumber", "(", "self", ",", "p", ")", ":", "p", "[", "0", "]", "=", "DelayStatement", "(", "FloatConst", "(", "p", "[", "2", "]", ",", "lineno", "=", "p", ".", "lineno", "(", "1", ")", ")", ",", "lineno", "=", "p", ".", "li...	41	0.009569
def _mk_connectivity_flats(self, i12, j1, j2, mat_data, flats, elev, mag): """ Helper function for _mk_adjacency_matrix. This calcualtes the connectivity for flat regions. Every pixel in the flat will drain to a random pixel in the flat. This accumulates all the area in the flat ...	[ "def", "_mk_connectivity_flats", "(", "self", ",", "i12", ",", "j1", ",", "j2", ",", "mat_data", ",", "flats", ",", "elev", ",", "mag", ")", ":", "nn", ",", "mm", "=", "flats", ".", "shape", "NN", "=", "np", ".", "prod", "(", "flats", ".", "shape...	45.683824	0.000945
def fake_exc_info(exc_info, filename, lineno): """Helper for `translate_exception`.""" exc_type, exc_value, tb = exc_info # figure the real context out if tb is not None: # if there is a local called __tonnikala_exception__, we get # rid of it to not break the debug functionality. ...	[ "def", "fake_exc_info", "(", "exc_info", ",", "filename", ",", "lineno", ")", ":", "exc_type", ",", "exc_value", ",", "tb", "=", "exc_info", "# figure the real context out", "if", "tb", "is", "not", "None", ":", "# if there is a local called __tonnikala_exception__, w...	37.226667	0.000698
def zipf_random_sample(distr_map, sample_len): """Helper function: Generate a random Zipf sample of given length. Args: distr_map: list of float, Zipf's distribution over nbr_symbols. sample_len: integer, length of sequence to generate. Returns: sample: list of integer, Zipf's random sample over nbr...	[ "def", "zipf_random_sample", "(", "distr_map", ",", "sample_len", ")", ":", "u", "=", "np", ".", "random", ".", "random", "(", "sample_len", ")", "# Random produces values in range [0.0,1.0); even if it is almost", "# improbable(but possible) that it can generate a clear 0.000....	35.866667	0.01087
def answer_callback_query(self, callback_query_id, text=None, show_alert=None, url=None, cache_time=None): """ Use this method to send answers to callback queries sent from inline keyboards. The answer will be displayed to the user as a notification at the top of the chat screen or as an alert. On succe...	[ "def", "answer_callback_query", "(", "self", ",", "callback_query_id", ",", "text", "=", "None", ",", "show_alert", "=", "None", ",", "url", "=", "None", ",", "cache_time", "=", "None", ")", ":", "assert_type_or_raise", "(", "callback_query_id", ",", "unicode_...	54.473684	0.009491
def parse(self, plist): """Update the builder using the provided `plist`. `plist` can be either a Packet() or a PacketList(). """ if not isinstance(plist, PacketList): plist = PacketList(plist) for pkt in plist[LLTD]: if LLTDQueryLargeTlv in pkt: ...	[ "def", "parse", "(", "self", ",", "plist", ")", ":", "if", "not", "isinstance", "(", "plist", ",", "PacketList", ")", ":", "plist", "=", "PacketList", "(", "plist", ")", "for", "pkt", "in", "plist", "[", "LLTD", "]", ":", "if", "LLTDQueryLargeTlv", "...	47.178571	0.001484
def addValue(self, source, value): """Adds a value from the given source.""" if self.source is None or self.fn(self.value, value): self.value = value self.source = source	[ "def", "addValue", "(", "self", ",", "source", ",", "value", ")", ":", "if", "self", ".", "source", "is", "None", "or", "self", ".", "fn", "(", "self", ".", "value", ",", "value", ")", ":", "self", ".", "value", "=", "value", "self", ".", "source...	37.2	0.015789
def cmyk_to_cmy(c, m=None, y=None, k=None): """Convert the color from CMYK coordinates to CMY. Parameters: :c: The Cyan component value [0...1] :m: The Magenta component value [0...1] :y: The Yellow component value [0...1] :k: The Black component value [0...1] Returns: ...	[ "def", "cmyk_to_cmy", "(", "c", ",", "m", "=", "None", ",", "y", "=", "None", ",", "k", "=", "None", ")", ":", "if", "type", "(", "c", ")", "in", "[", "list", ",", "tuple", "]", ":", "c", ",", "m", ",", "y", ",", "k", "=", "c", "mk", "=...	21	0.010118
def get_table(): """Provides table of scheduling block instance metadata for use with AJAX tables""" response = dict(blocks=[]) block_ids = DB.get_sched_block_instance_ids() for index, block_id in enumerate(block_ids): block = DB.get_block_details([block_id]).__next__() info = [ ...	[ "def", "get_table", "(", ")", ":", "response", "=", "dict", "(", "blocks", "=", "[", "]", ")", "block_ids", "=", "DB", ".", "get_sched_block_instance_ids", "(", ")", "for", "index", ",", "block_id", "in", "enumerate", "(", "block_ids", ")", ":", "block",...	33.933333	0.001912
def remove_reader(self, fd): " Stop watching the file descriptor for read availability. " h = msvcrt.get_osfhandle(fd) if h in self._read_fds: del self._read_fds[h]	[ "def", "remove_reader", "(", "self", ",", "fd", ")", ":", "h", "=", "msvcrt", ".", "get_osfhandle", "(", "fd", ")", "if", "h", "in", "self", ".", "_read_fds", ":", "del", "self", ".", "_read_fds", "[", "h", "]" ]	39.2	0.01
def warp(self, order): """对order/market的封装 [description] Arguments: order {[type]} -- [description] Returns: [type] -- [description] """ # 因为成交模式对时间的封装 if order.order_model == ORDER_MODEL.MARKET: if order.frequence is FREQ...	[ "def", "warp", "(", "self", ",", "order", ")", ":", "# 因为成交模式对时间的封装", "if", "order", ".", "order_model", "==", "ORDER_MODEL", ".", "MARKET", ":", "if", "order", ".", "frequence", "is", "FREQUENCE", ".", "DAY", ":", "# exact_time = str(datetime.datetime.strptime(...	38.115385	0.001229

def compose(self, sources, client=None): """Concatenate source blobs into this one. If :attr:`user_project` is set on the bucket, bills the API request to that project. :type sources: list of :class:`Blob` :param sources: blobs whose contents will be composed into this blob. ...

[ "def", "compose", "(", "self", ",", "sources", ",", "client", "=", "None", ")", ":", "client", "=", "self", ".", "_require_client", "(", "client", ")", "query_params", "=", "{", "}", "if", "self", ".", "user_project", "is", "not", "None", ":", "query_p...

36.28125

0.001678

def strip_agent_context(stmts_in, **kwargs): """Strip any context on agents within each statement. Parameters ---------- stmts_in : list[indra.statements.Statement] A list of statements whose agent context should be stripped. save : Optional[str] The name of a pickle file to save th...

[ "def", "strip_agent_context", "(", "stmts_in", ",", "*", "*", "kwargs", ")", ":", "logger", ".", "info", "(", "'Stripping agent context on %d statements...'", "%", "len", "(", "stmts_in", ")", ")", "stmts_out", "=", "[", "]", "for", "st", "in", "stmts_in", "...

31.40625

0.000965

def SetParametros(self, cuit, token, sign): "Establece un parámetro general" self.Token = token self.Sign = sign self.Cuit = cuit return True

[ "def", "SetParametros", "(", "self", ",", "cuit", ",", "token", ",", "sign", ")", ":", "self", ".", "Token", "=", "token", "self", ".", "Sign", "=", "sign", "self", ".", "Cuit", "=", "cuit", "return", "True" ]

29.333333

0.01105

def destroy(name, conn=None, call=None, kwargs=None): ''' Destroy a VM CLI Examples: .. code-block:: bash salt-cloud -d myminion salt-cloud -a destroy myminion service_name=myservice ''' if call == 'function': raise SaltCloudSystemExit( 'The destroy action ...

[ "def", "destroy", "(", "name", ",", "conn", "=", "None", ",", "call", "=", "None", ",", "kwargs", "=", "None", ")", ":", "if", "call", "==", "'function'", ":", "raise", "SaltCloudSystemExit", "(", "'The destroy action must be called with -d, --destroy, '", "'-a ...

33.637931

0.001743

def google(self, qs): """CSV format suitable for importing into google GMail""" csvf = writer(sys.stdout) csvf.writerow(['Name', 'Email']) for ent in qs: csvf.writerow([full_name(**ent), ent['email']])

[ "def", "google", "(", "self", ",", "qs", ")", ":", "csvf", "=", "writer", "(", "sys", ".", "stdout", ")", "csvf", ".", "writerow", "(", "[", "'Name'", ",", "'Email'", "]", ")", "for", "ent", "in", "qs", ":", "csvf", ".", "writerow", "(", "[", "...

40

0.008163

def build_url (self): """ Call super.build_url(), set default telnet port and initialize the login credentials. """ super(TelnetUrl, self).build_url() # default port if self.port is None: self.port = 23 # set user/pass self.user, self.p...

[ "def", "build_url", "(", "self", ")", ":", "super", "(", "TelnetUrl", ",", "self", ")", ".", "build_url", "(", ")", "# default port", "if", "self", ".", "port", "is", "None", ":", "self", ".", "port", "=", "23", "# set user/pass", "self", ".", "user", ...

31.272727

0.008475

def ScaleSmaller(self): """Decreases the zoom of the graph one step(0.1 units).""" newfactor = self._zoomfactor - 0.1 if float(newfactor) > 0 and float(newfactor) < self._MAX_ZOOM: self._zoomfactor = newfactor

[ "def", "ScaleSmaller", "(", "self", ")", ":", "newfactor", "=", "self", ".", "_zoomfactor", "-", "0.1", "if", "float", "(", "newfactor", ")", ">", "0", "and", "float", "(", "newfactor", ")", "<", "self", ".", "_MAX_ZOOM", ":", "self", ".", "_zoomfactor...

44.6

0.008811

def _get_manager(cluster_info, host, executor_id): """Returns this executor's "singleton" instance of the multiprocessing.Manager, reconnecting per python-worker if needed. Args: :cluster_info: cluster node reservations :host: host IP address :executor_id: unique id per executor (created during initial...

[ "def", "_get_manager", "(", "cluster_info", ",", "host", ",", "executor_id", ")", ":", "for", "node", "in", "cluster_info", ":", "if", "node", "[", "'host'", "]", "==", "host", "and", "node", "[", "'executor_id'", "]", "==", "executor_id", ":", "addr", "...

40.074074

0.01083

def interact(banner=None, readfunc=None, local=None): """Closely emulate the interactive Python interpreter. This is a backwards compatible interface to the InteractiveConsole class. When readfunc is not specified, it attempts to import the readline module to enable GNU readline if it is available. ...

[ "def", "interact", "(", "banner", "=", "None", ",", "readfunc", "=", "None", ",", "local", "=", "None", ")", ":", "console", "=", "InteractiveConsole", "(", "local", ")", "if", "readfunc", "is", "not", "None", ":", "console", ".", "raw_input", "=", "re...

33.391304

0.001266

def rspr(self, disallow_sibling_sprs=False, keep_entire_edge=False, rescale=False): """ Random SPR, with prune and regraft edges chosen randomly, and lengths drawn uniformly from the available edge lengths. N1: disallow_sibling_sprs prevents sprs that don't alter the topology ...

[ "def", "rspr", "(", "self", ",", "disallow_sibling_sprs", "=", "False", ",", "keep_entire_edge", "=", "False", ",", "rescale", "=", "False", ")", ":", "starting_length", "=", "self", ".", "tree", ".", "_tree", ".", "length", "(", ")", "excl", "=", "[", ...

41.658537

0.002288

def set_exception(self, exception): ''' Set an exception to Future object, wake up all the waiters :param exception: exception to set ''' if hasattr(self, '_result'): raise ValueError('Cannot set the result twice') self._result = None self._ex...

[ "def", "set_exception", "(", "self", ",", "exception", ")", ":", "if", "hasattr", "(", "self", ",", "'_result'", ")", ":", "raise", "ValueError", "(", "'Cannot set the result twice'", ")", "self", ".", "_result", "=", "None", "self", ".", "_exception", "=", ...

36.909091

0.012019

def Aitken(s): """Accelerate the convergence of the a series using Aitken's delta-squared process (SCIP calls it Euler). """ def accel(): s0, s1, s2 = s >> item[:3] while 1: yield s2 - (s2 - s1)**2 / (s0 - 2*s1 + s2) s0, s1, s2 = s1, s2, next(s) return accel()

[ "def", "Aitken", "(", "s", ")", ":", "def", "accel", "(", ")", ":", "s0", ",", "s1", ",", "s2", "=", "s", ">>", "item", "[", ":", "3", "]", "while", "1", ":", "yield", "s2", "-", "(", "s2", "-", "s1", ")", "**", "2", "/", "(", "s0", "-"...

26.6

0.036364

def syslog(server, enable=True, host=None, admin_username=None, admin_password=None, module=None): ''' Configure syslog remote logging, by default syslog will automatically be enabled if a server is specified. However, if you want to disable syslog you will need to specify a server followed b...

[ "def", "syslog", "(", "server", ",", "enable", "=", "True", ",", "host", "=", "None", ",", "admin_username", "=", "None", ",", "admin_password", "=", "None", ",", "module", "=", "None", ")", ":", "if", "enable", "and", "__execute_cmd", "(", "'config -g c...

43.6875

0.0007

def except_handle(tokens): """Process except statements.""" if len(tokens) == 1: errs, asname = tokens[0], None elif len(tokens) == 2: errs, asname = tokens else: raise CoconutInternalException("invalid except tokens", tokens) out = "except " if "list" in tokens: ...

[ "def", "except_handle", "(", "tokens", ")", ":", "if", "len", "(", "tokens", ")", "==", "1", ":", "errs", ",", "asname", "=", "tokens", "[", "0", "]", ",", "None", "elif", "len", "(", "tokens", ")", "==", "2", ":", "errs", ",", "asname", "=", "...

26.9375

0.002242

def get_type_data(name): """Return dictionary representation of type. Can be used to initialize primordium.type.primitives.Type """ name = name.upper() try: return { 'authority': 'okapia.net', 'namespace': 'string match types', 'identifier': name, ...

[ "def", "get_type_data", "(", "name", ")", ":", "name", "=", "name", ".", "upper", "(", ")", "try", ":", "return", "{", "'authority'", ":", "'okapia.net'", ",", "'namespace'", ":", "'string match types'", ",", "'identifier'", ":", "name", ",", "'domain'", "...

33.25

0.001462

def save(self, designName=""): # type: (ASaveDesign) -> None """Save the current design to file""" self.try_stateful_function( ss.SAVING, ss.READY, self.do_save, designName)

[ "def", "save", "(", "self", ",", "designName", "=", "\"\"", ")", ":", "# type: (ASaveDesign) -> None", "self", ".", "try_stateful_function", "(", "ss", ".", "SAVING", ",", "ss", ".", "READY", ",", "self", ".", "do_save", ",", "designName", ")" ]

41

0.014354

def issueQueingServiceJobs(self): """Issues any queuing service jobs up to the limit of the maximum allowed.""" while len(self.serviceJobsToBeIssued) > 0 and self.serviceJobsIssued < self.config.maxServiceJobs: self.issueJob(self.serviceJobsToBeIssued.pop()) self.serviceJobsIssue...

[ "def", "issueQueingServiceJobs", "(", "self", ")", ":", "while", "len", "(", "self", ".", "serviceJobsToBeIssued", ")", ">", "0", "and", "self", ".", "serviceJobsIssued", "<", "self", ".", "config", ".", "maxServiceJobs", ":", "self", ".", "issueJob", "(", ...

72.625

0.008503

def _unicode(value): """Converts a string argument to a unicode string. If the argument is already a unicode string or None, it is returned unchanged. Otherwise it must be a byte string and is decoded as utf8. """ if isinstance(value, _TO_UNICODE_TYPES): return value if not isinstance(...

[ "def", "_unicode", "(", "value", ")", ":", "if", "isinstance", "(", "value", ",", "_TO_UNICODE_TYPES", ")", ":", "return", "value", "if", "not", "isinstance", "(", "value", ",", "bytes_type", ")", ":", "raise", "TypeError", "(", "\"Expected bytes, unicode, or ...

35.692308

0.002101

def s2p(self): """Return 2 proton separation energy""" M_P = 7.28897050 # proton mass excess in MeV f = lambda parent, daugther: -parent + daugther + 2 * M_P return self.derived('s2p', (-2, 0), f)

[ "def", "s2p", "(", "self", ")", ":", "M_P", "=", "7.28897050", "# proton mass excess in MeV", "f", "=", "lambda", "parent", ",", "daugther", ":", "-", "parent", "+", "daugther", "+", "2", "*", "M_P", "return", "self", ".", "derived", "(", "'s2p'", ",", ...

46.4

0.012712

def matrix2cube(data_matrix, im_shape): r"""Matrix to Cube This method transforms a 2D matrix to a 3D cube Parameters ---------- data_matrix : np.ndarray Input data cube, 2D array im_shape : tuple 2D shape of the individual images Returns ------- np.ndarray 3D cube...

[ "def", "matrix2cube", "(", "data_matrix", ",", "im_shape", ")", ":", "return", "data_matrix", ".", "T", ".", "reshape", "(", "[", "data_matrix", ".", "shape", "[", "1", "]", "]", "+", "list", "(", "im_shape", ")", ")" ]

20.351351

0.001267

def percentage_of_reoccurring_values_to_all_values(x): """ Returns the ratio of unique values, that are present in the time series more than once. # of data points occurring more than once / # of all data points This means the ratio is normalized to the number of data points in the time series...

[ "def", "percentage_of_reoccurring_values_to_all_values", "(", "x", ")", ":", "if", "not", "isinstance", "(", "x", ",", "pd", ".", "Series", ")", ":", "x", "=", "pd", ".", "Series", "(", "x", ")", "if", "x", ".", "size", "==", "0", ":", "return", "np"...

29.5

0.002345

def lookup(self): """ The meat of this middleware. Returns None and sets settings.SITE_ID if able to find a Site object by domain and its subdomain is valid. Returns an HttpResponsePermanentRedirect to the Site's default subdomain if a site is found but the requested su...

[ "def", "lookup", "(", "self", ")", ":", "# check to see if this hostname is actually a env hostname", "if", "self", ".", "domain", ":", "if", "self", ".", "subdomain", ":", "self", ".", "domain_unsplit", "=", "'%s.%s'", "%", "(", "self", ".", "subdomain", ",", ...

33.408163

0.001187

def sum(self, only_valid=True) -> ErrorValue: """Calculate the sum of pixels, not counting the masked ones if only_valid is True.""" if not only_valid: mask = 1 else: mask = self.mask return ErrorValue((self.intensity * mask).sum(), ((sel...

[ "def", "sum", "(", "self", ",", "only_valid", "=", "True", ")", "->", "ErrorValue", ":", "if", "not", "only_valid", ":", "mask", "=", "1", "else", ":", "mask", "=", "self", ".", "mask", "return", "ErrorValue", "(", "(", "self", ".", "intensity", "*",...

43.5

0.008451

def natural_sort(item): """ Sort strings that contain numbers correctly. >>> l = ['v1.3.12', 'v1.3.3', 'v1.2.5', 'v1.2.15', 'v1.2.3', 'v1.2.1'] >>> l.sort(key=natural_sort) >>> print l "['v1.2.1', 'v1.2.3', 'v1.2.5', 'v1.2.15', 'v1.3.3', 'v1.3.12']" """ if item is None: return 0...

[ "def", "natural_sort", "(", "item", ")", ":", "if", "item", "is", "None", ":", "return", "0", "def", "try_int", "(", "s", ")", ":", "try", ":", "return", "int", "(", "s", ")", "except", "ValueError", ":", "return", "s", "return", "tuple", "(", "map...

26.333333

0.002037

def main(): """ NAME thellier_magic_redo.py DESCRIPTION Calculates paleointensity parameters for thellier-thellier type data using bounds stored in the "redo" file SYNTAX thellier_magic_redo [command line options] OPTIONS -h prints help message -usr...

[ "def", "main", "(", ")", ":", "dir_path", "=", "'.'", "critout", "=", "\"\"", "version_num", "=", "pmag", ".", "get_version", "(", ")", "field", ",", "first_save", "=", "-", "1", ",", "1", "spec", ",", "recnum", ",", "start", ",", "end", "=", "0", ...

49.875

0.026244

def orientation(self, newaxis=None, rotation=0, rad=False): """ Set/Get actor orientation. :param rotation: If != 0 rotate actor around newaxis. :param rad: set to True if angle is in radians. .. hint:: |gyroscope2| |gyroscope2.py|_ """ if rad: rotat...

[ "def", "orientation", "(", "self", ",", "newaxis", "=", "None", ",", "rotation", "=", "0", ",", "rad", "=", "False", ")", ":", "if", "rad", ":", "rotation", "*=", "57.29578", "initaxis", "=", "utils", ".", "versor", "(", "self", ".", "top", "-", "s...

32.344828

0.00207

def to_list_of(self, state): # type: (S) -> List[B] '''Returns a list of all the foci within `state`. Requires kind Fold. This method will raise TypeError if the optic has no way to get any foci. ''' if not self._is_kind(Fold): raise TypeError('Must be an ins...

[ "def", "to_list_of", "(", "self", ",", "state", ")", ":", "# type: (S) -> List[B]", "if", "not", "self", ".", "_is_kind", "(", "Fold", ")", ":", "raise", "TypeError", "(", "'Must be an instance of Fold to .to_list_of()'", ")", "pure", "=", "lambda", "a", ":", ...

35.846154

0.01046

def _process_routers(self, routers, removed_routers, device_id=None, all_routers=False): """Process the set of routers. Iterating on the set of routers received and comparing it with the set of routers already in the routing service helper, new routers which are...

[ "def", "_process_routers", "(", "self", ",", "routers", ",", "removed_routers", ",", "device_id", "=", "None", ",", "all_routers", "=", "False", ")", ":", "try", ":", "ids_previously_hosted_routers", "=", "(", "set", "(", "r_id", "for", "r_id", ",", "rdata",...

48.863248

0.000857

def unholdAction(self): """ Unholds the action from being blocked on the leave event. """ self._actionHeld = False point = self.mapFromGlobal(QCursor.pos()) self.setCurrentAction(self.actionAt(point))

[ "def", "unholdAction", "(", "self", ")", ":", "self", ".", "_actionHeld", "=", "False", "point", "=", "self", ".", "mapFromGlobal", "(", "QCursor", ".", "pos", "(", ")", ")", "self", ".", "setCurrentAction", "(", "self", ".", "actionAt", "(", "point", ...

32.125

0.011364

def as_constraint(cls, constraint, model, constraint_type=None, **init_kwargs): """ Initiate a Model which should serve as a constraint. Such a constraint-model should be initiated with knowledge of another ``BaseModel``, from which it will take its parameters:: model = Mode...

[ "def", "as_constraint", "(", "cls", ",", "constraint", ",", "model", ",", "constraint_type", "=", "None", ",", "*", "*", "init_kwargs", ")", ":", "allowed_types", "=", "[", "sympy", ".", "Eq", ",", "sympy", ".", "Ge", ",", "sympy", ".", "Le", "]", "i...

42.661017

0.000777

def from_boto_instance(cls, instance): """ Loads a ``HostEntry`` from a boto instance. :param instance: A boto instance object. :type instance: :py:class:`boto.ec2.instanceInstance` :rtype: :py:class:`HostEntry` """ return cls( name=instance.tags.get...

[ "def", "from_boto_instance", "(", "cls", ",", "instance", ")", ":", "return", "cls", "(", "name", "=", "instance", ".", "tags", ".", "get", "(", "'Name'", ")", ",", "private_ip", "=", "instance", ".", "private_ip_address", ",", "public_ip", "=", "instance"...

40.791667

0.001996

def full(self, name, fill_value, **kwargs): """Create an array. Keyword arguments as per :func:`zarr.creation.full`.""" return self._write_op(self._full_nosync, name, fill_value, **kwargs)

[ "def", "full", "(", "self", ",", "name", ",", "fill_value", ",", "*", "*", "kwargs", ")", ":", "return", "self", ".", "_write_op", "(", "self", ".", "_full_nosync", ",", "name", ",", "fill_value", ",", "*", "*", "kwargs", ")" ]

52.25

0.009434

def aggregate_gradients_using_copy_with_device_selection( tower_grads, avail_devices, use_mean=True, check_inf_nan=False): """Aggregate gradients, controlling device for the aggregation. Args: tower_grads: List of lists of (gradient, variable) tuples. The outer list is over towers. The inner li...

[ "def", "aggregate_gradients_using_copy_with_device_selection", "(", "tower_grads", ",", "avail_devices", ",", "use_mean", "=", "True", ",", "check_inf_nan", "=", "False", ")", ":", "agg_grads", "=", "[", "]", "has_nan_or_inf_list", "=", "[", "]", "for", "i", ",", ...

46.666667

0.000875

def check_overlap(current, hit, overlap = 200): """ determine if sequence has already hit the same part of the model, indicating that this hit is for another 16S rRNA gene """ for prev in current: p_coords = prev[2:4] coords = hit[2:4] if get_overlap(coords, p_coords) >= over...

[ "def", "check_overlap", "(", "current", ",", "hit", ",", "overlap", "=", "200", ")", ":", "for", "prev", "in", "current", ":", "p_coords", "=", "prev", "[", "2", ":", "4", "]", "coords", "=", "hit", "[", "2", ":", "4", "]", "if", "get_overlap", "...

32.272727

0.008219

def _prepend_name(self, prefix, dict_): '''changes the keys of the dictionary prepending them with "name."''' return dict(['.'.join([prefix, name]), msg] for name, msg in dict_.iteritems())

[ "def", "_prepend_name", "(", "self", ",", "prefix", ",", "dict_", ")", ":", "return", "dict", "(", "[", "'.'", ".", "join", "(", "[", "prefix", ",", "name", "]", ")", ",", "msg", "]", "for", "name", ",", "msg", "in", "dict_", ".", "iteritems", "(...

55.5

0.008889

def save_module(self, path, module, change_time=None): """Saves the specified module and its contents to the file system so that it doesn't have to be parsed again unless it has changed.""" #First, get a list of the module paths that have already been #pickled. We will add to that list ...

[ "def", "save_module", "(", "self", ",", "path", ",", "module", ",", "change_time", "=", "None", ")", ":", "#First, get a list of the module paths that have already been ", "#pickled. We will add to that list of pickling this module.", "if", "settings", ".", "use_filesystem_cach...

36.64

0.008511

def partially_matched_crossover(random, mom, dad, args): """Return the offspring of partially matched crossover on the candidates. This function performs partially matched crossover (PMX). This type of crossover assumes that candidates are composed of discrete values that are permutations of a given se...

[ "def", "partially_matched_crossover", "(", "random", ",", "mom", ",", "dad", ",", "args", ")", ":", "crossover_rate", "=", "args", ".", "setdefault", "(", "'crossover_rate'", ",", "1.0", ")", "if", "random", ".", "random", "(", ")", "<", "crossover_rate", ...

36.769231

0.002038

def poke(self, context): """ Execute the bash command in a temporary directory which will be cleaned afterwards """ bash_command = self.bash_command self.log.info("Tmp dir root location: \n %s", gettempdir()) with TemporaryDirectory(prefix='airflowtmp') as tmp_dir...

[ "def", "poke", "(", "self", ",", "context", ")", ":", "bash_command", "=", "self", ".", "bash_command", "self", ".", "log", ".", "info", "(", "\"Tmp dir root location: \\n %s\"", ",", "gettempdir", "(", ")", ")", "with", "TemporaryDirectory", "(", "prefix", ...

41.09375

0.002229

def load_notebook(self, name): """Loads a notebook file into memory.""" with open(self.get_path('%s.ipynb'%name)) as f: nb = nbformat.read(f, as_version=4) return nb,f

[ "def", "load_notebook", "(", "self", ",", "name", ")", ":", "with", "open", "(", "self", ".", "get_path", "(", "'%s.ipynb'", "%", "name", ")", ")", "as", "f", ":", "nb", "=", "nbformat", ".", "read", "(", "f", ",", "as_version", "=", "4", ")", "r...

33.166667

0.019608

def mouseMoveEvent( self, event ): """ Sets the value for the slider at the event position. :param event | <QMouseEvent> """ self.setValue(self.valueAt(event.pos().x()))

[ "def", "mouseMoveEvent", "(", "self", ",", "event", ")", ":", "self", ".", "setValue", "(", "self", ".", "valueAt", "(", "event", ".", "pos", "(", ")", ".", "x", "(", ")", ")", ")" ]

31.857143

0.021834

def _var_isomorphic(a, b, check_varprops=True): """ Two Xmrs objects are isomorphic if they have the same structure as determined by variable linkages between preds. """ # first some quick checks if len(a.eps()) != len(b.eps()): return False if len(a.variables()) != len(b.variables()): retur...

[ "def", "_var_isomorphic", "(", "a", ",", "b", ",", "check_varprops", "=", "True", ")", ":", "# first some quick checks", "if", "len", "(", "a", ".", "eps", "(", ")", ")", "!=", "len", "(", "b", ".", "eps", "(", ")", ")", ":", "return", "False", "if...

35.269231

0.002122

def FibreMode(gridSize,modeDiameter): """ Return a pupil-plane Gaussian mode with 1/e diameter given by *modeDiameter*, normalised so that integral power over the mode is unity """ rmode=modeDiameter/2 return np.exp(-(RadiusGrid(gridSize)/rmode)**2)/(np.sqrt(np.pi/2)*rmode)

[ "def", "FibreMode", "(", "gridSize", ",", "modeDiameter", ")", ":", "rmode", "=", "modeDiameter", "/", "2", "return", "np", ".", "exp", "(", "-", "(", "RadiusGrid", "(", "gridSize", ")", "/", "rmode", ")", "**", "2", ")", "/", "(", "np", ".", "sqrt...

41.857143

0.013378

def get_name_levels(node): """Return a list of ``(name, level)`` tuples for assigned names The `level` is `None` for simple assignments and is a list of numbers for tuple assignments for example in:: a, (b, c) = x The levels for for `a` is ``[0]``, for `b` is ``[1, 0]`` and for `c` is ``[1,...

[ "def", "get_name_levels", "(", "node", ")", ":", "visitor", "=", "_NodeNameCollector", "(", ")", "ast", ".", "walk", "(", "node", ",", "visitor", ")", "return", "visitor", ".", "names" ]

27.266667

0.002364

def iodp_kly4s_lore(kly4s_file, meas_out='measurements.txt', spec_infile='specimens.txt', spec_out='specimens.txt', instrument='IODP-KLY4S', actual_volume="",dir_path='.', input_dir_path=''): """ Converts ascii files generated by SUFAR ver.4.0 and downloaded from the LIMS online repos...

[ "def", "iodp_kly4s_lore", "(", "kly4s_file", ",", "meas_out", "=", "'measurements.txt'", ",", "spec_infile", "=", "'specimens.txt'", ",", "spec_out", "=", "'specimens.txt'", ",", "instrument", "=", "'IODP-KLY4S'", ",", "actual_volume", "=", "\"\"", ",", "dir_path", ...

45.509091

0.02007

def p_field_optional2_4(self, p): """ field : alias name selection_set """ p[0] = Field(name=p[2], alias=p[1], selections=p[3])

[ "def", "p_field_optional2_4", "(", "self", ",", "p", ")", ":", "p", "[", "0", "]", "=", "Field", "(", "name", "=", "p", "[", "2", "]", ",", "alias", "=", "p", "[", "1", "]", ",", "selections", "=", "p", "[", "3", "]", ")" ]

31

0.012579

def name_replace(self, to_replace, replacement): """Replaces part of tag name with new value""" self.name = self.name.replace(to_replace, replacement)

[ "def", "name_replace", "(", "self", ",", "to_replace", ",", "replacement", ")", ":", "self", ".", "name", "=", "self", ".", "name", ".", "replace", "(", "to_replace", ",", "replacement", ")" ]

54.666667

0.012048

def write_across_link(self, address, data, x, y, link): """Write a bytestring to an address in memory on a neigbouring chip. .. warning:: This function is intended for low-level debug use only and is not optimised for performance nor intended for more general use. This...

[ "def", "write_across_link", "(", "self", ",", "address", ",", "data", ",", "x", ",", "y", ",", "link", ")", ":", "if", "address", "%", "4", ":", "raise", "ValueError", "(", "\"Addresses must be word-aligned.\"", ")", "if", "len", "(", "data", ")", "%", ...

41.673077

0.000902

def search(cls, query, search_opts=None): """ Search tags. For more information, see the backend function :py:func:`nipap.backend.Nipap.search_tag`. """ if search_opts is None: search_opts = {} xmlrpc = XMLRPCConnection() try: se...

[ "def", "search", "(", "cls", ",", "query", ",", "search_opts", "=", "None", ")", ":", "if", "search_opts", "is", "None", ":", "search_opts", "=", "{", "}", "xmlrpc", "=", "XMLRPCConnection", "(", ")", "try", ":", "search_result", "=", "xmlrpc", ".", "c...

30.607143

0.002262

def _commit_with_retry(client, write_pbs, transaction_id): """Call ``Commit`` on the GAPIC client with retry / sleep. Retries the ``Commit`` RPC on Unavailable. Usually this RPC-level retry is handled by the underlying GAPICd client, but in this case it doesn't because ``Commit`` is not always idempote...

[ "def", "_commit_with_retry", "(", "client", ",", "write_pbs", ",", "transaction_id", ")", ":", "current_sleep", "=", "_INITIAL_SLEEP", "while", "True", ":", "try", ":", "return", "client", ".", "_firestore_api", ".", "commit", "(", "client", ".", "_database_stri...

37.75

0.000646

def _get_keywords(self, **kwargs): """Format GET request parameters and keywords.""" if self.jurisdiction and 'jurisdiction_id' not in kwargs: kwargs['jurisdiction_id'] = self.jurisdiction if 'count' in kwargs: kwargs['page_size'] = kwargs.pop('count') if 'start' ...

[ "def", "_get_keywords", "(", "self", ",", "*", "*", "kwargs", ")", ":", "if", "self", ".", "jurisdiction", "and", "'jurisdiction_id'", "not", "in", "kwargs", ":", "kwargs", "[", "'jurisdiction_id'", "]", "=", "self", ".", "jurisdiction", "if", "'count'", "...

41.285714

0.002255

def add_or_update(self, app_id): ''' Add or update the category. ''' logger.info('Collect info: user-{0}, uid-{1}'.format(self.userinfo.uid, app_id)) MCollect.add_or_update(self.userinfo.uid, app_id) out_dic = {'success': True} return json.dump(out_dic, self)

[ "def", "add_or_update", "(", "self", ",", "app_id", ")", ":", "logger", ".", "info", "(", "'Collect info: user-{0}, uid-{1}'", ".", "format", "(", "self", ".", "userinfo", ".", "uid", ",", "app_id", ")", ")", "MCollect", ".", "add_or_update", "(", "self", ...

38.5

0.009524

def create(cls, train_ds, valid_ds, test_ds=None, path:PathOrStr='.', no_check:bool=False, bs=64, val_bs:int=None, num_workers:int=0, device:torch.device=None, collate_fn:Callable=data_collate, dl_tfms:Optional[Collection[Callable]]=None, bptt:int=70, backwards:bool=False, **dl_kwargs) -> ...

[ "def", "create", "(", "cls", ",", "train_ds", ",", "valid_ds", ",", "test_ds", "=", "None", ",", "path", ":", "PathOrStr", "=", "'.'", ",", "no_check", ":", "bool", "=", "False", ",", "bs", "=", "64", ",", "val_bs", ":", "int", "=", "None", ",", ...

89.545455

0.045226

def generate_non_rabs(self): """ Shrink the non-Rab DB size by reducing sequence redundancy. """ logging.info('Building non-Rab DB') run_cmd([self.pathfinder['cd-hit'], '-i', self.path['non_rab_db'], '-o', self.output['non_rab_db'], '-d', '100', '-c', str(config['param'...

[ "def", "generate_non_rabs", "(", "self", ")", ":", "logging", ".", "info", "(", "'Building non-Rab DB'", ")", "run_cmd", "(", "[", "self", ".", "pathfinder", "[", "'cd-hit'", "]", ",", "'-i'", ",", "self", ".", "path", "[", "'non_rab_db'", "]", ",", "'-o...

54.125

0.009091

def ServiceWorker_dispatchSyncEvent(self, origin, registrationId, tag, lastChance): """ Function path: ServiceWorker.dispatchSyncEvent Domain: ServiceWorker Method name: dispatchSyncEvent Parameters: Required arguments: 'origin' (type: string) -> No description 'registrationId' (type:...

[ "def", "ServiceWorker_dispatchSyncEvent", "(", "self", ",", "origin", ",", "registrationId", ",", "tag", ",", "lastChance", ")", ":", "assert", "isinstance", "(", "origin", ",", "(", "str", ",", ")", ")", ",", "\"Argument 'origin' must be of type '['str']'. Received...

37.21875

0.047463

def skipDryRun(logger, dryRun, level=logging.DEBUG): """ Return logging function. When logging function called, will return True if action should be skipped. Log will indicate if skipped because of dry run. """ # This is an undocumented "feature" of logging module: # logging.log() requires a nu...

[ "def", "skipDryRun", "(", "logger", ",", "dryRun", ",", "level", "=", "logging", ".", "DEBUG", ")", ":", "# This is an undocumented \"feature\" of logging module:", "# logging.log() requires a numeric level", "# logging.getLevelName() maps names to numbers", "if", "not", "isins...

38.6

0.001686

def size(self): """ Returns the size of the belief state. Initially if there are $n$ consistent members, (the result of `self.number_of_singleton_referents()`) then there are generally $2^{n}-1$ valid belief states. """ n = self.number_of_singleton_referents() targets =...

[ "def", "size", "(", "self", ")", ":", "n", "=", "self", ".", "number_of_singleton_referents", "(", ")", "targets", "=", "list", "(", "self", ".", "iter_referents_tuples", "(", ")", ")", "n_targets", "=", "len", "(", "targets", ")", "if", "n", "==", "0"...

39.111111

0.009709

def decode(self, encoded_packet): """Decode a transmitted package. The return value indicates how many binary attachment packets are necessary to fully decode the packet. """ ep = encoded_packet try: self.packet_type = int(ep[0:1]) except TypeError: ...

[ "def", "decode", "(", "self", ",", "encoded_packet", ")", ":", "ep", "=", "encoded_packet", "try", ":", "self", ".", "packet_type", "=", "int", "(", "ep", "[", "0", ":", "1", "]", ")", "except", "TypeError", ":", "self", ".", "packet_type", "=", "ep"...

31.435897

0.001582

def create_size_estimators(): """Create a dict of name to a function that returns an estimated size for a given target. The estimated size is used to build the largest targets first (subject to dependency constraints). Choose 'random' to choose random sizes for each target, which may be useful for distributed ...

[ "def", "create_size_estimators", "(", ")", ":", "def", "line_count", "(", "filename", ")", ":", "with", "open", "(", "filename", ",", "'rb'", ")", "as", "fh", ":", "return", "sum", "(", "1", "for", "line", "in", "fh", ")", "return", "{", "'linecount'",...

42.666667

0.010191

def register_aggregations(): """Register sample aggregations.""" return [dict( aggregation_name='file-download-agg', templates='invenio_stats.contrib.aggregations.aggr_file_download', aggregator_class=StatAggregator, aggregator_config=dict( client=current_search_clien...

[ "def", "register_aggregations", "(", ")", ":", "return", "[", "dict", "(", "aggregation_name", "=", "'file-download-agg'", ",", "templates", "=", "'invenio_stats.contrib.aggregations.aggr_file_download'", ",", "aggregator_class", "=", "StatAggregator", ",", "aggregator_conf...

38

0.000641

def _named_tuple_converter(tuple_type): # type: (Type[Tuple]) -> _AggregateConverter """Return an _AggregateConverter for named tuples of the given type.""" def _from_dict(dict_value): if dict_value: return tuple_type(**dict_value) # Cannot construct a namedtuple value from an e...

[ "def", "_named_tuple_converter", "(", "tuple_type", ")", ":", "# type: (Type[Tuple]) -> _AggregateConverter", "def", "_from_dict", "(", "dict_value", ")", ":", "if", "dict_value", ":", "return", "tuple_type", "(", "*", "*", "dict_value", ")", "# Cannot construct a named...

29.666667

0.001815

async def cas(self, value: Any, **kwargs) -> bool: """ Checks and sets the specified value for the locked key. If the value has changed since the lock was created, it will raise an :class:`aiocache.lock.OptimisticLockError` exception. :raises: :class:`aiocache.lock.OptimisticLoc...

[ "async", "def", "cas", "(", "self", ",", "value", ":", "Any", ",", "*", "*", "kwargs", ")", "->", "bool", ":", "success", "=", "await", "self", ".", "client", ".", "set", "(", "self", ".", "key", ",", "value", ",", "_cas_token", "=", "self", ".",...

45.416667

0.010791

def links(self): """Get all links. Returns: list[gkeepapi.node.WebLink]: A list of links. """ return [annotation for annotation in self._annotations.values() if isinstance(annotation, WebLink) ]

[ "def", "links", "(", "self", ")", ":", "return", "[", "annotation", "for", "annotation", "in", "self", ".", "_annotations", ".", "values", "(", ")", "if", "isinstance", "(", "annotation", ",", "WebLink", ")", "]" ]

27.888889

0.015444

def convert_dist(feed: "Feed", new_dist_units: str) -> "Feed": """ Convert the distances recorded in the ``shape_dist_traveled`` columns of the given Feed to the given distance units. New distance units must lie in :const:`.constants.DIST_UNITS`. Return the resulting feed. """ feed = feed.co...

[ "def", "convert_dist", "(", "feed", ":", "\"Feed\"", ",", "new_dist_units", ":", "str", ")", "->", "\"Feed\"", ":", "feed", "=", "feed", ".", "copy", "(", ")", "if", "feed", ".", "dist_units", "==", "new_dist_units", ":", "# Nothing to do", "return", "feed...

31.37931

0.001066

def tange_debyetemp(v, v0, gamma0, a, b, theta0): """ calculate Debye temperature for the Tange equation :param v: unit-cell volume in A^3 :param v0: unit-cell volume in A^3 at 1 bar :param gamma0: Gruneisen parameter at 1 bar :param a: volume-independent adjustable parameters :param b: vol...

[ "def", "tange_debyetemp", "(", "v", ",", "v0", ",", "gamma0", ",", "a", ",", "b", ",", "theta0", ")", ":", "x", "=", "v", "/", "v0", "gamma", "=", "tange_grun", "(", "v", ",", "v0", ",", "gamma0", ",", "a", ",", "b", ")", "if", "isuncertainties...

37.714286

0.001232

def __updateJobResultsPeriodic(self): """ Periodic check to see if this is the best model. This should only have an effect if this is the *first* model to report its progress """ if self._isBestModelStored and not self._isBestModel: return while True: jobResultsStr = self._jobsDAO.j...

[ "def", "__updateJobResultsPeriodic", "(", "self", ")", ":", "if", "self", ".", "_isBestModelStored", "and", "not", "self", ".", "_isBestModel", ":", "return", "while", "True", ":", "jobResultsStr", "=", "self", ".", "_jobsDAO", ".", "jobGetFields", "(", "self"...

37.288462

0.015578

def conglomerate(self, messages, **config): """ Given N messages, return another list that has some of them grouped together into a common 'item'. A conglomeration of messages should be of the following form:: { 'subtitle': 'relrod pushed commits to ghc and 487 other pack...

[ "def", "conglomerate", "(", "self", ",", "messages", ",", "*", "*", "config", ")", ":", "for", "conglomerator", "in", "self", ".", "conglomerator_objects", ":", "messages", "=", "conglomerator", ".", "conglomerate", "(", "messages", ",", "*", "*", "config", ...

41.095238

0.001132

def _collect(self, lines): """ This routine reads the following from the Siesta file: - atomic positions - cell_parameters - atomic_species """ for tag,value,unit in re.findall( '([\.A-Za-z]+)\s+%s\s+([A-Za-z]+)?' % self._num_re...

[ "def", "_collect", "(", "self", ",", "lines", ")", ":", "for", "tag", ",", "value", ",", "unit", "in", "re", ".", "findall", "(", "'([\\.A-Za-z]+)\\s+%s\\s+([A-Za-z]+)?'", "%", "self", ".", "_num_regex", ",", "lines", ")", ":", "tag", "=", "tag", ".", ...

45.52459

0.01128

def trace_memory_start(self): """ Starts measuring memory consumption """ self.trace_memory_clean_caches() objgraph.show_growth(limit=30) gc.collect() self._memory_start = self.worker.get_memory()["total"]

[ "def", "trace_memory_start", "(", "self", ")", ":", "self", ".", "trace_memory_clean_caches", "(", ")", "objgraph", ".", "show_growth", "(", "limit", "=", "30", ")", "gc", ".", "collect", "(", ")", "self", ".", "_memory_start", "=", "self", ".", "worker", ...

26.666667

0.008065

def authorize(login, password, scopes, note='', note_url='', client_id='', client_secret='', two_factor_callback=None): """Obtain an authorization token for the GitHub API. :param str login: (required) :param str password: (required) :param list scopes: (required), areas you want this tok...

[ "def", "authorize", "(", "login", ",", "password", ",", "scopes", ",", "note", "=", "''", ",", "note_url", "=", "''", ",", "client_id", "=", "''", ",", "client_secret", "=", "''", ",", "two_factor_callback", "=", "None", ")", ":", "gh", "=", "GitHub", ...

46.826087

0.00091

def lcsubstrings(seq1, seq2, positions=False): """Find the longest common substring(s) in the sequences `seq1` and `seq2`. If positions evaluates to `True` only their positions will be returned, together with their length, in a tuple: (length, [(start pos in seq1, start pos in seq2)..]) Otherwise, the subst...

[ "def", "lcsubstrings", "(", "seq1", ",", "seq2", ",", "positions", "=", "False", ")", ":", "L1", ",", "L2", "=", "len", "(", "seq1", ")", ",", "len", "(", "seq2", ")", "ms", "=", "[", "]", "mlen", "=", "last", "=", "0", "if", "L1", "<", "L2",...

23.717391

0.047535

def copy(self, target): """Copies this file the `target`, which might be a directory. The permissions are copied. """ shutil.copy(self.path, self._to_backend(target))

[ "def", "copy", "(", "self", ",", "target", ")", ":", "shutil", ".", "copy", "(", "self", ".", "path", ",", "self", ".", "_to_backend", "(", "target", ")", ")" ]

32.333333

0.01005

def get_pod_container(self, volume_mounts, persistence_outputs=None, persistence_data=None, outputs_refs_jobs=None, outputs_refs_experiments=None, secret_refs=None,...

[ "def", "get_pod_container", "(", "self", ",", "volume_mounts", ",", "persistence_outputs", "=", "None", ",", "persistence_data", "=", "None", ",", "outputs_refs_jobs", "=", "None", ",", "outputs_refs_experiments", "=", "None", ",", "secret_refs", "=", "None", ",",...

44.113636

0.008569

def get_channel_comment(self, name=None, group=None, index=None): """Gets channel comment. Channel can be specified in two ways: * using the first positional argument *name* * if there are multiple occurrences for this channel then the *group* and *index* arguments c...

[ "def", "get_channel_comment", "(", "self", ",", "name", "=", "None", ",", "group", "=", "None", ",", "index", "=", "None", ")", ":", "gp_nr", ",", "ch_nr", "=", "self", ".", "_validate_channel_selection", "(", "name", ",", "group", ",", "index", ")", "...

29.581395

0.001522

def export_java( self, java_template=JAVA_TEMPLATE, java_indent=JAVA_INDENTATION, java_package=JAVA_PACKAGE, is_public=True): '''Export the grammar to a Java file which can be used with the jleri module.''' language = [] enums ...

[ "def", "export_java", "(", "self", ",", "java_template", "=", "JAVA_TEMPLATE", ",", "java_indent", "=", "JAVA_INDENTATION", ",", "java_package", "=", "JAVA_PACKAGE", ",", "is_public", "=", "True", ")", ":", "language", "=", "[", "]", "enums", "=", "set", "("...

36.323077

0.000825

def infer_namespace(ac): """Infer the single namespace of the given accession This function is convenience wrapper around infer_namespaces(). Returns: * None if no namespaces are inferred * The (single) namespace if only one namespace is inferred * Raises an exception if more than one nam...

[ "def", "infer_namespace", "(", "ac", ")", ":", "namespaces", "=", "infer_namespaces", "(", "ac", ")", "if", "not", "namespaces", ":", "return", "None", "if", "len", "(", "namespaces", ")", ">", "1", ":", "raise", "BioutilsError", "(", "\"Multiple namespaces ...

28.277778

0.00095

def stop(self): """Stop the timer.""" dd = time() - self._start self.ms = int(round(1000 * dd))

[ "def", "stop", "(", "self", ")", ":", "dd", "=", "time", "(", ")", "-", "self", ".", "_start", "self", ".", "ms", "=", "int", "(", "round", "(", "1000", "*", "dd", ")", ")" ]

29

0.016807

def should_use(intersection): """Check if an intersection can be used as part of a curved polygon. Will return :data:`True` if the intersection is classified as :attr:`~.IntersectionClassification.FIRST`, :attr:`~.IntersectionClassification.SECOND` or :attr:`~.IntersectionClassification.COINCIDENT`...

[ "def", "should_use", "(", "intersection", ")", ":", "if", "intersection", ".", "interior_curve", "in", "ACCEPTABLE_CLASSIFICATIONS", ":", "return", "True", "if", "intersection", ".", "interior_curve", "in", "TANGENT_CLASSIFICATIONS", ":", "return", "intersection", "."...

37

0.001098

def _write(self, data, length, progress_callback=None): """Sends the data to the device, tracking progress with the callback.""" if progress_callback: progress = self._handle_progress(length, progress_callback) six.next(progress) while length: tmp = data.read(FASTBOOT_DOWNLOAD_CHUNK_SIZE_K...

[ "def", "_write", "(", "self", ",", "data", ",", "length", ",", "progress_callback", "=", "None", ")", ":", "if", "progress_callback", ":", "progress", "=", "self", ".", "_handle_progress", "(", "length", ",", "progress_callback", ")", "six", ".", "next", "...

35.833333

0.015873

def get_file_range(ase, offsets, timeout=None): # type: (blobxfer.models.azure.StorageEntity, # blobxfer.models.download.Offsets, int) -> bytes """Retrieve file range :param blobxfer.models.azure.StorageEntity ase: Azure StorageEntity :param blobxfer.models.download.Offsets offsets: download ...

[ "def", "get_file_range", "(", "ase", ",", "offsets", ",", "timeout", "=", "None", ")", ":", "# type: (blobxfer.models.azure.StorageEntity,", "# blobxfer.models.download.Offsets, int) -> bytes", "dir", ",", "fpath", ",", "_", "=", "parse_file_path", "(", "ase", "....

37.714286

0.001232

def skip_class_parameters(): """ Can be used with :meth:`add_parametric_object_params`, this removes duplicate variables cluttering the sphinx docs. This is only intended to be used with *sphinx autodoc* In your *sphinx* ``config.py`` file:: from cqparts.utils.sphinx import skip_class_par...

[ "def", "skip_class_parameters", "(", ")", ":", "from", ".", ".", "params", "import", "Parameter", "def", "callback", "(", "app", ",", "what", ",", "name", ",", "obj", ",", "skip", ",", "options", ")", ":", "if", "(", "what", "==", "'class'", ")", "an...

29.681818

0.001484

def _get_taxon(taxon): """Return Interacting taxon ID | optional | 0 or 1 | gaf column 13.""" if not taxon: return None ## assert taxon[:6] == 'taxon:', 'UNRECOGNIZED Taxon({Taxon})'.format(Taxon=taxon) ## taxid = taxon[6:] ## assert taxon[:10] == 'NCBITaxon:', 'UNREC...

[ "def", "_get_taxon", "(", "taxon", ")", ":", "if", "not", "taxon", ":", "return", "None", "## assert taxon[:6] == 'taxon:', 'UNRECOGNIZED Taxon({Taxon})'.format(Taxon=taxon)", "## taxid = taxon[6:]", "## assert taxon[:10] == 'NCBITaxon:', 'UNRECOGNIZED Taxon({Taxon})'.format(Taxon=taxon)...

45.769231

0.01318

def get_type_name(type_name, sub_type=None): """ Returns a c# type according to a spec type """ if type_name == "enum": return type_name elif type_name == "boolean": return "bool" elif type_name == "integer": return "long" elif type_name == "time": return "long" ...

[ "def", "get_type_name", "(", "type_name", ",", "sub_type", "=", "None", ")", ":", "if", "type_name", "==", "\"enum\"", ":", "return", "type_name", "elif", "type_name", "==", "\"boolean\"", ":", "return", "\"bool\"", "elif", "type_name", "==", "\"integer\"", ":...

24.8

0.001942

def from_ashrae_dict_cooling(cls, ashrae_dict, location, use_010=False, pressure=None, tau=None): """Create a heating design day object from a ASHRAE HOF dictionary. Args: ashrae_dict: A dictionary with 32 keys that match those in the cooling...

[ "def", "from_ashrae_dict_cooling", "(", "cls", ",", "ashrae_dict", ",", "location", ",", "use_010", "=", "False", ",", "pressure", "=", "None", ",", "tau", "=", "None", ")", ":", "db_key", "=", "'DB004'", "if", "use_010", "is", "False", "else", "'DB010'", ...

58.648649

0.002267

def template_engine(self, entry, startnode): """The format template interpetation engine. See the comment at the beginning of this module for the how we interpret format specifications such as %c, %C, and so on. """ # print("-----") # print(startnode) # print(en...

[ "def", "template_engine", "(", "self", ",", "entry", ",", "startnode", ")", ":", "# print(\"-----\")", "# print(startnode)", "# print(entry[0])", "# print('======')", "startnode_start", "=", "len", "(", "self", ".", "f", ".", "getvalue", "(", ")", ")", "start", ...

36.617834

0.002202

def absolute_symlink(source_path, target_path): """Create a symlink at target pointing to source using the absolute path. :param source_path: Absolute path to source file :param target_path: Absolute path to intended symlink :raises ValueError if source_path or link_path are not unique, absolute paths :raise...

[ "def", "absolute_symlink", "(", "source_path", ",", "target_path", ")", ":", "if", "not", "os", ".", "path", ".", "isabs", "(", "source_path", ")", ":", "raise", "ValueError", "(", "\"Path for source : {} must be absolute\"", ".", "format", "(", "source_path", "...

44.153846

0.011083

def month_interval(year, month, return_str=False): """ Usage Example:: >>> timewrapper.day_interval(2014, 12) (datetime(2014, 12, 1, 0, 0, 0), datetime(2014, 12, 31, 23, 59, 59)) """ if month == 12: start, end = datetime(year, month, ...

[ "def", "month_interval", "(", "year", ",", "month", ",", "return_str", "=", "False", ")", ":", "if", "month", "==", "12", ":", "start", ",", "end", "=", "datetime", "(", "year", ",", "month", ",", "1", ")", ",", "datetime", "(", "year", "+", "1", ...

34.823529

0.013158

def readheaders(self): """Read header lines. Read header lines up to the entirely blank line that terminates them. The (normally blank) line that ends the headers is skipped, but not included in the returned list. If a non-header line ends the headers, (which is an error), an a...

[ "def", "readheaders", "(", "self", ")", ":", "self", ".", "dict", "=", "{", "}", "self", ".", "unixfrom", "=", "''", "self", ".", "headers", "=", "lst", "=", "[", "]", "self", ".", "status", "=", "''", "headerseen", "=", "\"\"", "firstline", "=", ...

39.240506

0.000629

def read(fobj, **kwargs): """Read a WAV file into a `TimeSeries` Parameters ---------- fobj : `file`, `str` open file-like object or filename to read from **kwargs all keyword arguments are passed onto :func:`scipy.io.wavfile.read` See also -------- scipy.io.wavfile.re...

[ "def", "read", "(", "fobj", ",", "*", "*", "kwargs", ")", ":", "fsamp", ",", "arr", "=", "wavfile", ".", "read", "(", "fobj", ",", "*", "*", "kwargs", ")", "return", "TimeSeries", "(", "arr", ",", "sample_rate", "=", "fsamp", ")" ]

24.826087

0.001686

def _yum_pkginfo(output): ''' Parse yum/dnf output (which could contain irregular line breaks if package names are long) retrieving the name, version, etc., and return a list of pkginfo namedtuples. ''' cur = {} keys = itertools.cycle(('name', 'version', 'repoid')) values = salt.utils.it...

[ "def", "_yum_pkginfo", "(", "output", ")", ":", "cur", "=", "{", "}", "keys", "=", "itertools", ".", "cycle", "(", "(", "'name'", ",", "'version'", ",", "'repoid'", ")", ")", "values", "=", "salt", ".", "utils", ".", "itertools", ".", "split", "(", ...

41.75

0.00065

def p_delays_floatnumber(self, p): 'delays : DELAY floatnumber' p[0] = DelayStatement(FloatConst( p[2], lineno=p.lineno(1)), lineno=p.lineno(1)) p.set_lineno(0, p.lineno(1))

[ "def", "p_delays_floatnumber", "(", "self", ",", "p", ")", ":", "p", "[", "0", "]", "=", "DelayStatement", "(", "FloatConst", "(", "p", "[", "2", "]", ",", "lineno", "=", "p", ".", "lineno", "(", "1", ")", ")", ",", "lineno", "=", "p", ".", "li...

41

0.009569

def _mk_connectivity_flats(self, i12, j1, j2, mat_data, flats, elev, mag): """ Helper function for _mk_adjacency_matrix. This calcualtes the connectivity for flat regions. Every pixel in the flat will drain to a random pixel in the flat. This accumulates all the area in the flat ...

[ "def", "_mk_connectivity_flats", "(", "self", ",", "i12", ",", "j1", ",", "j2", ",", "mat_data", ",", "flats", ",", "elev", ",", "mag", ")", ":", "nn", ",", "mm", "=", "flats", ".", "shape", "NN", "=", "np", ".", "prod", "(", "flats", ".", "shape...

45.683824

0.000945

def fake_exc_info(exc_info, filename, lineno): """Helper for `translate_exception`.""" exc_type, exc_value, tb = exc_info # figure the real context out if tb is not None: # if there is a local called __tonnikala_exception__, we get # rid of it to not break the debug functionality. ...

[ "def", "fake_exc_info", "(", "exc_info", ",", "filename", ",", "lineno", ")", ":", "exc_type", ",", "exc_value", ",", "tb", "=", "exc_info", "# figure the real context out", "if", "tb", "is", "not", "None", ":", "# if there is a local called __tonnikala_exception__, w...

37.226667

0.000698

def zipf_random_sample(distr_map, sample_len): """Helper function: Generate a random Zipf sample of given length. Args: distr_map: list of float, Zipf's distribution over nbr_symbols. sample_len: integer, length of sequence to generate. Returns: sample: list of integer, Zipf's random sample over nbr...

[ "def", "zipf_random_sample", "(", "distr_map", ",", "sample_len", ")", ":", "u", "=", "np", ".", "random", ".", "random", "(", "sample_len", ")", "# Random produces values in range [0.0,1.0); even if it is almost", "# improbable(but possible) that it can generate a clear 0.000....

35.866667

0.01087

def answer_callback_query(self, callback_query_id, text=None, show_alert=None, url=None, cache_time=None): """ Use this method to send answers to callback queries sent from inline keyboards. The answer will be displayed to the user as a notification at the top of the chat screen or as an alert. On succe...

[ "def", "answer_callback_query", "(", "self", ",", "callback_query_id", ",", "text", "=", "None", ",", "show_alert", "=", "None", ",", "url", "=", "None", ",", "cache_time", "=", "None", ")", ":", "assert_type_or_raise", "(", "callback_query_id", ",", "unicode_...

54.473684

0.009491

def parse(self, plist): """Update the builder using the provided `plist`. `plist` can be either a Packet() or a PacketList(). """ if not isinstance(plist, PacketList): plist = PacketList(plist) for pkt in plist[LLTD]: if LLTDQueryLargeTlv in pkt: ...

[ "def", "parse", "(", "self", ",", "plist", ")", ":", "if", "not", "isinstance", "(", "plist", ",", "PacketList", ")", ":", "plist", "=", "PacketList", "(", "plist", ")", "for", "pkt", "in", "plist", "[", "LLTD", "]", ":", "if", "LLTDQueryLargeTlv", "...

47.178571

0.001484

def addValue(self, source, value): """Adds a value from the given source.""" if self.source is None or self.fn(self.value, value): self.value = value self.source = source

[ "def", "addValue", "(", "self", ",", "source", ",", "value", ")", ":", "if", "self", ".", "source", "is", "None", "or", "self", ".", "fn", "(", "self", ".", "value", ",", "value", ")", ":", "self", ".", "value", "=", "value", "self", ".", "source...

37.2

0.015789

def cmyk_to_cmy(c, m=None, y=None, k=None): """Convert the color from CMYK coordinates to CMY. Parameters: :c: The Cyan component value [0...1] :m: The Magenta component value [0...1] :y: The Yellow component value [0...1] :k: The Black component value [0...1] Returns: ...

[ "def", "cmyk_to_cmy", "(", "c", ",", "m", "=", "None", ",", "y", "=", "None", ",", "k", "=", "None", ")", ":", "if", "type", "(", "c", ")", "in", "[", "list", ",", "tuple", "]", ":", "c", ",", "m", ",", "y", ",", "k", "=", "c", "mk", "=...

21

0.010118

def get_table(): """Provides table of scheduling block instance metadata for use with AJAX tables""" response = dict(blocks=[]) block_ids = DB.get_sched_block_instance_ids() for index, block_id in enumerate(block_ids): block = DB.get_block_details([block_id]).__next__() info = [ ...

[ "def", "get_table", "(", ")", ":", "response", "=", "dict", "(", "blocks", "=", "[", "]", ")", "block_ids", "=", "DB", ".", "get_sched_block_instance_ids", "(", ")", "for", "index", ",", "block_id", "in", "enumerate", "(", "block_ids", ")", ":", "block",...

33.933333

0.001912

def remove_reader(self, fd): " Stop watching the file descriptor for read availability. " h = msvcrt.get_osfhandle(fd) if h in self._read_fds: del self._read_fds[h]

[ "def", "remove_reader", "(", "self", ",", "fd", ")", ":", "h", "=", "msvcrt", ".", "get_osfhandle", "(", "fd", ")", "if", "h", "in", "self", ".", "_read_fds", ":", "del", "self", ".", "_read_fds", "[", "h", "]" ]

39.2

0.01

def warp(self, order): """对order/market的封装 [description] Arguments: order {[type]} -- [description] Returns: [type] -- [description] """ # 因为成交模式对时间的封装 if order.order_model == ORDER_MODEL.MARKET: if order.frequence is FREQ...

[ "def", "warp", "(", "self", ",", "order", ")", ":", "# 因为成交模式对时间的封装", "if", "order", ".", "order_model", "==", "ORDER_MODEL", ".", "MARKET", ":", "if", "order", ".", "frequence", "is", "FREQUENCE", ".", "DAY", ":", "# exact_time = str(datetime.datetime.strptime(...

38.115385

0.001229